xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision c7b600bfa1e09390635288e28b2255a907e0e6b5)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
1026cec326SBarry Smith {
1126cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1226cec326SBarry Smith 
1326cec326SBarry Smith   PetscFunctionBegin;
1426cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1526cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1626cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
1726cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
1826cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2026cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2126cec326SBarry Smith #else
2226cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
2326cec326SBarry Smith #endif
2426cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
2526cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
2626cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
2726cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
2826cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
2926cec326SBarry Smith 
3026cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3126cec326SBarry Smith 
3226cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
3326cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
3426cec326SBarry Smith 
3526cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
4126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
4326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
4726cec326SBarry Smith #endif
4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
4926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
5026cec326SBarry Smith #endif
5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
5226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
5326cec326SBarry Smith #endif
5426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
5726cec326SBarry Smith #endif
5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
6026cec326SBarry Smith #endif
6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
6226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
6326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
6426cec326SBarry Smith #endif
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
6926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
7326cec326SBarry Smith #endif
7426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
7626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
7726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
7926cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
8026cec326SBarry Smith }
8126cec326SBarry Smith 
8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
8326cec326SBarry Smith #define TYPE AIJ
8426cec326SBarry Smith #define TYPE_AIJ
8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
8626cec326SBarry Smith #undef TYPE
8726cec326SBarry Smith #undef TYPE_AIJ
8826cec326SBarry Smith 
89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
90d71ae5a4SJacob Faibussowitsch {
918a9c020eSBarry Smith   Mat B;
928a9c020eSBarry Smith 
938a9c020eSBarry Smith   PetscFunctionBegin;
948a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
958a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
968a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
97501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
998a9c020eSBarry Smith }
1008a9c020eSBarry Smith 
101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
102d71ae5a4SJacob Faibussowitsch {
1038a9c020eSBarry Smith   Mat B;
1048a9c020eSBarry Smith 
1058a9c020eSBarry Smith   PetscFunctionBegin;
1068a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1078a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
108501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1108a9c020eSBarry Smith }
1118a9c020eSBarry Smith 
11201bebe75SBarry Smith /*MC
11301bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
11401bebe75SBarry Smith 
11511a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
11611a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
11711a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
11801bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
11901bebe75SBarry Smith   the above preallocation routines for simplicity.
12001bebe75SBarry Smith 
12127430b45SBarry Smith    Options Database Key:
12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
12301bebe75SBarry Smith 
12411a5261eSBarry Smith   Developer Note:
1252ef1f0ffSBarry Smith   Level: beginner
1262ef1f0ffSBarry Smith 
12711a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
12801bebe75SBarry Smith    enough exist.
12901bebe75SBarry Smith 
1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
13101bebe75SBarry Smith M*/
13201bebe75SBarry Smith 
13301bebe75SBarry Smith /*MC
13401bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
13501bebe75SBarry Smith 
13611a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
13711a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
13811a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
13901bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14001bebe75SBarry Smith   the above preallocation routines for simplicity.
14101bebe75SBarry Smith 
14227430b45SBarry Smith    Options Database Key:
14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
14401bebe75SBarry Smith 
14501bebe75SBarry Smith   Level: beginner
14601bebe75SBarry Smith 
1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
14801bebe75SBarry Smith M*/
14901bebe75SBarry Smith 
150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
151d71ae5a4SJacob Faibussowitsch {
152f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
153f74ef234SStefano Zampini 
154f74ef234SStefano Zampini   PetscFunctionBegin;
155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
156b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
157f74ef234SStefano Zampini #endif
1581baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1591baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1603120d049SRichard Tran Mills 
1613120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1623120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1633120d049SRichard Tran Mills    * to differ from the parent matrix. */
1641baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1651baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
167f74ef234SStefano Zampini }
168f74ef234SStefano Zampini 
169ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
170d71ae5a4SJacob Faibussowitsch {
17126bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
17226bda2c4Sstefano_zampini 
17326bda2c4Sstefano_zampini   PetscFunctionBegin;
17446533700Sstefano_zampini   if (mat->A) {
1759566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1769566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
17746533700Sstefano_zampini   }
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17926bda2c4Sstefano_zampini }
18026bda2c4Sstefano_zampini 
181ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
182d71ae5a4SJacob Faibussowitsch {
18327d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
18427d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
18527d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
18627d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
187ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
18827d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
18927d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
19027d4218bSShri Abhyankar 
19127d4218bSShri Abhyankar   PetscFunctionBegin;
192f4259b30SLisandro Dalcin   *keptrows = NULL;
193ce496241SStefano Zampini 
19427d4218bSShri Abhyankar   ia = a->i;
19527d4218bSShri Abhyankar   ib = b->i;
1969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
1979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
19827d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
19927d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
20027d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
20127d4218bSShri Abhyankar     if (!na && !nb) {
20227d4218bSShri Abhyankar       cnt++;
20327d4218bSShri Abhyankar       goto ok1;
20427d4218bSShri Abhyankar     }
205ce496241SStefano Zampini     aa = aav + ia[i];
20627d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
20727d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
20827d4218bSShri Abhyankar     }
2098e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
21027d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
21127d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
21227d4218bSShri Abhyankar     }
21327d4218bSShri Abhyankar     cnt++;
21427d4218bSShri Abhyankar   ok1:;
21527d4218bSShri Abhyankar   }
2161c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
217ce496241SStefano Zampini   if (!n0rows) {
2189566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2203ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
221ce496241SStefano Zampini   }
2229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
22327d4218bSShri Abhyankar   cnt = 0;
22427d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22527d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22627d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22727d4218bSShri Abhyankar     if (!na && !nb) continue;
228ce496241SStefano Zampini     aa = aav + ia[i];
22927d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
23027d4218bSShri Abhyankar       if (aa[j] != 0.0) {
23127d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23227d4218bSShri Abhyankar         goto ok2;
23327d4218bSShri Abhyankar       }
23427d4218bSShri Abhyankar     }
2358e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23627d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23727d4218bSShri Abhyankar       if (bb[j] != 0.0) {
23827d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23927d4218bSShri Abhyankar         goto ok2;
24027d4218bSShri Abhyankar       }
24127d4218bSShri Abhyankar     }
24227d4218bSShri Abhyankar   ok2:;
24327d4218bSShri Abhyankar   }
2449566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2469566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24827d4218bSShri Abhyankar }
24927d4218bSShri Abhyankar 
250ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
251d71ae5a4SJacob Faibussowitsch {
25299e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
25394342113SStefano Zampini   PetscBool   cong;
25499e65526SBarry Smith 
25599e65526SBarry Smith   PetscFunctionBegin;
2569566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
25794342113SStefano Zampini   if (Y->assembled && cong) {
2589566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
25999e65526SBarry Smith   } else {
2609566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
26199e65526SBarry Smith   }
2623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26399e65526SBarry Smith }
26499e65526SBarry Smith 
265ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
266d71ae5a4SJacob Faibussowitsch {
267f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
268f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
269f1f41ecbSJed Brown 
270f1f41ecbSJed Brown   PetscFunctionBegin;
2710298fd71SBarry Smith   *zrows = NULL;
2729566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2739566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
274f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2759566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
277f1f41ecbSJed Brown }
278f1f41ecbSJed Brown 
279ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
280d71ae5a4SJacob Faibussowitsch {
2810716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
282a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
2830716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
2840716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
2850716a85fSBarry Smith   PetscReal         *work;
286ce496241SStefano Zampini   const PetscScalar *dummy;
2870716a85fSBarry Smith 
2880716a85fSBarry Smith   PetscFunctionBegin;
2899566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
2909566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
2919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
2929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
2939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
2949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
295857cbf51SRichard Tran Mills   if (type == NORM_2) {
296ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
297ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
298857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
299ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
300ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
301857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
302ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
303ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
304857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
305ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
306ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
307857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
308ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
309ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
310857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
311857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
3121c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3130716a85fSBarry Smith   } else {
3141c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3150716a85fSBarry Smith   }
3169566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
317857cbf51SRichard Tran Mills   if (type == NORM_2) {
318a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
319857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
320a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3210716a85fSBarry Smith   }
3223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3230716a85fSBarry Smith }
3240716a85fSBarry Smith 
325ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
326d71ae5a4SJacob Faibussowitsch {
327e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
328e52d2c62SBarry Smith   IS              sis, gis;
329e52d2c62SBarry Smith   const PetscInt *isis, *igis;
330e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
331e52d2c62SBarry Smith 
332e52d2c62SBarry Smith   PetscFunctionBegin;
3339566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3349566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3359566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3369566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3379566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3389566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
339e52d2c62SBarry Smith 
3409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3419566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3429566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
343e52d2c62SBarry Smith   n = ngis + nsis;
3449566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3459566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
346e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3479566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
348e52d2c62SBarry Smith 
3499566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3509566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3519566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3529566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
354e52d2c62SBarry Smith }
355e52d2c62SBarry Smith 
356dd6ea824SBarry Smith /*
3570f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3589e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3590f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3600f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
36172fa4726SStefano Zampini has an order N integer array but is fast to access.
3629e25ed09SBarry Smith */
363d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
364d71ae5a4SJacob Faibussowitsch {
36544a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
366d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
367dbb450caSBarry Smith 
3683a40ed3dSBarry Smith   PetscFunctionBegin;
36908401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
370aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
371eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
372c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
373b1fc9764SSatish Balay #else
3749566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
375905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
376b1fc9764SSatish Balay #endif
3773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3789e25ed09SBarry Smith }
3799e25ed09SBarry Smith 
380d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
381a8f51744SPierre Jolivet   do { \
382db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
383db4deed7SKarl Rupp     else high1 = nrow1; \
384fd3458f5SBarry Smith     lastcol1 = col; \
385fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
386fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
387fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
388fd3458f5SBarry Smith       else low1 = t; \
389ba4e3ef2SSatish Balay     } \
390fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
391fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
392fd3458f5SBarry Smith       if (rp1[_i] == col) { \
3930c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
3940c0d7e18SFande Kong           ap1[_i] += value; \
3950c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
3960c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
3979371c9d4SSatish Balay         } else ap1[_i] = value; \
39830770e4dSSatish Balay         goto a_noinsert; \
3990520107fSSatish Balay       } \
4000520107fSSatish Balay     } \
4019371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4029371c9d4SSatish Balay       low1  = 0; \
4039371c9d4SSatish Balay       high1 = nrow1; \
4049371c9d4SSatish Balay       goto a_noinsert; \
4059371c9d4SSatish Balay     } \
4069371c9d4SSatish Balay     if (nonew == 1) { \
4079371c9d4SSatish Balay       low1  = 0; \
4089371c9d4SSatish Balay       high1 = nrow1; \
4099371c9d4SSatish Balay       goto a_noinsert; \
4109371c9d4SSatish Balay     } \
41108401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
412fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4139371c9d4SSatish Balay     N = nrow1++ - 1; \
4149371c9d4SSatish Balay     a->nz++; \
4159371c9d4SSatish Balay     high1++; \
4160520107fSSatish Balay     /* shift up all the later entries in this row */ \
4179566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4189566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
419fd3458f5SBarry Smith     rp1[_i] = col; \
420fd3458f5SBarry Smith     ap1[_i] = value; \
421e56f5c9eSBarry Smith     A->nonzerostate++; \
42230770e4dSSatish Balay   a_noinsert:; \
423fd3458f5SBarry Smith     ailen[row] = nrow1; \
424a8f51744SPierre Jolivet   } while (0)
4250a198c4cSBarry Smith 
426d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
427a8f51744SPierre Jolivet   do { \
428db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
429db4deed7SKarl Rupp     else high2 = nrow2; \
430fd3458f5SBarry Smith     lastcol2 = col; \
431fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
432fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
433fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
434fd3458f5SBarry Smith       else low2 = t; \
435ba4e3ef2SSatish Balay     } \
436fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
437fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
438fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4390c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4400c0d7e18SFande Kong           ap2[_i] += value; \
4410c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4429371c9d4SSatish Balay         } else ap2[_i] = value; \
44330770e4dSSatish Balay         goto b_noinsert; \
44430770e4dSSatish Balay       } \
44530770e4dSSatish Balay     } \
4469371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4479371c9d4SSatish Balay       low2  = 0; \
4489371c9d4SSatish Balay       high2 = nrow2; \
4499371c9d4SSatish Balay       goto b_noinsert; \
4509371c9d4SSatish Balay     } \
4519371c9d4SSatish Balay     if (nonew == 1) { \
4529371c9d4SSatish Balay       low2  = 0; \
4539371c9d4SSatish Balay       high2 = nrow2; \
4549371c9d4SSatish Balay       goto b_noinsert; \
4559371c9d4SSatish Balay     } \
45608401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
457fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4589371c9d4SSatish Balay     N = nrow2++ - 1; \
4599371c9d4SSatish Balay     b->nz++; \
4609371c9d4SSatish Balay     high2++; \
46130770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4629566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4639566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
464fd3458f5SBarry Smith     rp2[_i] = col; \
465fd3458f5SBarry Smith     ap2[_i] = value; \
466e56f5c9eSBarry Smith     B->nonzerostate++; \
46730770e4dSSatish Balay   b_noinsert:; \
468fd3458f5SBarry Smith     bilen[row] = nrow2; \
469a8f51744SPierre Jolivet   } while (0)
47030770e4dSSatish Balay 
471ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
472d71ae5a4SJacob Faibussowitsch {
4732fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4742fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4752fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
476fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4772fd7e33dSBarry Smith 
4782fd7e33dSBarry Smith   PetscFunctionBegin;
4792fd7e33dSBarry Smith   /* code only works for square matrices A */
4802fd7e33dSBarry Smith 
4812fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
4829566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
4832fd7e33dSBarry Smith   row = row - diag;
4842fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
4852fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
4862fd7e33dSBarry Smith   }
487fff043a9SJunchao Zhang   if (l) {
4889566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
4899566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
4909566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
491fff043a9SJunchao Zhang   }
4922fd7e33dSBarry Smith 
4932fd7e33dSBarry Smith   /* diagonal part */
494fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
4959566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
4969566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row])));
4979566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
498fff043a9SJunchao Zhang   }
4992fd7e33dSBarry Smith 
5002fd7e33dSBarry Smith   /* right of diagonal part */
501fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5029566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5039566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5049566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
505fff043a9SJunchao Zhang   }
5063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5072fd7e33dSBarry Smith }
5082fd7e33dSBarry Smith 
509d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
510d71ae5a4SJacob Faibussowitsch {
51144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
512071fcb05SBarry Smith   PetscScalar value = 0.0;
513d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
514d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
515ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5168a729477SBarry Smith 
5170520107fSSatish Balay   /* Some Variables required in the macro */
5184ee7247eSSatish Balay   Mat         A     = aij->A;
5194ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
52057809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
521ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
52230770e4dSSatish Balay   Mat         B                 = aij->B;
52330770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
524d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
525ce496241SStefano Zampini   MatScalar  *aa, *ba;
526fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5278d76821aSHong Zhang   PetscInt    nonew;
528a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5294ee7247eSSatish Balay 
5303a40ed3dSBarry Smith   PetscFunctionBegin;
5319566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5329566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5338a729477SBarry Smith   for (i = 0; i < m; i++) {
5345ef9f2a5SBarry Smith     if (im[i] < 0) continue;
53508401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5364b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5374b0e389bSBarry Smith       row      = im[i] - rstart;
538fd3458f5SBarry Smith       lastcol1 = -1;
5398e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5408e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
541fd3458f5SBarry Smith       rmax1    = aimax[row];
542fd3458f5SBarry Smith       nrow1    = ailen[row];
543fd3458f5SBarry Smith       low1     = 0;
544fd3458f5SBarry Smith       high1    = nrow1;
545fd3458f5SBarry Smith       lastcol2 = -1;
5468e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5478e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
548fd3458f5SBarry Smith       rmax2    = bimax[row];
549d498b1e9SBarry Smith       nrow2    = bilen[row];
550fd3458f5SBarry Smith       low2     = 0;
551fd3458f5SBarry Smith       high2    = nrow2;
552fd3458f5SBarry Smith 
5531eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
554071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
555c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
556fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
557fd3458f5SBarry Smith           col   = in[j] - cstart;
5588d76821aSHong Zhang           nonew = a->nonew;
559d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
560f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
561f7d195e4SLawrence Mitchell           continue;
562f7d195e4SLawrence Mitchell         } else {
563f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
564227d817aSBarry Smith           if (mat->was_assembled) {
56548a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
566aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
567eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
568fa46199cSSatish Balay             col--;
569b1fc9764SSatish Balay #else
570905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
571b1fc9764SSatish Balay #endif
572f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
5739566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIAIJ(mat));               /* Change aij->B from reduced/local format to expanded/global format */
5744b0e389bSBarry Smith               col = in[j];
5759bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
576f9508a3cSSatish Balay               B     = aij->B;
577f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5789371c9d4SSatish Balay               bimax = b->imax;
5799371c9d4SSatish Balay               bi    = b->i;
5809371c9d4SSatish Balay               bilen = b->ilen;
5819371c9d4SSatish Balay               bj    = b->j;
5829371c9d4SSatish Balay               ba    = b->a;
583d498b1e9SBarry Smith               rp2   = bj + bi[row];
584d498b1e9SBarry Smith               ap2   = ba + bi[row];
585d498b1e9SBarry Smith               rmax2 = bimax[row];
586d498b1e9SBarry Smith               nrow2 = bilen[row];
587d498b1e9SBarry Smith               low2  = 0;
588d498b1e9SBarry Smith               high2 = nrow2;
589d0f46423SBarry Smith               bm    = aij->B->rmap->n;
590f9508a3cSSatish Balay               ba    = b->a;
591d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
592f4f49eeaSPierre Jolivet               if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) {
5939566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
59498921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
5950587a0fcSBarry Smith             }
596c48de900SBarry Smith           } else col = in[j];
5978d76821aSHong Zhang           nonew = b->nonew;
598d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
5991eb62cbbSBarry Smith         }
6001eb62cbbSBarry Smith       }
6015ef9f2a5SBarry Smith     } else {
60228b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
60390f02eecSBarry Smith       if (!aij->donotstash) {
6045080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
605d36fbae8SSatish Balay         if (roworiented) {
6068e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
607d36fbae8SSatish Balay         } else {
6088e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6094b0e389bSBarry Smith         }
6101eb62cbbSBarry Smith       }
6118a729477SBarry Smith     }
61290f02eecSBarry Smith   }
6135519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6168a729477SBarry Smith }
6178a729477SBarry Smith 
6182b08fdbeSandi selinger /*
619904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6202b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
621904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6222b08fdbeSandi selinger */
623d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
624d71ae5a4SJacob Faibussowitsch {
625904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
626904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6274cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
628904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
629904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
630904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
631904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
632904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6336dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
634904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
635904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
636904d1e70Sandi selinger 
637904d1e70Sandi selinger   PetscFunctionBegin;
638904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
639904d1e70Sandi selinger   for (j = 0; j < am; j++) {
640904d1e70Sandi selinger     dnz = onz = 0;
641904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6426dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
643904d1e70Sandi selinger       /* If column is in the diagonal */
644904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
645904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
646904d1e70Sandi selinger         dnz++;
647904d1e70Sandi selinger       } else { /* off-diagonal entries */
648904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
649904d1e70Sandi selinger         onz++;
650904d1e70Sandi selinger       }
651904d1e70Sandi selinger     }
652904d1e70Sandi selinger     ailen[j] = dnz;
653904d1e70Sandi selinger     bilen[j] = onz;
654904d1e70Sandi selinger   }
6553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
656904d1e70Sandi selinger }
657904d1e70Sandi selinger 
658904d1e70Sandi selinger /*
659904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
660904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6611de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6621de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6631de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
664904d1e70Sandi selinger */
665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
666d71ae5a4SJacob Faibussowitsch {
6673a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6683a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6694cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
670f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6713a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6723a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6733a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6743a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6753a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6766dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6771de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
678904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
679904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
6803a063d27Sandi selinger 
6813a063d27Sandi selinger   PetscFunctionBegin;
6823a063d27Sandi selinger   /* Iterate over all rows of the matrix */
6833a063d27Sandi selinger   for (j = 0; j < am; j++) {
684904d1e70Sandi selinger     dnz_row = onz_row = 0;
685904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
686904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
687e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
688e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
689ae8e66a0Sandi selinger       /* If column is in the diagonal */
6903a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
691904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
692904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
693904d1e70Sandi selinger         dnz_row++;
694ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
695904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
696904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
697904d1e70Sandi selinger         onz_row++;
6983a063d27Sandi selinger       }
6993a063d27Sandi selinger     }
700904d1e70Sandi selinger     ailen[j] = dnz_row;
701904d1e70Sandi selinger     bilen[j] = onz_row;
7023a063d27Sandi selinger   }
7033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7043a063d27Sandi selinger }
7053a063d27Sandi selinger 
706ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
707d71ae5a4SJacob Faibussowitsch {
708b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
709d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
710d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
711b49de8d1SLois Curfman McInnes 
7123a40ed3dSBarry Smith   PetscFunctionBegin;
713b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
71454c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
71554c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
71685835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
717b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
718b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
71954c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
72054c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
721b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
722b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7239566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
724fa852ad4SSatish Balay       } else {
72548a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
726aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
727eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
728fa46199cSSatish Balay         col--;
729b1fc9764SSatish Balay #else
730905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
731b1fc9764SSatish Balay #endif
732e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
73348a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
734b49de8d1SLois Curfman McInnes       }
735b49de8d1SLois Curfman McInnes     }
736b49de8d1SLois Curfman McInnes   }
7373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
738b49de8d1SLois Curfman McInnes }
739bc5ccf88SSatish Balay 
740ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
741d71ae5a4SJacob Faibussowitsch {
742bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
743b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
744bc5ccf88SSatish Balay 
745bc5ccf88SSatish Balay   PetscFunctionBegin;
7463ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
747bc5ccf88SSatish Balay 
7489566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7499566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7509566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
752bc5ccf88SSatish Balay }
753bc5ccf88SSatish Balay 
754d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
755d71ae5a4SJacob Faibussowitsch {
756bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
757b1d57f15SBarry Smith   PetscMPIInt  n;
758b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
759e44c0bd4SBarry Smith   PetscInt    *row, *col;
760ace3abfcSBarry Smith   PetscBool    other_disassembled;
76187828ca2SBarry Smith   PetscScalar *val;
762bc5ccf88SSatish Balay 
76391c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7646e111a19SKarl Rupp 
765bc5ccf88SSatish Balay   PetscFunctionBegin;
7664cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
767a2d1c673SSatish Balay     while (1) {
7689566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
769a2d1c673SSatish Balay       if (!flg) break;
770a2d1c673SSatish Balay 
771bc5ccf88SSatish Balay       for (i = 0; i < n;) {
772bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7732205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7742205254eSKarl Rupp           if (row[j] != rstart) break;
7752205254eSKarl Rupp         }
776bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
777bc5ccf88SSatish Balay         else ncols = n - i;
778bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7799566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
780bc5ccf88SSatish Balay         i = j;
781bc5ccf88SSatish Balay       }
782bc5ccf88SSatish Balay     }
7839566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
784bc5ccf88SSatish Balay   }
7858c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
786c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
7879ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
7889ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
7899566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
7909566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
7919ecce9b1SRichard Tran Mills   }
792e2cf4d64SStefano Zampini #endif
7939566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
7949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
795bc5ccf88SSatish Balay 
796bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
797071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
798bc5ccf88SSatish Balay   /*
799bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
800bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
801bc5ccf88SSatish Balay   */
802bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
8035f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
80435cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
8059566063dSJacob Faibussowitsch       PetscCall(MatDisAssemble_MPIAIJ(mat));
806ad59fb31SSatish Balay     }
807ad59fb31SSatish Balay   }
80848a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8099566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8108c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
811c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
812e2cf4d64SStefano Zampini #endif
8139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
815bc5ccf88SSatish Balay 
8169566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8172205254eSKarl Rupp 
818f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
819a30b2313SHong Zhang 
8209566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
821e56f5c9eSBarry Smith 
8224f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
823f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
824e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
8251c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
826e56f5c9eSBarry Smith   }
8278c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
828c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
829e2cf4d64SStefano Zampini #endif
8303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
831bc5ccf88SSatish Balay }
832bc5ccf88SSatish Balay 
833ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
834d71ae5a4SJacob Faibussowitsch {
83544a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8363a40ed3dSBarry Smith 
8373a40ed3dSBarry Smith   PetscFunctionBegin;
8389566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8399566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8411eb62cbbSBarry Smith }
8421eb62cbbSBarry Smith 
843ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
844d71ae5a4SJacob Faibussowitsch {
8451b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8461b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8476e520ac8SStefano Zampini   PetscInt    r, len;
8489939a2d1SBarry Smith   PetscBool   cong;
8491eb62cbbSBarry Smith 
8503a40ed3dSBarry Smith   PetscFunctionBegin;
8516e520ac8SStefano Zampini   /* get locally owned rows */
8529566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8539566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
854dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
85597b48c8fSBarry Smith   if (x && b) {
8561b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8571b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8581b1dd7adSMatthew G. Knepley 
85928b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8609566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8619566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8621b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8639566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8649566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
86597b48c8fSBarry Smith   }
866a92ad425SStefano Zampini 
867a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8689566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8699566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
870a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
871a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
872a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
873a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
874a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
875a92ad425SStefano Zampini 
876a92ad425SStefano Zampini     nnwA = aijA->nonew;
877a92ad425SStefano Zampini     nnwB = aijB->nonew;
878a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
879a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
880a92ad425SStefano Zampini     if (!nnzA) {
8819566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
882a92ad425SStefano Zampini       aijA->nonew = 0;
883a92ad425SStefano Zampini     }
884a92ad425SStefano Zampini     if (!nnzB) {
8859566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
886a92ad425SStefano Zampini       aijB->nonew = 0;
887a92ad425SStefano Zampini     }
888a92ad425SStefano Zampini     /* Must zero here before the next loop */
8899566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
8909566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
8911b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
8921b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
893a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
8949566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
895e2d53e46SBarry Smith     }
896a92ad425SStefano Zampini     aijA->nonew = nnwA;
897a92ad425SStefano Zampini     aijB->nonew = nnwB;
8986eb55b6aSBarry Smith   } else {
8999566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9009566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9016eb55b6aSBarry Smith   }
9029566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9054f9cfa9eSBarry Smith 
9069939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
907f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9089939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
9099939a2d1SBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9109939a2d1SBarry Smith   }
9113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9121eb62cbbSBarry Smith }
9131eb62cbbSBarry Smith 
914ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
915d71ae5a4SJacob Faibussowitsch {
9169c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9175ba17502SJed Brown   PetscMPIInt        n = A->rmap->n;
918131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
91954bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
920131c27b5Sprj-   PetscMPIInt        p = 0;
92154bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
92254bd4135SMatthew G. Knepley   PetscSF            sf;
9239c7c4993SBarry Smith   const PetscScalar *xx;
924fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
925564f14d6SBarry Smith   Vec                xmask, lmask;
926564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
927564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
928564f14d6SBarry Smith   PetscScalar       *aa;
9299c7c4993SBarry Smith 
9309c7c4993SBarry Smith   PetscFunctionBegin;
93154bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
93354bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
93554bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
93654bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
937aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9385ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9399566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9405ba17502SJed Brown     }
94154bd4135SMatthew G. Knepley     rrows[r].rank  = p;
94254bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9439c7c4993SBarry Smith   }
9449566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9459566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
94654bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9479566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9489566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9499566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
95054bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9519371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9529371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
953564f14d6SBarry Smith   /* zero diagonal part of matrix */
9549566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9554cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9569566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9579566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9589566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
95954bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9609566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9619566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9629566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9639566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
964a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
965a92ad425SStefano Zampini     PetscBool cong;
966a92ad425SStefano Zampini 
9679566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
96828b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9699566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9709566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9719566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9729566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
973377aa5a1SBarry Smith   }
9749566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9754cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9769566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
977564f14d6SBarry Smith   ii = aij->i;
9788e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
979564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
980564f14d6SBarry Smith   if (aij->compressedrow.use) {
981564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
982564f14d6SBarry Smith     ii   = aij->compressedrow.i;
983564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
984564f14d6SBarry Smith     for (i = 0; i < m; i++) {
985564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
986564f14d6SBarry Smith       aj = aij->j + ii[i];
987fff043a9SJunchao Zhang       aa = aij_a + ii[i];
988564f14d6SBarry Smith 
989564f14d6SBarry Smith       for (j = 0; j < n; j++) {
99025266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
991377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
992564f14d6SBarry Smith           *aa = 0.0;
993564f14d6SBarry Smith         }
994564f14d6SBarry Smith         aa++;
995564f14d6SBarry Smith         aj++;
996564f14d6SBarry Smith       }
997564f14d6SBarry Smith       ridx++;
998564f14d6SBarry Smith     }
999564f14d6SBarry Smith   } else { /* do not use compressed row format */
1000564f14d6SBarry Smith     m = l->B->rmap->n;
1001564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1002564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1003564f14d6SBarry Smith       aj = aij->j + ii[i];
1004fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1005564f14d6SBarry Smith       for (j = 0; j < n; j++) {
100625266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1007377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1008564f14d6SBarry Smith           *aa = 0.0;
1009564f14d6SBarry Smith         }
1010564f14d6SBarry Smith         aa++;
1011564f14d6SBarry Smith         aj++;
1012564f14d6SBarry Smith       }
1013564f14d6SBarry Smith     }
1014564f14d6SBarry Smith   }
1015a92ad425SStefano Zampini   if (x && b) {
10169566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10179566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1018377aa5a1SBarry Smith   }
10199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10209566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10229566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10234f9cfa9eSBarry Smith 
10244f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1025f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10264f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
10271c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10284f9cfa9eSBarry Smith   }
10293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10309c7c4993SBarry Smith }
10319c7c4993SBarry Smith 
1032ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1033d71ae5a4SJacob Faibussowitsch {
1034416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1035b1d57f15SBarry Smith   PetscInt    nt;
103619b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1037416022c9SBarry Smith 
10383a40ed3dSBarry Smith   PetscFunctionBegin;
10399566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
