xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision ce78bad369055609e946c9d2c25ea67a45873e27)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */
10674b392bSAlexander #define TYPE AIJ
11674b392bSAlexander #define TYPE_AIJ
12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h"
13674b392bSAlexander #undef TYPE
14674b392bSAlexander #undef TYPE_AIJ
15674b392bSAlexander 
16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat)
1726cec326SBarry Smith {
1826cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1926cec326SBarry Smith 
2026cec326SBarry Smith   PetscFunctionBegin;
2126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
2226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
2326cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
2426cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
2526cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2826cec326SBarry Smith #else
2926cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
3026cec326SBarry Smith #endif
3126cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
3226cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
3326cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
3426cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
3526cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
36674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
37674b392bSAlexander }
38674b392bSAlexander 
39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat)
40674b392bSAlexander {
41674b392bSAlexander   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
42674b392bSAlexander   /* Save the nonzero states of the component matrices because those are what are used to determine
43674b392bSAlexander     the nonzero state of mat */
44674b392bSAlexander   PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate;
45674b392bSAlexander 
46674b392bSAlexander   PetscFunctionBegin;
47674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
48674b392bSAlexander   PetscCall(MatSetUp_MPI_Hash(mat));
49674b392bSAlexander   aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate;
50674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
51674b392bSAlexander }
52674b392bSAlexander 
53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
54674b392bSAlexander {
55674b392bSAlexander   PetscFunctionBegin;
56674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
5726cec326SBarry Smith 
5826cec326SBarry Smith   PetscCall(PetscFree(mat->data));
5926cec326SBarry Smith 
6026cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
6126cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
6226cec326SBarry Smith 
6326cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
6426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
69674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
7126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
7326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
7626cec326SBarry Smith #endif
7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
7926cec326SBarry Smith #endif
8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
8126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
8226cec326SBarry Smith #endif
8326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
8526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
8626cec326SBarry Smith #endif
8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
8826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
8926cec326SBarry Smith #endif
9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
9126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
9226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
9326cec326SBarry Smith #endif
9426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
9526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
9626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
9726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
9826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
9926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
10126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
10226cec326SBarry Smith #endif
10326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
10426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
10526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
10626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
10726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
10826cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
10926cec326SBarry Smith }
11026cec326SBarry Smith 
111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
112d71ae5a4SJacob Faibussowitsch {
1138a9c020eSBarry Smith   Mat B;
1148a9c020eSBarry Smith 
1158a9c020eSBarry Smith   PetscFunctionBegin;
1168a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
1178a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
1188a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
119501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
1203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1218a9c020eSBarry Smith }
1228a9c020eSBarry Smith 
123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
124d71ae5a4SJacob Faibussowitsch {
1258a9c020eSBarry Smith   Mat B;
1268a9c020eSBarry Smith 
1278a9c020eSBarry Smith   PetscFunctionBegin;
1288a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1298a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
130501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1328a9c020eSBarry Smith }
1338a9c020eSBarry Smith 
13401bebe75SBarry Smith /*MC
13501bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
13601bebe75SBarry Smith 
13711a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
13811a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
13911a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
14001bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14101bebe75SBarry Smith   the above preallocation routines for simplicity.
14201bebe75SBarry Smith 
14327430b45SBarry Smith    Options Database Key:
14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
14501bebe75SBarry Smith 
14611a5261eSBarry Smith   Developer Note:
1472ef1f0ffSBarry Smith   Level: beginner
1482ef1f0ffSBarry Smith 
14911a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
15001bebe75SBarry Smith    enough exist.
15101bebe75SBarry Smith 
1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
15301bebe75SBarry Smith M*/
15401bebe75SBarry Smith 
15501bebe75SBarry Smith /*MC
15601bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
15701bebe75SBarry Smith 
15811a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
15911a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
16011a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
16101bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
16201bebe75SBarry Smith   the above preallocation routines for simplicity.
16301bebe75SBarry Smith 
16427430b45SBarry Smith    Options Database Key:
16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
16601bebe75SBarry Smith 
16701bebe75SBarry Smith   Level: beginner
16801bebe75SBarry Smith 
1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
17001bebe75SBarry Smith M*/
17101bebe75SBarry Smith 
172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
173d71ae5a4SJacob Faibussowitsch {
174f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
175f74ef234SStefano Zampini 
176f74ef234SStefano Zampini   PetscFunctionBegin;
177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
178b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
179f74ef234SStefano Zampini #endif
1801baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1811baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1823120d049SRichard Tran Mills 
1833120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1843120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1853120d049SRichard Tran Mills    * to differ from the parent matrix. */
1861baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1871baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189f74ef234SStefano Zampini }
190f74ef234SStefano Zampini 
191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
192d71ae5a4SJacob Faibussowitsch {
19326bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
19426bda2c4Sstefano_zampini 
19526bda2c4Sstefano_zampini   PetscFunctionBegin;
19646533700Sstefano_zampini   if (mat->A) {
1979566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1989566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
19946533700Sstefano_zampini   }
2003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20126bda2c4Sstefano_zampini }
20226bda2c4Sstefano_zampini 
203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
204d71ae5a4SJacob Faibussowitsch {
20527d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
20627d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
20727d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
20827d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
209ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
21027d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
21127d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
21227d4218bSShri Abhyankar 
21327d4218bSShri Abhyankar   PetscFunctionBegin;
214f4259b30SLisandro Dalcin   *keptrows = NULL;
215ce496241SStefano Zampini 
21627d4218bSShri Abhyankar   ia = a->i;
21727d4218bSShri Abhyankar   ib = b->i;
2189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
22027d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22127d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22227d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22327d4218bSShri Abhyankar     if (!na && !nb) {
22427d4218bSShri Abhyankar       cnt++;
22527d4218bSShri Abhyankar       goto ok1;
22627d4218bSShri Abhyankar     }
227ce496241SStefano Zampini     aa = aav + ia[i];
22827d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
22927d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
23027d4218bSShri Abhyankar     }
2318e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23227d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23327d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
23427d4218bSShri Abhyankar     }
23527d4218bSShri Abhyankar     cnt++;
23627d4218bSShri Abhyankar   ok1:;
23727d4218bSShri Abhyankar   }
238462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
239ce496241SStefano Zampini   if (!n0rows) {
2409566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2419566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
243ce496241SStefano Zampini   }
2449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
24527d4218bSShri Abhyankar   cnt = 0;
24627d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
24727d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
24827d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
24927d4218bSShri Abhyankar     if (!na && !nb) continue;
250ce496241SStefano Zampini     aa = aav + ia[i];
25127d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
25227d4218bSShri Abhyankar       if (aa[j] != 0.0) {
25327d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
25427d4218bSShri Abhyankar         goto ok2;
25527d4218bSShri Abhyankar       }
25627d4218bSShri Abhyankar     }
2578e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
25827d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
25927d4218bSShri Abhyankar       if (bb[j] != 0.0) {
26027d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
26127d4218bSShri Abhyankar         goto ok2;
26227d4218bSShri Abhyankar       }
26327d4218bSShri Abhyankar     }
26427d4218bSShri Abhyankar   ok2:;
26527d4218bSShri Abhyankar   }
2669566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27027d4218bSShri Abhyankar }
27127d4218bSShri Abhyankar 
272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
273d71ae5a4SJacob Faibussowitsch {
27499e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
27594342113SStefano Zampini   PetscBool   cong;
27699e65526SBarry Smith 
27799e65526SBarry Smith   PetscFunctionBegin;
2789566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
27994342113SStefano Zampini   if (Y->assembled && cong) {
2809566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
28199e65526SBarry Smith   } else {
2829566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
28399e65526SBarry Smith   }
2843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28599e65526SBarry Smith }