104008401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10419566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1042296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10439566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1044296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10461eb62cbbSBarry Smith }
10471eb62cbbSBarry Smith 
1048ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1049d71ae5a4SJacob Faibussowitsch {
1050bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1051bd0c2dcbSBarry Smith 
1052bd0c2dcbSBarry Smith   PetscFunctionBegin;
10539566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1055bd0c2dcbSBarry Smith }
1056bd0c2dcbSBarry Smith 
1057ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1058d71ae5a4SJacob Faibussowitsch {
1059416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
106001ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10613a40ed3dSBarry Smith 
10623a40ed3dSBarry Smith   PetscFunctionBegin;
10639566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10649566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10659566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10669566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1068da3a660dSBarry Smith }
1069da3a660dSBarry Smith 
1070ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1071d71ae5a4SJacob Faibussowitsch {
1072416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1073da3a660dSBarry Smith 
10743a40ed3dSBarry Smith   PetscFunctionBegin;
1075da3a660dSBarry Smith   /* do nondiagonal part */
10769566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1077da3a660dSBarry Smith   /* do local part */
10789566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10799613dc34SJunchao Zhang   /* add partial results together */
10809566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10819566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1083da3a660dSBarry Smith }
1084da3a660dSBarry Smith 
1085ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1086d71ae5a4SJacob Faibussowitsch {
10874f423910Svictorle   MPI_Comm    comm;
1088ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1089ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1090cd0d46ebSvictorle   IS          Me, Notme;
1091b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
109254d735aeSStefano Zampini   PetscBool   lf;
1093b1d57f15SBarry Smith   PetscMPIInt size;
1094cd0d46ebSvictorle 
1095cd0d46ebSvictorle   PetscFunctionBegin;
109642e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
10979566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
10981c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
10993ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11009566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11023ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
110342e5f5b4Svictorle 
11047dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11059566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11069566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1108cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1109cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11109566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11119566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11129566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
111366501d38Svictorle   Aoff = Aoffs[0];
11149566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
111566501d38Svictorle   Boff = Boffs[0];
11169566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11179566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11189566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11199566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11209566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11219566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1123cd0d46ebSvictorle }
1124cd0d46ebSvictorle 
1125ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1126d71ae5a4SJacob Faibussowitsch {
1127416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1128da3a660dSBarry Smith 
11293a40ed3dSBarry Smith   PetscFunctionBegin;
1130da3a660dSBarry Smith   /* do nondiagonal part */
11319566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1132da3a660dSBarry Smith   /* do local part */
11339566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11349613dc34SJunchao Zhang   /* add partial results together */
11359566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11369566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1138da3a660dSBarry Smith }
1139da3a660dSBarry Smith 
11401eb62cbbSBarry Smith /*
11411eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11421eb62cbbSBarry Smith    diagonal block
11431eb62cbbSBarry Smith */
1144ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1145d71ae5a4SJacob Faibussowitsch {
1146416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11473a40ed3dSBarry Smith 
11483a40ed3dSBarry Smith   PetscFunctionBegin;
114908401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1150aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11519566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11531eb62cbbSBarry Smith }
11541eb62cbbSBarry Smith 
1155ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1156d71ae5a4SJacob Faibussowitsch {
1157052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11583a40ed3dSBarry Smith 
11593a40ed3dSBarry Smith   PetscFunctionBegin;
11609566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11619566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1163052efed2SBarry Smith }
1164052efed2SBarry Smith 
1165ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1166d71ae5a4SJacob Faibussowitsch {
11678e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11688e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11698e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11703ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11712e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
117217a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
117317a3732bSBarry Smith   PetscInt64         nz, hnz;
11743ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11753ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11763ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
117717a3732bSBarry Smith   PetscMPIInt        rank;
11788e2fed03SBarry Smith 
11798e2fed03SBarry Smith   PetscFunctionBegin;
11809566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
11813ea6fe3dSLisandro Dalcin 
11823ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
11833ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
11843ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
11853ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
11863ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
11878e2fed03SBarry Smith   nz = A->nz + B->nz;
11883ea6fe3dSLisandro Dalcin 
11893ea6fe3dSLisandro Dalcin   /* write matrix header */
11900700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
11919371c9d4SSatish Balay   header[1] = M;
11929371c9d4SSatish Balay   header[2] = N;
119317a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
119417a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
119538b83642SBarry Smith   if (rank == 0) {
119638b83642SBarry Smith     if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT;
119738b83642SBarry Smith     else header[3] = (PetscInt)hnz;
119838b83642SBarry Smith   }
11999566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12008e2fed03SBarry Smith 
12013ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12033ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12049566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12059566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12068e2fed03SBarry Smith 
12073ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12093ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12103ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12113ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12123ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12138e2fed03SBarry Smith     }
12149371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12159371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12168e2fed03SBarry Smith   }
121717a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12189566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12199566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12208e2fed03SBarry Smith 
12213ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12253ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12263ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12273ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12282e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12298e2fed03SBarry Smith     }
12309371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12319371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12328e2fed03SBarry Smith   }
12339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
123517a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12369566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12379566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12388e2fed03SBarry Smith 
12393ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12409566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12428e2fed03SBarry Smith }
12438e2fed03SBarry Smith 
12449804daf3SBarry Smith #include <petscdraw.h>
1245ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1246d71ae5a4SJacob Faibussowitsch {
124744a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
124832dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1249ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1250b0a32e0cSBarry Smith   PetscViewer       sviewer;
1251f3ef73ceSBarry Smith   PetscViewerFormat format;
1252416022c9SBarry Smith 
12533a40ed3dSBarry Smith   PetscFunctionBegin;
12549566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12559566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12569566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
125732077d6dSBarry Smith   if (iascii) {
12589566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1259ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
1260f4f49eeaSPierre Jolivet       PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12619566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12629566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1263ef5fdb51SBarry Smith       for (i = 0; i < (PetscInt)size; i++) {
1264ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1265ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1266ef5fdb51SBarry Smith         navg += nz[i];
1267ef5fdb51SBarry Smith       }
12689566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1269ef5fdb51SBarry Smith       navg = navg / size;
12709566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12713ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1272ef5fdb51SBarry Smith     }
12739566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1274456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12754e220ebcSLois Curfman McInnes       MatInfo   info;
12766335e310SSatish Balay       PetscInt *inodes = NULL;
1277923f20ffSKris Buschelman 
12789566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12799566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12809566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12819566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1282923f20ffSKris Buschelman       if (!inodes) {
12839371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12849371c9d4SSatish Balay                                                      (double)info.memory));
12856831982aSBarry Smith       } else {
12869371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12879371c9d4SSatish Balay                                                      (double)info.memory));
12886831982aSBarry Smith       }
12899566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
12909566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
12919566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
12929566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
12939566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
12949566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
12959566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
12969566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
12973ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1298fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1299923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13009566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1301923f20ffSKris Buschelman       if (inodes) {
13029566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1303d38fa0fbSBarry Smith       } else {
13049566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1305d38fa0fbSBarry Smith       }
13063ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13074aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13083ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
130908480c60SBarry Smith     }
13108e2fed03SBarry Smith   } else if (isbinary) {
13118e2fed03SBarry Smith     if (size == 1) {
13129566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13139566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13148e2fed03SBarry Smith     } else {
13159566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13168e2fed03SBarry Smith     }
13173ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
131871e56450SStefano Zampini   } else if (iascii && size == 1) {
13199566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13209566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13213ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13220f5bd95cSBarry Smith   } else if (isdraw) {
1323b0a32e0cSBarry Smith     PetscDraw draw;
1324ace3abfcSBarry Smith     PetscBool isnull;
13259566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13269566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13273ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
132819bcc07fSBarry Smith   }
132919bcc07fSBarry Smith 
133071e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
133171e56450SStefano Zampini     Mat A = NULL, Av;
133271e56450SStefano Zampini     IS  isrow, iscol;
13332ee70a88SLois Curfman McInnes 
13349566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13359566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13369566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13379566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
133871e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
133971e56450SStefano Zampini     /*
134071e56450SStefano Zampini     Mat *AA, A = NULL, Av;
134171e56450SStefano Zampini     IS  isrow,iscol;
134271e56450SStefano Zampini 
13439566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13449566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13459566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1346dd400576SPatrick Sanan     if (rank == 0) {
13479566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
134871e56450SStefano Zampini        A    = AA[0];
134971e56450SStefano Zampini        Av   = AA[0];
135095373324SBarry Smith     }
13519566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
135271e56450SStefano Zampini */
13539566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13549566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
135555843e3eSBarry Smith     /*
135655843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1357b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
135855843e3eSBarry Smith     */
13599566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1360dd400576SPatrick Sanan     if (rank == 0) {
136148a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13629566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
136395373324SBarry Smith     }
13649566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13659566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
136695373324SBarry Smith   }
13673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13681eb62cbbSBarry Smith }
13691eb62cbbSBarry Smith 
1370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1371d71ae5a4SJacob Faibussowitsch {
1372ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1373416022c9SBarry Smith 
13743a40ed3dSBarry Smith   PetscFunctionBegin;
13759566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13769566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13779566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13789566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
137948a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1381416022c9SBarry Smith }
1382416022c9SBarry Smith 
1383ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1384d71ae5a4SJacob Faibussowitsch {
138544a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1386f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1387ace3abfcSBarry Smith   PetscBool   hasop;
13888a729477SBarry Smith 
13893a40ed3dSBarry Smith   PetscFunctionBegin;
1390a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
13919566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
13923ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1393a2b30743SBarry Smith   }
1394a2b30743SBarry Smith 
139548a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
13964e980039SJed Brown 
1397c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1398da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
13999566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14002798e883SHong Zhang       its--;
1401da3a660dSBarry Smith     }
14022798e883SHong Zhang 
14032798e883SHong Zhang     while (its--) {
14049566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14059566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14062798e883SHong Zhang 
1407c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14089566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14099566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14102798e883SHong Zhang 
1411c14dc6b6SHong Zhang       /* local sweep */
14129566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14132798e883SHong Zhang     }
14143a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1415da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14169566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14172798e883SHong Zhang       its--;
1418da3a660dSBarry Smith     }
14192798e883SHong Zhang     while (its--) {
14209566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14219566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14222798e883SHong Zhang 
1423c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14249566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14259566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1426c14dc6b6SHong Zhang 
1427c14dc6b6SHong Zhang       /* local sweep */
14289566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14292798e883SHong Zhang     }
14303a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1431da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14329566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14332798e883SHong Zhang       its--;
1434da3a660dSBarry Smith     }
14352798e883SHong Zhang     while (its--) {
14369566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14379566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14382798e883SHong Zhang 
1439c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14409566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14419566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14422798e883SHong Zhang 
1443c14dc6b6SHong Zhang       /* local sweep */
14449566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14452798e883SHong Zhang     }
1446a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1447a7420bb7SBarry Smith     Vec xx1;
1448a7420bb7SBarry Smith 
14499566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14509566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1451a7420bb7SBarry Smith 
14529566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14539566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1454a7420bb7SBarry Smith     if (!mat->diag) {
14559566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14569566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1457a7420bb7SBarry Smith     }
14589566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1459bd0c2dcbSBarry Smith     if (hasop) {
14609566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1461bd0c2dcbSBarry Smith     } else {
14629566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1463bd0c2dcbSBarry Smith     }
14649566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1465887ee2caSBarry Smith 
14669566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1467a7420bb7SBarry Smith 
1468a7420bb7SBarry Smith     /* local sweep */
14699566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14709566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14719566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1472ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1473c14dc6b6SHong Zhang 
14749566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1475a0808db4SHong Zhang 
14767b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14788a729477SBarry Smith }
1479a66be287SLois Curfman McInnes 
1480ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1481d71ae5a4SJacob Faibussowitsch {
148272e6a0cfSJed Brown   Mat             aA, aB, Aperm;
148372e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
148472e6a0cfSJed Brown   PetscScalar    *aa, *ba;
148572e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
148672e6a0cfSJed Brown   PetscSF         rowsf, sf;
14870298fd71SBarry Smith   IS              parcolp = NULL;
148872e6a0cfSJed Brown   PetscBool       done;
148942e855d1Svictor 
149042e855d1Svictor   PetscFunctionBegin;
14919566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
14929566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
14939566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
14949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
149572e6a0cfSJed Brown 
149672e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
14979566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
14989566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
14999566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
150072e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15019566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15029566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
150372e6a0cfSJed Brown 
150472e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15059566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15069566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15079566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
150872e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15099566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15109566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15119566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
151272e6a0cfSJed Brown 
15139566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15149566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15159566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
151672e6a0cfSJed Brown 
151772e6a0cfSJed Brown   /* Find out where my gcols should go */
15189566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15209566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15219566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15249566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15259566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152672e6a0cfSJed Brown 
15279566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15289566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15299566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
153072e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1531131c27b5Sprj-     PetscInt    row = rdest[i];
1532131c27b5Sprj-     PetscMPIInt rowner;
15339566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
153472e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1535131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1536131c27b5Sprj-       PetscMPIInt cowner;
15379566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
153872e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
153972e6a0cfSJed Brown       else onnz[i]++;
154072e6a0cfSJed Brown     }
154172e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1542131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1543131c27b5Sprj-       PetscMPIInt cowner;
15449566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
154572e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
154672e6a0cfSJed Brown       else onnz[i]++;
154772e6a0cfSJed Brown     }
154872e6a0cfSJed Brown   }
15499566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15509566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15519566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15529566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15539566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
155472e6a0cfSJed Brown 
15559566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15579566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
155872e6a0cfSJed Brown   for (i = 0; i < m; i++) {
155972e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1560970468b0SJed Brown     PetscInt  j0, rowlen;
156172e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1562970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1563970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15649566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1565970468b0SJed Brown     }
156672e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1567970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1568970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15699566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1570970468b0SJed Brown     }
157172e6a0cfSJed Brown   }
15729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15749566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15759566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15769566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15779566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15789566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15799566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15809566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15819566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
158272e6a0cfSJed Brown   *B = Aperm;
15833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
158442e855d1Svictor }
158542e855d1Svictor 
1586ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1587d71ae5a4SJacob Faibussowitsch {
1588c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1589c5e4d11fSDmitry Karpeev 
1590c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
15919566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1592c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
15933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1594c5e4d11fSDmitry Karpeev }
1595c5e4d11fSDmitry Karpeev 
1596ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1597d71ae5a4SJacob Faibussowitsch {
1598a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1599a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16003966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1601a66be287SLois Curfman McInnes 
16023a40ed3dSBarry Smith   PetscFunctionBegin;
16034e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16049566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16052205254eSKarl Rupp 
16069371c9d4SSatish Balay   isend[0] = info->nz_used;
16079371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16089371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16099371c9d4SSatish Balay   isend[3] = info->memory;
16109371c9d4SSatish Balay   isend[4] = info->mallocs;
16112205254eSKarl Rupp 
16129566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16132205254eSKarl Rupp 
16149371c9d4SSatish Balay   isend[0] += info->nz_used;
16159371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16169371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16179371c9d4SSatish Balay   isend[3] += info->memory;
16189371c9d4SSatish Balay   isend[4] += info->mallocs;
1619a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16204e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16214e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16224e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16234e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16244e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1625a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
16261c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16272205254eSKarl Rupp 
16284e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16294e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16304e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16314e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16324e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1633a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
16341c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16352205254eSKarl Rupp 
16364e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16374e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16384e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16394e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16404e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1641a66be287SLois Curfman McInnes   }
16424e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16434e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16444e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1646a66be287SLois Curfman McInnes }
1647a66be287SLois Curfman McInnes 
1648d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1649d71ae5a4SJacob Faibussowitsch {
1650c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1651c74985f6SBarry Smith 
16523a40ed3dSBarry Smith   PetscFunctionBegin;
165312c028f9SKris Buschelman   switch (op) {
1654512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
165512c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
165628b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1657a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
165812c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16590ad02fcaSStefano Zampini   case MAT_USE_INODES:
166012c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16611a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1662fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16639566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16649566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
166512c028f9SKris Buschelman     break;
166612c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
166743674050SBarry Smith     MatCheckPreallocated(A, 1);
16684e0d8c25SBarry Smith     a->roworiented = flg;
16692205254eSKarl Rupp 
16709566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16719566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
167212c028f9SKris Buschelman     break;
16738c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1674d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1675d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1676d71ae5a4SJacob Faibussowitsch     break;
1677d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1678d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1679d71ae5a4SJacob Faibussowitsch     break;
1680c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1681ffa07934SHong Zhang   case MAT_SPD:
168277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
168377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1684bf108f30SBarry Smith   case MAT_HERMITIAN:
1685bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1686b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1687b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1688b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
168977e54ba9SKris Buschelman     break;
1690d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1691d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1692d71ae5a4SJacob Faibussowitsch     break;
1693957cac9fSHong Zhang   case MAT_STRUCTURE_ONLY:
1694957cac9fSHong Zhang     /* The option is handled directly by MatSetOption() */
1695957cac9fSHong Zhang     break;
1696d71ae5a4SJacob Faibussowitsch   default:
1697d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
16983a40ed3dSBarry Smith   }
16993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1700c74985f6SBarry Smith }
1701c74985f6SBarry Smith 
1702d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1703d71ae5a4SJacob Faibussowitsch {
1704154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
170587828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1706d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1707d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1708b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
170939e00950SLois Curfman McInnes 
17103a40ed3dSBarry Smith   PetscFunctionBegin;
171128b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17127a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17137a0afa10SBarry Smith 
171470f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17157a0afa10SBarry Smith     /*
17167a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17177a0afa10SBarry Smith     */
17187a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1719b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1720d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17217a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17222205254eSKarl Rupp       if (max < tmp) max = tmp;
17237a0afa10SBarry Smith     }
17249566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17257a0afa10SBarry Smith   }
17267a0afa10SBarry Smith 
1727aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1728abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
172939e00950SLois Curfman McInnes 
17309371c9d4SSatish Balay   pvA = &vworkA;
17319371c9d4SSatish Balay   pcA = &cworkA;
17329371c9d4SSatish Balay   pvB = &vworkB;
17339371c9d4SSatish Balay   pcB = &cworkB;
17349371c9d4SSatish Balay   if (!v) {
17359371c9d4SSatish Balay     pvA = NULL;
17369371c9d4SSatish Balay     pvB = NULL;
17379371c9d4SSatish Balay   }
17389371c9d4SSatish Balay   if (!idx) {
17399371c9d4SSatish Balay     pcA = NULL;
17409371c9d4SSatish Balay     if (!v) pcB = NULL;
17419371c9d4SSatish Balay   }
17429566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17439566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1744154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1745154123eaSLois Curfman McInnes 
174670f0671dSBarry Smith   cmap = mat->garray;
1747154123eaSLois Curfman McInnes   if (v || idx) {
1748154123eaSLois Curfman McInnes     if (nztot) {
1749154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1750b1d57f15SBarry Smith       PetscInt imark = -1;
1751154123eaSLois Curfman McInnes       if (v) {
175270f0671dSBarry Smith         *v = v_p = mat->rowvalues;
175339e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
175470f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1755154123eaSLois Curfman McInnes           else break;
1756154123eaSLois Curfman McInnes         }
1757154123eaSLois Curfman McInnes         imark = i;
175870f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
175970f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1760154123eaSLois Curfman McInnes       }
1761154123eaSLois Curfman McInnes       if (idx) {
176270f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
176370f0671dSBarry Smith         if (imark > -1) {
1764ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
176570f0671dSBarry Smith         } else {
1766154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
176770f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1768154123eaSLois Curfman McInnes             else break;
1769154123eaSLois Curfman McInnes           }
1770154123eaSLois Curfman McInnes           imark = i;
177170f0671dSBarry Smith         }
177270f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
177370f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
177439e00950SLois Curfman McInnes       }
17753f97c4b0SBarry Smith     } else {
1776f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1777f4259b30SLisandro Dalcin       if (v) *v = NULL;
17781ca473b0SSatish Balay     }
1779154123eaSLois Curfman McInnes   }
178039e00950SLois Curfman McInnes   *nz = nztot;
17819566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17829566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
178439e00950SLois Curfman McInnes }
178539e00950SLois Curfman McInnes 
1786d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1787d71ae5a4SJacob Faibussowitsch {
17887a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
17893a40ed3dSBarry Smith 
17903a40ed3dSBarry Smith   PetscFunctionBegin;
179128b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
17927a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
17933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179439e00950SLois Curfman McInnes }
179539e00950SLois Curfman McInnes 
1796ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1797d71ae5a4SJacob Faibussowitsch {
1798855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1799ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1800d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1801329f5518SBarry Smith   PetscReal        sum = 0.0;
1802fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
180304ca555eSLois Curfman McInnes 
18043a40ed3dSBarry Smith   PetscFunctionBegin;
180517699dbbSLois Curfman McInnes   if (aij->size == 1) {
18069566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
180737fa93a5SLois Curfman McInnes   } else {
18089566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18099566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
181004ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1811fff043a9SJunchao Zhang       v = amata;
181204ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18139371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18149371c9d4SSatish Balay         v++;
181504ca555eSLois Curfman McInnes       }
1816fff043a9SJunchao Zhang       v = bmata;
181704ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18189371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18199371c9d4SSatish Balay         v++;
182004ca555eSLois Curfman McInnes       }
18211c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18228f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18239566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18243a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1825329f5518SBarry Smith       PetscReal *tmp, *tmp2;
1826b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18279566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
18289566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2));
182904ca555eSLois Curfman McInnes       *norm = 0.0;
18309371c9d4SSatish Balay       v     = amata;
18319371c9d4SSatish Balay       jj    = amat->j;
183204ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18339371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18349371c9d4SSatish Balay         v++;
183504ca555eSLois Curfman McInnes       }
18369371c9d4SSatish Balay       v  = bmata;
18379371c9d4SSatish Balay       jj = bmat->j;
183804ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18399371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18409371c9d4SSatish Balay         v++;
184104ca555eSLois Curfman McInnes       }
18421c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1843d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
184404ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
184504ca555eSLois Curfman McInnes       }
18469566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18479566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
18489566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18493a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1850329f5518SBarry Smith       PetscReal ntemp = 0.0;
1851d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18528e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
185304ca555eSLois Curfman McInnes         sum = 0.0;
185404ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18559371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18569371c9d4SSatish Balay           v++;
185704ca555eSLois Curfman McInnes         }
18588e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
185904ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18609371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18619371c9d4SSatish Balay           v++;
186204ca555eSLois Curfman McInnes         }
1863515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
186404ca555eSLois Curfman McInnes       }
18651c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18669566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1867ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18689566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18699566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
187037fa93a5SLois Curfman McInnes   }
18713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1872855ac2c5SLois Curfman McInnes }
1873855ac2c5SLois Curfman McInnes 
1874ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1875d71ae5a4SJacob Faibussowitsch {
1876a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1877a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1878071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1879071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1880a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1881ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1882b7c46309SBarry Smith 
18833a40ed3dSBarry Smith   PetscFunctionBegin;
18847fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18859371c9d4SSatish Balay   ma = A->rmap->n;
18869371c9d4SSatish Balay   na = A->cmap->n;
18879371c9d4SSatish Balay   mb = a->B->rmap->n;
18889371c9d4SSatish Balay   nb = a->B->cmap->n;
18899371c9d4SSatish Balay   ai = Aloc->i;
18909371c9d4SSatish Balay   aj = Aloc->j;
18919371c9d4SSatish Balay   bi = Bloc->i;
18929371c9d4SSatish Balay   bj = Bloc->j;
1893fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
189480bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
189580bcc5a1SJed Brown     PetscSFNode         *oloc;
1896713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
189780bcc5a1SJed Brown 
18989566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
189980bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19009566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1901cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
190280bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19039566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
190480bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
190580bcc5a1SJed Brown     /* map those to global */
19069566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19079566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19089566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19099566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
191057168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
191157168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19129566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1913d4bb536fSBarry Smith 
19149566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19159566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
19169566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs)));
19179566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19189566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19199566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1920fc4dec0aSBarry Smith   } else {
1921fc4dec0aSBarry Smith     B = *matout;
19229566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1923fc4dec0aSBarry Smith   }
1924b7c46309SBarry Smith 
1925f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1926a8661f62Sandi selinger   A_diag      = a->A;
1927a8661f62Sandi selinger   B_diag      = &b->A;
1928a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1929a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1930a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1931a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1932f79cb1a0Sandi selinger 
1933f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1934ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1935f79cb1a0Sandi selinger 
19364cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1937a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19387fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19399566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1940f79cb1a0Sandi selinger 
1941b7c46309SBarry Smith   /* copy over the B part */
19429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1944ce496241SStefano Zampini   pbv = bv;
1945d0f46423SBarry Smith   row = A->rmap->rstart;
19462205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
194761a2fbbaSHong Zhang   cols_tmp = cols;
1948da668accSHong Zhang   for (i = 0; i < mb; i++) {
1949da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19509566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19512205254eSKarl Rupp     row++;
1952720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1953720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1954b7c46309SBarry Smith   }
19559566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1957fc73b1b3SBarry Smith 
19589566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1960cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19610de55854SLois Curfman McInnes     *matout = B;
19620de55854SLois Curfman McInnes   } else {
19639566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19640de55854SLois Curfman McInnes   }
19653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1966b7c46309SBarry Smith }
1967b7c46309SBarry Smith 
1968ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1969d71ae5a4SJacob Faibussowitsch {
19704b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19714b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1972b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1973a008b906SSatish Balay 
19743a40ed3dSBarry Smith   PetscFunctionBegin;
19759566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19764b967eb1SSatish Balay   if (rr) {
19779566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
197808401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19794b967eb1SSatish Balay     /* Overlap communication with computation. */
19809566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1981a008b906SSatish Balay   }
19824b967eb1SSatish Balay   if (ll) {
19839566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
198408401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1985dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19864b967eb1SSatish Balay   }
19874b967eb1SSatish Balay   /* scale  the diagonal block */
1988dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19894b967eb1SSatish Balay 
19904b967eb1SSatish Balay   if (rr) {
19914b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
19929566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1993dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
19944b967eb1SSatish Balay   }
19953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1996a008b906SSatish Balay }
1997a008b906SSatish Balay 
1998ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
1999d71ae5a4SJacob Faibussowitsch {
2000bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20013a40ed3dSBarry Smith 
20023a40ed3dSBarry Smith   PetscFunctionBegin;
20039566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2005bb5a7306SBarry Smith }
2006bb5a7306SBarry Smith 
2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2008d71ae5a4SJacob Faibussowitsch {
2009d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2010d4bb536fSBarry Smith   Mat         a, b, c, d;
2011ace3abfcSBarry Smith   PetscBool   flg;
2012d4bb536fSBarry Smith 
20133a40ed3dSBarry Smith   PetscFunctionBegin;
20149371c9d4SSatish Balay   a = matA->A;
20159371c9d4SSatish Balay   b = matA->B;
20169371c9d4SSatish Balay   c = matB->A;
20179371c9d4SSatish Balay   d = matB->B;
2018d4bb536fSBarry Smith 
20199566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
202048a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
20211c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2023d4bb536fSBarry Smith }
2024d4bb536fSBarry Smith 
2025ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2026d71ae5a4SJacob Faibussowitsch {
2027cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2028cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2029cb5b572fSBarry Smith 
2030cb5b572fSBarry Smith   PetscFunctionBegin;
203133f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
203233f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2033cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2034cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2035cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2036cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2037cb5b572fSBarry Smith        then copying the submatrices */
20389566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2039cb5b572fSBarry Smith   } else {
20409566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20419566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2042cb5b572fSBarry Smith   }
20439566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2045cb5b572fSBarry Smith }
2046cb5b572fSBarry Smith 
2047001ddc4fSHong Zhang /*
2048001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2049001ddc4fSHong Zhang    have different nonzero structure.
2050001ddc4fSHong Zhang */
2051d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2052d71ae5a4SJacob Faibussowitsch {
2053001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
205495b7e79eSJed Brown 
205595b7e79eSJed Brown   PetscFunctionBegin;
205695b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
205795b7e79eSJed Brown   for (i = 0; i < m; i++) {
20588e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2059001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2060001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
206195b7e79eSJed Brown     nnz[i] = 0;
206295b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2063001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2064001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
206595b7e79eSJed Brown       nnz[i]++;
206695b7e79eSJed Brown     }
206795b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
206895b7e79eSJed Brown   }
20693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207095b7e79eSJed Brown }
207195b7e79eSJed Brown 
2072001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2073d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2074d71ae5a4SJacob Faibussowitsch {
2075001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2076001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2077001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2078001ddc4fSHong Zhang 
2079001ddc4fSHong Zhang   PetscFunctionBegin;
20809566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2082001ddc4fSHong Zhang }
2083001ddc4fSHong Zhang 
2084ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2085d71ae5a4SJacob Faibussowitsch {
2086ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2087ac90fabeSBarry Smith 
2088ac90fabeSBarry Smith   PetscFunctionBegin;
2089ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
20909566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
20919566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2092ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
20939566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2094ac90fabeSBarry Smith   } else {
20959f5f6813SShri Abhyankar     Mat       B;
20969f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2097d9d719b4SStefano Zampini 
20989566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
20999566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21009566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21019566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21029566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21039566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21049566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21059566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21069566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21079566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21089566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21099566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21109566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2111ac90fabeSBarry Smith   }
21123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2113ac90fabeSBarry Smith }
2114ac90fabeSBarry Smith 
21152726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2116354c94deSBarry Smith 
2117ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2118d71ae5a4SJacob Faibussowitsch {
21195f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21205f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2121354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2122354c94deSBarry Smith 
21239566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21249566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21255f80ce2aSJacob Faibussowitsch   }
21263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2127354c94deSBarry Smith }
2128354c94deSBarry Smith 
2129ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2130d71ae5a4SJacob Faibussowitsch {
213199cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
213299cafbc1SBarry Smith 
213399cafbc1SBarry Smith   PetscFunctionBegin;
21349566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21359566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
213799cafbc1SBarry Smith }
213899cafbc1SBarry Smith 
2139ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2140d71ae5a4SJacob Faibussowitsch {
214199cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214299cafbc1SBarry Smith 
214399cafbc1SBarry Smith   PetscFunctionBegin;
21449566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21459566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214799cafbc1SBarry Smith }
214899cafbc1SBarry Smith 
2149ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2150d71ae5a4SJacob Faibussowitsch {
2151c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2152475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
2153475b8b61SHong Zhang   PetscScalar       *va, *vv;
2154475b8b61SHong Zhang   Vec                vB, vA;
2155475b8b61SHong Zhang   const PetscScalar *vb;
2156c91732d9SHong Zhang 
2157c91732d9SHong Zhang   PetscFunctionBegin;
2158*c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
21599566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2160475b8b61SHong Zhang 
21619566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
2162c91732d9SHong Zhang   if (idx) {
2163475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2164d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2165c91732d9SHong Zhang     }
2166c91732d9SHong Zhang   }
2167c91732d9SHong Zhang 
2168*c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
21699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21709566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2171c91732d9SHong Zhang 
21729566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21739566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2174475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2175c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2176475b8b61SHong Zhang       vv[i] = vb[i];
2177c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2178475b8b61SHong Zhang     } else {
2179475b8b61SHong Zhang       vv[i] = va[i];
21809371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2181c91732d9SHong Zhang     }
2182c91732d9SHong Zhang   }
21839566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
21849566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
21859566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21869566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21879566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21889566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2190c91732d9SHong Zhang }
2191c91732d9SHong Zhang 
2192eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2193eede4a3fSMark Adams {
2194eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2195eede4a3fSMark Adams   Vec         vB, vA;
2196eede4a3fSMark Adams 
2197eede4a3fSMark Adams   PetscFunctionBegin;
2198*c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
2199eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2200*c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
2201eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2202eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2203eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2204eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2205eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2206eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2207eede4a3fSMark Adams }
2208eede4a3fSMark Adams 
2209ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2210d71ae5a4SJacob Faibussowitsch {
2211f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2212f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2213f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2214f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2215f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2216f07e67edSHong Zhang   Vec                diagV, offdiagV;
2217ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2218ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2219f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2220f07e67edSHong Zhang   Mat                B = mat->B;
2221f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2222c87e5d42SMatthew Knepley 
2223c87e5d42SMatthew Knepley   PetscFunctionBegin;
2224f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2225f07e67edSHong Zhang   if (A->cmap->N == n) {
22269566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22279566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22289566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22299566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22309566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22313ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2232f07e67edSHong Zhang   } else if (n == 0) {
2233f07e67edSHong Zhang     if (m) {
22349566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22359371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22369371c9d4SSatish Balay         a[r] = 0.0;
22379371c9d4SSatish Balay         if (idx) idx[r] = -1;
22389371c9d4SSatish Balay       }
22399566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2240f07e67edSHong Zhang     }
22413ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2242f07e67edSHong Zhang   }
2243f07e67edSHong Zhang 
22449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22459566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22469566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22479566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2248f07e67edSHong Zhang 
2249f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2251ce496241SStefano Zampini   ba = bav;
2252f07e67edSHong Zhang   bi = b->i;
2253f07e67edSHong Zhang   bj = b->j;
22549566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2255f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2256f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2257f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22589371c9d4SSatish Balay       offdiagA[r]   = *ba;
22599371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2260f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2261f07e67edSHong Zhang       offdiagA[r] = 0.0;
2262f07e67edSHong Zhang 
2263f07e67edSHong Zhang       /* Find first hole in the cmap */
2264f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2265f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2266f07e67edSHong Zhang         if (col > j && j < cstart) {
2267f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2268f07e67edSHong Zhang           break;
2269f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2270f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2271f07e67edSHong Zhang           break;
2272f07e67edSHong Zhang         }
2273f07e67edSHong Zhang       }
22744e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2275f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2276f07e67edSHong Zhang         if (ncols == 0) {
2277f07e67edSHong Zhang           if (cstart) {
2278f07e67edSHong Zhang             offdiagIdx[r] = 0;
2279f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2280f07e67edSHong Zhang         } else { /* ncols > 0 */
2281f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2282f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2283f07e67edSHong Zhang         }
2284f07e67edSHong Zhang       }
2285f07e67edSHong Zhang     }
2286f07e67edSHong Zhang 
2287f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22889371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22899371c9d4SSatish Balay         offdiagA[r]   = *ba;
22909371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
22919371c9d4SSatish Balay       }
22929371c9d4SSatish Balay       ba++;
22939371c9d4SSatish Balay       bj++;
2294f07e67edSHong Zhang     }
2295f07e67edSHong Zhang   }
2296f07e67edSHong Zhang 
22979566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
22989566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2299f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2300f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2301f07e67edSHong Zhang       a[r] = diagA[r];
2302f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2303f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2304f07e67edSHong Zhang       a[r] = diagA[r];
2305c87e5d42SMatthew Knepley       if (idx) {
2306f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2307f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2308f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2309f07e67edSHong Zhang       }
2310f07e67edSHong Zhang     } else {
2311f07e67edSHong Zhang       a[r] = offdiagA[r];
2312f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2313c87e5d42SMatthew Knepley     }
2314c87e5d42SMatthew Knepley   }
23159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23169566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23179566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23189566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23199566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23209566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23219566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2323c87e5d42SMatthew Knepley }
2324c87e5d42SMatthew Knepley 
2325ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2326d71ae5a4SJacob Faibussowitsch {
232703bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2328fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2329fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
233003bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
233103bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
233203bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2333ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2334ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2335fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2336fa213d2fSHong Zhang   Mat                B = mat->B;
2337fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
233803bc72f1SMatthew Knepley 
233903bc72f1SMatthew Knepley   PetscFunctionBegin;
2340fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2341fa213d2fSHong Zhang   if (A->cmap->N == n) {
23429566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23439566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23449566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23459566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23469566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23473ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2348fa213d2fSHong Zhang   } else if (n == 0) {
2349fa213d2fSHong Zhang     if (m) {
23509566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23519371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23529371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23539371c9d4SSatish Balay         if (idx) idx[r] = -1;
23549371c9d4SSatish Balay       }
23559566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2356fa213d2fSHong Zhang     }
23573ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2358fa213d2fSHong Zhang   }
2359fa213d2fSHong Zhang 
23609566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23619566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23629566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23639566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2364fa213d2fSHong Zhang 
2365fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23669566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2367ce496241SStefano Zampini   ba = bav;
2368fa213d2fSHong Zhang   bi = b->i;
2369fa213d2fSHong Zhang   bj = b->j;
23709566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2371fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2372fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2373fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23749371c9d4SSatish Balay       offdiagA[r]   = *ba;
23759371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2376fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2377fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2378fa213d2fSHong Zhang 
2379fa213d2fSHong Zhang       /* Find first hole in the cmap */
2380fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2381fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2382fa213d2fSHong Zhang         if (col > j && j < cstart) {
2383fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2384fa213d2fSHong Zhang           break;
2385fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2386fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2387fa213d2fSHong Zhang           break;
2388fa213d2fSHong Zhang         }
2389fa213d2fSHong Zhang       }
23904e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2391fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2392fa213d2fSHong Zhang         if (ncols == 0) {
2393fa213d2fSHong Zhang           if (cstart) {
2394fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2395fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2396fa213d2fSHong Zhang         } else { /* ncols > 0 */
2397fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2398fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2399fa213d2fSHong Zhang         }
2400fa213d2fSHong Zhang       }
2401fa213d2fSHong Zhang     }
2402fa213d2fSHong Zhang 
2403fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24049371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24059371c9d4SSatish Balay         offdiagA[r]   = *ba;
24069371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24079371c9d4SSatish Balay       }
24089371c9d4SSatish Balay       ba++;
24099371c9d4SSatish Balay       bj++;
2410fa213d2fSHong Zhang     }
2411fa213d2fSHong Zhang   }
2412fa213d2fSHong Zhang 
24139566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24149566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2415fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2416fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
241703bc72f1SMatthew Knepley       a[r] = diagA[r];
2418fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2419fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2420fa213d2fSHong Zhang       a[r] = diagA[r];
2421fa213d2fSHong Zhang       if (idx) {
2422fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
242303bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2424fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2425fa213d2fSHong Zhang       }
242603bc72f1SMatthew Knepley     } else {
242703bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2428fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
242903bc72f1SMatthew Knepley     }
243003bc72f1SMatthew Knepley   }
24319566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24329566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24339566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24349566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24359566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24369566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24379566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
243903bc72f1SMatthew Knepley }
244003bc72f1SMatthew Knepley 
2441ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2442d71ae5a4SJacob Faibussowitsch {
2443c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24441a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24451a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2446c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2447c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2448c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2449ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2450ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24511a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24521a254869SHong Zhang   Mat                B = mat->B;
24531a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2454c87e5d42SMatthew Knepley 
2455c87e5d42SMatthew Knepley   PetscFunctionBegin;
24561a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24571a254869SHong Zhang   if (A->cmap->N == n) {
24589566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24599566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24609566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24619566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24629566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24633ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24641a254869SHong Zhang   } else if (n == 0) {
24651a254869SHong Zhang     if (m) {
24669566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24679371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24689371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24699371c9d4SSatish Balay         if (idx) idx[r] = -1;
24709371c9d4SSatish Balay       }
24719566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24721a254869SHong Zhang     }
24733ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24741a254869SHong Zhang   }
24751a254869SHong Zhang 
24769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24779566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24789566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24799566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24801a254869SHong Zhang 
24811a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24829566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2483ce496241SStefano Zampini   ba = bav;
24841a254869SHong Zhang   bi = b->i;
24851a254869SHong Zhang   bj = b->j;
24869566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24871a254869SHong Zhang   for (r = 0; r < m; r++) {
24881a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24891a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24909371c9d4SSatish Balay       offdiagA[r]   = *ba;
24919371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
24921a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
24931a254869SHong Zhang       offdiagA[r] = 0.0;
24941a254869SHong Zhang 
24951a254869SHong Zhang       /* Find first hole in the cmap */
24961a254869SHong Zhang       for (j = 0; j < ncols; j++) {
24971a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
24981a254869SHong Zhang         if (col > j && j < cstart) {
24991a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25001a254869SHong Zhang           break;
25011a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25021a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25031a254869SHong Zhang           break;
25041a254869SHong Zhang         }
25051a254869SHong Zhang       }
25064e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25071a254869SHong Zhang         /* a hole is outside compressed Bcols */
25081a254869SHong Zhang         if (ncols == 0) {
25091a254869SHong Zhang           if (cstart) {
25101a254869SHong Zhang             offdiagIdx[r] = 0;
25111a254869SHong Zhang           } else offdiagIdx[r] = cend;
25121a254869SHong Zhang         } else { /* ncols > 0 */
25131a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25141a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25151a254869SHong Zhang         }
25161a254869SHong Zhang       }
25171a254869SHong Zhang     }
25181a254869SHong Zhang 
25191a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25209371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25219371c9d4SSatish Balay         offdiagA[r]   = *ba;
25229371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25239371c9d4SSatish Balay       }
25249371c9d4SSatish Balay       ba++;
25259371c9d4SSatish Balay       bj++;
25261a254869SHong Zhang     }
25271a254869SHong Zhang   }
25281a254869SHong Zhang 
25299566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25309566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25311a254869SHong Zhang   for (r = 0; r < m; ++r) {
25321a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2533c87e5d42SMatthew Knepley       a[r] = diagA[r];
25341a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25351a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25361a254869SHong Zhang       a[r] = diagA[r];
25371a254869SHong Zhang       if (idx) {
25381a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2539c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25401a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25411a254869SHong Zhang       }
2542c87e5d42SMatthew Knepley     } else {
2543c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25441a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2545c87e5d42SMatthew Knepley     }
2546c87e5d42SMatthew Knepley   }
25479566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25489566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25499566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25509566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25519566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25529566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25539566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2555c87e5d42SMatthew Knepley }
2556c87e5d42SMatthew Knepley 
2557d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2558d71ae5a4SJacob Faibussowitsch {
2559f6d58c54SBarry Smith   Mat *dummy;
25605494a064SHong Zhang 
25615494a064SHong Zhang   PetscFunctionBegin;
25629566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2563f6d58c54SBarry Smith   *newmat = *dummy;
25649566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25665494a064SHong Zhang }
25675494a064SHong Zhang 
2568ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2569d71ae5a4SJacob Faibussowitsch {
2570bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2571bbead8a2SBarry Smith 
2572bbead8a2SBarry Smith   PetscFunctionBegin;
25739566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25747b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2576bbead8a2SBarry Smith }
2577bbead8a2SBarry Smith 
2578d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2579d71ae5a4SJacob Faibussowitsch {
258073a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
258173a71a0fSBarry Smith 
258273a71a0fSBarry Smith   PetscFunctionBegin;
258308401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25849566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2585679944adSJunchao Zhang   if (x->assembled) {
25869566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2587679944adSJunchao Zhang   } else {
25889566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2589679944adSJunchao Zhang   }
25909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
25919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
25923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
259373a71a0fSBarry Smith }
2594bbead8a2SBarry Smith 
2595ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2596d71ae5a4SJacob Faibussowitsch {
2597b1b1104fSBarry Smith   PetscFunctionBegin;
2598b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2599b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2601b1b1104fSBarry Smith }
2602b1b1104fSBarry Smith 
2603b1b1104fSBarry Smith /*@
2604f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2605f2afee66SBarry Smith 
26062ef1f0ffSBarry Smith   Not Collective
2607f2afee66SBarry Smith 
2608f2afee66SBarry Smith   Input Parameter:
2609f2afee66SBarry Smith . A - the matrix
2610f2afee66SBarry Smith 
2611f2afee66SBarry Smith   Output Parameter:
2612f2afee66SBarry Smith . nz - the number of nonzeros
2613f2afee66SBarry Smith 
2614f2afee66SBarry Smith   Level: advanced
2615f2afee66SBarry Smith 
2616fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2617f2afee66SBarry Smith @*/
2618d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2619d71ae5a4SJacob Faibussowitsch {
2620f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2621f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2622dfebb78cSStefano Zampini   PetscBool   isaij;
2623f2afee66SBarry Smith 
2624f2afee66SBarry Smith   PetscFunctionBegin;
2625dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2626dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2627f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2629f2afee66SBarry Smith }
2630f2afee66SBarry Smith 
2631f2afee66SBarry Smith /*@
2632b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2633b1b1104fSBarry Smith 
2634c3339decSBarry Smith   Collective
2635b1b1104fSBarry Smith 
2636b1b1104fSBarry Smith   Input Parameters:
2637b1b1104fSBarry Smith + A  - the matrix
263811a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2639b1b1104fSBarry Smith 
264096a0c994SBarry Smith   Level: advanced
264196a0c994SBarry Smith 
2642fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2643b1b1104fSBarry Smith @*/
2644d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2645d71ae5a4SJacob Faibussowitsch {
2646b1b1104fSBarry Smith   PetscFunctionBegin;
2647cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2649b1b1104fSBarry Smith }
2650b1b1104fSBarry Smith 
2651d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject)
2652d71ae5a4SJacob Faibussowitsch {
2653b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2654b1b1104fSBarry Smith 
2655b1b1104fSBarry Smith   PetscFunctionBegin;
2656d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2657b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26589566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26591baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2660d0609cedSBarry Smith   PetscOptionsHeadEnd();
26613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2662b1b1104fSBarry Smith }
2663b1b1104fSBarry Smith 
2664ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2665d71ae5a4SJacob Faibussowitsch {
26667d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2667c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26687d68702bSBarry Smith 
26697d68702bSBarry Smith   PetscFunctionBegin;
2670c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26719566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26725519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2673b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26749566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2675b83222d8SBarry Smith     aij->nonew = nonew;
26767d68702bSBarry Smith   }
26779566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26797d68702bSBarry Smith }
26807d68702bSBarry Smith 
2681ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2682d71ae5a4SJacob Faibussowitsch {
26833b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26843b49f96aSBarry Smith 
26853b49f96aSBarry Smith   PetscFunctionBegin;
268608401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26879566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26883b49f96aSBarry Smith   if (d) {
26893b49f96aSBarry Smith     PetscInt rstart;
26909566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
26913b49f96aSBarry Smith     *d += rstart;
26923b49f96aSBarry Smith   }
26933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26943b49f96aSBarry Smith }
26953b49f96aSBarry Smith 
2696ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2697d71ae5a4SJacob Faibussowitsch {
2698a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2699a8ee9fb5SBarry Smith 
2700a8ee9fb5SBarry Smith   PetscFunctionBegin;
27019566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2703a8ee9fb5SBarry Smith }
27043b49f96aSBarry Smith 
270558c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2706dec0b466SHong Zhang {
2707dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2708dec0b466SHong Zhang 
2709dec0b466SHong Zhang   PetscFunctionBegin;
271058c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
271158c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2713dec0b466SHong Zhang }
2714dec0b466SHong Zhang 
2715cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2716cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2717cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2718cda55fadSBarry Smith                                        MatMult_MPIAIJ,
271997304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27207c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27217c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2722f4259b30SLisandro Dalcin                                        NULL,
2723f4259b30SLisandro Dalcin                                        NULL,
2724f4259b30SLisandro Dalcin                                        NULL,
2725f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2726f4259b30SLisandro Dalcin                                        NULL,
2727f4259b30SLisandro Dalcin                                        NULL,
272841f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2729b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
273097304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2731cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2732cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2733cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2734cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
273597304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2736cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2737cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2738cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2739d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2740f4259b30SLisandro Dalcin                                        NULL,
2741f4259b30SLisandro Dalcin                                        NULL,
2742f4259b30SLisandro Dalcin                                        NULL,
2743f4259b30SLisandro Dalcin                                        NULL,
274426cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2745f4259b30SLisandro Dalcin                                        NULL,
2746f4259b30SLisandro Dalcin                                        NULL,
2747a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2748f4259b30SLisandro Dalcin                                        NULL,
2749d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2750f4259b30SLisandro Dalcin                                        NULL,
2751f4259b30SLisandro Dalcin                                        NULL,
2752f4259b30SLisandro Dalcin                                        NULL,
2753f4259b30SLisandro Dalcin                                        NULL,
2754d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27557dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2756cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2757cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2758cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2759d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2760cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27617d68702bSBarry Smith                                        MatShift_MPIAIJ,
276299e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2763564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
276473a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27658a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27668a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2767f4259b30SLisandro Dalcin                                        NULL,
2768f4259b30SLisandro Dalcin                                        NULL,
276993dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2770f4259b30SLisandro Dalcin                                        NULL,
2771cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
277272e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2773f4259b30SLisandro Dalcin                                        NULL,
27747dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2775e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2776e03a110bSBarry Smith                                        MatView_MPIAIJ,
2777f4259b30SLisandro Dalcin                                        NULL,
2778f4259b30SLisandro Dalcin                                        NULL,
2779f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2780f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2781f4259b30SLisandro Dalcin                                        NULL,
2782f4259b30SLisandro Dalcin                                        NULL,
2783f4259b30SLisandro Dalcin                                        NULL,
2784d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2785c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2786f4259b30SLisandro Dalcin                                        NULL,
2787f4259b30SLisandro Dalcin                                        NULL,
2788f4259b30SLisandro Dalcin                                        NULL,
2789f4259b30SLisandro Dalcin                                        NULL,
27903acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2791b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2792f4259b30SLisandro Dalcin                                        NULL,
2793f4259b30SLisandro Dalcin                                        NULL,
2794f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2795f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2796f4259b30SLisandro Dalcin                                        NULL,
2797f4259b30SLisandro Dalcin                                        NULL,
27985bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
27996cff0a6bSPierre Jolivet                                        NULL,
2800f4259b30SLisandro Dalcin                                        NULL,
2801f4259b30SLisandro Dalcin                                        NULL,
2802f4259b30SLisandro Dalcin                                        NULL,
2803f4259b30SLisandro Dalcin                                        NULL,
2804f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2805f4259b30SLisandro Dalcin                                        NULL,
280626be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2807f4259b30SLisandro Dalcin                                        NULL,
2808f4259b30SLisandro Dalcin                                        NULL,
2809cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2810f4259b30SLisandro Dalcin                                        NULL,
2811f4259b30SLisandro Dalcin                                        NULL,
2812f4259b30SLisandro Dalcin                                        NULL,
2813b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28144222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2815f4259b30SLisandro Dalcin                                        NULL,
2816f4259b30SLisandro Dalcin                                        NULL,
28172fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2818f4259b30SLisandro Dalcin                                        NULL,
2819d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
282099cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
282169db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2822f4259b30SLisandro Dalcin                                        NULL,
2823f4259b30SLisandro Dalcin                                        NULL,
2824f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2825f4259b30SLisandro Dalcin                                        NULL,
28265494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2827f4259b30SLisandro Dalcin                                        NULL,
28283b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2829d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2830f4259b30SLisandro Dalcin                                        NULL,
2831c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2832f4259b30SLisandro Dalcin                                        NULL,
2833f4259b30SLisandro Dalcin                                        NULL,
2834b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2835f4259b30SLisandro Dalcin                                        NULL,
2836f4259b30SLisandro Dalcin                                        NULL,
2837f4259b30SLisandro Dalcin                                        NULL,
2838b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2839f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2840a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2841bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2842a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28437dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2844f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2845f4259b30SLisandro Dalcin                                        NULL,
2846f4259b30SLisandro Dalcin                                        NULL,
2847187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2848f4259b30SLisandro Dalcin                                        NULL,
2849f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2850f4259b30SLisandro Dalcin                                        NULL,
2851f4259b30SLisandro Dalcin                                        NULL,
2852f4259b30SLisandro Dalcin                                        NULL,
2853f4259b30SLisandro Dalcin                                        NULL,
285446533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2855f4259b30SLisandro Dalcin                                        NULL,
2856f4259b30SLisandro Dalcin                                        NULL,
28579c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2858a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28594222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2860f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2861f4259b30SLisandro Dalcin                                        NULL,
286272833a62Smarkadams4                                        NULL,
286372833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28642d776b49SBarry Smith                                        NULL,
2865dec0b466SHong Zhang                                        /*150*/ NULL,
2866eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
2867eede4a3fSMark Adams                                        MatGetRowSumAbs_MPIAIJ};
286836ce4990SBarry Smith 
2869ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2870d71ae5a4SJacob Faibussowitsch {
28712e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28722e8a6d31SBarry Smith 
28732e8a6d31SBarry Smith   PetscFunctionBegin;
28749566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28759566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28772e8a6d31SBarry Smith }
28782e8a6d31SBarry Smith 
2879ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2880d71ae5a4SJacob Faibussowitsch {
28812e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28822e8a6d31SBarry Smith 
28832e8a6d31SBarry Smith   PetscFunctionBegin;
28849566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28859566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28872e8a6d31SBarry Smith }
28888a729477SBarry Smith 
2889d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2890d71ae5a4SJacob Faibussowitsch {
2891ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
28925d2a9ed1SStefano Zampini   PetscMPIInt size;
2893a23d5eceSKris Buschelman 
2894a23d5eceSKris Buschelman   PetscFunctionBegin;
2895ad79cf63SBarry Smith   if (B->hash_active) {
2896aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2897ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2898ad79cf63SBarry Smith   }
28999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2901899cda47SBarry Smith 
2902cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2903eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2904cb7b82ddSBarry Smith #else
29059566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2906cb7b82ddSBarry Smith #endif
29079566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29089566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29099566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2910cb7b82ddSBarry Smith 
29119566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2912c508b908SBarry Smith 
2913c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29149566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29159566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29169566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29179566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29189566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2919c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2920cb7b82ddSBarry Smith 
2921c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2922ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29239566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29249566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29259566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29269566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2927c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2928899cda47SBarry Smith 
29299566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2931526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2932cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
293315001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2935a23d5eceSKris Buschelman }
2936a23d5eceSKris Buschelman 
2937ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2938d71ae5a4SJacob Faibussowitsch {
2939ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2940846b4da1SFande Kong 
2941846b4da1SFande Kong   PetscFunctionBegin;
2942846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29439566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29449566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2945846b4da1SFande Kong 
2946846b4da1SFande Kong #if defined(PETSC_USE_CTABLE)
2947eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2948846b4da1SFande Kong #else
29499566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2950846b4da1SFande Kong #endif
29519566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29529566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29539566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2954846b4da1SFande Kong 
29559566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->A));
29569566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->B));
2957846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2958846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2959846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
29603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2961846b4da1SFande Kong }
2962846b4da1SFande Kong 
2963d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2964d71ae5a4SJacob Faibussowitsch {
2965d6dfbf8fSBarry Smith   Mat         mat;
2966416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2967d6dfbf8fSBarry Smith 
29683a40ed3dSBarry Smith   PetscFunctionBegin;
2969f4259b30SLisandro Dalcin   *newmat = NULL;
29709566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29719566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29729566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29739566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2974273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2975e1b6402fSHong Zhang 
2976d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2977501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2978e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2979d6dfbf8fSBarry Smith 
298017699dbbSLois Curfman McInnes   a->size         = oldmat->size;
298117699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2982e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2983e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2984501880eeSStefano Zampini   a->rowindices   = NULL;
2985501880eeSStefano Zampini   a->rowvalues    = NULL;
2986bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
2987d6dfbf8fSBarry Smith 
29889566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
29899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2990420957c1SBarry Smith   if (matin->hash_active) {
2991420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2992420957c1SBarry Smith   } else {
2993420957c1SBarry Smith     mat->preallocated = matin->preallocated;
29942ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
2995aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2996eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2997b1fc9764SSatish Balay #else
29989566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
29999566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
3000b1fc9764SSatish Balay #endif
3001501880eeSStefano Zampini     } else a->colmap = NULL;
30023f41c07dSBarry Smith     if (oldmat->garray) {
3003b1d57f15SBarry Smith       PetscInt len;
3004d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30059566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30069566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3007501880eeSStefano Zampini     } else a->garray = NULL;
3008d6dfbf8fSBarry Smith 
30090de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30100de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30110de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3012aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3013aa624791SPierre Jolivet     if (oldmat->Mvctx) PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
30149566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30159566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3016420957c1SBarry Smith   }
30179566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30188a729477SBarry Smith   *newmat = mat;
30193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30208a729477SBarry Smith }
3021416022c9SBarry Smith 
3022d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3023d71ae5a4SJacob Faibussowitsch {
302452f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
302552f91c60SVaclav Hapla 
302652f91c60SVaclav Hapla   PetscFunctionBegin;
302752f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
302852f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3029c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30309566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30319566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30329566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
303352f91c60SVaclav Hapla   if (isbinary) {
30349566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
303552f91c60SVaclav Hapla   } else if (ishdf5) {
303652f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30379566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
303852f91c60SVaclav Hapla #else
303952f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
304052f91c60SVaclav Hapla #endif
304152f91c60SVaclav Hapla   } else {
304298921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
304352f91c60SVaclav Hapla   }
30443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
304552f91c60SVaclav Hapla }
304652f91c60SVaclav Hapla 
3047d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3048d71ae5a4SJacob Faibussowitsch {
30493ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30503ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30513ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30528fb81238SShri Abhyankar 
30538fb81238SShri Abhyankar   PetscFunctionBegin;
30549566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30558fb81238SShri Abhyankar 
30563ea6fe3dSLisandro Dalcin   /* read in matrix header */
30579566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
305808401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30599371c9d4SSatish Balay   M  = header[1];
30609371c9d4SSatish Balay   N  = header[2];
30619371c9d4SSatish Balay   nz = header[3];
306208401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
306308401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
306408401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
306508ea439dSMark F. Adams 
30663ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30679566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30683ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30693ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30703ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30719566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30738fb81238SShri Abhyankar 
30743ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30759566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3076aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30778fb81238SShri Abhyankar 
30783ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30799566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30819566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
30829371c9d4SSatish Balay   rowidxs[0] = 0;
30839371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
308438b83642SBarry Smith   if (nz != PETSC_MAX_INT) {
30851c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
308608401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
308738b83642SBarry Smith   }
308838b83642SBarry Smith 
30893ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
30909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
30919566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
30929566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
30933ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
30949566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
30959566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
30969566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
30973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30988fb81238SShri Abhyankar }
30998fb81238SShri Abhyankar 
31003782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3101ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3102d71ae5a4SJacob Faibussowitsch {
31034aa3045dSJed Brown   IS          iscol_local;
3104c5e4d11fSDmitry Karpeev   PetscBool   isstride;
3105c5e4d11fSDmitry Karpeev   PetscMPIInt lisstride = 0, gisstride;
31063782ecc7SHong Zhang 
31073782ecc7SHong Zhang   PetscFunctionBegin;
31083782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31099566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31103782ecc7SHong Zhang 
3111c5e4d11fSDmitry Karpeev   if (isstride) {
3112c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31139566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31149566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31159566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
3116c5e4d11fSDmitry Karpeev     if (mstart == start && mlen - mstart == len) lisstride = 1;
3117c5e4d11fSDmitry Karpeev   }
31183782ecc7SHong Zhang 
31191c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3120c5e4d11fSDmitry Karpeev   if (gisstride) {
3121c5e4d11fSDmitry Karpeev     PetscInt N;
31229566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31239566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31249566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31259566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3126c5e4d11fSDmitry Karpeev   } else {
3127c5bfad50SMark F. Adams     PetscInt cbs;
31289566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31299566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31309566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3131b79d0421SJed Brown   }
31323782ecc7SHong Zhang 
31333782ecc7SHong Zhang   *isseq = iscol_local;
31343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3135c5e4d11fSDmitry Karpeev }
31368d2139bdSHong Zhang 
3137ddfdf956SHong Zhang /*
31389c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31399c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3140ddfdf956SHong Zhang 
3141ddfdf956SHong Zhang  Input Parameters:
314227430b45SBarry Smith +   mat - matrix
314327430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31449c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
314527430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3146ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
314727430b45SBarry Smith 
314827430b45SBarry Smith  Output Parameters:
314927430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
315027430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
315127430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
315227430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3153ddfdf956SHong Zhang  */
3154ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[])
3155d71ae5a4SJacob Faibussowitsch {
3156040216a4SHong Zhang   Vec             x, cmap;
3157040216a4SHong Zhang   const PetscInt *is_idx;
3158040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31599c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3160040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3161040216a4SHong Zhang   Mat             B    = a->B;
3162040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3163a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31648b3fa1f7SHong Zhang   MPI_Comm        comm;
31653a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31663782ecc7SHong Zhang 
31673782ecc7SHong Zhang   PetscFunctionBegin;
31689566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31699566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31708b3fa1f7SHong Zhang 
3171ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31729566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31739566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31749566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31759566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31760a351717SHong Zhang 
31779c988bcaSHong Zhang   /* Get start indices */
31789566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3179ddfdf956SHong Zhang   isstart -= ncols;
31809566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3181040216a4SHong Zhang 
31829566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
31839566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
31849566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
31859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3186ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
31878b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3188ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
31899c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
31908b3fa1f7SHong Zhang   }
31919566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
31929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
31939566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
31948b3fa1f7SHong Zhang 
31959c988bcaSHong Zhang   /* Get iscol_d */
31969566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
31979566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
31989566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3199feb78a15SHong Zhang 
32009c988bcaSHong Zhang   /* Get isrow_d */
32019566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3202feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32049566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32059c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32069566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3207feb78a15SHong Zhang 
32089566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32099566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32109566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3211feb78a15SHong Zhang 
32129c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32139566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32149566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3215ddfdf956SHong Zhang 
32169566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
321707250d77SHong Zhang 
32189566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32199566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
322064efcef9SHong Zhang 
32219c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3222ddfdf956SHong Zhang   /* off-process column indices */
32239c988bcaSHong Zhang   count = 0;
32249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3226feb78a15SHong Zhang 
32279566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32289566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32298b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3230f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32319c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32321c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32331c645242SHong Zhang       count++;
32348b3fa1f7SHong Zhang     }
32358b3fa1f7SHong Zhang   }
32369566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32379566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
323807250d77SHong Zhang 
32399566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3240b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3241b6d9b4e0SHong Zhang 
32429566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32439c988bcaSHong Zhang   *garray = cmap1;
32449c988bcaSHong Zhang 
32459566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32469566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32479566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3249040216a4SHong Zhang }
3250040216a4SHong Zhang 
3251b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3252d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3253d71ae5a4SJacob Faibussowitsch {
3254b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32551fd43edeSHong Zhang   Mat         M = NULL;
32563b00a383SHong Zhang   MPI_Comm    comm;
3257b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32583b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3259b20e2604SHong Zhang   PetscInt    n;
32603b00a383SHong Zhang 
32613b00a383SHong Zhang   PetscFunctionBegin;
32629566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32633b00a383SHong Zhang 
32643b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3265b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32669566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
326728b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32683b00a383SHong Zhang 
32699566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
327028b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32713b00a383SHong Zhang 
32729566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
327328b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32743b00a383SHong Zhang 
3275b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3276b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32779566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32789566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
327948a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32809566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32819566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
32823b00a383SHong Zhang 
32833b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
32849c988bcaSHong Zhang     const PetscInt *garray;
3285b20e2604SHong Zhang     PetscInt        BsubN;
32863b00a383SHong Zhang 
3287b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
32889566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
32893b00a383SHong Zhang 
3290b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
32919566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
32929566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
32933b00a383SHong Zhang 
32949c988bcaSHong Zhang     /* Create submatrix M */
32959566063dSJacob Faibussowitsch     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M));
32963b00a383SHong Zhang 
3297b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3298b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
32997cfce09cSHong Zhang 
33009566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3301b20e2604SHong Zhang     n = asub->B->cmap->N;
3302b20e2604SHong Zhang     if (BsubN > n) {
3303c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33047cfce09cSHong Zhang       const PetscInt *idx;
33059c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33069566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33077cfce09cSHong Zhang 
33089566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33097cfce09cSHong Zhang       j = 0;
33109566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3311b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33127cfce09cSHong Zhang         if (j >= BsubN) break;
33139c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33147cfce09cSHong Zhang 
33159c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33167cfce09cSHong Zhang           idx_new[i] = idx[j++];
331798921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33187cfce09cSHong Zhang       }
33199566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33207cfce09cSHong Zhang 
33219566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33229566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33237cfce09cSHong Zhang 
3324b20e2604SHong Zhang     } else if (BsubN < n) {
332598921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3326b20e2604SHong Zhang     }
33277cfce09cSHong Zhang 
33289566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3329b20e2604SHong Zhang     *submat = M;
33303b00a383SHong Zhang 
3331e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33329566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33339566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33343b00a383SHong Zhang 
33359566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33369566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33373b00a383SHong Zhang 
33389566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33399566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33403b00a383SHong Zhang   }
33413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33423b00a383SHong Zhang }
33433b00a383SHong Zhang 
3344d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3345d71ae5a4SJacob Faibussowitsch {
33461358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33473782ecc7SHong Zhang   PetscInt  csize;
334818e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33494a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33503782ecc7SHong Zhang   MPI_Comm  comm;
33513782ecc7SHong Zhang 
33523782ecc7SHong Zhang   PetscFunctionBegin;
3353bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3354a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33558f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33569566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3357d5761cdaSHong Zhang     if (isrow_d) {
3358d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3359d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3360d5761cdaSHong Zhang     } else {
33619566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3362d5761cdaSHong Zhang       if (iscol_local) {
3363d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3364d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3365d5761cdaSHong Zhang       }
3366d5761cdaSHong Zhang     }
33678f69fa7bSHong Zhang   } else {
3368e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
336918e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33709566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33713782ecc7SHong Zhang     if (!n) {
337218e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33733782ecc7SHong Zhang     } else {
33749566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33759566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3376ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33778f69fa7bSHong Zhang     }
33783782ecc7SHong Zhang 
3379e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
338018e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33819566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
338218e627e3SHong Zhang     if (!n) {
338318e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
338418e627e3SHong Zhang     } else {
33859566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
33869566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
338718e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
338818e627e3SHong Zhang     }
338918e627e3SHong Zhang 
33909566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
33911c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
339218e627e3SHong Zhang     sameRowDist = tsameDist[0];
339318e627e3SHong Zhang   }
339418e627e3SHong Zhang 
339518e627e3SHong Zhang   if (sameRowDist) {
3396b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
33973b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
33989566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
33993ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3400b20e2604SHong Zhang     } else { /* sameRowDist */
34013b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34021358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34031358a193SHong Zhang         PetscBool sorted;
34049566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34059566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34069566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
340708401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34081358a193SHong Zhang 
34099566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34101358a193SHong Zhang         if (sorted) {
34111358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34129566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34133ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34143782ecc7SHong Zhang         }
34151358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
341648c0d076SHong Zhang         IS iscol_sub;
34179566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
341848c0d076SHong Zhang         if (iscol_sub) {
34199566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34203ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
342148c0d076SHong Zhang         }
34221358a193SHong Zhang       }
34231358a193SHong Zhang     }
34241358a193SHong Zhang   }
34253782ecc7SHong Zhang 
3426bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34273782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34289566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
342928b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34303782ecc7SHong Zhang   } else {
343148a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34321358a193SHong Zhang   }
34333782ecc7SHong Zhang 
34349566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34359566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34368f69fa7bSHong Zhang 
3437b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34389566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34399566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3440b79d0421SJed Brown   }
34413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34424aa3045dSJed Brown }
34434aa3045dSJed Brown 
3444feb78a15SHong Zhang /*@C
344511a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3446feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3447feb78a15SHong Zhang 
3448d083f849SBarry Smith   Collective
3449feb78a15SHong Zhang 
3450feb78a15SHong Zhang   Input Parameters:
3451feb78a15SHong Zhang + comm   - MPI communicator
3452feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3453b20e2604SHong Zhang . B      - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine
34542ef1f0ffSBarry Smith - garray - global index of `B` columns
3455feb78a15SHong Zhang 
3456feb78a15SHong Zhang   Output Parameter:
34572ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
345827430b45SBarry Smith 
3459feb78a15SHong Zhang   Level: advanced
3460feb78a15SHong Zhang 
3461feb78a15SHong Zhang   Notes:
346211a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
346311a5261eSBarry Smith 
34642ef1f0ffSBarry Smith   `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore.