28699e65526SBarry Smith 
287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
288d71ae5a4SJacob Faibussowitsch {
289f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
290f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
291f1f41ecbSJed Brown 
292f1f41ecbSJed Brown   PetscFunctionBegin;
2930298fd71SBarry Smith   *zrows = NULL;
2949566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2959566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
296f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2979566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
299f1f41ecbSJed Brown }
300f1f41ecbSJed Brown 
301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
302d71ae5a4SJacob Faibussowitsch {
3030716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
304a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
3050716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
3060716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
3070716a85fSBarry Smith   PetscReal         *work;
308ce496241SStefano Zampini   const PetscScalar *dummy;
3090716a85fSBarry Smith 
3100716a85fSBarry Smith   PetscFunctionBegin;
3119566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
3129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
3139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
3149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
3159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
3169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
317857cbf51SRichard Tran Mills   if (type == NORM_2) {
318ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
319ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
320857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
321ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
322ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
323857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
324ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
325ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
326857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
327ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
328ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
329857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
330ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
331ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
332857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
333857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
334e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3350716a85fSBarry Smith   } else {
336e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3370716a85fSBarry Smith   }
3389566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
339857cbf51SRichard Tran Mills   if (type == NORM_2) {
340a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
341857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
342a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3430716a85fSBarry Smith   }
3443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3450716a85fSBarry Smith }
3460716a85fSBarry Smith 
347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
348d71ae5a4SJacob Faibussowitsch {
349e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
350e52d2c62SBarry Smith   IS              sis, gis;
351e52d2c62SBarry Smith   const PetscInt *isis, *igis;
352e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
353e52d2c62SBarry Smith 
354e52d2c62SBarry Smith   PetscFunctionBegin;
3559566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3569566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3579566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3589566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3599566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3609566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
361e52d2c62SBarry Smith 
3629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3639566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3649566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
365e52d2c62SBarry Smith   n = ngis + nsis;
3669566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3679566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
368e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3699566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
370e52d2c62SBarry Smith 
3719566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3729566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3739566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3749566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
376e52d2c62SBarry Smith }
377e52d2c62SBarry Smith 
378dd6ea824SBarry Smith /*
3790f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3810f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
38372fa4726SStefano Zampini has an order N integer array but is fast to access.
3849e25ed09SBarry Smith */
385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
386d71ae5a4SJacob Faibussowitsch {
38744a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
388d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
389dbb450caSBarry Smith 
3903a40ed3dSBarry Smith   PetscFunctionBegin;
39108401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
393eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
394c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
395b1fc9764SSatish Balay #else
3969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
397905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
398b1fc9764SSatish Balay #endif
3993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4009e25ed09SBarry Smith }
4019e25ed09SBarry Smith 
402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
403a8f51744SPierre Jolivet   do { \
404db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
405db4deed7SKarl Rupp     else high1 = nrow1; \
406fd3458f5SBarry Smith     lastcol1 = col; \
407fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
408fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
409fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
410fd3458f5SBarry Smith       else low1 = t; \
411ba4e3ef2SSatish Balay     } \
412fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
413fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
414fd3458f5SBarry Smith       if (rp1[_i] == col) { \
4150c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4160c0d7e18SFande Kong           ap1[_i] += value; \
4170c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
4180c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4199371c9d4SSatish Balay         } else ap1[_i] = value; \
42030770e4dSSatish Balay         goto a_noinsert; \
4210520107fSSatish Balay       } \
4220520107fSSatish Balay     } \
4239371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4249371c9d4SSatish Balay       low1  = 0; \
4259371c9d4SSatish Balay       high1 = nrow1; \
4269371c9d4SSatish Balay       goto a_noinsert; \
4279371c9d4SSatish Balay     } \
4289371c9d4SSatish Balay     if (nonew == 1) { \
4299371c9d4SSatish Balay       low1  = 0; \
4309371c9d4SSatish Balay       high1 = nrow1; \
4319371c9d4SSatish Balay       goto a_noinsert; \
4329371c9d4SSatish Balay     } \
43308401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
434fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4359371c9d4SSatish Balay     N = nrow1++ - 1; \
4369371c9d4SSatish Balay     a->nz++; \
4379371c9d4SSatish Balay     high1++; \
4380520107fSSatish Balay     /* shift up all the later entries in this row */ \
4399566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4409566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
441fd3458f5SBarry Smith     rp1[_i] = col; \
442fd3458f5SBarry Smith     ap1[_i] = value; \
44330770e4dSSatish Balay   a_noinsert:; \
444fd3458f5SBarry Smith     ailen[row] = nrow1; \
445a8f51744SPierre Jolivet   } while (0)
4460a198c4cSBarry Smith 
447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
448a8f51744SPierre Jolivet   do { \
449db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
450db4deed7SKarl Rupp     else high2 = nrow2; \
451fd3458f5SBarry Smith     lastcol2 = col; \
452fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
453fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
454fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
455fd3458f5SBarry Smith       else low2 = t; \
456ba4e3ef2SSatish Balay     } \
457fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
458fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
459fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4600c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4610c0d7e18SFande Kong           ap2[_i] += value; \
4620c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4639371c9d4SSatish Balay         } else ap2[_i] = value; \
46430770e4dSSatish Balay         goto b_noinsert; \
46530770e4dSSatish Balay       } \
46630770e4dSSatish Balay     } \
4679371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4689371c9d4SSatish Balay       low2  = 0; \
4699371c9d4SSatish Balay       high2 = nrow2; \
4709371c9d4SSatish Balay       goto b_noinsert; \
4719371c9d4SSatish Balay     } \
4729371c9d4SSatish Balay     if (nonew == 1) { \
4739371c9d4SSatish Balay       low2  = 0; \
4749371c9d4SSatish Balay       high2 = nrow2; \
4759371c9d4SSatish Balay       goto b_noinsert; \
4769371c9d4SSatish Balay     } \
47708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
478fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4799371c9d4SSatish Balay     N = nrow2++ - 1; \
4809371c9d4SSatish Balay     b->nz++; \
4819371c9d4SSatish Balay     high2++; \
48230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4839566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4849566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
485fd3458f5SBarry Smith     rp2[_i] = col; \
486fd3458f5SBarry Smith     ap2[_i] = value; \
48730770e4dSSatish Balay   b_noinsert:; \
488fd3458f5SBarry Smith     bilen[row] = nrow2; \
489a8f51744SPierre Jolivet   } while (0)
49030770e4dSSatish Balay 
491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
492d71ae5a4SJacob Faibussowitsch {
4932fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4942fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4952fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
496fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4972fd7e33dSBarry Smith 
4982fd7e33dSBarry Smith   PetscFunctionBegin;
4992fd7e33dSBarry Smith   /* code only works for square matrices A */
5002fd7e33dSBarry Smith 
5012fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
5029566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
5032fd7e33dSBarry Smith   row = row - diag;
5042fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
5052fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
5062fd7e33dSBarry Smith   }
507fff043a9SJunchao Zhang   if (l) {
5089566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5099566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
5109566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
511fff043a9SJunchao Zhang   }
5122fd7e33dSBarry Smith 
5132fd7e33dSBarry Smith   /* diagonal part */
514fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
5159566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
51657508eceSPierre Jolivet     PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row]));
5179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
518fff043a9SJunchao Zhang   }
5192fd7e33dSBarry Smith 
5202fd7e33dSBarry Smith   /* right of diagonal part */
521fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5229566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5239566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
525fff043a9SJunchao Zhang   }
5263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5272fd7e33dSBarry Smith }
5282fd7e33dSBarry Smith 
529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
530d71ae5a4SJacob Faibussowitsch {
53144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
532071fcb05SBarry Smith   PetscScalar value = 0.0;
533d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
534d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
535ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5368a729477SBarry Smith 
5370520107fSSatish Balay   /* Some Variables required in the macro */
5384ee7247eSSatish Balay   Mat         A     = aij->A;
5394ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
54057809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
541ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
54230770e4dSSatish Balay   Mat         B                 = aij->B;
54330770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
544d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
545ce496241SStefano Zampini   MatScalar  *aa, *ba;
546fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5478d76821aSHong Zhang   PetscInt    nonew;
548a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5494ee7247eSSatish Balay 
5503a40ed3dSBarry Smith   PetscFunctionBegin;
5519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5538a729477SBarry Smith   for (i = 0; i < m; i++) {
5545ef9f2a5SBarry Smith     if (im[i] < 0) continue;
55508401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5564b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5574b0e389bSBarry Smith       row      = im[i] - rstart;
558fd3458f5SBarry Smith       lastcol1 = -1;
5598e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5608e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
561fd3458f5SBarry Smith       rmax1    = aimax[row];
562fd3458f5SBarry Smith       nrow1    = ailen[row];
563fd3458f5SBarry Smith       low1     = 0;
564fd3458f5SBarry Smith       high1    = nrow1;
565fd3458f5SBarry Smith       lastcol2 = -1;
5668e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5678e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
568fd3458f5SBarry Smith       rmax2    = bimax[row];
569d498b1e9SBarry Smith       nrow2    = bilen[row];
570fd3458f5SBarry Smith       low2     = 0;
571fd3458f5SBarry Smith       high2    = nrow2;
572fd3458f5SBarry Smith 
5731eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
574071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
575c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
576fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
577fd3458f5SBarry Smith           col   = in[j] - cstart;
5788d76821aSHong Zhang           nonew = a->nonew;
579d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
580f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
581f7d195e4SLawrence Mitchell           continue;
582f7d195e4SLawrence Mitchell         } else {
583f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
584227d817aSBarry Smith           if (mat->was_assembled) {
58548a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
587eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
588fa46199cSSatish Balay             col--;
589b1fc9764SSatish Balay #else
590905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
591b1fc9764SSatish Balay #endif
592f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
593eb14dd14SAlex Lindsay               PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));  /* Change aij->B from reduced/local format to expanded/global format */
5944b0e389bSBarry Smith               col = in[j];
5959bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
596f9508a3cSSatish Balay               B     = aij->B;
597f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5989371c9d4SSatish Balay               bimax = b->imax;
5999371c9d4SSatish Balay               bi    = b->i;
6009371c9d4SSatish Balay               bilen = b->ilen;
6019371c9d4SSatish Balay               bj    = b->j;
6029371c9d4SSatish Balay               ba    = b->a;
603cff58d65SJunchao Zhang               rp2   = PetscSafePointerPlusOffset(bj, bi[row]);
604cff58d65SJunchao Zhang               ap2   = PetscSafePointerPlusOffset(ba, bi[row]);
605d498b1e9SBarry Smith               rmax2 = bimax[row];
606d498b1e9SBarry Smith               nrow2 = bilen[row];
607d498b1e9SBarry Smith               low2  = 0;
608d498b1e9SBarry Smith               high2 = nrow2;
609d0f46423SBarry Smith               bm    = aij->B->rmap->n;
610f9508a3cSSatish Balay               ba    = b->a;
611d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
612f4f49eeaSPierre Jolivet               if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) {
6139566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
61498921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
6150587a0fcSBarry Smith             }
616c48de900SBarry Smith           } else col = in[j];
6178d76821aSHong Zhang           nonew = b->nonew;
618d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
6191eb62cbbSBarry Smith         }
6201eb62cbbSBarry Smith       }
6215ef9f2a5SBarry Smith     } else {
62228b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
62390f02eecSBarry Smith       if (!aij->donotstash) {
6245080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
625d36fbae8SSatish Balay         if (roworiented) {
6268e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
627d36fbae8SSatish Balay         } else {
6288e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6294b0e389bSBarry Smith         }
6301eb62cbbSBarry Smith       }
6318a729477SBarry Smith     }
63290f02eecSBarry Smith   }
6335519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6368a729477SBarry Smith }
6378a729477SBarry Smith 
6382b08fdbeSandi selinger /*
639904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6402b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
641904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6422b08fdbeSandi selinger */
643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
644d71ae5a4SJacob Faibussowitsch {
645904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
646904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6474cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
648904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
649904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
650904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
651904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
652904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6536dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
654904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
655904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
656904d1e70Sandi selinger 
657904d1e70Sandi selinger   PetscFunctionBegin;
658904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
659904d1e70Sandi selinger   for (j = 0; j < am; j++) {
660904d1e70Sandi selinger     dnz = onz = 0;
661904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6626dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
663904d1e70Sandi selinger       /* If column is in the diagonal */
664904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
665904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
666904d1e70Sandi selinger         dnz++;
667904d1e70Sandi selinger       } else { /* off-diagonal entries */
668904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
669904d1e70Sandi selinger         onz++;
670904d1e70Sandi selinger       }
671904d1e70Sandi selinger     }
672904d1e70Sandi selinger     ailen[j] = dnz;
673904d1e70Sandi selinger     bilen[j] = onz;
674904d1e70Sandi selinger   }
6753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
676904d1e70Sandi selinger }
677904d1e70Sandi selinger 
678904d1e70Sandi selinger /*
679904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
680904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6811de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6821de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6831de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
684904d1e70Sandi selinger */
685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
686d71ae5a4SJacob Faibussowitsch {
6873a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6883a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6894cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
690f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6913a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6923a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6933a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6943a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6953a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6966dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6971de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
698904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
699904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
7003a063d27Sandi selinger 
7013a063d27Sandi selinger   PetscFunctionBegin;
7023a063d27Sandi selinger   /* Iterate over all rows of the matrix */
7033a063d27Sandi selinger   for (j = 0; j < am; j++) {
704904d1e70Sandi selinger     dnz_row = onz_row = 0;
705904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
706904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
707e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
708e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
709ae8e66a0Sandi selinger       /* If column is in the diagonal */
7103a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
711904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
712904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
713904d1e70Sandi selinger         dnz_row++;
714ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
715904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
716904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
717904d1e70Sandi selinger         onz_row++;
7183a063d27Sandi selinger       }
7193a063d27Sandi selinger     }
720904d1e70Sandi selinger     ailen[j] = dnz_row;
721904d1e70Sandi selinger     bilen[j] = onz_row;
7223a063d27Sandi selinger   }
7233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7243a063d27Sandi selinger }
7253a063d27Sandi selinger 
726ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
727d71ae5a4SJacob Faibussowitsch {
728b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
729d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
730d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
731b49de8d1SLois Curfman McInnes 
7323a40ed3dSBarry Smith   PetscFunctionBegin;
733b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
73454c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
73554c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
73685835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
737b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
738b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
73954c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
74054c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
741b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
742b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7439566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
744fa852ad4SSatish Balay       } else {
74548a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
746aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
747eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
748fa46199cSSatish Balay         col--;
749b1fc9764SSatish Balay #else
750905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
751b1fc9764SSatish Balay #endif
752e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
75348a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
754b49de8d1SLois Curfman McInnes       }
755b49de8d1SLois Curfman McInnes     }
756b49de8d1SLois Curfman McInnes   }
7573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
758b49de8d1SLois Curfman McInnes }
759bc5ccf88SSatish Balay 
760ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
761d71ae5a4SJacob Faibussowitsch {
762bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
763b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
764bc5ccf88SSatish Balay 
765bc5ccf88SSatish Balay   PetscFunctionBegin;
7663ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
767bc5ccf88SSatish Balay 
7689566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7699566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7709566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
772bc5ccf88SSatish Balay }
773bc5ccf88SSatish Balay 
774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
775d71ae5a4SJacob Faibussowitsch {
776bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
777b1d57f15SBarry Smith   PetscMPIInt  n;
778b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
779e44c0bd4SBarry Smith   PetscInt    *row, *col;
780ace3abfcSBarry Smith   PetscBool    other_disassembled;
78187828ca2SBarry Smith   PetscScalar *val;