3465feb78a15SHong Zhang 
34661cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3467feb78a15SHong Zhang @*/
3468d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat)
3469d71ae5a4SJacob Faibussowitsch {
3470feb78a15SHong Zhang   Mat_MPIAIJ        *maij;
3471e489de8fSHong Zhang   Mat_SeqAIJ        *b  = (Mat_SeqAIJ *)B->data, *bnew;
3472a5348796SHong Zhang   PetscInt          *oi = b->i, *oj = b->j, i, nz, col;
3473ce496241SStefano Zampini   const PetscScalar *oa;
3474e489de8fSHong Zhang   Mat                Bnew;
3475feb78a15SHong Zhang   PetscInt           m, n, N;
34764ab4d6f4SRichard Tran Mills   MatType            mpi_mat_type;
3477feb78a15SHong Zhang 
3478feb78a15SHong Zhang   PetscFunctionBegin;
34799566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
34809566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
348108401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
348237a5e0faSPierre Jolivet   PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3483b6d9b4e0SHong Zhang   /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */
348408401ef6SPierre Jolivet   /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */
3485feb78a15SHong Zhang 
3486e489de8fSHong Zhang   /* Get global columns of mat */
34871c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm));
3488feb78a15SHong Zhang 
34899566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N));
34904ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
34914ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
34924ab4d6f4SRichard Tran Mills   PetscCall(MatSetType(*mat, mpi_mat_type));
34934ab4d6f4SRichard Tran Mills 
349437a5e0faSPierre Jolivet   if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs));
3495feb78a15SHong Zhang   maij = (Mat_MPIAIJ *)(*mat)->data;
3496feb78a15SHong Zhang 
3497feb78a15SHong Zhang   (*mat)->preallocated = PETSC_TRUE;
3498feb78a15SHong Zhang 
34999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
35009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
3501feb78a15SHong Zhang 
3502e489de8fSHong Zhang   /* Set A as diagonal portion of *mat */
3503feb78a15SHong Zhang   maij->A = A;
3504feb78a15SHong Zhang 
3505a5348796SHong Zhang   nz = oi[m];
3506a5348796SHong Zhang   for (i = 0; i < nz; i++) {
3507a5348796SHong Zhang     col   = oj[i];
3508a5348796SHong Zhang     oj[i] = garray[col];
3509feb78a15SHong Zhang   }
3510feb78a15SHong Zhang 
3511e489de8fSHong Zhang   /* Set Bnew as off-diagonal portion of *mat */
35129566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &oa));
35139566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew));
35149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &oa));
3515e489de8fSHong Zhang   bnew        = (Mat_SeqAIJ *)Bnew->data;
3516e489de8fSHong Zhang   bnew->maxnz = b->maxnz; /* allocated nonzeros of B */
3517e489de8fSHong Zhang   maij->B     = Bnew;
3518d5761cdaSHong Zhang 
351908401ef6SPierre Jolivet   PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N);
3520d5761cdaSHong Zhang 
3521e489de8fSHong Zhang   b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */
3522d5761cdaSHong Zhang   b->free_a       = PETSC_FALSE;
3523d5761cdaSHong Zhang   b->free_ij      = PETSC_FALSE;
35249566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&B));
3525d5761cdaSHong Zhang 
3526e489de8fSHong Zhang   bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */
3527e489de8fSHong Zhang   bnew->free_a       = PETSC_TRUE;
3528e489de8fSHong Zhang   bnew->free_ij      = PETSC_TRUE;
3529feb78a15SHong Zhang 
3530a5348796SHong Zhang   /* condense columns of maij->B */
35319566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
35329566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
35339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
35349566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
35359566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3537feb78a15SHong Zhang }
3538feb78a15SHong Zhang 
3539ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35404aa3045dSJed Brown 
3541d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3542d71ae5a4SJacob Faibussowitsch {
354398b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
354485f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
354598b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35461fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
354798b658c4SHong Zhang   MatScalar      *aa;
354800e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3549a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
355098b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
355198b658c4SHong Zhang   IS              iscol_sub, iscmap;
355298b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
355318e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3554a31a438cSHong Zhang   MPI_Comm        comm;
35557e2c5f70SBarry Smith 
3556a0ff6018SBarry Smith   PetscFunctionBegin;
35579566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3558d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35599566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
356028b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35619566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3562d5761cdaSHong Zhang 
35639566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
356428b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3565d5761cdaSHong Zhang 
35669566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
356728b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3568d5761cdaSHong Zhang 
35699566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3570d5761cdaSHong Zhang 
3571d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35723b00a383SHong Zhang     PetscBool flg;
35733b00a383SHong Zhang 
35749566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35759566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3576bcae8d28SHong Zhang 
35773b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3578366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35799566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3580366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
35811c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3582366a327dSHong Zhang     if (allcolumns) {
3583366a327dSHong Zhang       iscol_sub = iscol_local;
35849566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35859566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3586366a327dSHong Zhang 
35873b00a383SHong Zhang     } else {
35881358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3589244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35909566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
35919566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
35929566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
35938d2139bdSHong Zhang       count = 0;
3594a31a438cSHong Zhang       k     = 0;
3595a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3596a31a438cSHong Zhang         j = is_idx[i];
3597a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3598a31a438cSHong Zhang           /* diagonal part of mat */
35998d2139bdSHong Zhang           idx[count]     = j;
3600366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36014a3daf6eSHong Zhang         } else if (Bn) {
3602a31a438cSHong Zhang           /* off-diagonal part of mat */
3603a31a438cSHong Zhang           if (j == garray[k]) {
36048d2139bdSHong Zhang             idx[count]     = j;
3605a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3606a31a438cSHong Zhang           } else if (j > garray[k]) {
3607a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3608a31a438cSHong Zhang             if (j == garray[k]) {
3609a31a438cSHong Zhang               idx[count]     = j;
3610a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36118d2139bdSHong Zhang             }
36128d2139bdSHong Zhang           }
36138d2139bdSHong Zhang         }
36148d2139bdSHong Zhang       }
36159566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36168d2139bdSHong Zhang 
36179566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36189566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36199566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3620b6d9b4e0SHong Zhang 
36219566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3622a31a438cSHong Zhang     }
36238b3fa1f7SHong Zhang 
36243b00a383SHong Zhang     /* (3) Create sequential Msub */
36259566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3626d5761cdaSHong Zhang   }
36278d2139bdSHong Zhang 
36289566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
362998b658c4SHong Zhang   aij = (Mat_SeqAIJ *)(Msub)->data;
363098b658c4SHong Zhang   ii  = aij->i;
36319566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3632a0ff6018SBarry Smith 
3633a0ff6018SBarry Smith   /*
3634a0ff6018SBarry Smith       m - number of local rows
3635a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3636a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3637a0ff6018SBarry Smith   */
36389566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
363998b658c4SHong Zhang 
36403b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36413b00a383SHong Zhang     /* (4) Create parallel newmat */
364298b658c4SHong Zhang     PetscMPIInt rank, size;
3643bcae8d28SHong Zhang     PetscInt    csize;
364498b658c4SHong Zhang 
36459566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36469566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
364700e6dbe6SBarry Smith 
3648a0ff6018SBarry Smith     /*
364900e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
365000e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3651a0ff6018SBarry Smith     */
365200e6dbe6SBarry Smith 
365300e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36549566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36556a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36569566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3657a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3658e2c4fddaSBarry Smith         nlocal = m;
36596a6a5d1dSBarry Smith       } else {
3660a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3661ab50ec6bSBarry Smith       }
3662ab50ec6bSBarry Smith     } else {
36636a6a5d1dSBarry Smith       nlocal = csize;
36646a6a5d1dSBarry Smith     }
36659566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
366600e6dbe6SBarry Smith     rstart = rend - nlocal;
3667aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
366800e6dbe6SBarry Smith 
366900e6dbe6SBarry Smith     /* next, compute all the lengths */
367098b658c4SHong Zhang     jj = aij->j;
36719566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
367200e6dbe6SBarry Smith     olens = dlens + m;
367300e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
367400e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
367500e6dbe6SBarry Smith       olen = 0;
367600e6dbe6SBarry Smith       dlen = 0;
367700e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
367815b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
367900e6dbe6SBarry Smith         else dlen++;
368000e6dbe6SBarry Smith         jj++;
368100e6dbe6SBarry Smith       }
368200e6dbe6SBarry Smith       olens[i] = olen;
368300e6dbe6SBarry Smith       dlens[i] = dlen;
368400e6dbe6SBarry Smith     }
3685b6d9b4e0SHong Zhang 
36869566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36879566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
368898b658c4SHong Zhang 
36899566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36909566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
36919566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
36929566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
36939566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
36949566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3695d5761cdaSHong Zhang 
3696d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3697a0ff6018SBarry Smith     M = *newmat;
36989566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
369908401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
37009566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3701c48de900SBarry Smith     /*
3702c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3703c48de900SBarry Smith        rather than the slower MatSetValues().
3704c48de900SBarry Smith     */
3705c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3706c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3707a0ff6018SBarry Smith   }
3708548ecf4dSHong Zhang 
37093b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37119566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
371298b658c4SHong Zhang 
371398b658c4SHong Zhang   jj = aij->j;
37149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3715a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3716a0ff6018SBarry Smith     row = rstart + i;
371700e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
371815b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37199566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37209371c9d4SSatish Balay     jj += nz;
37219371c9d4SSatish Balay     aa += nz;
3722a0ff6018SBarry Smith   }
37239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37249566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3725a0ff6018SBarry Smith 
37269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37279566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3728fee21e36SBarry Smith 
37299566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
373098b658c4SHong Zhang 
373198b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3732fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37333b00a383SHong Zhang     *newmat = M;
3734f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37359566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
373698b658c4SHong Zhang 
3737f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37389566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
373998b658c4SHong Zhang 
3740f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37419566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3742bcae8d28SHong Zhang 
3743bcae8d28SHong Zhang     if (iscol_local) {
3744f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37459566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3746bcae8d28SHong Zhang     }
374798b658c4SHong Zhang   }
37483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3749a0ff6018SBarry Smith }
3750273d9f13SBarry Smith 
3751df40acb1SHong Zhang /*
3752df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3753df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3754df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3755df40acb1SHong Zhang 
375611a5261eSBarry Smith   This requires a sequential iscol with all indices.
3757df40acb1SHong Zhang */
3758d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3759d71ae5a4SJacob Faibussowitsch {
3760df40acb1SHong Zhang   PetscMPIInt rank, size;
3761df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3762df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3763df40acb1SHong Zhang   Mat         M, Mreuse;
376498b658c4SHong Zhang   MatScalar  *aa, *vwork;
3765df40acb1SHong Zhang   MPI_Comm    comm;
3766df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37670b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3768df40acb1SHong Zhang 
3769df40acb1SHong Zhang   PetscFunctionBegin;
37709566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37719566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3773df40acb1SHong Zhang 
37740b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37759566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37769566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37770b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
37781c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37790b27a90eSHong Zhang 
3780df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37819566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
378228b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37839566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3784df40acb1SHong Zhang   } else {
37859566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3786df40acb1SHong Zhang   }
3787df40acb1SHong Zhang 
3788df40acb1SHong Zhang   /*
3789df40acb1SHong Zhang       m - number of local rows
3790df40acb1SHong Zhang       n - number of columns (same on all processors)
3791df40acb1SHong Zhang       rstart - first row in new global matrix generated
3792df40acb1SHong Zhang   */
37939566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
37949566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3795df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
3796df40acb1SHong Zhang     aij = (Mat_SeqAIJ *)(Mreuse)->data;
3797df40acb1SHong Zhang     ii  = aij->i;
3798df40acb1SHong Zhang     jj  = aij->j;
3799df40acb1SHong Zhang 
3800df40acb1SHong Zhang     /*
3801df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3802df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3803df40acb1SHong Zhang     */
3804df40acb1SHong Zhang 
3805df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3806df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38079566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3808df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3809df40acb1SHong Zhang         nlocal = m;
3810df40acb1SHong Zhang       } else {
3811df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3812df40acb1SHong Zhang       }
3813df40acb1SHong Zhang     } else {
3814df40acb1SHong Zhang       nlocal = csize;
3815df40acb1SHong Zhang     }
38169566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3817df40acb1SHong Zhang     rstart = rend - nlocal;
3818aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3819df40acb1SHong Zhang 
3820df40acb1SHong Zhang     /* next, compute all the lengths */
38219566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3822df40acb1SHong Zhang     olens = dlens + m;
3823df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3824df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3825df40acb1SHong Zhang       olen = 0;
3826df40acb1SHong Zhang       dlen = 0;
3827df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3828df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3829df40acb1SHong Zhang         else dlen++;
3830df40acb1SHong Zhang         jj++;
3831df40acb1SHong Zhang       }
3832df40acb1SHong Zhang       olens[i] = olen;
3833df40acb1SHong Zhang       dlens[i] = dlen;
3834df40acb1SHong Zhang     }
38359566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38369566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38379566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38389566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38399566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38409566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3841df40acb1SHong Zhang   } else {
3842df40acb1SHong Zhang     PetscInt ml, nl;
3843df40acb1SHong Zhang 
3844df40acb1SHong Zhang     M = *newmat;
38459566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
384608401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38479566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3848df40acb1SHong Zhang     /*
3849df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3850df40acb1SHong Zhang        rather than the slower MatSetValues().
3851df40acb1SHong Zhang     */
3852df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3853df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3854df40acb1SHong Zhang   }
38559566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
3856df40acb1SHong Zhang   aij = (Mat_SeqAIJ *)(Mreuse)->data;
3857df40acb1SHong Zhang   ii  = aij->i;
3858df40acb1SHong Zhang   jj  = aij->j;
38592e5835c6SStefano Zampini 
38602e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38619566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3862df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3863df40acb1SHong Zhang     row   = rstart + i;
3864df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38659371c9d4SSatish Balay     cwork = jj;
38668e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38679371c9d4SSatish Balay     vwork = aa;
38688e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38699566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3870df40acb1SHong Zhang   }
38719566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3872df40acb1SHong Zhang 
38739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3875df40acb1SHong Zhang   *newmat = M;
3876df40acb1SHong Zhang 
3877df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3878df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38799566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38809566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3881df40acb1SHong Zhang   }
38823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3883df40acb1SHong Zhang }
3884df40acb1SHong Zhang 
3885ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3886d71ae5a4SJacob Faibussowitsch {
38876a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
3888899cda47SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii;
3889ccd8e176SBarry Smith   const PetscInt *JJ;
3890eeb24464SBarry Smith   PetscBool       nooffprocentries;
38916a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3892ccd8e176SBarry Smith 
3893ccd8e176SBarry Smith   PetscFunctionBegin;
3894aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]);
3895899cda47SBarry Smith 
38969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
38979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3898d0f46423SBarry Smith   m      = B->rmap->n;
3899d0f46423SBarry Smith   cstart = B->cmap->rstart;
3900d0f46423SBarry Smith   cend   = B->cmap->rend;
3901d0f46423SBarry Smith   rstart = B->rmap->rstart;
3902899cda47SBarry Smith 
39039566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3904ccd8e176SBarry Smith 
390576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39068f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3907ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39088e3a54c0SPierre Jolivet       JJ  = PetscSafePointerPlusOffset(J, Ii[i]);
390908401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
391008401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
391108401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3912ecc77c7aSBarry Smith     }
391376bd3646SJed Brown   }
3914ecc77c7aSBarry Smith 
39158f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3916b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39178e3a54c0SPierre Jolivet     JJ      = PetscSafePointerPlusOffset(J, Ii[i]);
3918ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3919ccd8e176SBarry Smith     d       = 0;
39200daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39210daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3922ccd8e176SBarry Smith     }
3923ccd8e176SBarry Smith     d_nnz[i] = d;
3924ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3925ccd8e176SBarry Smith   }
39269566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39279566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3928ccd8e176SBarry Smith 
39298f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3930ccd8e176SBarry Smith     ii = i + rstart;
39318e3a54c0SPierre Jolivet     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES));
3932ccd8e176SBarry Smith   }
3933eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3934eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39359566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3937eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3938ccd8e176SBarry Smith 
39396a3d2595SBarry Smith   /* count number of entries below block diagonal */
39406a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39416a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39426a3d2595SBarry Smith   Aij->ld = ld;
39436a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39446a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39456a3d2595SBarry Smith     j   = 0;
3946ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39476a3d2595SBarry Smith     ld[i] = j;
3948720a2405SPierre Jolivet     if (J) J += nnz;
39496a3d2595SBarry Smith   }
39506a3d2595SBarry Smith 
39519566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3953ccd8e176SBarry Smith }
3954ccd8e176SBarry Smith 
39551eea217eSSatish Balay /*@
395611a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3957ccd8e176SBarry Smith   (the default parallel PETSc format).
3958ccd8e176SBarry Smith 
3959d083f849SBarry Smith   Collective
3960ccd8e176SBarry Smith 
3961ccd8e176SBarry Smith   Input Parameters:
3962a1661176SMatthew Knepley + B - the matrix
3963d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
3964d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
3965ccd8e176SBarry Smith - v - optional values in the matrix
3966ccd8e176SBarry Smith 
3967ccd8e176SBarry Smith   Level: developer
3968ccd8e176SBarry Smith 
396912251496SSatish Balay   Notes:
39702ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39712ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
397211a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
397312251496SSatish Balay 
39742ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
397512251496SSatish Balay 
3976a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3977a4bd8bc0SBarry Smith 
3978a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3979a4bd8bc0SBarry Smith 
3980a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3981a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3982a4bd8bc0SBarry Smith 
398312251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
398412251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3985c5e4d11fSDmitry Karpeev   as shown
398627430b45SBarry Smith .vb
398727430b45SBarry Smith         1 0 0
398827430b45SBarry Smith         2 0 3     P0
398927430b45SBarry Smith        -------
399027430b45SBarry Smith         4 5 6     P1
399127430b45SBarry Smith 
399227430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
399327430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
399427430b45SBarry Smith         j =  {0,0,2}  [size = 3]
399527430b45SBarry Smith         v =  {1,2,3}  [size = 3]
399627430b45SBarry Smith 
399727430b45SBarry Smith      Process1 [P1] rows_owned=[2]
399827430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
399927430b45SBarry Smith         j =  {0,1,2}  [size = 3]
400027430b45SBarry Smith         v =  {4,5,6}  [size = 3]
400127430b45SBarry Smith .ve
400212251496SSatish Balay 
4003fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4004a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4005ccd8e176SBarry Smith @*/
4006d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4007d71ae5a4SJacob Faibussowitsch {
4008ccd8e176SBarry Smith   PetscFunctionBegin;
4009cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4011ccd8e176SBarry Smith }
4012ccd8e176SBarry Smith 
4013273d9f13SBarry Smith /*@C
401411a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4015273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4016273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
401720f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4018273d9f13SBarry Smith 
4019d083f849SBarry Smith   Collective
4020273d9f13SBarry Smith 
4021273d9f13SBarry Smith   Input Parameters:
40221c4f3114SJed Brown + B     - the matrix
4023273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4024273d9f13SBarry Smith            (same value is used for all local rows)
4025273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4026273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40272ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4028273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40293287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40303287b5eaSJed Brown            the diagonal entry even if it is zero.
4031273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4032273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4033273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4034273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40352ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4036273d9f13SBarry Smith            structure. The size of this array is equal to the number
4037273d9f13SBarry Smith            of local rows, i.e 'm'.
4038273d9f13SBarry Smith 
40392920cce0SJacob Faibussowitsch   Example Usage:
404027430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
404127430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
404227430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
404327430b45SBarry Smith   as follows
404427430b45SBarry Smith 
404527430b45SBarry Smith .vb
404627430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
404727430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
404827430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
404927430b45SBarry Smith     -------------------------------------
405027430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
405127430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
405227430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
405327430b45SBarry Smith     -------------------------------------
405427430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
405527430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
405627430b45SBarry Smith .ve
405727430b45SBarry Smith 
405827430b45SBarry Smith   This can be represented as a collection of submatrices as
405927430b45SBarry Smith .vb
406027430b45SBarry Smith       A B C
406127430b45SBarry Smith       D E F
406227430b45SBarry Smith       G H I
406327430b45SBarry Smith .ve
406427430b45SBarry Smith 
406527430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
406627430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
406727430b45SBarry Smith 
406827430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
406927430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407027430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
407127430b45SBarry Smith 
407227430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
407327430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
407427430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
407527430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
407627430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
407727430b45SBarry Smith   matrix, ans [DF] as another `MATSEQAIJ` matrix.
407827430b45SBarry Smith 
407920f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
408020f4b53cSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
408127430b45SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
408220f4b53cSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
408327430b45SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
408420f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
408527430b45SBarry Smith .vb
408627430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
408727430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
408827430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
408927430b45SBarry Smith .ve
409020f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
409127430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
409227430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
409327430b45SBarry Smith   34 values.
409427430b45SBarry Smith 
409520f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
409627430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
409720f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
409827430b45SBarry Smith .vb
409927430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
410027430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
410127430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
410227430b45SBarry Smith .ve
410327430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
410427430b45SBarry Smith   hence pre-allocation is perfect.
410527430b45SBarry Smith 
410627430b45SBarry Smith   Level: intermediate
410727430b45SBarry Smith 
410827430b45SBarry Smith   Notes:
410949a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
411049a6f317SBarry Smith 
411127430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41120598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4113651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4114273d9f13SBarry Smith 
4115273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4116273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4117273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4118273d9f13SBarry Smith 
4119273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4120a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4121a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4122a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4123a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4124a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4125a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4126a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4127a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4128273d9f13SBarry Smith 
41292ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4130273d9f13SBarry Smith 
413127430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4132aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
413327430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4134aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4135aa95bbe8SBarry Smith 
41361cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4137a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4138273d9f13SBarry Smith @*/
4139d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4140d71ae5a4SJacob Faibussowitsch {
4141273d9f13SBarry Smith   PetscFunctionBegin;
41426ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41436ba663aaSJed Brown   PetscValidType(B, 1);
4144cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4146273d9f13SBarry Smith }
4147273d9f13SBarry Smith 
414858d36128SBarry Smith /*@
414911a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41508f8f2f0dSBarry Smith   CSR format for the local rows.
41512fb0ec9aSBarry Smith 
4152d083f849SBarry Smith   Collective
41532fb0ec9aSBarry Smith 
41542fb0ec9aSBarry Smith   Input Parameters:
41552fb0ec9aSBarry Smith + comm - MPI communicator
415611a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41572fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4158d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4159d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4160d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4161d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41625693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41635693b835SJunchao Zhang . j    - global column indices
4164f1f2ae84SBarry Smith - a    - optional matrix values
41652fb0ec9aSBarry Smith 
41662fb0ec9aSBarry Smith   Output Parameter:
41672fb0ec9aSBarry Smith . mat - the matrix
416803bfb495SBarry Smith 
41692fb0ec9aSBarry Smith   Level: intermediate
41702fb0ec9aSBarry Smith 
41712fb0ec9aSBarry Smith   Notes:
41722ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
41732fb0ec9aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
41745693b835SJunchao Zhang   called this routine. Use `MatCreateMPIAIJWithSplitArray()` to avoid needing to copy the arrays.