782bc5ccf88SSatish Balay 
78391c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7846e111a19SKarl Rupp 
785bc5ccf88SSatish Balay   PetscFunctionBegin;
7864cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
787a2d1c673SSatish Balay     while (1) {
7889566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
789a2d1c673SSatish Balay       if (!flg) break;
790a2d1c673SSatish Balay 
791bc5ccf88SSatish Balay       for (i = 0; i < n;) {
792bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7932205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7942205254eSKarl Rupp           if (row[j] != rstart) break;
7952205254eSKarl Rupp         }
796bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
797bc5ccf88SSatish Balay         else ncols = n - i;
798bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7999566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
800bc5ccf88SSatish Balay         i = j;
801bc5ccf88SSatish Balay       }
802bc5ccf88SSatish Balay     }
8039566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
804bc5ccf88SSatish Balay   }
8058c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
806c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
8079ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
8089ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
8099566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
8109566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
8119ecce9b1SRichard Tran Mills   }
812e2cf4d64SStefano Zampini #endif
8139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
8149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
815bc5ccf88SSatish Balay 
816bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
817071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
818bc5ccf88SSatish Balay   /*
819bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
820bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
821bc5ccf88SSatish Balay   */
822bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
823462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
82435cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
825eb14dd14SAlex Lindsay       PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
826ad59fb31SSatish Balay     }
827ad59fb31SSatish Balay   }
82848a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8299566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8308c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
831c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
832e2cf4d64SStefano Zampini #endif
8339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
835bc5ccf88SSatish Balay 
8369566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8372205254eSKarl Rupp 
838f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
839a30b2313SHong Zhang 
8409566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
841e56f5c9eSBarry Smith 
8424f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
843f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
844e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
845462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
846e56f5c9eSBarry Smith   }
8478c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
848c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
849e2cf4d64SStefano Zampini #endif
8503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
851bc5ccf88SSatish Balay }
852bc5ccf88SSatish Balay 
853ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
854d71ae5a4SJacob Faibussowitsch {
85544a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8563a40ed3dSBarry Smith 
8573a40ed3dSBarry Smith   PetscFunctionBegin;
8589566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8599566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8611eb62cbbSBarry Smith }
8621eb62cbbSBarry Smith 
863ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
864d71ae5a4SJacob Faibussowitsch {
8651b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8661b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8676e520ac8SStefano Zampini   PetscInt    r, len;
8689939a2d1SBarry Smith   PetscBool   cong;
8691eb62cbbSBarry Smith 
8703a40ed3dSBarry Smith   PetscFunctionBegin;
8716e520ac8SStefano Zampini   /* get locally owned rows */
8729566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8739566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
874dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
87597b48c8fSBarry Smith   if (x && b) {
8761b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8771b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8781b1dd7adSMatthew G. Knepley 
87928b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8809566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8819566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8821b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8839566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8849566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
88597b48c8fSBarry Smith   }
886a92ad425SStefano Zampini 
887a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8889566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8899566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
890a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
891a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
892a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
893a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
894a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
895a92ad425SStefano Zampini 
896a92ad425SStefano Zampini     nnwA = aijA->nonew;
897a92ad425SStefano Zampini     nnwB = aijB->nonew;
898a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
899a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
900a92ad425SStefano Zampini     if (!nnzA) {
9019566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
902a92ad425SStefano Zampini       aijA->nonew = 0;
903a92ad425SStefano Zampini     }
904a92ad425SStefano Zampini     if (!nnzB) {
9059566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
906a92ad425SStefano Zampini       aijB->nonew = 0;
907a92ad425SStefano Zampini     }
908a92ad425SStefano Zampini     /* Must zero here before the next loop */
9099566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9109566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9111b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
9121b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
913a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
9149566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
915e2d53e46SBarry Smith     }
916a92ad425SStefano Zampini     aijA->nonew = nnwA;
917a92ad425SStefano Zampini     aijB->nonew = nnwB;
9186eb55b6aSBarry Smith   } else {
9199566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9209566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9216eb55b6aSBarry Smith   }
9229566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9254f9cfa9eSBarry Smith 
9269939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
927f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9289939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
929462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9309939a2d1SBarry Smith   }
9313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9321eb62cbbSBarry Smith }
9331eb62cbbSBarry Smith 
934ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
935d71ae5a4SJacob Faibussowitsch {
9369c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9376497c311SBarry Smith   PetscInt           n = A->rmap->n;
938131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
93954bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
940131c27b5Sprj-   PetscMPIInt        p = 0;
94154bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
94254bd4135SMatthew G. Knepley   PetscSF            sf;
9439c7c4993SBarry Smith   const PetscScalar *xx;
944fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
945564f14d6SBarry Smith   Vec                xmask, lmask;
946564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
947564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
948564f14d6SBarry Smith   PetscScalar       *aa;
9499c7c4993SBarry Smith 
9509c7c4993SBarry Smith   PetscFunctionBegin;
95154bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
95354bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
95554bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
95654bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
957aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9585ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9599566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9605ba17502SJed Brown     }
96154bd4135SMatthew G. Knepley     rrows[r].rank  = p;
96254bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9639c7c4993SBarry Smith   }
9649566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9659566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
96654bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9679566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9689566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9699566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
97054bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9719371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9729371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
973564f14d6SBarry Smith   /* zero diagonal part of matrix */
9749566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9754cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9769566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9779566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9789566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
97954bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9809566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9819566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9829566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9839566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
984a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
985a92ad425SStefano Zampini     PetscBool cong;
986a92ad425SStefano Zampini 
9879566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
98828b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9899566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9909566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9919566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9929566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
993377aa5a1SBarry Smith   }
9949566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9954cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
997564f14d6SBarry Smith   ii = aij->i;
9988e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
999564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
1000564f14d6SBarry Smith   if (aij->compressedrow.use) {
1001564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
1002564f14d6SBarry Smith     ii   = aij->compressedrow.i;
1003564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
1004564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1005564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1006564f14d6SBarry Smith       aj = aij->j + ii[i];
1007fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1008564f14d6SBarry Smith 
1009564f14d6SBarry Smith       for (j = 0; j < n; j++) {
101025266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1011377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
1012564f14d6SBarry Smith           *aa = 0.0;
1013564f14d6SBarry Smith         }
1014564f14d6SBarry Smith         aa++;
1015564f14d6SBarry Smith         aj++;
1016564f14d6SBarry Smith       }
1017564f14d6SBarry Smith       ridx++;
1018564f14d6SBarry Smith     }
1019564f14d6SBarry Smith   } else { /* do not use compressed row format */
1020564f14d6SBarry Smith     m = l->B->rmap->n;
1021564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1022564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1023564f14d6SBarry Smith       aj = aij->j + ii[i];
1024fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1025564f14d6SBarry Smith       for (j = 0; j < n; j++) {
102625266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1027377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1028564f14d6SBarry Smith           *aa = 0.0;
1029564f14d6SBarry Smith         }
1030564f14d6SBarry Smith         aa++;