41752fb0ec9aSBarry Smith 
41762ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
417712251496SSatish Balay 
41785693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4179a4bd8bc0SBarry Smith 
41805693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4181a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4182a4bd8bc0SBarry Smith 
418312251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
418412251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
4185c5e4d11fSDmitry Karpeev   as shown
41862ef1f0ffSBarry Smith .vb
41872ef1f0ffSBarry Smith         1 0 0
41882ef1f0ffSBarry Smith         2 0 3     P0
41892ef1f0ffSBarry Smith        -------
41902ef1f0ffSBarry Smith         4 5 6     P1
41918f8f2f0dSBarry Smith 
41922ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
41932ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
41942ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
41952ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
41962fb0ec9aSBarry Smith 
41972ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
41982ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
41992ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
42002ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
42012ef1f0ffSBarry Smith .ve
42022ef1f0ffSBarry Smith 
42031cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIK`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
42045693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42052fb0ec9aSBarry Smith @*/
4206d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4207d71ae5a4SJacob Faibussowitsch {
42082fb0ec9aSBarry Smith   PetscFunctionBegin;
420908401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
421008401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42119566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42129566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42139566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42149566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42159566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42172fb0ec9aSBarry Smith }
42182fb0ec9aSBarry Smith 
42198f8f2f0dSBarry Smith /*@
422011a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42212ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42222ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42236a3d2595SBarry Smith 
42246a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42258f8f2f0dSBarry Smith 
42268f8f2f0dSBarry Smith   Collective
42278f8f2f0dSBarry Smith 
42288f8f2f0dSBarry Smith   Input Parameters:
42298f8f2f0dSBarry Smith + mat - the matrix
423011a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42318f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
423211a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42338f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
423411a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
423511a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42368f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42378f8f2f0dSBarry Smith . J   - column indices
42388f8f2f0dSBarry Smith - v   - matrix values
42398f8f2f0dSBarry Smith 
42402ef1f0ffSBarry Smith   Level: deprecated
42418f8f2f0dSBarry Smith 
42421cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4243a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42448f8f2f0dSBarry Smith @*/
4245d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4246d71ae5a4SJacob Faibussowitsch {
42476a3d2595SBarry Smith   PetscInt        nnz, i;
42488f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42498f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4250fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4251fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42528f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42536a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42546a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42558f8f2f0dSBarry Smith 
42568f8f2f0dSBarry Smith   PetscFunctionBegin;
4257aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
425808401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
425908401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
426008401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42618f8f2f0dSBarry Smith 
42629566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42639566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42648f8f2f0dSBarry Smith 
42658f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42664c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42674c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42684c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42694c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42704c17f1ccSBarry Smith       }
42714c17f1ccSBarry Smith     }
42728f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42738f8f2f0dSBarry Smith     Iii = Ii[i];
42748f8f2f0dSBarry Smith     ldi = ld[i];
42758f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42769566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42779566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42789566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42798f8f2f0dSBarry Smith     ad += md;
42808f8f2f0dSBarry Smith     ao += nnz - md;
42818f8f2f0dSBarry Smith   }
42828f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42838f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42849566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42859566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42869566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42879566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42889566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
42918f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
42923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42938f8f2f0dSBarry Smith }
42948f8f2f0dSBarry Smith 
42956a3d2595SBarry Smith /*@
429611a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
42976a3d2595SBarry Smith 
42986a3d2595SBarry Smith   Collective
42996a3d2595SBarry Smith 
43006a3d2595SBarry Smith   Input Parameters:
43016a3d2595SBarry Smith + mat - the matrix
43026a3d2595SBarry Smith - v   - matrix values, stored by row
43036a3d2595SBarry Smith 
43046a3d2595SBarry Smith   Level: intermediate
43056a3d2595SBarry Smith 
4306a4bd8bc0SBarry Smith   Notes:
43076a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43086a3d2595SBarry Smith 
4309a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4310a4bd8bc0SBarry Smith 
43111cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4312a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43136a3d2595SBarry Smith @*/
4314d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4315d71ae5a4SJacob Faibussowitsch {
43166a3d2595SBarry Smith   PetscInt        nnz, i, m;
43176a3d2595SBarry Smith   PetscBool       nooffprocentries;
43186a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43196a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43206a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43216a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43226a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43236a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43246a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43256a3d2595SBarry Smith 
43266a3d2595SBarry Smith   PetscFunctionBegin;
43276a3d2595SBarry Smith   m = mat->rmap->n;
43286a3d2595SBarry Smith 
43296a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43306a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43316a3d2595SBarry Smith   Iii = 0;
43326a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43336a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43346a3d2595SBarry Smith     ldi = ld[i];
43356a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43366a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43376a3d2595SBarry Smith     ad += md;
4338810441c8SPierre Jolivet     if (ao) {
4339810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4340810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43416a3d2595SBarry Smith       ao += nnz - md;
4342810441c8SPierre Jolivet     }
43436a3d2595SBarry Smith     Iii += nnz;
43446a3d2595SBarry Smith   }
43456a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43466a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43476a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43486a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43496a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43506a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43516a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43526a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43536a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43546a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43566a3d2595SBarry Smith }
43576a3d2595SBarry Smith 
4358273d9f13SBarry Smith /*@C
435911a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4360273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4361273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43622ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4363273d9f13SBarry Smith 
4364d083f849SBarry Smith   Collective
4365273d9f13SBarry Smith 
4366273d9f13SBarry Smith   Input Parameters:
4367273d9f13SBarry Smith + comm  - MPI communicator
436811a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4369273d9f13SBarry Smith            This value should be the same as the local size used in creating the
4370273d9f13SBarry Smith            y vector for the matrix-vector product y = Ax.
4371273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
437245f401ebSJose E. Roman        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4373273d9f13SBarry Smith        calculated if N is given) For square matrices n is almost always m.
437411a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
437511a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4376273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4377273d9f13SBarry Smith            (same value is used for all local rows)
4378273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4379273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
43802ef1f0ffSBarry Smith            or `NULL`, if `d_nz` is used to specify the nonzero structure.
4381273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
4382273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4383273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4384273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4385273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
43862ef1f0ffSBarry Smith            each row) or `NULL`, if `o_nz` is used to specify the nonzero
4387273d9f13SBarry Smith            structure. The size of this array is equal to the number
4388273d9f13SBarry Smith            of local rows, i.e 'm'.
4389273d9f13SBarry Smith 
4390273d9f13SBarry Smith   Output Parameter:
4391273d9f13SBarry Smith . A - the matrix
4392273d9f13SBarry Smith 
439327430b45SBarry Smith   Options Database Keys:
439427430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
439527430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
439627430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
439727430b45SBarry Smith         See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the vecscatter be viewed as a matrix.
439827430b45SBarry Smith         Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
439927430b45SBarry Smith 
44002ef1f0ffSBarry Smith   Level: intermediate
44012ef1f0ffSBarry Smith 
440227430b45SBarry Smith   Notes:
440377433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4404f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
440511a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4406175b88e8SBarry Smith 
440749a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
440849a6f317SBarry Smith 
44092ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44102ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4411273d9f13SBarry Smith   storage requirements for this matrix.
4412273d9f13SBarry Smith 
441311a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4414273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4415273d9f13SBarry Smith   that argument.
4416273d9f13SBarry Smith 
4417273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4418273d9f13SBarry Smith   (possibly both).
4419273d9f13SBarry Smith 
442033a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
442133a7c187SSatish Balay   first m0 rows belong to process 0, the next m1 rows belong to
442233a7c187SSatish Balay   process 1, the next m2 rows belong to process 2 etc.. where
442333a7c187SSatish Balay   m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores
442433a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4425273d9f13SBarry Smith 
442633a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
442733a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4428df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
442933a7c187SSatish Balay 
443033a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
443133a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
443233a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
443333a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
443433a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
443533a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
443633a7c187SSatish Balay   illustrates this concept.
443733a7c187SSatish Balay 
443833a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
443933a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
444033a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
444133a7c187SSatish Balay   local matrix (a rectangular submatrix).
4442273d9f13SBarry Smith 
44432ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4444273d9f13SBarry Smith 
444597d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44462ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4447da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4448da57b5cdSKarl Rupp .vb
44492ef1f0ffSBarry Smith   MatCreate(..., &A);
44502ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44512ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44522ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4453da57b5cdSKarl Rupp .ve
445497d05335SKris Buschelman 
4455273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4456273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4457273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4458273d9f13SBarry Smith 
44592920cce0SJacob Faibussowitsch   Example Usage:
4460273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4461273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4462273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4463efc377ccSKarl Rupp   as follows
4464273d9f13SBarry Smith 
4465273d9f13SBarry Smith .vb
4466273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4467273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4468273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4469273d9f13SBarry Smith     -------------------------------------
4470273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4471273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4472273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4473273d9f13SBarry Smith     -------------------------------------
4474273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4475273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4476273d9f13SBarry Smith .ve
4477273d9f13SBarry Smith 
4478da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4479273d9f13SBarry Smith 
4480273d9f13SBarry Smith .vb
4481273d9f13SBarry Smith       A B C
4482273d9f13SBarry Smith       D E F
4483273d9f13SBarry Smith       G H I
4484273d9f13SBarry Smith .ve
4485273d9f13SBarry Smith 
4486273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4487273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4488273d9f13SBarry Smith 
4489273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4490273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4491273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4492273d9f13SBarry Smith 
4493273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4494273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4495273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4496273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
449727430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
4498273d9f13SBarry Smith   matrix, ans [DF] as another SeqAIJ matrix.
4499273d9f13SBarry Smith 
45002ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45012ef1f0ffSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
4502273d9f13SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
45032ef1f0ffSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
4504273d9f13SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45052ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4506273d9f13SBarry Smith .vb
450727430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
450827430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
450927430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4510273d9f13SBarry Smith .ve
45112ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4512273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4513273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4514273d9f13SBarry Smith   34 values.
4515273d9f13SBarry Smith 
45162ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4517a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4518da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4519273d9f13SBarry Smith .vb
452027430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
452127430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
452227430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4523273d9f13SBarry Smith .ve
4524273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4525273d9f13SBarry Smith   hence pre-allocation is perfect.
4526273d9f13SBarry Smith 
45271cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4528db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`
4529273d9f13SBarry Smith @*/
4530d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4531d71ae5a4SJacob Faibussowitsch {
4532b1d57f15SBarry Smith   PetscMPIInt size;
4533273d9f13SBarry Smith 
4534273d9f13SBarry Smith   PetscFunctionBegin;
45359566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45369566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45379566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4538273d9f13SBarry Smith   if (size > 1) {
45399566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45409566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4541273d9f13SBarry Smith   } else {
45429566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45439566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4544273d9f13SBarry Smith   }
45453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4546273d9f13SBarry Smith }
4547195d93cdSBarry Smith 
45480b98dbb4SBarry Smith /*MC
45490b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix
45500b98dbb4SBarry Smith 
45510b98dbb4SBarry Smith     Synopsis:
45520b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45530b98dbb4SBarry Smith 
45540b98dbb4SBarry Smith     Not Collective
45550b98dbb4SBarry Smith 
45560b98dbb4SBarry Smith     Input Parameter:
45570b98dbb4SBarry Smith .   A - the `MATMPIAIJ` matrix
45580b98dbb4SBarry Smith 
45590b98dbb4SBarry Smith     Output Parameters:
45600b98dbb4SBarry Smith +   Ad - the diagonal portion of the matrix
45614cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45622ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45630b98dbb4SBarry Smith -   ierr - error code
45640b98dbb4SBarry Smith 
45650b98dbb4SBarry Smith      Level: advanced
45660b98dbb4SBarry Smith 
45670b98dbb4SBarry Smith     Note:
45680b98dbb4SBarry Smith     Use  `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45690b98dbb4SBarry Smith 
45701cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()`
45710b98dbb4SBarry Smith M*/
45720b98dbb4SBarry Smith 
45730b98dbb4SBarry Smith /*MC
45740b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45750b98dbb4SBarry Smith 
45760b98dbb4SBarry Smith     Synopsis:
45770b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45780b98dbb4SBarry Smith 
45790b98dbb4SBarry Smith     Not Collective
45800b98dbb4SBarry Smith 
45810b98dbb4SBarry Smith     Input Parameters:
45820b98dbb4SBarry Smith +   A - the `MATMPIAIJ` matrix
45830b98dbb4SBarry Smith .   Ad - the diagonal portion of the matrix
45844cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45852ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45860b98dbb4SBarry Smith -   ierr - error code
45870b98dbb4SBarry Smith 
45880b98dbb4SBarry Smith      Level: advanced
45890b98dbb4SBarry Smith 
45901cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()`
45910b98dbb4SBarry Smith M*/
45920b98dbb4SBarry Smith 
4593127ca0efSMatthew Knepley /*@C
45940ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4595127ca0efSMatthew Knepley 
45962ef1f0ffSBarry Smith   Not Collective
4597127ca0efSMatthew Knepley 
4598127ca0efSMatthew Knepley   Input Parameter:
459911a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4600127ca0efSMatthew Knepley 
4601127ca0efSMatthew Knepley   Output Parameters:
460211a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
460311a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
46042ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4605127ca0efSMatthew Knepley 
46060ab4885dSBarry Smith   Level: intermediate
46070ab4885dSBarry Smith 
460811a5261eSBarry Smith   Note:
46092ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
46102ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
46112ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4612127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4613127ca0efSMatthew Knepley 
4614fe59aa6dSJacob Faibussowitsch   Fortran Notes:
46150ab4885dSBarry Smith   `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()`
4616127ca0efSMatthew Knepley 
4617fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4618127ca0efSMatthew Knepley @*/
4619d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4620d71ae5a4SJacob Faibussowitsch {
4621195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
462204cf37c7SBarry Smith   PetscBool   flg;
4623b1d57f15SBarry Smith 
4624195d93cdSBarry Smith   PetscFunctionBegin;
46259566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
462628b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
462721e72a00SBarry Smith   if (Ad) *Ad = a->A;
462821e72a00SBarry Smith   if (Ao) *Ao = a->B;
462921e72a00SBarry Smith   if (colmap) *colmap = a->garray;
46303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4631195d93cdSBarry Smith }
4632a2243be0SBarry Smith 
4633d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4634d71ae5a4SJacob Faibussowitsch {
4635110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
46369b8102ccSHong Zhang   PetscInt    *indx;
4637110bb6e1SHong Zhang   PetscScalar *values;
4638421ddf4dSJunchao Zhang   MatType      rootType;
46399b8102ccSHong Zhang 
46409b8102ccSHong Zhang   PetscFunctionBegin;
46419566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4642110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4643110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4644110bb6e1SHong Zhang 
464548a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4646a22543b6SHong Zhang     /* Check sum(n) = N */
46471c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
464808401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4649a22543b6SHong Zhang 
46509566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46519b8102ccSHong Zhang     rstart -= m;
46529b8102ccSHong Zhang 
4653d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46549b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46559566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46569566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46579566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46589b8102ccSHong Zhang     }
46599b8102ccSHong Zhang 
46609566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46619566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46629566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46639566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46649566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46659566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46669566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46679566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4668d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46699566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46709b8102ccSHong Zhang   }
46719b8102ccSHong Zhang 
4672110bb6e1SHong Zhang   /* numeric phase */
46739566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46749b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46759566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46769b8102ccSHong Zhang     Ii = i + rstart;
46779566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46789566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46799b8102ccSHong Zhang   }
46809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4683c5d6d63eSBarry Smith }
4684c5d6d63eSBarry Smith 
4685d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data)
4686d71ae5a4SJacob Faibussowitsch {
46876718818eSStefano Zampini   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data;
468851a7d1a8SHong Zhang 
468951a7d1a8SHong Zhang   PetscFunctionBegin;
46903ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
46919566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
46929566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
46939566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
46949566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
46959566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
46969566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
46979566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
46989566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
46999566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
47009566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
47019566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
47029566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
47039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
47049566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
47053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
470651a7d1a8SHong Zhang }
470751a7d1a8SHong Zhang 
4708c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4709c6db04a5SJed Brown #include <petscbt.h>
47104ebed01fSBarry Smith 
4711d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4712d71ae5a4SJacob Faibussowitsch {
4713ce94432eSBarry Smith   MPI_Comm             comm;
471455d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4715b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
4716a2ea699eSBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj;
4717b1d57f15SBarry Smith   PetscInt             proc, m;
4718b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
4719b1d57f15SBarry Smith   PetscInt             k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4720b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
472155d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
472255d1abb9SHong Zhang   MPI_Status          *status;
4723fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4724dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
472555d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4726776b82aeSLisandro Dalcin   PetscContainer       container;
472755d1abb9SHong Zhang 
472855d1abb9SHong Zhang   PetscFunctionBegin;
47299566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
47309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
47313c2c1871SHong Zhang 
47329566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47339566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
473455d1abb9SHong Zhang 
47359566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
473628b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
47379566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
47389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4739fff043a9SJunchao Zhang   aa = a_a;
4740bf0cc555SLisandro Dalcin 
474155d1abb9SHong Zhang   bi     = merge->bi;
474255d1abb9SHong Zhang   bj     = merge->bj;
474355d1abb9SHong Zhang   buf_ri = merge->buf_ri;
474455d1abb9SHong Zhang   buf_rj = merge->buf_rj;
474555d1abb9SHong Zhang 
47469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47477a2fc3feSBarry Smith   owners = merge->rowmap->range;
474855d1abb9SHong Zhang   len_s  = merge->len_s;
474955d1abb9SHong Zhang 
475055d1abb9SHong Zhang   /* send and recv matrix values */
47519566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47529566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
475355d1abb9SHong Zhang 
47549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
475555d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
475655d1abb9SHong Zhang     if (!len_s[proc]) continue;
475755d1abb9SHong Zhang     i = owners[proc];
47589566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
475955d1abb9SHong Zhang     k++;
476055d1abb9SHong Zhang   }
476155d1abb9SHong Zhang 
47629566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47639566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47649566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
476555d1abb9SHong Zhang 
47669566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47679566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
476855d1abb9SHong Zhang 
476955d1abb9SHong Zhang   /* insert mat values of mpimat */
47709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
477255d1abb9SHong Zhang 
477355d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
477455d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4775f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
477655d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4777a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
477855d1abb9SHong Zhang   }
477955d1abb9SHong Zhang 
478055d1abb9SHong Zhang   /* set values of ba */
47817a2fc3feSBarry Smith   m = merge->rowmap->n;
478255d1abb9SHong Zhang   for (i = 0; i < m; i++) {
478355d1abb9SHong Zhang     arow = owners[rank] + i;
478455d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
478555d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47869566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
478755d1abb9SHong Zhang 
478855d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
478955d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
479055d1abb9SHong Zhang     aj     = a->j + ai[arow];
4791fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
479255d1abb9SHong Zhang     nextaj = 0;
479355d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
479455d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
479555d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
479655d1abb9SHong Zhang       }
479755d1abb9SHong Zhang     }
479855d1abb9SHong Zhang 
479955d1abb9SHong Zhang     /* add received vals into ba */
480055d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
480155d1abb9SHong Zhang       /* i-th row */
480255d1abb9SHong Zhang       if (i == *nextrow[k]) {
480355d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4804f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4805f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
480655d1abb9SHong Zhang         nextaj = 0;
480755d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
480855d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
480955d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
481055d1abb9SHong Zhang           }
481155d1abb9SHong Zhang         }
48129371c9d4SSatish Balay         nextrow[k]++;
48139371c9d4SSatish Balay         nextai[k]++;
481455d1abb9SHong Zhang       }
481555d1abb9SHong Zhang     }
48169566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
481755d1abb9SHong Zhang   }
48189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
48199566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
48209566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
482155d1abb9SHong Zhang 
48229566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
48239566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
48249566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
48259566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
48269566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
48273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
482855d1abb9SHong Zhang }
482938f152feSBarry Smith 
4830d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4831d71ae5a4SJacob Faibussowitsch {
483255a3bba9SHong Zhang   Mat                  B_mpi;
4833c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4834b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4835b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4836d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
4837a2f3521dSMark F. Adams   PetscInt             len, proc, *dnz, *onz, bs, cbs;
4838c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4839b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
484055d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
484158cb9c82SHong Zhang   MPI_Status          *status;
48420298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4843be0fcf8dSHong Zhang   PetscBT              lnkbt;
484451a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4845776b82aeSLisandro Dalcin   PetscContainer       container;
484602c68681SHong Zhang 
4847e5f2cdd8SHong Zhang   PetscFunctionBegin;
48489566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48493c2c1871SHong Zhang 
485038f152feSBarry Smith   /* make sure it is a PETSc comm */
48519566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48529566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48539566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
485455d1abb9SHong Zhang 
48559566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4857e5f2cdd8SHong Zhang 
48586abd8857SHong Zhang   /* determine row ownership */
48599566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48609566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48619566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48629566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48639566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48649566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
486655d1abb9SHong Zhang 
48677a2fc3feSBarry Smith   m      = merge->rowmap->n;
48687a2fc3feSBarry Smith   owners = merge->rowmap->range;
48696abd8857SHong Zhang 
48706abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48713e06a4e6SHong Zhang   len_s = merge->len_s;
487251a7d1a8SHong Zhang 
48732257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4874c2234fe3SHong Zhang   merge->nsend = 0;
4875409913e3SHong Zhang   for (proc = 0; proc < size; proc++) {
48762257cef7SHong Zhang     len_si[proc] = 0;
48773e06a4e6SHong Zhang     if (proc == rank) {
48786abd8857SHong Zhang       len_s[proc] = 0;
48793e06a4e6SHong Zhang     } else {
488002c68681SHong Zhang       len_si[proc] = owners[proc + 1] - owners[proc] + 1;
48813e06a4e6SHong Zhang       len_s[proc]  = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */
48823e06a4e6SHong Zhang     }
48833e06a4e6SHong Zhang     if (len_s[proc]) {
4884c2234fe3SHong Zhang       merge->nsend++;
48852257cef7SHong Zhang       nrows = 0;
48862257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48872257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48882257cef7SHong Zhang       }
48892257cef7SHong Zhang       len_si[proc] = 2 * (nrows + 1);
48902257cef7SHong Zhang       len += len_si[proc];
4891409913e3SHong Zhang     }
489258cb9c82SHong Zhang   }
4893409913e3SHong Zhang 
48942257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
48959566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
48969566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4897671beff6SHong Zhang 
48983e06a4e6SHong Zhang   /* post the Irecv of j-structure */
48999566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
49009566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
490102c68681SHong Zhang 
49023e06a4e6SHong Zhang   /* post the Isend of j-structure */
49039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
49043e06a4e6SHong Zhang 
49052257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
4906409913e3SHong Zhang     if (!len_s[proc]) continue;
490702c68681SHong Zhang     i = owners[proc];
49089566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
490951a7d1a8SHong Zhang     k++;
491051a7d1a8SHong Zhang   }
491151a7d1a8SHong Zhang 
49123e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
49139566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
49149566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
491502c68681SHong Zhang 
491602c68681SHong Zhang   /* send and recv i-structure */
49179566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
49189566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
491902c68681SHong Zhang 
49209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
49213e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
49222257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
492302c68681SHong Zhang     if (!len_s[proc]) continue;
49243e06a4e6SHong Zhang     /* form outgoing message for i-structure:
49253e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
49263e06a4e6SHong Zhang                [1:nrows]:           row index (global)
49273e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
49283e06a4e6SHong Zhang     */
49292257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
49303e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
49313e06a4e6SHong Zhang     buf_si[0]   = nrows;
49323e06a4e6SHong Zhang     buf_si_i[0] = 0;
49333e06a4e6SHong Zhang     nrows       = 0;
49343e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
49353e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
49363e06a4e6SHong Zhang       if (anzi) {
49373e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
49383e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
49393e06a4e6SHong Zhang         nrows++;
49403e06a4e6SHong Zhang       }
49413e06a4e6SHong Zhang     }
49429566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
494302c68681SHong Zhang     k++;
49442257cef7SHong Zhang     buf_si += len_si[proc];
494502c68681SHong Zhang   }
49462257cef7SHong Zhang 
49479566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49489566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
494902c68681SHong Zhang 
49509566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
495148a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49523e06a4e6SHong Zhang 
49539566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49549566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49559566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49569566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49579566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49589566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49599566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
496058cb9c82SHong Zhang 
4961bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
496258cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
496458cb9c82SHong Zhang   bi[0] = 0;
496558cb9c82SHong Zhang 
4966be0fcf8dSHong Zhang   /* create and initialize a linked list */
4967be0fcf8dSHong Zhang   nlnk = N + 1;
49689566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
496958cb9c82SHong Zhang 
4970bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4971bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49729566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49732205254eSKarl Rupp 
497458cb9c82SHong Zhang   current_space = free_space;
497558cb9c82SHong Zhang 
4976bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49781d79065fSBarry Smith 
49793e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49802257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49813e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49823e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4983a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49843e06a4e6SHong Zhang   }
49852257cef7SHong Zhang 
4986d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4987bcc1bcd5SHong Zhang   len = 0;
498858cb9c82SHong Zhang   for (i = 0; i < m; i++) {
498958cb9c82SHong Zhang     bnzi = 0;
499058cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
499158cb9c82SHong Zhang     arow = owners[rank] + i;
499258cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
499358cb9c82SHong Zhang     aj   = a->j + ai[arow];
49949566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
499558cb9c82SHong Zhang     bnzi += nlnk;
499658cb9c82SHong Zhang     /* add received col data into lnk */
499751a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
499855d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
49993e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
50003e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
50019566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
50023e06a4e6SHong Zhang         bnzi += nlnk;
50039371c9d4SSatish Balay         nextrow[k]++;
50049371c9d4SSatish Balay         nextai[k]++;
50053e06a4e6SHong Zhang       }
500658cb9c82SHong Zhang     }
5007bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
500858cb9c82SHong Zhang 
500958cb9c82SHong Zhang     /* if free space is not available, make more free space */
501048a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
501158cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
50129566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
50139566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
5014bcc1bcd5SHong Zhang 
501558cb9c82SHong Zhang     current_space->array += bnzi;
501658cb9c82SHong Zhang     current_space->local_used += bnzi;
501758cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
501858cb9c82SHong Zhang 
501958cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
502058cb9c82SHong Zhang   }
5021bcc1bcd5SHong Zhang 
50229566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
5023bcc1bcd5SHong Zhang 
50249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
50259566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
50269566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
5027409913e3SHong Zhang 
5028bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
50299566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
50309566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
503154b84b50SHong Zhang   if (n == PETSC_DECIDE) {
50329566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
503354b84b50SHong Zhang   } else {
50349566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
503554b84b50SHong Zhang   }
50369566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
50379566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
50389566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
5039d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
50409566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
504158cb9c82SHong Zhang 
504290431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
50436abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5044affca5deSHong Zhang   merge->bi        = bi;
5045affca5deSHong Zhang   merge->bj        = bj;
504602c68681SHong Zhang   merge->buf_ri    = buf_ri;
504702c68681SHong Zhang   merge->buf_rj    = buf_rj;
50480298fd71SBarry Smith   merge->coi       = NULL;
50490298fd71SBarry Smith   merge->coj       = NULL;
50500298fd71SBarry Smith   merge->owners_co = NULL;
5051affca5deSHong Zhang 
50529566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5053bf0cc555SLisandro Dalcin 
5054affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50559566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50569566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
50579566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50589566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50599566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5060affca5deSHong Zhang   *mpimat = B_mpi;
506138f152feSBarry Smith 
50629566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5064e5f2cdd8SHong Zhang }
506525616d81SHong Zhang 
5066d4036a1aSHong Zhang /*@C
506711a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5068d4036a1aSHong Zhang   matrices from each processor
5069d4036a1aSHong Zhang 
5070d083f849SBarry Smith   Collective
5071d4036a1aSHong Zhang 
5072d4036a1aSHong Zhang   Input Parameters:
5073d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5074d4036a1aSHong Zhang . seqmat - the input sequential matrices
507511a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
507611a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
507711a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5078d4036a1aSHong Zhang 
5079d4036a1aSHong Zhang   Output Parameter:
5080d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5081d4036a1aSHong Zhang 
5082d4036a1aSHong Zhang   Level: advanced
5083d4036a1aSHong Zhang 
508411a5261eSBarry Smith   Note:
5085d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5086d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
508711a5261eSBarry Smith   destroyed when mpimat is destroyed. Call `PetscObjectQuery()` to access seqmat.