1031564f14d6SBarry Smith         aj++;
1032564f14d6SBarry Smith       }
1033564f14d6SBarry Smith     }
1034564f14d6SBarry Smith   }
1035a92ad425SStefano Zampini   if (x && b) {
10369566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10379566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1038377aa5a1SBarry Smith   }
10399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10419566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10429566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10434f9cfa9eSBarry Smith 
10444f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1045f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10464f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1047462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10484f9cfa9eSBarry Smith   }
10493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10509c7c4993SBarry Smith }
10519c7c4993SBarry Smith 
1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1053d71ae5a4SJacob Faibussowitsch {
1054416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1055b1d57f15SBarry Smith   PetscInt    nt;
105619b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1057416022c9SBarry Smith 
10583a40ed3dSBarry Smith   PetscFunctionBegin;
10599566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
106008401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10619566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1062296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10639566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1064296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10661eb62cbbSBarry Smith }
10671eb62cbbSBarry Smith 
1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1069d71ae5a4SJacob Faibussowitsch {
1070bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1071bd0c2dcbSBarry Smith 
1072bd0c2dcbSBarry Smith   PetscFunctionBegin;
10739566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1075bd0c2dcbSBarry Smith }
1076bd0c2dcbSBarry Smith 
1077ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1078d71ae5a4SJacob Faibussowitsch {
1079416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
108001ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10813a40ed3dSBarry Smith 
10823a40ed3dSBarry Smith   PetscFunctionBegin;
10839566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10849566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10859566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10869566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1088da3a660dSBarry Smith }
1089da3a660dSBarry Smith 
1090ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1091d71ae5a4SJacob Faibussowitsch {
1092416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1093da3a660dSBarry Smith 
10943a40ed3dSBarry Smith   PetscFunctionBegin;
1095da3a660dSBarry Smith   /* do nondiagonal part */
10969566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1097da3a660dSBarry Smith   /* do local part */
10989566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10999613dc34SJunchao Zhang   /* add partial results together */
11009566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11019566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1103da3a660dSBarry Smith }
1104da3a660dSBarry Smith 
1105ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1106d71ae5a4SJacob Faibussowitsch {
11074f423910Svictorle   MPI_Comm    comm;
1108ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1109ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1110cd0d46ebSvictorle   IS          Me, Notme;
1111b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
111254d735aeSStefano Zampini   PetscBool   lf;
1113b1d57f15SBarry Smith   PetscMPIInt size;
1114cd0d46ebSvictorle 
1115cd0d46ebSvictorle   PetscFunctionBegin;
111642e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
11179566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
1118462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
11193ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11209566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11223ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
112342e5f5b4Svictorle 
11247dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11259566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11269566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1128cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1129cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11309566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11319566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11329566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
113366501d38Svictorle   Aoff = Aoffs[0];
11349566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
113566501d38Svictorle   Boff = Boffs[0];
11369566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11379566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11389566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11399566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11409566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11419566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1143cd0d46ebSvictorle }
1144cd0d46ebSvictorle 
1145ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1146d71ae5a4SJacob Faibussowitsch {
1147416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1148da3a660dSBarry Smith 
11493a40ed3dSBarry Smith   PetscFunctionBegin;
1150da3a660dSBarry Smith   /* do nondiagonal part */
11519566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1152da3a660dSBarry Smith   /* do local part */
11539566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11549613dc34SJunchao Zhang   /* add partial results together */
11559566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11569566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1158da3a660dSBarry Smith }
1159da3a660dSBarry Smith 
11601eb62cbbSBarry Smith /*
11611eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11621eb62cbbSBarry Smith    diagonal block
11631eb62cbbSBarry Smith */
1164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1165d71ae5a4SJacob Faibussowitsch {
1166416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11673a40ed3dSBarry Smith 
11683a40ed3dSBarry Smith   PetscFunctionBegin;
116908401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1170aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11719566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11731eb62cbbSBarry Smith }
11741eb62cbbSBarry Smith 
1175ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1176d71ae5a4SJacob Faibussowitsch {
1177052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11783a40ed3dSBarry Smith 
11793a40ed3dSBarry Smith   PetscFunctionBegin;
11809566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11819566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1183052efed2SBarry Smith }
1184052efed2SBarry Smith 
1185ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1186d71ae5a4SJacob Faibussowitsch {
11878e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11888e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11898e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11903ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11912e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
119217a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
119317a3732bSBarry Smith   PetscInt64         nz, hnz;
11943ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11953ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11963ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
119717a3732bSBarry Smith   PetscMPIInt        rank;
11988e2fed03SBarry Smith 
11998e2fed03SBarry Smith   PetscFunctionBegin;
12009566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
12013ea6fe3dSLisandro Dalcin 
12023ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
12033ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
12043ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
12053ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
12063ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
12078e2fed03SBarry Smith   nz = A->nz + B->nz;
12083ea6fe3dSLisandro Dalcin 
12093ea6fe3dSLisandro Dalcin   /* write matrix header */
12100700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
12119371c9d4SSatish Balay   header[1] = M;
12129371c9d4SSatish Balay   header[2] = N;
121317a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
121417a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
1215835f2295SStefano Zampini   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
12169566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12178e2fed03SBarry Smith 
12183ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12203ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12219566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12229566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12238e2fed03SBarry Smith 
12243ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12263ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12273ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12283ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12293ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12308e2fed03SBarry Smith     }
12319371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12329371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12338e2fed03SBarry Smith   }
123417a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12359566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12369566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12378e2fed03SBarry Smith 
12383ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12423ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12433ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12443ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12452e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12468e2fed03SBarry Smith     }
12479371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12489371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12498e2fed03SBarry Smith   }
12509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
125217a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12539566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12549566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12558e2fed03SBarry Smith 
12563ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12579566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12598e2fed03SBarry Smith }
12608e2fed03SBarry Smith 
12619804daf3SBarry Smith #include <petscdraw.h>
1262ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1263d71ae5a4SJacob Faibussowitsch {
126444a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
126532dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1266ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1267b0a32e0cSBarry Smith   PetscViewer       sviewer;
1268f3ef73ceSBarry Smith   PetscViewerFormat format;
1269416022c9SBarry Smith 
12703a40ed3dSBarry Smith   PetscFunctionBegin;
12719566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12729566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12739566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
127432077d6dSBarry Smith   if (iascii) {
12759566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1276ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
12771690c2aeSBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12789566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12799566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1280835f2295SStefano Zampini       for (i = 0; i < size; i++) {
1281ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1282ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1283ef5fdb51SBarry Smith         navg += nz[i];
1284ef5fdb51SBarry Smith       }
12859566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1286ef5fdb51SBarry Smith       navg = navg / size;
12879566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12883ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1289ef5fdb51SBarry Smith     }
12909566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1291456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12924e220ebcSLois Curfman McInnes       MatInfo   info;
12936335e310SSatish Balay       PetscInt *inodes = NULL;
1294923f20ffSKris Buschelman 
12959566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12969566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12979566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12989566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1299923f20ffSKris Buschelman       if (!inodes) {
13009371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
1301835f2295SStefano Zampini                                                      info.memory));
13026831982aSBarry Smith       } else {
1303835f2295SStefano Zampini         PetscCall(
1304835f2295SStefano Zampini           PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory));
13056831982aSBarry Smith       }
13069566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
13079566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13089566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
13099566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13109566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
13119566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
13129566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
13139566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
13143ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1315fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1316923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13179566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1318923f20ffSKris Buschelman       if (inodes) {
13199566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1320d38fa0fbSBarry Smith       } else {
13219566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1322d38fa0fbSBarry Smith       }
13233ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13244aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13253ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
132608480c60SBarry Smith     }
13278e2fed03SBarry Smith   } else if (isbinary) {
13288e2fed03SBarry Smith     if (size == 1) {
13299566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13309566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13318e2fed03SBarry Smith     } else {
13329566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13338e2fed03SBarry Smith     }
13343ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
133571e56450SStefano Zampini   } else if (iascii && size == 1) {
13369566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13379566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13383ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13390f5bd95cSBarry Smith   } else if (isdraw) {
1340b0a32e0cSBarry Smith     PetscDraw draw;
1341ace3abfcSBarry Smith     PetscBool isnull;
13429566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13439566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13443ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
134519bcc07fSBarry Smith   }
134619bcc07fSBarry Smith 
134771e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
134871e56450SStefano Zampini     Mat A = NULL, Av;
134971e56450SStefano Zampini     IS  isrow, iscol;
13502ee70a88SLois Curfman McInnes 
13519566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13529566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13539566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13549566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
135571e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
135671e56450SStefano Zampini     /*
135771e56450SStefano Zampini     Mat *AA, A = NULL, Av;
135871e56450SStefano Zampini     IS  isrow,iscol;
135971e56450SStefano Zampini 
13609566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13619566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13629566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1363dd400576SPatrick Sanan     if (rank == 0) {
13649566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
136571e56450SStefano Zampini        A    = AA[0];
136671e56450SStefano Zampini        Av   = AA[0];
136795373324SBarry Smith     }
13689566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
136971e56450SStefano Zampini */
13709566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13719566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
137255843e3eSBarry Smith     /*
137355843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1374b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
137555843e3eSBarry Smith     */
13769566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1377dd400576SPatrick Sanan     if (rank == 0) {
137848a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13799566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
138095373324SBarry Smith     }
13819566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13829566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
138395373324SBarry Smith   }
13843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13851eb62cbbSBarry Smith }
13861eb62cbbSBarry Smith 
1387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1388d71ae5a4SJacob Faibussowitsch {
1389ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1390416022c9SBarry Smith 
13913a40ed3dSBarry Smith   PetscFunctionBegin;
13929566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13939566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13949566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13959566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
139648a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1398416022c9SBarry Smith }
1399416022c9SBarry Smith 
1400ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1401d71ae5a4SJacob Faibussowitsch {
140244a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1403f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1404ace3abfcSBarry Smith   PetscBool   hasop;
14058a729477SBarry Smith 
14063a40ed3dSBarry Smith   PetscFunctionBegin;
1407a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
14089566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14093ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1410a2b30743SBarry Smith   }
1411a2b30743SBarry Smith 
141248a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
14134e980039SJed Brown 
1414c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1415da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14169566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14172798e883SHong Zhang       its--;
1418da3a660dSBarry Smith     }
14192798e883SHong Zhang 
14202798e883SHong Zhang     while (its--) {
14219566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14229566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14232798e883SHong Zhang 
1424c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14259566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14269566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14272798e883SHong Zhang 
1428c14dc6b6SHong Zhang       /* local sweep */
14299566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14302798e883SHong Zhang     }
14313a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1432da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14339566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14342798e883SHong Zhang       its--;
1435da3a660dSBarry Smith     }
14362798e883SHong Zhang     while (its--) {
14379566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14389566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14392798e883SHong Zhang 
1440c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14419566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14429566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1443c14dc6b6SHong Zhang 
1444c14dc6b6SHong Zhang       /* local sweep */
14459566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14462798e883SHong Zhang     }
14473a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1448da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14499566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14502798e883SHong Zhang       its--;
1451da3a660dSBarry Smith     }
14522798e883SHong Zhang     while (its--) {
14539566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14549566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14552798e883SHong Zhang 
1456c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14579566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14589566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14592798e883SHong Zhang 
1460c14dc6b6SHong Zhang       /* local sweep */
14619566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14622798e883SHong Zhang     }
1463a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1464a7420bb7SBarry Smith     Vec xx1;
1465a7420bb7SBarry Smith 
14669566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14679566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1468a7420bb7SBarry Smith 
14699566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14709566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1471a7420bb7SBarry Smith     if (!mat->diag) {
14729566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14739566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1474a7420bb7SBarry Smith     }
14759566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1476bd0c2dcbSBarry Smith     if (hasop) {
14779566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1478bd0c2dcbSBarry Smith     } else {
14799566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1480bd0c2dcbSBarry Smith     }
14819566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1482887ee2caSBarry Smith 
14839566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1484a7420bb7SBarry Smith 
1485a7420bb7SBarry Smith     /* local sweep */
14869566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14879566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14889566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1489ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1490c14dc6b6SHong Zhang 
14919566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1492a0808db4SHong Zhang 
14937b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14958a729477SBarry Smith }
1496a66be287SLois Curfman McInnes 
1497ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1498d71ae5a4SJacob Faibussowitsch {
149972e6a0cfSJed Brown   Mat             aA, aB, Aperm;
150072e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
150172e6a0cfSJed Brown   PetscScalar    *aa, *ba;
150272e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
150372e6a0cfSJed Brown   PetscSF         rowsf, sf;
15040298fd71SBarry Smith   IS              parcolp = NULL;
150572e6a0cfSJed Brown   PetscBool       done;
150642e855d1Svictor 
150742e855d1Svictor   PetscFunctionBegin;
15089566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
15099566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
15109566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
15119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
151272e6a0cfSJed Brown 
151372e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
15149566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
15159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
15169566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
151772e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15199566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
152072e6a0cfSJed Brown 
152172e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15249566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
152572e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15269566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15279566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15289566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152972e6a0cfSJed Brown 
15309566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15319566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15329566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
153372e6a0cfSJed Brown 
153472e6a0cfSJed Brown   /* Find out where my gcols should go */
15359566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15379566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15389566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15399566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15409566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15419566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15429566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