50882ef1f0ffSBarry Smith 
50891cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5090d4036a1aSHong Zhang @*/
5091d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5092d71ae5a4SJacob Faibussowitsch {
50937e63b356SHong Zhang   PetscMPIInt size;
509455d1abb9SHong Zhang 
509555d1abb9SHong Zhang   PetscFunctionBegin;
50969566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
50977e63b356SHong Zhang   if (size == 1) {
50989566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
50997e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
51009566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
51017e63b356SHong Zhang     } else {
51029566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
51037e63b356SHong Zhang     }
51049566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51053ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
51067e63b356SHong Zhang   }
51079566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
510848a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
51099566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
51109566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
511255d1abb9SHong Zhang }
51134ebed01fSBarry Smith 
5114bc08b0f1SBarry Smith /*@
51152920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
51168a9c020eSBarry Smith 
51178a9c020eSBarry Smith   Not Collective
51188a9c020eSBarry Smith 
51192fe279fdSBarry Smith   Input Parameter:
512020f4b53cSBarry Smith . A - the matrix
51218a9c020eSBarry Smith 
51228a9c020eSBarry Smith   Output Parameter:
51238a9c020eSBarry Smith . A_loc - the local sequential matrix generated
51248a9c020eSBarry Smith 
51258a9c020eSBarry Smith   Level: developer
51268a9c020eSBarry Smith 
51278a9c020eSBarry Smith   Notes:
51282920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
51292920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
51302920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
51312920cce0SJacob Faibussowitsch 
513211a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51338a9c020eSBarry Smith 
51342920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
51352920cce0SJacob Faibussowitsch 
513611a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
51378a9c020eSBarry Smith 
51381cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
51398a9c020eSBarry Smith @*/
5140d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5141d71ae5a4SJacob Faibussowitsch {
51428a9c020eSBarry Smith   PetscBool mpi;
51438a9c020eSBarry Smith 
51448a9c020eSBarry Smith   PetscFunctionBegin;
51458a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51468a9c020eSBarry Smith   if (mpi) {
51478a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51488a9c020eSBarry Smith   } else {
51498a9c020eSBarry Smith     *A_loc = A;
51508a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51518a9c020eSBarry Smith   }
51523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51538a9c020eSBarry Smith }
51548a9c020eSBarry Smith 
51558a9c020eSBarry Smith /*@
51562920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
515725616d81SHong Zhang 
515832fba14fSHong Zhang   Not Collective
515925616d81SHong Zhang 
516025616d81SHong Zhang   Input Parameters:
516125616d81SHong Zhang + A     - the matrix
516211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
516325616d81SHong Zhang 
516425616d81SHong Zhang   Output Parameter:
516525616d81SHong Zhang . A_loc - the local sequential matrix generated
516625616d81SHong Zhang 
516725616d81SHong Zhang   Level: developer
516825616d81SHong Zhang 
516977c65a98SStefano Zampini   Notes:
51702920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51712920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51722920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51732920cce0SJacob Faibussowitsch 
517411a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51758a9c020eSBarry Smith 
51762920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51772920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51782920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51792920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
518077c65a98SStefano Zampini 
51811cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
518225616d81SHong Zhang @*/
5183d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5184d71ae5a4SJacob Faibussowitsch {
518501b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5186b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5187b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5188ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5189ce496241SStefano Zampini   PetscScalar       *ca, *cam;
519077c65a98SStefano Zampini   PetscMPIInt        size;
5191d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
51925a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
51938661ff28SBarry Smith   PetscBool          match;
519425616d81SHong Zhang 
519525616d81SHong Zhang   PetscFunctionBegin;
51969566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
519728b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
51989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
519977c65a98SStefano Zampini   if (size == 1) {
520077c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52019566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
520277c65a98SStefano Zampini       *A_loc = mpimat->A;
520377c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52049566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
520577c65a98SStefano Zampini     }
52063ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
520777c65a98SStefano Zampini   }
520870a9ba44SHong Zhang 
52099566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5210f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5211f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
52129371c9d4SSatish Balay   ai = a->i;
52139371c9d4SSatish Balay   aj = a->j;
52149371c9d4SSatish Balay   bi = b->i;
52159371c9d4SSatish Balay   bj = b->j;
52169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
52179566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5218ce496241SStefano Zampini   aa = aav;
5219ce496241SStefano Zampini   ba = bav;
522001b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
52219566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5222dea91ad1SHong Zhang     ci[0] = 0;
5223ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
52249566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
52259566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5226dea91ad1SHong Zhang     k = 0;
522701b7ae99SHong Zhang     for (i = 0; i < am; i++) {
52285a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52295a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
523001b7ae99SHong Zhang       /* off-diagonal portion of A */
52315a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52325a7d977cSHong Zhang         col = cmap[*bj];
52335a7d977cSHong Zhang         if (col >= cstart) break;
52349371c9d4SSatish Balay         cj[k] = col;
52359371c9d4SSatish Balay         bj++;
52365a7d977cSHong Zhang         ca[k++] = *ba++;
52375a7d977cSHong Zhang       }
52385a7d977cSHong Zhang       /* diagonal portion of A */
52395a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
52405a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
52415a7d977cSHong Zhang         ca[k++] = *aa++;
52425a7d977cSHong Zhang       }
52435a7d977cSHong Zhang       /* off-diagonal portion of A */
52445a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52455a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52465a7d977cSHong Zhang         ca[k++] = *ba++;
52475a7d977cSHong Zhang       }
524825616d81SHong Zhang     }
5249dea91ad1SHong Zhang     /* put together the new matrix */
52509566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5251dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5252dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5253dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5254e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5255e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5256dea91ad1SHong Zhang     mat->nonew   = 0;
52575a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52585a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5259fff043a9SJunchao Zhang     ci  = mat->i;
5260fff043a9SJunchao Zhang     cj  = mat->j;
52619566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52625a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52635a7d977cSHong Zhang       /* off-diagonal portion of A */
52645a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52655a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52665a7d977cSHong Zhang         col = cmap[*bj];
52675a7d977cSHong Zhang         if (col >= cstart) break;
52689371c9d4SSatish Balay         *cam++ = *ba++;
52699371c9d4SSatish Balay         bj++;
52705a7d977cSHong Zhang       }
52715a7d977cSHong Zhang       /* diagonal portion of A */
5272ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5273a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52745a7d977cSHong Zhang       /* off-diagonal portion of A */
5275f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52769371c9d4SSatish Balay         *cam++ = *ba++;
52779371c9d4SSatish Balay         bj++;
5278f33d1a9aSHong Zhang       }
52795a7d977cSHong Zhang     }
52809566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
528198921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52829566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52839566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52849566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
528625616d81SHong Zhang }
528725616d81SHong Zhang 
5288ed502f03SStefano Zampini /*@
528911a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52904cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5291ed502f03SStefano Zampini 
5292ed502f03SStefano Zampini   Not Collective
5293ed502f03SStefano Zampini 
5294ed502f03SStefano Zampini   Input Parameters:
5295ed502f03SStefano Zampini + A     - the matrix
529611a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5297ed502f03SStefano Zampini 
5298d8d19677SJose E. Roman   Output Parameters:
52992ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5300ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5301ed502f03SStefano Zampini 
5302ed502f03SStefano Zampini   Level: developer
5303ed502f03SStefano Zampini 
530411a5261eSBarry Smith   Note:
53052ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
53064cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5307ed502f03SStefano Zampini 
53081cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5309ed502f03SStefano Zampini @*/
5310d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5311d71ae5a4SJacob Faibussowitsch {
5312ed502f03SStefano Zampini   Mat             Ao, Ad;
5313ed502f03SStefano Zampini   const PetscInt *cmap;
5314ed502f03SStefano Zampini   PetscMPIInt     size;
5315ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5316ed502f03SStefano Zampini 
5317ed502f03SStefano Zampini   PetscFunctionBegin;
53189566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
53199566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5320ed502f03SStefano Zampini   if (size == 1) {
5321ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
53229566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5323ed502f03SStefano Zampini       *A_loc = Ad;
5324ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53259566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5326ed502f03SStefano Zampini     }
53279566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
53283ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5329ed502f03SStefano Zampini   }
53309566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
53319566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5332ed502f03SStefano Zampini   if (f) {
53339566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5334ed502f03SStefano Zampini   } else {
5335ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5336ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5337ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5338ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5339ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5340ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5341ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5342ed502f03SStefano Zampini     PetscScalar       *ca;
5343ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5344ed502f03SStefano Zampini 
53459566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53469566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53479566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53489566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5349ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5350ed502f03SStefano Zampini       PetscInt k;
53519566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53529566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53539566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5354ed502f03SStefano Zampini       ci[0] = 0;
5355ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5356ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5357ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5358ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5359ed502f03SStefano Zampini         /* diagonal portion of A */
5360ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5361ed502f03SStefano Zampini           cj[k] = *aj++;
5362ed502f03SStefano Zampini           ca[k] = *aa++;
5363ed502f03SStefano Zampini         }
5364ed502f03SStefano Zampini         /* off-diagonal portion of A */
5365ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5366ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5367ed502f03SStefano Zampini           ca[k] = *ba++;
5368ed502f03SStefano Zampini         }
5369ed502f03SStefano Zampini       }
5370ed502f03SStefano Zampini       /* put together the new matrix */
53719566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5372ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5373ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5374ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5375ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5376ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5377ed502f03SStefano Zampini       c->nonew   = 0;
53789566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5379ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53809566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5381ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5382ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5383ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5384ed502f03SStefano Zampini         /* diagonal portion of A */
5385ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5386ed502f03SStefano Zampini         /* off-diagonal portion of A */
5387ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5388ed502f03SStefano Zampini       }
53899566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
539098921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53919566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
53929566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5393ed502f03SStefano Zampini     if (glob) {
5394ed502f03SStefano Zampini       PetscInt cst, *gidx;
5395ed502f03SStefano Zampini 
53969566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
53979566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5398ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5399ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
54009566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5401ed502f03SStefano Zampini     }
5402ed502f03SStefano Zampini   }
54039566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
54043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5405ed502f03SStefano Zampini }
5406ed502f03SStefano Zampini 
540732fba14fSHong Zhang /*@C
540811a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
540932fba14fSHong Zhang 
541032fba14fSHong Zhang   Not Collective
541132fba14fSHong Zhang 
541232fba14fSHong Zhang   Input Parameters:
541332fba14fSHong Zhang + A     - the matrix
541411a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
541520f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
541620f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
541732fba14fSHong Zhang 
541832fba14fSHong Zhang   Output Parameter:
541932fba14fSHong Zhang . A_loc - the local sequential matrix generated
542032fba14fSHong Zhang 
542132fba14fSHong Zhang   Level: developer
542232fba14fSHong Zhang 
54231cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
542432fba14fSHong Zhang @*/
5425d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5426d71ae5a4SJacob Faibussowitsch {
542732fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
542832fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
542932fba14fSHong Zhang   IS          isrowa, iscola;
543032fba14fSHong Zhang   Mat        *aloc;
54314a2b5492SBarry Smith   PetscBool   match;
543232fba14fSHong Zhang 
543332fba14fSHong Zhang   PetscFunctionBegin;
54349566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
543528b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
54369566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
543732fba14fSHong Zhang   if (!row) {
54389371c9d4SSatish Balay     start = A->rmap->rstart;
54399371c9d4SSatish Balay     end   = A->rmap->rend;
54409566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
544132fba14fSHong Zhang   } else {
544232fba14fSHong Zhang     isrowa = *row;
544332fba14fSHong Zhang   }
544432fba14fSHong Zhang   if (!col) {
5445d0f46423SBarry Smith     start = A->cmap->rstart;
544632fba14fSHong Zhang     cmap  = a->garray;
5447d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5448d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54499566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
545032fba14fSHong Zhang     ncols = 0;
545132fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
545232fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
545332fba14fSHong Zhang       else break;
545432fba14fSHong Zhang     }
545532fba14fSHong Zhang     imark = i;
545632fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
545732fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54589566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
545932fba14fSHong Zhang   } else {
546032fba14fSHong Zhang     iscola = *col;
546132fba14fSHong Zhang   }
546232fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54639566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
546432fba14fSHong Zhang     aloc[0] = *A_loc;
546532fba14fSHong Zhang   }
54669566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5467109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54689566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5469109e0772SStefano Zampini   }
547032fba14fSHong Zhang   *A_loc = aloc[0];
54719566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
547248a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
547348a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54749566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
547632fba14fSHong Zhang }
547732fba14fSHong Zhang 
54785c65b9ecSFande Kong /*
54795c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54805c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54815c65b9ecSFande Kong  * on a global size.
54825c65b9ecSFande Kong  * */
5483ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5484d71ae5a4SJacob Faibussowitsch {
54855c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5486f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5487131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5488131c27b5Sprj-   PetscMPIInt            owner;
54895c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54905c65b9ecSFande Kong   const PetscInt        *lrowindices;
54915c65b9ecSFande Kong   PetscSF                sf, osf;
54925c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
54935c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
54945c65b9ecSFande Kong   MPI_Comm               comm;
54955c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5496fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
54975c65b9ecSFande Kong 
54985c65b9ecSFande Kong   PetscFunctionBegin;
54999566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
55005c65b9ecSFande Kong   /* plocalsize is the number of roots
55015c65b9ecSFande Kong    * nrows is the number of leaves
55025c65b9ecSFande Kong    * */
55039566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
55049566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
55059566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
55069566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
55075c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55085c65b9ecSFande Kong     /* Find a remote index and an owner for a row
55095c65b9ecSFande Kong      * The row could be local or remote
55105c65b9ecSFande Kong      * */
551134bcad68SFande Kong     owner = 0;
551234bcad68SFande Kong     lidx  = 0;
55139566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
55145c65b9ecSFande Kong     iremote[i].index = lidx;
55155c65b9ecSFande Kong     iremote[i].rank  = owner;
55165c65b9ecSFande Kong   }
55175c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
55189566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5519f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
55205c65b9ecSFande Kong    * offsets
55215c65b9ecSFande Kong    * */
55229566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55239566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55249566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5525bc8e477aSFande Kong 
55269566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
55279566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
55289566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
55295c65b9ecSFande Kong   roffsets[0] = 0;
55305c65b9ecSFande Kong   roffsets[1] = 0;
55315c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
55324cf0e950SBarry Smith     /* diagonal */
55335c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
55344cf0e950SBarry Smith     /* off-diagonal */
55355c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
55365c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
55375c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
55385c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
55395c65b9ecSFande Kong   }
55409566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
55419566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
55425c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
55439566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55449566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55459566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55469566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55479566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55489566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55499566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55505c65b9ecSFande Kong   dntotalcols = 0;
55515c65b9ecSFande Kong   ontotalcols = 0;
5552bc8e477aSFande Kong   ncol        = 0;
55535c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55545c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5555bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55564cf0e950SBarry Smith     /* diagonal */
55575c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55584cf0e950SBarry Smith     /* off-diagonal */
55595c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55605c65b9ecSFande Kong   }
55615c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55625c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55635c65b9ecSFande Kong    * */
55649566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55659566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55669566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55675c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55684cf0e950SBarry Smith   /* diagonal */
55699566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55704cf0e950SBarry Smith   /* off-diagonal */
55719566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55724cf0e950SBarry Smith   /* diagonal */
55739566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55744cf0e950SBarry Smith   /* off-diagonal */
55759566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55765c65b9ecSFande Kong   dntotalcols = 0;
55775c65b9ecSFande Kong   ontotalcols = 0;
55785c65b9ecSFande Kong   ntotalcols  = 0;
55795c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
558034bcad68SFande Kong     owner = 0;
55819566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55825c65b9ecSFande Kong     /* Set iremote for diag matrix */
55835c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55845c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55855c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55865c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55875c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55885c65b9ecSFande Kong     }
55894cf0e950SBarry Smith     /* off-diagonal */
55905c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
55915c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
55925c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
55935c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
55945c65b9ecSFande Kong     }
55955c65b9ecSFande Kong   }
55969566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
55979566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
55989566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
55999566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
56005c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
56015c65b9ecSFande Kong    * Diag matrix
56025c65b9ecSFande Kong    * */
56039566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
56049566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
56059566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
56065c65b9ecSFande Kong 
56079566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
56084cf0e950SBarry Smith   /* off-diagonal */
56099566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
56109566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
56119566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
56129566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56144cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
56159566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56169566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56179566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
56185c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
56195c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
56209566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56215c65b9ecSFande Kong   /* We want P_oth store global indices */
56229566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
56235c65b9ecSFande Kong   /* Use memory scalable approach */
56249566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
56259566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
56269566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56279566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56285c65b9ecSFande Kong   /* Convert back to local indices */
56295c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
56309566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56315c65b9ecSFande Kong   nout = 0;
56329566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
563308401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
56349566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
56355c65b9ecSFande Kong   /* Exchange values */
56369566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56379566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56405c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
56415c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
56429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
56439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56445c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56459566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56469566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56479566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56489566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56505c65b9ecSFande Kong }
56515c65b9ecSFande Kong 
56525c65b9ecSFande Kong /*
56535c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56545c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56555c65b9ecSFande Kong  * */
5656d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5657d71ae5a4SJacob Faibussowitsch {
56585c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5659bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5660bc8e477aSFande Kong   IS          rows, map;
5661bc8e477aSFande Kong   PetscHMapI  hamp;
5662bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56635c65b9ecSFande Kong   MPI_Comm    comm;
56645c65b9ecSFande Kong   PetscSF     sf, osf;
5665bc8e477aSFande Kong   PetscBool   has;
56665c65b9ecSFande Kong 
56675c65b9ecSFande Kong   PetscFunctionBegin;
56689566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56699566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56705c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56715c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56725c65b9ecSFande Kong    * */
56735c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56745c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5675eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56769566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5677bc8e477aSFande Kong     count = 0;
5678bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5679bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5680bc8e477aSFande Kong       key = a->garray[i] / dof;
56819566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5682bc8e477aSFande Kong       if (!has) {
5683bc8e477aSFande Kong         mapping[i] = count;
56849566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5685bc8e477aSFande Kong       } else {
5686bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5687bc8e477aSFande Kong         mapping[i] = count - 1;
56885c65b9ecSFande Kong       }
5689bc8e477aSFande Kong     }
56909566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
56919566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5692eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
56939566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
56945c65b9ecSFande Kong     off = 0;
56959566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
56969566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
56979566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
56989566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
56995c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
57009566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
57019566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
57029566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
57039566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
57049566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
57055c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
57065c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
570735cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5708fff043a9SJunchao Zhang      */
5709fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5710fff043a9SJunchao Zhang 
57119566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
57129566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
571308401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
57145c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
57155c65b9ecSFande Kong     /* Update values in place */
57169566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
57179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
57189566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57199566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57209566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57219566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57229566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
57239566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
57246718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
57259566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
57263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57275c65b9ecSFande Kong }
57285c65b9ecSFande Kong 
572925616d81SHong Zhang /*@C
573020f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
573125616d81SHong Zhang 
5732c3339decSBarry Smith   Collective
573325616d81SHong Zhang 
573425616d81SHong Zhang   Input Parameters:
573511a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
573611a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
573711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
573825616d81SHong Zhang 
5739f1a722f8SMatthew G. Knepley   Output Parameters:
574027430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
574127430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5742f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
574325616d81SHong Zhang 
574425616d81SHong Zhang   Level: developer
574525616d81SHong Zhang 
574620f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
574725616d81SHong Zhang @*/
5748d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5749d71ae5a4SJacob Faibussowitsch {
5750899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5751b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
575225616d81SHong Zhang   IS          isrowb, iscolb;
57530298fd71SBarry Smith   Mat        *bseq = NULL;
575425616d81SHong Zhang 
575525616d81SHong Zhang   PetscFunctionBegin;
575620f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
575720f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57589566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
575925616d81SHong Zhang 
576025616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5761d0f46423SBarry Smith     start = A->cmap->rstart;
576225616d81SHong Zhang     cmap  = a->garray;
5763d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5764d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57659566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
576625616d81SHong Zhang     ncols = 0;
57670390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
576825616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
576925616d81SHong Zhang       else break;
577025616d81SHong Zhang     }
577125616d81SHong Zhang     imark = i;
57720390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57730390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57749566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57759566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
577625616d81SHong Zhang   } else {
577708401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57789371c9d4SSatish Balay     isrowb = *rowb;
57799371c9d4SSatish Balay     iscolb = *colb;
57809566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
578125616d81SHong Zhang     bseq[0] = *B_seq;
578225616d81SHong Zhang   }
57839566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
578425616d81SHong Zhang   *B_seq = bseq[0];
57859566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
578625616d81SHong Zhang   if (!rowb) {
57879566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
578825616d81SHong Zhang   } else {
578925616d81SHong Zhang     *rowb = isrowb;
579025616d81SHong Zhang   }
579125616d81SHong Zhang   if (!colb) {
57929566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
579325616d81SHong Zhang   } else {
579425616d81SHong Zhang     *colb = iscolb;
579525616d81SHong Zhang   }
57969566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
57973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
579825616d81SHong Zhang }
5799429d309bSHong Zhang 
5800f8487c73SHong Zhang /*
580127430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
580201b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5803429d309bSHong Zhang 
5804c3339decSBarry Smith     Collective
5805429d309bSHong Zhang 
5806429d309bSHong Zhang    Input Parameters:
580727430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
580827430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5809429d309bSHong Zhang 
5810429d309bSHong Zhang    Output Parameter:
58110298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
58120298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
58130298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5814598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5815429d309bSHong Zhang 
581611a5261eSBarry Smith     Developer Note:
581711a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
58186eb45d04SBarry Smith      for this matrix. This is not desirable..
58196eb45d04SBarry Smith 
5820429d309bSHong Zhang     Level: developer
5821429d309bSHong Zhang 
5822f8487c73SHong Zhang */
5823d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5824d71ae5a4SJacob Faibussowitsch {
5825899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
582687025532SHong Zhang   Mat_SeqAIJ        *b_oth;
58274b8d542aSHong Zhang   VecScatter         ctx;
5828ce94432eSBarry Smith   MPI_Comm           comm;
58293515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
58303515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5831277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
5832f4259b30SLisandro Dalcin   PetscInt           i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len;
5833277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5834ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5835ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5836429d309bSHong Zhang 
5837429d309bSHong Zhang   PetscFunctionBegin;
58389566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
58399566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5840a7c7454dSHong Zhang 
584120f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
584220f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58439566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58449566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5845a6b2eed2SHong Zhang 
5846ec07b8f8SHong Zhang   if (size == 1) {
5847ec07b8f8SHong Zhang     startsj_s = NULL;
5848ec07b8f8SHong Zhang     bufa_ptr  = NULL;
584952f7967eSHong Zhang     *B_oth    = NULL;
58503ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5851ec07b8f8SHong Zhang   }
5852ec07b8f8SHong Zhang 
5853fa83eaafSHong Zhang   ctx = a->Mvctx;
58544b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58554b8d542aSHong Zhang 
58569566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58573515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58589566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58599566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58609566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5861ddea5d60SJunchao Zhang   rwaits = reqs;
58628e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5863429d309bSHong Zhang 
5864b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5865429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5866a6b2eed2SHong Zhang     /* i-array */
5867a6b2eed2SHong Zhang     /*  post receives */
58689566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5869a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
587074268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5871e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58729566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5873429d309bSHong Zhang     }
5874a6b2eed2SHong Zhang 
5875a6b2eed2SHong Zhang     /* pack the outgoing message */
58769566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58772205254eSKarl Rupp 
58782205254eSKarl Rupp     sstartsj[0] = 0;
58792205254eSKarl Rupp     rstartsj[0] = 0;
5880a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58813515ee7fSJunchao Zhang     if (nsends) {
58823515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58839566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58843515ee7fSJunchao Zhang     }
5885a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58863515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5887e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
588887025532SHong Zhang       for (j = 0; j < nrows; j++) {
5889d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5890e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
58919566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
58922205254eSKarl Rupp 
5893e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
58942205254eSKarl Rupp 
5895e42f35eeSHong Zhang           len += ncols;
58969566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5897e42f35eeSHong Zhang         }
5898a6b2eed2SHong Zhang         k++;
5899429d309bSHong Zhang       }
59009566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
59012205254eSKarl Rupp 
5902dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5903429d309bSHong Zhang     }
590487025532SHong Zhang     /* recvs and sends of i-array are completed */
59059566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59069566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5907e42f35eeSHong Zhang 
5908a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
59099566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
59109566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5911a6b2eed2SHong Zhang 
591287025532SHong Zhang     /* create i-array of B_oth */
59139566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
59142205254eSKarl Rupp 
591587025532SHong Zhang     b_othi[0] = 0;
5916a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5917a6b2eed2SHong Zhang     k         = 0;
5918a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
59193515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
59203515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
592187025532SHong Zhang       for (j = 0; j < nrows; j++) {
592287025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
59239566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5924f91af8c7SBarry Smith         k++;
5925a6b2eed2SHong Zhang       }
5926dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5927a6b2eed2SHong Zhang     }
59289566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5929a6b2eed2SHong Zhang 
59306aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
59319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
59329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5933a6b2eed2SHong Zhang 
593487025532SHong Zhang     /* j-array */
5935a6b2eed2SHong Zhang     /*  post receives of j-array */
5936a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
593787025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59389566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5939a6b2eed2SHong Zhang     }
5940e42f35eeSHong Zhang 
5941e42f35eeSHong Zhang     /* pack the outgoing message j-array */
59423515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5943a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5944e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5945a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
594687025532SHong Zhang       for (j = 0; j < nrows; j++) {
5947d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5948e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59499566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5950ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59519566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5952e42f35eeSHong Zhang         }
595387025532SHong Zhang       }
59549566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
595587025532SHong Zhang     }
595687025532SHong Zhang 
595787025532SHong Zhang     /* recvs and sends of j-array are completed */
59589566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
595987025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5960b7f45c76SHong Zhang     sstartsj = *startsj_s;
59611d79065fSBarry Smith     rstartsj = *startsj_r;
596287025532SHong Zhang     bufa     = *bufa_ptr;
596387025532SHong Zhang     b_oth    = (Mat_SeqAIJ *)(*B_oth)->data;
59649566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5965ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
596687025532SHong Zhang 
596787025532SHong Zhang   /* a-array */
596887025532SHong Zhang   /*  post receives of a-array */
596987025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
597087025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59719566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
597287025532SHong Zhang   }
5973e42f35eeSHong Zhang 
5974e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59753515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
597687025532SHong Zhang   for (i = 0; i < nsends; i++) {
5977e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
597887025532SHong Zhang     bufA  = bufa + sstartsj[i];
597987025532SHong Zhang     for (j = 0; j < nrows; j++) {
5980d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5981e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59829566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5983ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59849566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5985e42f35eeSHong Zhang       }
5986a6b2eed2SHong Zhang     }
59879566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5988a6b2eed2SHong Zhang   }
598987025532SHong Zhang   /* recvs and sends of a-array are completed */
59909566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59919566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
5992a6b2eed2SHong Zhang 
599387025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5994a6b2eed2SHong Zhang     /* put together the new matrix */
59959566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
5996a6b2eed2SHong Zhang 
5997a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5998a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
599987025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
6000e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
6001e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
600287025532SHong Zhang     b_oth->nonew   = 0;
6003a6b2eed2SHong Zhang 
60049566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
6005b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
60069566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
60079566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
6008dea91ad1SHong Zhang     } else {
6009b7f45c76SHong Zhang       *startsj_s = sstartsj;
60101d79065fSBarry Smith       *startsj_r = rstartsj;
601187025532SHong Zhang       *bufa_ptr  = bufa;
601287025532SHong Zhang     }
6013fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
60149566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
6015dea91ad1SHong Zhang   }
60163515ee7fSJunchao Zhang 
60179566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
60189566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
60199566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
60203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6021429d309bSHong Zhang }
6022ccd8e176SBarry Smith 
6023cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
6024cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
6025ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
60269779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
6027a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
6028191b95cbSRichard Tran Mills #endif
6029ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
6030cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
60315d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6032cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
60335d7652ecSHong Zhang #endif
6034d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
6035d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
6036d24d4204SJose E. Roman #endif
603763c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
603863c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
603963c07aadSStefano Zampini #endif
60403338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
60413338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60423338378cSStefano Zampini #endif
6043d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6044d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6045d5e393b6SSuyash Tandon #endif
60463d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60473d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60483d0639e7SStefano Zampini #endif
6049d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60504222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60514222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
605217667f90SBarry Smith 
6053fc4dec0aSBarry Smith /*
6054fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6055fc4dec0aSBarry Smith 
6056fc4dec0aSBarry Smith                n                       p                          p
60572da392ccSBarry Smith         [             ]       [             ]         [                 ]
60582da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60592da392ccSBarry Smith         [             ]       [             ]         [                 ]
6060fc4dec0aSBarry Smith 
6061fc4dec0aSBarry Smith */
6062d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6063d71ae5a4SJacob Faibussowitsch {
6064fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6065fc4dec0aSBarry Smith 
6066fc4dec0aSBarry Smith   PetscFunctionBegin;
60679566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60689566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
60699566063dSJacob Faibussowitsch   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct));
60709566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60719566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60727fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60739566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60749566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6076fc4dec0aSBarry Smith }
6077fc4dec0aSBarry Smith 
6078d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6079d71ae5a4SJacob Faibussowitsch {
60806718818eSStefano Zampini   PetscBool cisdense;
6081fc4dec0aSBarry Smith 
6082fc4dec0aSBarry Smith   PetscFunctionBegin;
608308401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60849566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60859566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6086d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
608748a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60889566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6089f75ecaa4SHong Zhang 
60904222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
60913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6092fc4dec0aSBarry Smith }
6093fc4dec0aSBarry Smith 
6094d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6095d71ae5a4SJacob Faibussowitsch {
60964222ddf1SHong Zhang   Mat_Product *product = C->product;
60974222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6098fc4dec0aSBarry Smith 
6099fc4dec0aSBarry Smith   PetscFunctionBegin;
610020f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
610120f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
61024222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
61034222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
61043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6105fc4dec0aSBarry Smith }
6106fc4dec0aSBarry Smith 
6107d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6108d71ae5a4SJacob Faibussowitsch {
61094222ddf1SHong Zhang   Mat_Product *product = C->product;
61104222ddf1SHong Zhang 
61114222ddf1SHong Zhang   PetscFunctionBegin;
611248a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
61133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61144222ddf1SHong Zhang }
6115394ed5ebSJunchao Zhang 
611627430b45SBarry Smith /*
611727430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6118394ed5ebSJunchao Zhang 
6119394ed5ebSJunchao Zhang   Input Parameters:
6120394ed5ebSJunchao Zhang 
6121651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6122651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6123394ed5ebSJunchao Zhang 
6124158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6125394ed5ebSJunchao Zhang 
6126394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6127394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6128394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6129394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6130394ed5ebSJunchao Zhang 
6131394ed5ebSJunchao Zhang     Similar for Set2.