154372e6a0cfSJed Brown 
15449566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15459566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15469566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
154772e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1548131c27b5Sprj-     PetscInt    row = rdest[i];
1549131c27b5Sprj-     PetscMPIInt rowner;
15509566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
155172e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1552131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1553131c27b5Sprj-       PetscMPIInt cowner;
15549566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
155572e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155672e6a0cfSJed Brown       else onnz[i]++;
155772e6a0cfSJed Brown     }
155872e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1559131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1560131c27b5Sprj-       PetscMPIInt cowner;
15619566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
156272e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
156372e6a0cfSJed Brown       else onnz[i]++;
156472e6a0cfSJed Brown     }
156572e6a0cfSJed Brown   }
15669566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15679566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15689566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15699566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15709566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
157172e6a0cfSJed Brown 
15729566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15739566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15749566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
157572e6a0cfSJed Brown   for (i = 0; i < m; i++) {
157672e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1577970468b0SJed Brown     PetscInt  j0, rowlen;
157872e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1579970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1580970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15819566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1582970468b0SJed Brown     }
158372e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1584970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1585970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15869566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1587970468b0SJed Brown     }
158872e6a0cfSJed Brown   }
15899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15919566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15929566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15959566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15969566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15979566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15989566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
159972e6a0cfSJed Brown   *B = Aperm;
16003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
160142e855d1Svictor }
160242e855d1Svictor 
1603ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1604d71ae5a4SJacob Faibussowitsch {
1605c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1606c5e4d11fSDmitry Karpeev 
1607c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
16089566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1609c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
16103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1611c5e4d11fSDmitry Karpeev }
1612c5e4d11fSDmitry Karpeev 
1613ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1614d71ae5a4SJacob Faibussowitsch {
1615a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1616a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16173966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1618a66be287SLois Curfman McInnes 
16193a40ed3dSBarry Smith   PetscFunctionBegin;
16204e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16219566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16222205254eSKarl Rupp 
16239371c9d4SSatish Balay   isend[0] = info->nz_used;
16249371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16259371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16269371c9d4SSatish Balay   isend[3] = info->memory;
16279371c9d4SSatish Balay   isend[4] = info->mallocs;
16282205254eSKarl Rupp 
16299566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16302205254eSKarl Rupp 
16319371c9d4SSatish Balay   isend[0] += info->nz_used;
16329371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16339371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16349371c9d4SSatish Balay   isend[3] += info->memory;
16359371c9d4SSatish Balay   isend[4] += info->mallocs;
1636a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16374e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16384e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16394e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16404e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16414e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1642a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1643462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16442205254eSKarl Rupp 
16454e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16464e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16474e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16484e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16494e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1650a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1651462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16522205254eSKarl Rupp 
16534e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16544e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16554e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16564e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16574e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1658a66be287SLois Curfman McInnes   }
16594e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16604e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16614e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1663a66be287SLois Curfman McInnes }
1664a66be287SLois Curfman McInnes 
1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1666d71ae5a4SJacob Faibussowitsch {
1667c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1668c74985f6SBarry Smith 
16693a40ed3dSBarry Smith   PetscFunctionBegin;
167012c028f9SKris Buschelman   switch (op) {
1671512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
167212c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
167328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1674a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
167512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16760ad02fcaSStefano Zampini   case MAT_USE_INODES:
167712c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16781a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1679fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16809566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16819566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168212c028f9SKris Buschelman     break;
168312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
168443674050SBarry Smith     MatCheckPreallocated(A, 1);
16854e0d8c25SBarry Smith     a->roworiented = flg;
16862205254eSKarl Rupp 
16879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16889566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168912c028f9SKris Buschelman     break;
1690d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1691d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1692d71ae5a4SJacob Faibussowitsch     break;
1693c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1694ffa07934SHong Zhang   case MAT_SPD:
169577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
169677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1697bf108f30SBarry Smith   case MAT_HERMITIAN:
1698bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1699b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1700b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1701b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
17029725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
170377e54ba9SKris Buschelman     break;
1704d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1705d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1706d71ae5a4SJacob Faibussowitsch     break;
1707d71ae5a4SJacob Faibussowitsch   default:
1708888c827cSStefano Zampini     break;
17093a40ed3dSBarry Smith   }
17103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1711c74985f6SBarry Smith }
1712c74985f6SBarry Smith 
1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1714d71ae5a4SJacob Faibussowitsch {
1715154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
171687828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1717d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1718d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1719b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
172039e00950SLois Curfman McInnes 
17213a40ed3dSBarry Smith   PetscFunctionBegin;
172228b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17237a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17247a0afa10SBarry Smith 
172570f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17267a0afa10SBarry Smith     /*
17277a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17287a0afa10SBarry Smith     */
17297a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1730b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1731d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17327a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17332205254eSKarl Rupp       if (max < tmp) max = tmp;
17347a0afa10SBarry Smith     }
17359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17367a0afa10SBarry Smith   }
17377a0afa10SBarry Smith 
1738aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1739abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
174039e00950SLois Curfman McInnes 
17419371c9d4SSatish Balay   pvA = &vworkA;
17429371c9d4SSatish Balay   pcA = &cworkA;
17439371c9d4SSatish Balay   pvB = &vworkB;
17449371c9d4SSatish Balay   pcB = &cworkB;
17459371c9d4SSatish Balay   if (!v) {
17469371c9d4SSatish Balay     pvA = NULL;
17479371c9d4SSatish Balay     pvB = NULL;
17489371c9d4SSatish Balay   }
17499371c9d4SSatish Balay   if (!idx) {
17509371c9d4SSatish Balay     pcA = NULL;
17519371c9d4SSatish Balay     if (!v) pcB = NULL;
17529371c9d4SSatish Balay   }
17539566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17549566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1755154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1756154123eaSLois Curfman McInnes 
175770f0671dSBarry Smith   cmap = mat->garray;
1758154123eaSLois Curfman McInnes   if (v || idx) {
1759154123eaSLois Curfman McInnes     if (nztot) {
1760154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1761b1d57f15SBarry Smith       PetscInt imark = -1;
1762154123eaSLois Curfman McInnes       if (v) {
176370f0671dSBarry Smith         *v = v_p = mat->rowvalues;
176439e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
176570f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1766154123eaSLois Curfman McInnes           else break;
1767154123eaSLois Curfman McInnes         }
1768154123eaSLois Curfman McInnes         imark = i;
176970f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
177070f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1771154123eaSLois Curfman McInnes       }
1772154123eaSLois Curfman McInnes       if (idx) {
177370f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
177470f0671dSBarry Smith         if (imark > -1) {
1775ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
177670f0671dSBarry Smith         } else {
1777154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
177870f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1779154123eaSLois Curfman McInnes             else break;
1780154123eaSLois Curfman McInnes           }
1781154123eaSLois Curfman McInnes           imark = i;
178270f0671dSBarry Smith         }
178370f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
178470f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
178539e00950SLois Curfman McInnes       }
17863f97c4b0SBarry Smith     } else {
1787f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1788f4259b30SLisandro Dalcin       if (v) *v = NULL;