6132394ed5ebSJunchao Zhang 
6133394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6134394ed5ebSJunchao Zhang 
6135158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6136394ed5ebSJunchao Zhang 
6137394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6138394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6139394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6140394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6141394ed5ebSJunchao Zhang */
6142d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6143d71ae5a4SJacob Faibussowitsch {
6144394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6145394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6146394ed5ebSJunchao Zhang 
6147394ed5ebSJunchao Zhang   PetscFunctionBegin;
61489566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6149394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6150394ed5ebSJunchao Zhang   i[0]        = 0;
6151394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6152394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6153394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6154394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6155394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6156394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6157394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6158394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6159394ed5ebSJunchao Zhang         imap1[t1] = t;
6160394ed5ebSJunchao Zhang         imap2[t2] = t;
6161394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6162394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61639371c9d4SSatish Balay         t1++;
61649371c9d4SSatish Balay         t2++;
61659371c9d4SSatish Balay         t++;
6166394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6167394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6168394ed5ebSJunchao Zhang         imap1[t1] = t;
6169394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61709371c9d4SSatish Balay         t1++;
61719371c9d4SSatish Balay         t++;
6172394ed5ebSJunchao Zhang       } else {
6173394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6174394ed5ebSJunchao Zhang         imap2[t2] = t;
6175394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61769371c9d4SSatish Balay         t2++;
61779371c9d4SSatish Balay         t++;
6178394ed5ebSJunchao Zhang       }
6179394ed5ebSJunchao Zhang     }
6180394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6181394ed5ebSJunchao Zhang     while (b1 < e1) {
6182394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6183394ed5ebSJunchao Zhang       imap1[t1] = t;
6184394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61859371c9d4SSatish Balay       t1++;
61869371c9d4SSatish Balay       t++;
6187394ed5ebSJunchao Zhang     }
6188394ed5ebSJunchao Zhang     while (b2 < e2) {
6189394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6190394ed5ebSJunchao Zhang       imap2[t2] = t;
6191394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
61929371c9d4SSatish Balay       t2++;
61939371c9d4SSatish Balay       t++;
6194394ed5ebSJunchao Zhang     }
6195394ed5ebSJunchao Zhang     i[r + 1] = t;
6196394ed5ebSJunchao Zhang   }
61973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6198394ed5ebSJunchao Zhang }
6199394ed5ebSJunchao Zhang 
620027430b45SBarry Smith /*
620127430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6202394ed5ebSJunchao Zhang 
6203394ed5ebSJunchao Zhang   Input Parameters:
6204394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6205394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6206394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6207394ed5ebSJunchao Zhang 
6208394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6209394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6210394ed5ebSJunchao Zhang 
6211394ed5ebSJunchao Zhang   Output Parameters:
6212394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6213394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6214394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6215394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6216394ed5ebSJunchao Zhang 
6217394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6218158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6219158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6220394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6221394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6222394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6223394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6224394ed5ebSJunchao Zhang 
6225394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6226394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6227394ed5ebSJunchao Zhang 
6228394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6229394ed5ebSJunchao Zhang 
6230158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6231394ed5ebSJunchao Zhang */
6232d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6233d71ae5a4SJacob Faibussowitsch {
6234394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6235394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6236394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6237394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6238394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6239394ed5ebSJunchao Zhang 
6240394ed5ebSJunchao Zhang   PetscFunctionBegin;
62419566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62429566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6243394ed5ebSJunchao Zhang   m = rend - rstart;
6244394ed5ebSJunchao Zhang 
6245651b1cf9SStefano Zampini   /* Skip negative rows */
6246651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62479371c9d4SSatish Balay     if (i[k] >= 0) break;
6248394ed5ebSJunchao Zhang 
6249394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6250394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6251394ed5ebSJunchao Zhang   */
6252394ed5ebSJunchao Zhang   while (k < n) {
6253394ed5ebSJunchao Zhang     row = i[k];
6254394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62559371c9d4SSatish Balay     for (s = k; s < n; s++)
62569371c9d4SSatish Balay       if (i[s] != row) break;
6257651b1cf9SStefano Zampini 
6258651b1cf9SStefano Zampini     /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */
6259394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
6260651b1cf9SStefano Zampini       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT;
626154c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6262394ed5ebSJunchao Zhang     }
62639566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6264158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6265394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6266394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6267394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6268394ed5ebSJunchao Zhang 
6269394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6270394ed5ebSJunchao Zhang     Atot += mid - k;
6271394ed5ebSJunchao Zhang     Btot += s - mid;
6272394ed5ebSJunchao Zhang 
6273651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6274394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6275394ed5ebSJunchao Zhang       col = j[p];
62769371c9d4SSatish Balay       do {
6277651b1cf9SStefano Zampini         j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */
62789371c9d4SSatish Balay         p++;
6279651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6280394ed5ebSJunchao Zhang       Annz++;
6281394ed5ebSJunchao Zhang     }
6282394ed5ebSJunchao Zhang 
6283651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6284394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6285394ed5ebSJunchao Zhang       col = j[p];
6286d71ae5a4SJacob Faibussowitsch       do {
6287d71ae5a4SJacob Faibussowitsch         p++;
6288d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6289394ed5ebSJunchao Zhang       Bnnz++;
6290394ed5ebSJunchao Zhang     }
6291394ed5ebSJunchao Zhang     k = s;
6292394ed5ebSJunchao Zhang   }
6293394ed5ebSJunchao Zhang 
6294394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6295158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6296158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6297158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6298158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6299394ed5ebSJunchao Zhang 
63006aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6301394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6302394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6303394ed5ebSJunchao Zhang     k   = rowBegin[r];
6304394ed5ebSJunchao Zhang     mid = rowMid[r];
6305394ed5ebSJunchao Zhang     s   = rowEnd[r];
63068e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
63078e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6308394ed5ebSJunchao Zhang     Atot += mid - k;
6309394ed5ebSJunchao Zhang     Btot += s - mid;
6310394ed5ebSJunchao Zhang 
6311394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6312394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6313394ed5ebSJunchao Zhang       col = j[p];
6314394ed5ebSJunchao Zhang       q   = p;
6315d71ae5a4SJacob Faibussowitsch       do {
6316d71ae5a4SJacob Faibussowitsch         p++;
6317d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6318394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6319394ed5ebSJunchao Zhang       Annz++;
6320394ed5ebSJunchao Zhang     }
6321394ed5ebSJunchao Zhang 
6322394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6323394ed5ebSJunchao Zhang       col = j[p];
6324394ed5ebSJunchao Zhang       q   = p;
6325d71ae5a4SJacob Faibussowitsch       do {
6326d71ae5a4SJacob Faibussowitsch         p++;
6327d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6328394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6329394ed5ebSJunchao Zhang       Bnnz++;
6330394ed5ebSJunchao Zhang     }
6331394ed5ebSJunchao Zhang   }
6332394ed5ebSJunchao Zhang   /* Output */
6333394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6334394ed5ebSJunchao Zhang   *Annz_  = Annz;
6335394ed5ebSJunchao Zhang   *Atot_  = Atot;
6336394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6337394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6338394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6339394ed5ebSJunchao Zhang   *Btot_  = Btot;
6340394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
63413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6342394ed5ebSJunchao Zhang }
6343394ed5ebSJunchao Zhang 
634427430b45SBarry Smith /*
634527430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6346158ec288SJunchao Zhang 
6347158ec288SJunchao Zhang   Input Parameters:
6348158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6349158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6350158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6351651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6352158ec288SJunchao Zhang 
6353158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6354158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6355158ec288SJunchao Zhang 
6356158ec288SJunchao Zhang   Example:
6357158ec288SJunchao Zhang     nnz1 = 4
6358158ec288SJunchao Zhang     nnz  = 6
6359158ec288SJunchao Zhang     imap = [1,3,4,5]
6360158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6361158ec288SJunchao Zhang    then,
6362158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6363158ec288SJunchao Zhang */
6364d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6365d71ae5a4SJacob Faibussowitsch {
6366158ec288SJunchao Zhang   PetscCount k, p;
6367158ec288SJunchao Zhang 
6368158ec288SJunchao Zhang   PetscFunctionBegin;
6369158ec288SJunchao Zhang   jmap_new[0] = 0;
6370158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6371158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6372158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6373158ec288SJunchao Zhang   }
6374158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6376158ec288SJunchao Zhang }
6377158ec288SJunchao Zhang 
63782c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data)
63792c4ab24aSJunchao Zhang {
63802c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data;
63812c4ab24aSJunchao Zhang 
63822c4ab24aSJunchao Zhang   PetscFunctionBegin;
63832c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63842c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63852c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63862c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63872c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63882c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
63892c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
63902c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
63912c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
63922c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
63932c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
63942c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
63952c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
63962c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
63972c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
63982c4ab24aSJunchao Zhang }
63992c4ab24aSJunchao Zhang 
6400d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6401d71ae5a4SJacob Faibussowitsch {
6402394ed5ebSJunchao Zhang   MPI_Comm             comm;
6403394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6404394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6405394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6406394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
64072c4ab24aSJunchao Zhang   PetscContainer       container;
64082c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6409394ed5ebSJunchao Zhang 
6410394ed5ebSJunchao Zhang   PetscFunctionBegin;
64119566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
64129566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6413cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6414eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6415cbc6b225SStefano Zampini #else
64169566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6417cbc6b225SStefano Zampini #endif
64189566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6419cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6420cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6421cbc6b225SStefano Zampini 
64229566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
64239566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
64249566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
64259566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
64269566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
64279566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
64289566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
64299566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
64309566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6431394ed5ebSJunchao Zhang 
64326aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6433394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6434394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6435e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6436e8729f6fSJunchao Zhang 
6437e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6438394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6439394ed5ebSJunchao Zhang 
6440394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6441394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6442394ed5ebSJunchao Zhang      will have positive row indices.
6443394ed5ebSJunchao Zhang   */
6444394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
6445394ed5ebSJunchao Zhang     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT;                /* e.g., -2^31, minimal to move them ahead */
6446394ed5ebSJunchao Zhang     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */
6447f7d195e4SLawrence Mitchell     else {
6448f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
6449f7d195e4SLawrence Mitchell       if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */
6450f7d195e4SLawrence Mitchell     }
6451394ed5ebSJunchao Zhang   }
6452394ed5ebSJunchao Zhang 
6453da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64549566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6455651b1cf9SStefano Zampini 
6456651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6457651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64589371c9d4SSatish Balay     if (i1[k] > PETSC_MIN_INT) break;
6459651b1cf9SStefano Zampini   PetscInt i1start = k;
6460651b1cf9SStefano Zampini 
64619566063dSJacob Faibussowitsch   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */
6462394ed5ebSJunchao Zhang   for (; k < rem; k++) i1[k] += PETSC_MAX_INT;                                    /* Revert row indices of local rows*/
6463394ed5ebSJunchao Zhang 
6464394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6465394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6466394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6467394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6468394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6469394ed5ebSJunchao Zhang   const PetscInt *ranges;
6470394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6471394ed5ebSJunchao Zhang 
64729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6474394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6475394ed5ebSJunchao Zhang     PetscMPIInt owner;
6476394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6477cbc6b225SStefano Zampini 
6478394ed5ebSJunchao Zhang     /* Locate a row range */
6479394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64809566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6481394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6482394ed5ebSJunchao Zhang 
6483394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
64849566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6485394ed5ebSJunchao Zhang 
6486394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6487394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6488394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6489394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6490394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6491cbc6b225SStefano Zampini 
64929566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
64939566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
64949566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
64959566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6496394ed5ebSJunchao Zhang       sendto   = sendto2;
6497394ed5ebSJunchao Zhang       nentries = nentries2;
6498394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6499394ed5ebSJunchao Zhang     }
6500394ed5ebSJunchao Zhang     sendto[nsend]   = owner;
6501394ed5ebSJunchao Zhang     nentries[nsend] = p - k;
65029566063dSJacob Faibussowitsch     PetscCall(PetscCountCast(p - k, &nentries[nsend]));
6503394ed5ebSJunchao Zhang     nsend++;
6504394ed5ebSJunchao Zhang     k = p;
6505394ed5ebSJunchao Zhang   }
6506394ed5ebSJunchao Zhang 
6507394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6508394ed5ebSJunchao Zhang   PetscSF      sf1;
6509394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6510394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6511394ed5ebSJunchao Zhang   PetscInt    *offsets;
6512394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6513394ed5ebSJunchao Zhang 
65149566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
65159566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
65169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6517394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6518394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6519394ed5ebSJunchao Zhang     iremote[k].index = 0;
6520394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
652154c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6522394ed5ebSJunchao Zhang   }
65239566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
65249566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
65259566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
65269566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6527e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6528394ed5ebSJunchao Zhang 
6529394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6530394ed5ebSJunchao Zhang   PetscSF sf2;
6531394ed5ebSJunchao Zhang   nroots  = nroots2;
6532394ed5ebSJunchao Zhang   nleaves = nleaves2;
65339566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
65349566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
65359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6536394ed5ebSJunchao Zhang   p = 0;
6537394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
653854c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6539394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6540394ed5ebSJunchao Zhang       iremote[p].rank  = sendto[k];
6541394ed5ebSJunchao Zhang       iremote[p].index = offsets[k] + q;
6542394ed5ebSJunchao Zhang     }
6543394ed5ebSJunchao Zhang   }
65449566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6545394ed5ebSJunchao Zhang 
6546394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6547394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6548394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65499566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6550834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6551834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6552834dcf29SHansol Suh   PetscInt *i1prem = i1 ? i1 + rem : NULL; /* silence ubsan warnings about pointer arithmetic on null pointer */
6553834dcf29SHansol Suh   PetscInt *j1prem = j1 ? j1 + rem : NULL;
6554834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6555834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6556834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6557834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6558394ed5ebSJunchao Zhang 
65599566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65609566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6561394ed5ebSJunchao Zhang 
6562394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6563394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65649566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6565394ed5ebSJunchao Zhang 
6566651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6567651b1cf9SStefano Zampini   PetscCount *Cperm1;
6568834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6569834dcf29SHansol Suh   PetscCount *perm1prem = perm1 ? perm1 + rem : NULL;
6570651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6571834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6572651b1cf9SStefano Zampini 
6573651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6574651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6575651b1cf9SStefano Zampini   PetscBool   hypre;
6576651b1cf9SStefano Zampini   const char *name;
6577651b1cf9SStefano Zampini   PetscCall(PetscObjectGetName((PetscObject)mat, &name));
6578651b1cf9SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre));
6579651b1cf9SStefano Zampini   if (hypre) {
6580651b1cf9SStefano Zampini     PetscInt *minj;
6581651b1cf9SStefano Zampini     PetscBT   hasdiag;
6582651b1cf9SStefano Zampini 
6583651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6584651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
6585651b1cf9SStefano Zampini     for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT;
6586651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6587651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6588651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6589651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6590651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6591651b1cf9SStefano Zampini     }
6592651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6593651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6594651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6595651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6596651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6597651b1cf9SStefano Zampini     }
6598651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6599651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6600651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6601651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6602651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6603651b1cf9SStefano Zampini     }
6604651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6605651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6606651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6607651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6608651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6609651b1cf9SStefano Zampini     }
6610651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6611651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6612651b1cf9SStefano Zampini   }
6613651b1cf9SStefano Zampini 
6614651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6615651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6616651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6617651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6618394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6619394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6620394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6621394ed5ebSJunchao Zhang 
6622651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
66239566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6624651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
66259566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6626394ed5ebSJunchao Zhang 
6627394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6628394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6629394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6630394ed5ebSJunchao Zhang 
66319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
66329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
66339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
66349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6635394ed5ebSJunchao Zhang 
6636394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6637158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6638158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6639158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6640158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6641394ed5ebSJunchao Zhang 
66429566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66439566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6644158ec288SJunchao Zhang 
6645158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6646158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6647158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6648158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6649158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6650158ec288SJunchao Zhang 
6651158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6652158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6653158ec288SJunchao Zhang 
6654158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6655158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6656158ec288SJunchao Zhang 
6657158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6658158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6659158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6660158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66619566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66629566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6663e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66649566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6665394ed5ebSJunchao Zhang 
6666158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6667158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6668158ec288SJunchao Zhang 
6669394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6670394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6671394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66729566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66739566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66749566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6675394ed5ebSJunchao Zhang     Aj = Aj_new;
6676394ed5ebSJunchao Zhang   }
6677394ed5ebSJunchao Zhang 
6678394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6679394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66809566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66819566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66829566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6683394ed5ebSJunchao Zhang     Bj = Bj_new;
6684394ed5ebSJunchao Zhang   }
6685394ed5ebSJunchao Zhang 
6686cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6687394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6688cbc6b225SStefano Zampini   MatType          rtype;
6689394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6690cf8ba265SJunchao Zhang   PetscObjectState state;
66919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
66929566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6693394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
66949371c9d4SSatish Balay   if (cstart) {
66959371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
66969371c9d4SSatish Balay   }
6697c508b908SBarry Smith 
66989566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6699c508b908SBarry Smith 
6700c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6701c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
67029566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
67030da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6704c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6705c508b908SBarry Smith 
6706c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6707c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
67089566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
67090da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6710c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6711c508b908SBarry Smith 
67129566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
67135bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6714cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6715cf8ba265SJunchao Zhang   PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6716cbc6b225SStefano Zampini 
6717394ed5ebSJunchao Zhang   a               = (Mat_SeqAIJ *)mpiaij->A->data;
6718394ed5ebSJunchao Zhang   b               = (Mat_SeqAIJ *)mpiaij->B->data;
6719394ed5ebSJunchao Zhang   a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */
6720394ed5ebSJunchao Zhang   a->free_a = b->free_a = PETSC_TRUE;
6721394ed5ebSJunchao Zhang   a->free_ij = b->free_ij = PETSC_TRUE;
6722394ed5ebSJunchao Zhang 
6723cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
67249566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
67259566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
67269566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
67279566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6728cbc6b225SStefano Zampini 
67292c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
67302c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
67312c4ab24aSJunchao Zhang   coo->n       = coo_n;
67322c4ab24aSJunchao Zhang   coo->sf      = sf2;
67332c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
67342c4ab24aSJunchao Zhang   coo->recvlen = nroots;
67352c4ab24aSJunchao Zhang   coo->Annz    = Annz;
67362c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
67372c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
67382c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
67392c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67402c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67412c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67422c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67432c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67442c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67452c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67462c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67472c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67482c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67492c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67502c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67512c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67522c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67532c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67542c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67552c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67562c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67572c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
67582c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ));
67592c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67602c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6762394ed5ebSJunchao Zhang }
6763394ed5ebSJunchao Zhang 
6764d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6765d71ae5a4SJacob Faibussowitsch {
6766394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6767394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6768394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67692c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67702c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67712c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67722c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67732c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67742c4ab24aSJunchao Zhang   PetscContainer       container;
67752c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6776394ed5ebSJunchao Zhang 
6777394ed5ebSJunchao Zhang   PetscFunctionBegin;
67782c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67792c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67802c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67812c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67822c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67832c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67842c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67852c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67862c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67872c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67882c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
67892c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
67902c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
67912c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
67922c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
67932c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
67942c4ab24aSJunchao Zhang 
67959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
67969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6797394ed5ebSJunchao Zhang 
6798394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
67992c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6800394ed5ebSJunchao Zhang 
6801394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
68022c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6803394ed5ebSJunchao Zhang   /* Add local entries to A and B */
68042c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6805da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6806158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6807158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6808394ed5ebSJunchao Zhang   }
68092c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6810158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6811158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6812158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6813394ed5ebSJunchao Zhang   }
68142c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6815394ed5ebSJunchao Zhang 
6816394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
68172c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6818394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6819394ed5ebSJunchao Zhang   }
68202c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6821394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6822394ed5ebSJunchao Zhang   }
68239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
68249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
68253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6826394ed5ebSJunchao Zhang }
6827394ed5ebSJunchao Zhang 
6828ccd8e176SBarry Smith /*MC
6829ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6830ccd8e176SBarry Smith 
6831ccd8e176SBarry Smith    Options Database Keys:
683211a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6833ccd8e176SBarry Smith 
6834ccd8e176SBarry Smith    Level: beginner
68350cd7f59aSBarry Smith 
68360cd7f59aSBarry Smith    Notes:
68372ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
68380cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
68390cd7f59aSBarry Smith     in the matrix
68400cd7f59aSBarry Smith 
684111a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
684211a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6843ccd8e176SBarry Smith 
68441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6845ccd8e176SBarry Smith M*/
6846d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6847d71ae5a4SJacob Faibussowitsch {
6848ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6849ccd8e176SBarry Smith   PetscMPIInt size;
6850ccd8e176SBarry Smith 
6851ccd8e176SBarry Smith   PetscFunctionBegin;
68529566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68532205254eSKarl Rupp 
68544dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6855ccd8e176SBarry Smith   B->data       = (void *)b;
6856aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6857ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6858ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6859ccd8e176SBarry Smith   b->size       = size;
68602205254eSKarl Rupp 
68619566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6862ccd8e176SBarry Smith 
6863ccd8e176SBarry Smith   /* build cache for off array entries formed */
68649566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68652205254eSKarl Rupp 
6866ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6867f4259b30SLisandro Dalcin   b->colmap      = NULL;
6868f4259b30SLisandro Dalcin   b->garray      = NULL;
6869ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6870ccd8e176SBarry Smith 
6871ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68720298fd71SBarry Smith   b->lvec  = NULL;
68730298fd71SBarry Smith   b->Mvctx = NULL;
6874ccd8e176SBarry Smith 
6875ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6876f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6877f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6878ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6879ccd8e176SBarry Smith 
6880f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68810298fd71SBarry Smith   b->spptr = NULL;
6882f60c3dc2SHong Zhang 
68839566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68849566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68859566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68869566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68879566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68889566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
68899566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
68909566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
68919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
68929566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
68933d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
68949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
68953d0639e7SStefano Zampini #endif
6896d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6897d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6898d5e393b6SSuyash Tandon #endif
68993d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
69009566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
69013d0639e7SStefano Zampini #endif
69029779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
69039566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6904191b95cbSRichard Tran Mills #endif
69059566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
69069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
69079566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
69089566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
69095d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
69109566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
69115d7652ecSHong Zhang #endif
6912d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
69139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6914d24d4204SJose E. Roman #endif
69159566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
69169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
69173dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
69189566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
69199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
69203dad0653Sstefano_zampini #endif
69219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
69229566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
69239566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
69249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
69259566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
69263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6927ccd8e176SBarry Smith }
692881824310SBarry Smith 
6929cce60c4dSBarry Smith /*@C
693011a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
693103bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
693203bfb495SBarry Smith 
6933d083f849SBarry Smith   Collective
693403bfb495SBarry Smith 
693503bfb495SBarry Smith   Input Parameters:
693603bfb495SBarry Smith + comm - MPI communicator
693711a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
693803bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6939d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
69402ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
69412ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69422ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6943483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
694404ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
694503bfb495SBarry Smith . a    - matrix values
6946483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69472ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
694803bfb495SBarry Smith - oa   - matrix values
694903bfb495SBarry Smith 
695003bfb495SBarry Smith   Output Parameter:
695103bfb495SBarry Smith . mat - the matrix
695203bfb495SBarry Smith 
695303bfb495SBarry Smith   Level: advanced
695403bfb495SBarry Smith 
695503bfb495SBarry Smith   Notes:
69562ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc. The user
6957292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
695803bfb495SBarry Smith 
69592ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
696003bfb495SBarry Smith 
69612ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
696203bfb495SBarry Smith 
69637b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69647b55108eSBarry Smith 
6965dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6966dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6967dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6968dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
696911a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6970dca341c0SJed Brown   communication if it is known that only local entries will be set.
697103bfb495SBarry Smith 
69721cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6973db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69742b26979fSBarry Smith @*/
6975d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6976d71ae5a4SJacob Faibussowitsch {
697703bfb495SBarry Smith   Mat_MPIAIJ *maij;
697803bfb495SBarry Smith 
697903bfb495SBarry Smith   PetscFunctionBegin;
698008401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6981aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6982aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69839566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69849566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69859566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
698603bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69872205254eSKarl Rupp 
69888d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
698903bfb495SBarry Smith 
69909566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
69919566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
699203bfb495SBarry Smith 
69939566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
69949566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
699503bfb495SBarry Smith 
69969566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
69979566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
69989566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
69999566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
70009566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
70013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
700203bfb495SBarry Smith }
700303bfb495SBarry Smith 
70044e84afc0SStefano Zampini typedef struct {
70054e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
70064e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
70074e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
70084e84afc0SStefano Zampini 
70094e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
70104e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
70114e84afc0SStefano Zampini   PetscScalar *bufa;
70124e84afc0SStefano Zampini   Mat          P_oth;
70134e84afc0SStefano Zampini 
70144e84afc0SStefano Zampini   /* may take advantage of merging product->B */
7015ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
70164e84afc0SStefano Zampini 
7017ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
70184e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
70194e84afc0SStefano Zampini      of the temporary storage */
70204e84afc0SStefano Zampini   PetscBool reusesym;
70214e84afc0SStefano Zampini 
70224e84afc0SStefano Zampini   /* support for COO values insertion */
7023ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
7024ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
7025ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
7026ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
7027c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
7028c215019aSStefano Zampini   PetscMemType mtype;
70294e84afc0SStefano Zampini 
70304e84afc0SStefano Zampini   /* customization */
70314e84afc0SStefano Zampini   PetscBool abmerge;
7032abb89eb1SStefano Zampini   PetscBool P_oth_bind;
70334e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
70344e84afc0SStefano Zampini 
7035ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
7036d71ae5a4SJacob Faibussowitsch {
70374e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
70384e84afc0SStefano Zampini   PetscInt             i;
70394e84afc0SStefano Zampini 
70404e84afc0SStefano Zampini   PetscFunctionBegin;
70419566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70429566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70439566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70449566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70459566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70469566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70479566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
704848a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70499566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70509566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70519566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70529566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70539566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70549566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70564e84afc0SStefano Zampini }
70574e84afc0SStefano Zampini 
7058fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7059fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7060fff043a9SJunchao Zhang  */
7061d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7062d71ae5a4SJacob Faibussowitsch {
7063c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7064c215019aSStefano Zampini 
7065c215019aSStefano Zampini   PetscFunctionBegin;
70669566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7067c215019aSStefano Zampini   if (f) {
70689566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7069c215019aSStefano Zampini   } else {
7070c215019aSStefano Zampini     const PetscScalar *vv;
7071c215019aSStefano Zampini 
70729566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7073c215019aSStefano Zampini     if (n && idx) {
7074c215019aSStefano Zampini       PetscScalar    *w  = v;
7075c215019aSStefano Zampini       const PetscInt *oi = idx;
7076c215019aSStefano Zampini       PetscInt        j;
7077c215019aSStefano Zampini 
7078c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7079c215019aSStefano Zampini     } else {
70809566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7081c215019aSStefano Zampini     }
70829566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7083c215019aSStefano Zampini   }
70843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7085c215019aSStefano Zampini }
7086c215019aSStefano Zampini 
7087d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7088d71ae5a4SJacob Faibussowitsch {
70894e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
70904e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
70914e84afc0SStefano Zampini 
70924e84afc0SStefano Zampini   PetscFunctionBegin;
70934e84afc0SStefano Zampini   MatCheckProduct(C, 1);
709428b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
70954e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
70964e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
709748a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
709848a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
70994e84afc0SStefano Zampini   }
71004e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7101abb89eb1SStefano Zampini 
7102abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
710308401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
71049566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7105abb89eb1SStefano Zampini   }
71064e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
71074e84afc0SStefano Zampini     PetscInt noff = mmdata->off[i + 1] - mmdata->off[i];
71084e84afc0SStefano Zampini 
71094e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
71104e84afc0SStefano Zampini     if (noff) {
7111c215019aSStefano Zampini       PetscInt nown = mmdata->own[i + 1] - mmdata->own[i];
7112c215019aSStefano Zampini 
71139566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
71149566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
71154e84afc0SStefano Zampini       n_o += noff;
71164e84afc0SStefano Zampini       n_d += nown;
71174e84afc0SStefano Zampini     } else {
7118c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7119c215019aSStefano Zampini 
71209566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
71214e84afc0SStefano Zampini       n_d += mm->nz;
71224e84afc0SStefano Zampini     }
71234e84afc0SStefano Zampini   }
7124c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
71259566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71269566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71274e84afc0SStefano Zampini   }
71289566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
71293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71304e84afc0SStefano Zampini }
71314e84afc0SStefano Zampini 
71324e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
71334e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7134d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7135d71ae5a4SJacob Faibussowitsch {
71364e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7137ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
71384e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
71394e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71404e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71414e84afc0SStefano Zampini   IS                     glob      = NULL;
71424e84afc0SStefano Zampini   const char            *prefix;
71434e84afc0SStefano Zampini   char                   pprefix[256];
71444e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
714582a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
714682a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7147ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7148ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7149ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7150ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7151ddea5d60SJunchao Zhang 
71524e84afc0SStefano Zampini   MatProductType ptype;
7153d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71544e84afc0SStefano Zampini   PetscMPIInt    size;
71554e84afc0SStefano Zampini 
71564e84afc0SStefano Zampini   PetscFunctionBegin;
71574e84afc0SStefano Zampini   MatCheckProduct(C, 1);
715828b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71594e84afc0SStefano Zampini   ptype = product->type;
7160b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7161fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7162fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7163fa046f9fSJunchao Zhang   }
71644e84afc0SStefano Zampini   switch (ptype) {
71654e84afc0SStefano Zampini   case MATPRODUCT_AB:
71664e84afc0SStefano Zampini     A          = product->A;
71674e84afc0SStefano Zampini     P          = product->B;
71684e84afc0SStefano Zampini     m          = A->rmap->n;
71694e84afc0SStefano Zampini     n          = P->cmap->n;
71704e84afc0SStefano Zampini     M          = A->rmap->N;
71714e84afc0SStefano Zampini     N          = P->cmap->N;
7172ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71734e84afc0SStefano Zampini     break;
71744e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71754e84afc0SStefano Zampini     P          = product->A;
71764e84afc0SStefano Zampini     A          = product->B;
71774e84afc0SStefano Zampini     m          = P->cmap->n;
71784e84afc0SStefano Zampini     n          = A->cmap->n;
71794e84afc0SStefano Zampini     M          = P->cmap->N;
71804e84afc0SStefano Zampini     N          = A->cmap->N;
71814e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71824e84afc0SStefano Zampini     break;
71834e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71844e84afc0SStefano Zampini     A          = product->A;
71854e84afc0SStefano Zampini     P          = product->B;
71864e84afc0SStefano Zampini     m          = P->cmap->n;
71874e84afc0SStefano Zampini     n          = P->cmap->n;
71884e84afc0SStefano Zampini     M          = P->cmap->N;
71894e84afc0SStefano Zampini     N          = P->cmap->N;
71904e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71914e84afc0SStefano Zampini     break;
7192d71ae5a4SJacob Faibussowitsch   default:
7193d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
71944e84afc0SStefano Zampini   }
71959566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
71964e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
71974e84afc0SStefano Zampini 
71984e84afc0SStefano Zampini   /* defaults */
71994e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
72004e84afc0SStefano Zampini     mp[i]    = NULL;
72014e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
72024e84afc0SStefano Zampini     rmapt[i] = -1;
72034e84afc0SStefano Zampini     cmapt[i] = -1;
72044e84afc0SStefano Zampini     rmapa[i] = NULL;
72054e84afc0SStefano Zampini     cmapa[i] = NULL;
72064e84afc0SStefano Zampini   }
72074e84afc0SStefano Zampini 
72084e84afc0SStefano Zampini   /* customization */
72099566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
72104e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
72114e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
72124e84afc0SStefano Zampini     if (product->api_user) {
7213d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
72149566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72159566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7216d0609cedSBarry Smith       PetscOptionsEnd();
72174e84afc0SStefano Zampini     } else {
7218d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
72199566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72209566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7221d0609cedSBarry Smith       PetscOptionsEnd();
7222abb89eb1SStefano Zampini     }
7223abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7224abb89eb1SStefano Zampini     if (product->api_user) {
7225d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
72269566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7227d0609cedSBarry Smith       PetscOptionsEnd();
7228abb89eb1SStefano Zampini     } else {
7229d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
72309566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7231d0609cedSBarry Smith       PetscOptionsEnd();
72324e84afc0SStefano Zampini     }
72334e84afc0SStefano Zampini   }
72344e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
72354e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
72369566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
72379566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
72389566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
72399566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72409566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7241ddea5d60SJunchao Zhang 
7242ddea5d60SJunchao Zhang   cp = 0;
72434e84afc0SStefano Zampini   switch (ptype) {
72444e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72459566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72464e84afc0SStefano Zampini 
7247ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7248ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72494e84afc0SStefano Zampini       /* P is product->B */
72509566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72519566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72529566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72539566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72549566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72559566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72569566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72574e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72589566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72599566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72609566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72614e84afc0SStefano Zampini       rmapt[cp] = 1;
72624e84afc0SStefano Zampini       cmapt[cp] = 2;
72634e84afc0SStefano Zampini       cmapa[cp] = globidx;
72644e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72654e84afc0SStefano Zampini       cp++;
7266ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72679566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72689566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72699566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72709566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72719566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72729566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72734e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72749566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72759566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72764e84afc0SStefano Zampini       rmapt[cp] = 1;
72774e84afc0SStefano Zampini       cmapt[cp] = 1;
72784e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72794e84afc0SStefano Zampini       cp++;
72809566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72819566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72829566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72839566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72849566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72859566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72864e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72879566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72889566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72894e84afc0SStefano Zampini       rmapt[cp] = 1;
72904e84afc0SStefano Zampini       cmapt[cp] = 2;
72914e84afc0SStefano Zampini       cmapa[cp] = p->garray;
72924e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72934e84afc0SStefano Zampini       cp++;
72944e84afc0SStefano Zampini     }
7295ddea5d60SJunchao Zhang 
7296ddea5d60SJunchao Zhang     /* A_off * P_other */
72974e84afc0SStefano Zampini     if (mmdata->P_oth) {
72989566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
72999566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7300f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73019566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73029566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73039566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73049566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73059566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73069566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73079566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73084e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73099566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73109566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73114e84afc0SStefano Zampini       rmapt[cp] = 1;
73124e84afc0SStefano Zampini       cmapt[cp] = 2;
73134e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73144e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73154e84afc0SStefano Zampini       cp++;
73164e84afc0SStefano Zampini     }
73174e84afc0SStefano Zampini     break;
7318ddea5d60SJunchao Zhang 
73194e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
73204e84afc0SStefano Zampini     /* A is product->B */
73219566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7322ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
73239566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
73249566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73259566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73269566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73279566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73289566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73294e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73309566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73319566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73329566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73334e84afc0SStefano Zampini       rmapt[cp] = 2;
73344e84afc0SStefano Zampini       rmapa[cp] = globidx;
73354e84afc0SStefano Zampini       cmapt[cp] = 2;
73364e84afc0SStefano Zampini       cmapa[cp] = globidx;
73374e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73384e84afc0SStefano Zampini       cp++;
73394e84afc0SStefano Zampini     } else {
73409566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73419566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73429566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73439566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73449566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73459566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73464e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73479566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73489566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73499566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73504e84afc0SStefano Zampini       rmapt[cp] = 1;
73514e84afc0SStefano Zampini       cmapt[cp] = 2;
73524e84afc0SStefano Zampini       cmapa[cp] = globidx;
73534e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73544e84afc0SStefano Zampini       cp++;
73559566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73569566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73579566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73589566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73599566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73609566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73614e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73629566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73639566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73644e84afc0SStefano Zampini       rmapt[cp] = 2;
73654e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73664e84afc0SStefano Zampini       cmapt[cp] = 2;
73674e84afc0SStefano Zampini       cmapa[cp] = globidx;
73684e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73694e84afc0SStefano Zampini       cp++;
73704e84afc0SStefano Zampini     }
73714e84afc0SStefano Zampini     break;
73724e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73739566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73744e84afc0SStefano Zampini     /* P is product->B */
73759566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73769566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73779566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73789566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73799566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73809566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73819566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73824e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73839566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73849566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73859566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73864e84afc0SStefano Zampini     rmapt[cp] = 2;
73874e84afc0SStefano Zampini     rmapa[cp] = globidx;
73884e84afc0SStefano Zampini     cmapt[cp] = 2;
73894e84afc0SStefano Zampini     cmapa[cp] = globidx;
73904e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
73914e84afc0SStefano Zampini     cp++;
73924e84afc0SStefano Zampini     if (mmdata->P_oth) {
73939566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
73949566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7395f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73969566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73979566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73989566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73999566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74009566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74019566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74029566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74034e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74049566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74059566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74064e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
74074e84afc0SStefano Zampini       cp++;
74089566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
74099566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
74109566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74119566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74129566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74139566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74144e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74159566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74169566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74174e84afc0SStefano Zampini       rmapt[cp] = 2;
74184e84afc0SStefano Zampini       rmapa[cp] = globidx;
74194e84afc0SStefano Zampini       cmapt[cp] = 2;
74204e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
74214e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74224e84afc0SStefano Zampini       cp++;
74234e84afc0SStefano Zampini     }
74244e84afc0SStefano Zampini     break;
7425d71ae5a4SJacob Faibussowitsch   default:
7426d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
74274e84afc0SStefano Zampini   }
74284e84afc0SStefano Zampini   /* sanity check */
74299371c9d4SSatish Balay   if (size > 1)
74309371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
74314e84afc0SStefano Zampini 
74329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7433ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7434ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7435ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7436ddea5d60SJunchao Zhang   }
74374e84afc0SStefano Zampini   mmdata->cp             = cp;
74384e84afc0SStefano Zampini   C->product->data       = mmdata;
74394e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74404e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74414e84afc0SStefano Zampini 
7442c215019aSStefano Zampini   /* memory type */
7443c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74449566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7445d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74469566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7447c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7448d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74493214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7450c215019aSStefano Zampini 
74514e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7452ddea5d60SJunchao Zhang 
7453ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7454ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7455ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7456ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7457ddea5d60SJunchao Zhang   */
74584e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74594e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74604e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7461ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74624e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74634e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74644e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74654e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74664e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74674e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74684e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74694e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7470ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7471ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74724e84afc0SStefano Zampini       }
74734e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74744e84afc0SStefano Zampini   }
7475ddea5d60SJunchao Zhang 
7476ddea5d60SJunchao Zhang   /*
7477ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7478ddea5d60SJunchao Zhang 
7479ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7480ddea5d60SJunchao Zhang 
7481d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7482ddea5d60SJunchao Zhang 
7483ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7484ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7485ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7486ddea5d60SJunchao Zhang 
7487ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7488da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7489ddea5d60SJunchao Zhang   */
74909566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
74919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7492ddea5d60SJunchao Zhang 
7493ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7494ddea5d60SJunchao Zhang   if (hasoffproc) {
74954e84afc0SStefano Zampini     PetscSF  msf;
74964e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
74974e84afc0SStefano Zampini 
74989566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
74999566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
75009566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7501ddea5d60SJunchao Zhang 
75024e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
75034e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
75044e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
75054e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7506ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
75074e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
75084e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
75094e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
75104e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
75114e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
75124e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
75134e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
75144e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
75154e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
75164e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
75174e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
75184e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
75194e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7520ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
75214e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
75224e84afc0SStefano Zampini               *coi++    = gr;
75234e84afc0SStefano Zampini               *idxoff++ = j;
75244e84afc0SStefano Zampini             }
75254e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
75264e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
75274e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75284e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
75294e84afc0SStefano Zampini             } else { /* offdiag */
75304e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75314e84afc0SStefano Zampini             }
75324e84afc0SStefano Zampini             ncoo_o += nz;
7533ddea5d60SJunchao Zhang           } else { /* this is a local row */
75344e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
75354e84afc0SStefano Zampini           }
75364e84afc0SStefano Zampini         }
75374e84afc0SStefano Zampini       }
75384e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
75394e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75404e84afc0SStefano Zampini     }
75414e84afc0SStefano Zampini 
75429566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75439566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75449566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75459566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75464e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75479566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75489566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75499566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75509566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75519566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75529566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7553ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75549566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75554e84afc0SStefano Zampini     coo_i = coo_i2;
75564e84afc0SStefano Zampini     coo_j = coo_j2;
75574e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75584e84afc0SStefano Zampini     ncoo = ncoo_d;
75599566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7560c215019aSStefano Zampini 
75619566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75629566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75639566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75644e84afc0SStefano Zampini   }
7565c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75664e84afc0SStefano Zampini 
7567ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75684e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75694e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75704e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75714e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75724e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75734e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75744e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75754e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75764e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75774e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75784e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75794e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75804e84afc0SStefano Zampini 
75814e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7582ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7583ddea5d60SJunchao Zhang       /* fill coo_i */
75844e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75854e84afc0SStefano Zampini         const PetscInt gr = i + rs;
75864e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
75874e84afc0SStefano Zampini       }
7588ddea5d60SJunchao Zhang       /* fill coo_j */
7589ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
75909566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7591ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7592ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7593ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
75944e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
75954e84afc0SStefano Zampini       }
75964e84afc0SStefano Zampini       ncoo_d += mm->nz;
7597ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
75984e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75994e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
76004e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
76014e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7602ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
76034e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7604ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
76054e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
76064e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
76074e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7608ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
76094e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
76104e84afc0SStefano Zampini           }
76114e84afc0SStefano Zampini           ncoo_d += nz;
76124e84afc0SStefano Zampini         }
76134e84afc0SStefano Zampini       }
76144e84afc0SStefano Zampini     }
76154e84afc0SStefano Zampini   }
761648a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
76179566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
761848a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
76199566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7620ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
76219566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
76224e84afc0SStefano Zampini 
76234e84afc0SStefano Zampini   /* preallocate with COO data */
76249566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76259566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76274e84afc0SStefano Zampini }
76284e84afc0SStefano Zampini 
7629d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7630d71ae5a4SJacob Faibussowitsch {
76314e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76324e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76334e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7634abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76354e84afc0SStefano Zampini #else
76364e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76374e84afc0SStefano Zampini #endif
76384e84afc0SStefano Zampini 
76394e84afc0SStefano Zampini   PetscFunctionBegin;
76404e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76414e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
764248a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
764365e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7644abb89eb1SStefano Zampini     switch (product->type) {
7645abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7646abb89eb1SStefano Zampini       if (product->api_user) {
7647d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76489566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7649d0609cedSBarry Smith         PetscOptionsEnd();
7650abb89eb1SStefano Zampini       } else {
7651d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76529566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7653d0609cedSBarry Smith         PetscOptionsEnd();
7654abb89eb1SStefano Zampini       }
7655abb89eb1SStefano Zampini       break;
7656abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7657abb89eb1SStefano Zampini       if (product->api_user) {
7658d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76599566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7660d0609cedSBarry Smith         PetscOptionsEnd();
7661abb89eb1SStefano Zampini       } else {
7662d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76639566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7664d0609cedSBarry Smith         PetscOptionsEnd();
7665abb89eb1SStefano Zampini       }
7666abb89eb1SStefano Zampini       break;
7667abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7668abb89eb1SStefano Zampini       if (product->api_user) {
7669d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76709566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7671d0609cedSBarry Smith         PetscOptionsEnd();
7672abb89eb1SStefano Zampini       } else {
7673d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76749566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7675d0609cedSBarry Smith         PetscOptionsEnd();
7676abb89eb1SStefano Zampini       }
7677abb89eb1SStefano Zampini       break;
7678d71ae5a4SJacob Faibussowitsch     default:
7679d71ae5a4SJacob Faibussowitsch       break;
7680abb89eb1SStefano Zampini     }
7681abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7682abb89eb1SStefano Zampini   }
76834e84afc0SStefano Zampini #endif
76844e84afc0SStefano Zampini   if (match) {
76854e84afc0SStefano Zampini     switch (product->type) {
76864e84afc0SStefano Zampini     case MATPRODUCT_AB:
76874e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7688d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7689d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7690d71ae5a4SJacob Faibussowitsch       break;
7691d71ae5a4SJacob Faibussowitsch     default:
7692d71ae5a4SJacob Faibussowitsch       break;
76934e84afc0SStefano Zampini     }
76944e84afc0SStefano Zampini   }
76954e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
76969566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
76973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
769881824310SBarry Smith }
769998921bdaSJacob Faibussowitsch 
770098921bdaSJacob Faibussowitsch /*
770172833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
770272833a62Smarkadams4 
770372833a62Smarkadams4    n - the number of block indices in cc[]
770472833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
770572833a62Smarkadams4 */
7706d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7707d71ae5a4SJacob Faibussowitsch {
770872833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
770972833a62Smarkadams4   const PetscInt *idx;
771072833a62Smarkadams4 
771172833a62Smarkadams4   PetscFunctionBegin;
771272833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
771372833a62Smarkadams4   if (nidx) {
771472833a62Smarkadams4     cnt     = 0;
771572833a62Smarkadams4     cc[cnt] = idx[0] / bs;
771672833a62Smarkadams4     for (j = 1; j < nidx; j++) {
771772833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
771872833a62Smarkadams4     }
771972833a62Smarkadams4   }
772072833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
772172833a62Smarkadams4   *n = cnt + 1;
77223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
772372833a62Smarkadams4 }
772472833a62Smarkadams4 
772572833a62Smarkadams4 /*
772672833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
772772833a62Smarkadams4 
772872833a62Smarkadams4     ncollapsed - the number of block indices
772972833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
773072833a62Smarkadams4 */
7731d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7732d71ae5a4SJacob Faibussowitsch {
773372833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
773472833a62Smarkadams4 
773572833a62Smarkadams4   PetscFunctionBegin;
773672833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
773772833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
773872833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
773972833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77409371c9d4SSatish Balay     cprevtmp = cprev;
77419371c9d4SSatish Balay     cprev    = merged;
77429371c9d4SSatish Balay     merged   = cprevtmp;
774372833a62Smarkadams4   }
774472833a62Smarkadams4   *ncollapsed = nprev;
774572833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
774772833a62Smarkadams4 }
774872833a62Smarkadams4 
77492d776b49SBarry Smith /*
775072833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
775172833a62Smarkadams4 
775272833a62Smarkadams4  Input Parameter:
775372833a62Smarkadams4  . Amat - matrix
775472833a62Smarkadams4  - symmetrize - make the result symmetric
775572833a62Smarkadams4  + scale - scale with diagonal
775672833a62Smarkadams4 
775772833a62Smarkadams4  Output Parameter:
775872833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
775972833a62Smarkadams4 
776072833a62Smarkadams4 */
7761e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7762d71ae5a4SJacob Faibussowitsch {
776372833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
776472833a62Smarkadams4   MPI_Comm  comm;
776572833a62Smarkadams4   Mat       Gmat;
776672833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
776772833a62Smarkadams4   Mat       a, b, c;
776872833a62Smarkadams4   MatType   jtype;
776972833a62Smarkadams4 
777072833a62Smarkadams4   PetscFunctionBegin;
777172833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
777272833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
777372833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
777472833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
777572833a62Smarkadams4   nloc = (Iend - Istart) / bs;
777672833a62Smarkadams4 
777772833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
777872833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
777972833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
778072833a62Smarkadams4 
778172833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
778272833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
778372833a62Smarkadams4      implementation */
778472833a62Smarkadams4   if (bs > 1) {
778572833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
778672833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
778772833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
778872833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
778972833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
779072833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
779172833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
77922cf69117Smarkadams4       MatScalar *aa, val, *AA;
77932cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
77949371c9d4SSatish Balay       if (isseqaij) {
77959371c9d4SSatish Balay         a = Amat;
77969371c9d4SSatish Balay         b = NULL;
77979371c9d4SSatish Balay       } else {
779872833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
77999371c9d4SSatish Balay         a             = d->A;
78009371c9d4SSatish Balay         b             = d->B;
780172833a62Smarkadams4       }
780272833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
780372833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
780472833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
78052cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
780659ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
780759ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
780859ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
780959ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
781059ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
781172833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
781259ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
781359ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
781459ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
781559ee9f9fSPierre Jolivet             else {
781659ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
781759ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
781859ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
781972833a62Smarkadams4               }
782059ee9f9fSPierre Jolivet             }
782159ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
782259ee9f9fSPierre Jolivet           }
782359ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
782472833a62Smarkadams4           if (!ok) {
782572833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
782659ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
782772833a62Smarkadams4             goto old_bs;
782872833a62Smarkadams4           }
782972833a62Smarkadams4         }
783072833a62Smarkadams4       }
783172833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
783272833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
783372833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78342cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
783572833a62Smarkadams4       // diag
783672833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
783772833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
783872833a62Smarkadams4         ai               = aseq->i;
783972833a62Smarkadams4         n                = ai[brow + 1] - ai[brow];
784072833a62Smarkadams4         aj               = aseq->j + ai[brow];
784172833a62Smarkadams4         for (int k = 0; k < n; k += bs) {        // block columns
784272833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
784372833a62Smarkadams4           val        = 0;
7844e02fb3cdSMark Adams           if (index_size == 0) {
784572833a62Smarkadams4             for (int ii = 0; ii < bs; ii++) { // rows in block
784672833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
784772833a62Smarkadams4               for (int jj = 0; jj < bs; jj++) {         // columns in block
784872833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
784972833a62Smarkadams4               }
785072833a62Smarkadams4             }
7851e02fb3cdSMark Adams           } else {                                       // use (index,index) value if provided
7852e02fb3cdSMark Adams             for (int iii = 0; iii < index_size; iii++) { // rows in block
7853e02fb3cdSMark Adams               int ii = index[iii];
7854e02fb3cdSMark Adams               aa     = aseq->a + ai[brow + ii] + k;
7855e02fb3cdSMark Adams               for (int jjj = 0; jjj < index_size; jjj++) { // columns in block
7856e02fb3cdSMark Adams                 int jj = index[jjj];
7857cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7858e02fb3cdSMark Adams               }
7859e02fb3cdSMark Adams             }
7860e02fb3cdSMark Adams           }
786159ee9f9fSPierre Jolivet           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
786272833a62Smarkadams4           AA[k / bs] = val;
786372833a62Smarkadams4         }
786472833a62Smarkadams4         grow = Istart / bs + brow / bs;
786572833a62Smarkadams4         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, INSERT_VALUES));
786672833a62Smarkadams4       }
786772833a62Smarkadams4       // off-diag
786872833a62Smarkadams4       if (ismpiaij) {
786972833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
787072833a62Smarkadams4         const PetscScalar *vals;
787172833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
787272833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
787372833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
787472833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
787572833a62Smarkadams4           for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
787659ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
787772833a62Smarkadams4             AA[k / bs] = 0;
787872833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
787972833a62Smarkadams4           }
788072833a62Smarkadams4           nc = ncols / bs;
788172833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7882e02fb3cdSMark Adams           if (index_size == 0) {
788372833a62Smarkadams4             for (int ii = 0; ii < bs; ii++) { // rows in block
788472833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
788572833a62Smarkadams4               for (int k = 0; k < ncols; k += bs) {
788672833a62Smarkadams4                 for (int jj = 0; jj < bs; jj++) { // cols in block
788759ee9f9fSPierre Jolivet                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
788872833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
788972833a62Smarkadams4                 }
789072833a62Smarkadams4               }
789172833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
789272833a62Smarkadams4             }
7893e02fb3cdSMark Adams           } else {                                       // use (index,index) value if provided
7894e02fb3cdSMark Adams             for (int iii = 0; iii < index_size; iii++) { // rows in block
7895e02fb3cdSMark Adams               int ii = index[iii];
7896e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
7897e02fb3cdSMark Adams               for (int k = 0; k < ncols; k += bs) {
7898e02fb3cdSMark Adams                 for (int jjj = 0; jjj < index_size; jjj++) { // cols in block
7899e02fb3cdSMark Adams                   int jj = index[jjj];
7900e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7901e02fb3cdSMark Adams                 }
7902e02fb3cdSMark Adams               }
7903e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7904e02fb3cdSMark Adams             }
7905e02fb3cdSMark Adams           }
790672833a62Smarkadams4           grow = Istart / bs + brow / bs;
790772833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, INSERT_VALUES));
790872833a62Smarkadams4         }
790972833a62Smarkadams4       }
791072833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
791172833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79122cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
791372833a62Smarkadams4     } else {
791472833a62Smarkadams4       const PetscScalar *vals;
791572833a62Smarkadams4       const PetscInt    *idx;
791672833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
791772833a62Smarkadams4     old_bs:
791872833a62Smarkadams4       /*
791972833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
792072833a62Smarkadams4        */
792172833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
792272833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
792372833a62Smarkadams4       if (isseqaij) {
792472833a62Smarkadams4         PetscInt max_d_nnz;
792572833a62Smarkadams4         /*
792672833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
792772833a62Smarkadams4          */
792872833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
792972833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
793072833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
793148a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
793272833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
793372833a62Smarkadams4       } else if (ismpiaij) {
793472833a62Smarkadams4         Mat             Daij, Oaij;
793572833a62Smarkadams4         const PetscInt *garray;
793672833a62Smarkadams4         PetscInt        max_d_nnz;
793772833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
793872833a62Smarkadams4         /*
793972833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
794072833a62Smarkadams4          */
794172833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
794272833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
794372833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
794448a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
794572833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
794672833a62Smarkadams4         /*
794772833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
794872833a62Smarkadams4          */
794972833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
795072833a62Smarkadams4           o_nnz[jj] = 0;
795172833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
795272833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
795372833a62Smarkadams4             o_nnz[jj] += ncols;
795472833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
795572833a62Smarkadams4           }
795672833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
795772833a62Smarkadams4         }
795872833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
795972833a62Smarkadams4       /* get scalar copy (norms) of matrix */
796072833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
796172833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
796272833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
796372833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
796472833a62Smarkadams4         PetscInt dest_row = Ii / bs;
796572833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
796672833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
796772833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
796872833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
796972833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
797072833a62Smarkadams4         }
797172833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
797272833a62Smarkadams4       }
797372833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
797472833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
797572833a62Smarkadams4     }
797672833a62Smarkadams4   } else {
79772d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
79782d776b49SBarry Smith     else {
79792d776b49SBarry Smith       Gmat = Amat;
79802d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
79812d776b49SBarry Smith     }
79829371c9d4SSatish Balay     if (isseqaij) {
79839371c9d4SSatish Balay       a = Gmat;
79849371c9d4SSatish Balay       b = NULL;
79859371c9d4SSatish Balay     } else {
798672833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
79879371c9d4SSatish Balay       a             = d->A;
79889371c9d4SSatish Balay       b             = d->B;
798972833a62Smarkadams4     }
79902d776b49SBarry Smith     if (filter >= 0 || scale) {
79912d776b49SBarry Smith       /* take absolute value of each entry */
799272833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
799372833a62Smarkadams4         MatInfo      info;
799472833a62Smarkadams4         PetscScalar *avals;
799572833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
799672833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
799772833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
799872833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
799972833a62Smarkadams4       }
800072833a62Smarkadams4     }
80012d776b49SBarry Smith   }
800272833a62Smarkadams4   if (symmetrize) {
8003b94d7dedSBarry Smith     PetscBool isset, issym;
8004b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
8005b94d7dedSBarry Smith     if (!isset || !issym) {
800672833a62Smarkadams4       Mat matTrans;
800772833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
80081fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
800972833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
801072833a62Smarkadams4     }
801172833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80122d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
801372833a62Smarkadams4   if (scale) {
801472833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
801572833a62Smarkadams4     Vec diag;
801672833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
801772833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
801872833a62Smarkadams4     PetscCall(VecReciprocal(diag));
801972833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
802072833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
802172833a62Smarkadams4     PetscCall(VecDestroy(&diag));
802272833a62Smarkadams4   }
802372833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80242d776b49SBarry Smith 
80252d776b49SBarry Smith   if (filter >= 0) {
80262ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80272ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80282d776b49SBarry Smith   }
802972833a62Smarkadams4   *a_Gmat = Gmat;
80303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
803172833a62Smarkadams4 }
803272833a62Smarkadams4 
803372833a62Smarkadams4 /*
803498921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
803598921bdaSJacob Faibussowitsch */
803698921bdaSJacob Faibussowitsch #include <petsc/private/fortranimpl.h>
803798921bdaSJacob Faibussowitsch 
803898921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80399566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80409566063dSJacob Faibussowitsch #undef PetscCall
80419371c9d4SSatish Balay #define PetscCall(...) \
80429371c9d4SSatish Balay   do { \
80435f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
804498921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
804598921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
804698921bdaSJacob Faibussowitsch       return; \
804798921bdaSJacob Faibussowitsch     } \
804898921bdaSJacob Faibussowitsch   } while (0)
804998921bdaSJacob Faibussowitsch 
805098921bdaSJacob Faibussowitsch #undef SETERRQ
80519371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80529371c9d4SSatish Balay   do { \
805398921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
805498921bdaSJacob Faibussowitsch     return; \
805598921bdaSJacob Faibussowitsch   } while (0)
805698921bdaSJacob Faibussowitsch 
805798921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
805898921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
805998921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
806098921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
806198921bdaSJacob Faibussowitsch #else
806298921bdaSJacob Faibussowitsch #endif
8063d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8064d71ae5a4SJacob Faibussowitsch {
806598921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
806698921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
806798921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
806898921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
806998921bdaSJacob Faibussowitsch   PetscScalar value;
807098921bdaSJacob Faibussowitsch 
807198921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
807298921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80735f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
807498921bdaSJacob Faibussowitsch   {
807598921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
807698921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
807798921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
807898921bdaSJacob Faibussowitsch 
807998921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
808098921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
808198921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
808298921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
808398921bdaSJacob Faibussowitsch     MatScalar  *aa;
8084f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
808598921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
808698921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
808798921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
808898921bdaSJacob Faibussowitsch     MatScalar  *ba;
808998921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
809098921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
809198921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
809298921bdaSJacob Faibussowitsch 
809398921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
809498921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
809598921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
809698921bdaSJacob Faibussowitsch 
809798921bdaSJacob Faibussowitsch     PetscFunctionBegin;
80989566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
80999566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
810098921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
810198921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
81026bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
810398921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
810498921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
810598921bdaSJacob Faibussowitsch         lastcol1 = -1;
810698921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
810798921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
810898921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
810998921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
811098921bdaSJacob Faibussowitsch         low1     = 0;
811198921bdaSJacob Faibussowitsch         high1    = nrow1;
811298921bdaSJacob Faibussowitsch         lastcol2 = -1;
811398921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
811498921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
811598921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
811698921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
811798921bdaSJacob Faibussowitsch         low2     = 0;
811898921bdaSJacob Faibussowitsch         high2    = nrow2;
811998921bdaSJacob Faibussowitsch 
812098921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
812198921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
812298921bdaSJacob Faibussowitsch           else value = v[i + j * m];
812398921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
812498921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
812598921bdaSJacob Faibussowitsch             col = in[j] - cstart;
812698921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
812798921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
812898921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
812963a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
813098921bdaSJacob Faibussowitsch           } else {
813198921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
813248a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
813398921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8134eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
813598921bdaSJacob Faibussowitsch               col--;
813698921bdaSJacob Faibussowitsch #else
813798921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
813898921bdaSJacob Faibussowitsch #endif
8139f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
81409566063dSJacob Faibussowitsch                 PetscCall(MatDisAssemble_MPIAIJ(mat));
814198921bdaSJacob Faibussowitsch                 col = in[j];
814298921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
814398921bdaSJacob Faibussowitsch                 B        = aij->B;
814498921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81459371c9d4SSatish Balay                 bimax    = b->imax;
81469371c9d4SSatish Balay                 bi       = b->i;
81479371c9d4SSatish Balay                 bilen    = b->ilen;
81489371c9d4SSatish Balay                 bj       = b->j;
814998921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
815098921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
815198921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
815298921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
815398921bdaSJacob Faibussowitsch                 low2     = 0;
815498921bdaSJacob Faibussowitsch                 high2    = nrow2;
815598921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
815698921bdaSJacob Faibussowitsch                 ba       = b->a;
815798921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
815898921bdaSJacob Faibussowitsch               }
815998921bdaSJacob Faibussowitsch             } else col = in[j];
816098921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
816198921bdaSJacob Faibussowitsch           }
816298921bdaSJacob Faibussowitsch         }
816398921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
816498921bdaSJacob Faibussowitsch         if (roworiented) {
81659566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
816698921bdaSJacob Faibussowitsch         } else {
81679566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
816898921bdaSJacob Faibussowitsch         }
816998921bdaSJacob Faibussowitsch       }
817098921bdaSJacob Faibussowitsch     }
81719566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81729566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
817398921bdaSJacob Faibussowitsch   }
817498921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
817598921bdaSJacob Faibussowitsch }
817672833a62Smarkadams4 
817798921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
817898921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
817998921bdaSJacob Faibussowitsch  * original definitions */
81809566063dSJacob Faibussowitsch #undef PetscCall
818198921bdaSJacob Faibussowitsch #undef SETERRQ
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