17891ca473b0SSatish Balay     }
1790154123eaSLois Curfman McInnes   }
179139e00950SLois Curfman McInnes   *nz = nztot;
17929566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17939566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179539e00950SLois Curfman McInnes }
179639e00950SLois Curfman McInnes 
1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1798d71ae5a4SJacob Faibussowitsch {
17997a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
18003a40ed3dSBarry Smith 
18013a40ed3dSBarry Smith   PetscFunctionBegin;
180228b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
18037a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
18043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
180539e00950SLois Curfman McInnes }
180639e00950SLois Curfman McInnes 
1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1808d71ae5a4SJacob Faibussowitsch {
1809855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1810ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1811d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1812329f5518SBarry Smith   PetscReal        sum = 0.0;
1813fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
181404ca555eSLois Curfman McInnes 
18153a40ed3dSBarry Smith   PetscFunctionBegin;
181617699dbbSLois Curfman McInnes   if (aij->size == 1) {
18179566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
181837fa93a5SLois Curfman McInnes   } else {
18199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
182104ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1822fff043a9SJunchao Zhang       v = amata;
182304ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18249371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18259371c9d4SSatish Balay         v++;
182604ca555eSLois Curfman McInnes       }
1827fff043a9SJunchao Zhang       v = bmata;
182804ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18299371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18309371c9d4SSatish Balay         v++;
183104ca555eSLois Curfman McInnes       }
1832462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18338f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18349566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18353a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1836e91c04dfSPierre Jolivet       PetscReal *tmp;
1837b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18389566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
183904ca555eSLois Curfman McInnes       *norm = 0.0;
18409371c9d4SSatish Balay       v     = amata;
18419371c9d4SSatish Balay       jj    = amat->j;
184204ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18439371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18449371c9d4SSatish Balay         v++;
184504ca555eSLois Curfman McInnes       }
18469371c9d4SSatish Balay       v  = bmata;
18479371c9d4SSatish Balay       jj = bmat->j;
184804ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18499371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18509371c9d4SSatish Balay         v++;
185104ca555eSLois Curfman McInnes       }
1852e91c04dfSPierre Jolivet       PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1853d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
1854e91c04dfSPierre Jolivet         if (tmp[j] > *norm) *norm = tmp[j];
185504ca555eSLois Curfman McInnes       }
18569566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18579566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18583a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1859329f5518SBarry Smith       PetscReal ntemp = 0.0;
1860d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18618e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
186204ca555eSLois Curfman McInnes         sum = 0.0;
186304ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18649371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18659371c9d4SSatish Balay           v++;
186604ca555eSLois Curfman McInnes         }
18678e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
186804ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18699371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18709371c9d4SSatish Balay           v++;
187104ca555eSLois Curfman McInnes         }
1872515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
187304ca555eSLois Curfman McInnes       }
1874462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18759566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1876ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18779566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18789566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
187937fa93a5SLois Curfman McInnes   }
18803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1881855ac2c5SLois Curfman McInnes }
1882855ac2c5SLois Curfman McInnes 
1883ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1884d71ae5a4SJacob Faibussowitsch {
1885a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1886a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1887071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1888071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1889a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1890ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1891b7c46309SBarry Smith 
18923a40ed3dSBarry Smith   PetscFunctionBegin;
18937fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18949371c9d4SSatish Balay   ma = A->rmap->n;
18959371c9d4SSatish Balay   na = A->cmap->n;
18969371c9d4SSatish Balay   mb = a->B->rmap->n;
18979371c9d4SSatish Balay   nb = a->B->cmap->n;
18989371c9d4SSatish Balay   ai = Aloc->i;
18999371c9d4SSatish Balay   aj = Aloc->j;
19009371c9d4SSatish Balay   bi = Bloc->i;
19019371c9d4SSatish Balay   bj = Bloc->j;
1902fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
190380bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
190480bcc5a1SJed Brown     PetscSFNode         *oloc;
1905713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
190680bcc5a1SJed Brown 
19079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
190880bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19099566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1910cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
191180bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19129566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
191380bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
191480bcc5a1SJed Brown     /* map those to global */
19159566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19169566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19179566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19189566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
191957168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
192057168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19219566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1922d4bb536fSBarry Smith 
19239566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19249566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
19259566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs)));
19269566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19279566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19289566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1929fc4dec0aSBarry Smith   } else {
1930fc4dec0aSBarry Smith     B = *matout;
19319566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1932fc4dec0aSBarry Smith   }
1933b7c46309SBarry Smith 
1934f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1935a8661f62Sandi selinger   A_diag      = a->A;
1936a8661f62Sandi selinger   B_diag      = &b->A;
1937a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1938a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1939a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1940a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1941f79cb1a0Sandi selinger 
1942f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1943ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1944f79cb1a0Sandi selinger 
19454cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1946a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19477fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19489566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1949f79cb1a0Sandi selinger 
1950b7c46309SBarry Smith   /* copy over the B part */
19519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1953ce496241SStefano Zampini   pbv = bv;
1954d0f46423SBarry Smith   row = A->rmap->rstart;
19552205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
195661a2fbbaSHong Zhang   cols_tmp = cols;
1957da668accSHong Zhang   for (i = 0; i < mb; i++) {
1958da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19599566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19602205254eSKarl Rupp     row++;
1961720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1962720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1963b7c46309SBarry Smith   }
19649566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1966fc73b1b3SBarry Smith 
19679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1969cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19700de55854SLois Curfman McInnes     *matout = B;
19710de55854SLois Curfman McInnes   } else {
19729566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19730de55854SLois Curfman McInnes   }
19743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1975b7c46309SBarry Smith }
1976b7c46309SBarry Smith 
1977ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1978d71ae5a4SJacob Faibussowitsch {
19794b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19804b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1981b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1982a008b906SSatish Balay 
19833a40ed3dSBarry Smith   PetscFunctionBegin;
19849566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19854b967eb1SSatish Balay   if (rr) {
19869566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
198708401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19884b967eb1SSatish Balay     /* Overlap communication with computation. */
19899566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1990a008b906SSatish Balay   }
19914b967eb1SSatish Balay   if (ll) {
19929566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
199308401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1994dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19954b967eb1SSatish Balay   }
19964b967eb1SSatish Balay   /* scale  the diagonal block */
1997dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19984b967eb1SSatish Balay 
19994b967eb1SSatish Balay   if (rr) {
20004b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
20019566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
2002dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
20034b967eb1SSatish Balay   }
20043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2005a008b906SSatish Balay }
2006a008b906SSatish Balay 
2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2008d71ae5a4SJacob Faibussowitsch {
2009bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20103a40ed3dSBarry Smith 
20113a40ed3dSBarry Smith   PetscFunctionBegin;
20129566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2014bb5a7306SBarry Smith }
2015bb5a7306SBarry Smith 
2016ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2017d71ae5a4SJacob Faibussowitsch {
2018d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2019d4bb536fSBarry Smith   Mat         a, b, c, d;
2020ace3abfcSBarry Smith   PetscBool   flg;
2021d4bb536fSBarry Smith 
20223a40ed3dSBarry Smith   PetscFunctionBegin;
20239371c9d4SSatish Balay   a = matA->A;
20249371c9d4SSatish Balay   b = matA->B;
20259371c9d4SSatish Balay   c = matB->A;
20269371c9d4SSatish Balay   d = matB->B;
2027d4bb536fSBarry Smith 
20289566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
202948a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
2030462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2032d4bb536fSBarry Smith }
2033d4bb536fSBarry Smith 
2034ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2035d71ae5a4SJacob Faibussowitsch {
2036cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2037cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2038cb5b572fSBarry Smith 
2039cb5b572fSBarry Smith   PetscFunctionBegin;
204033f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
204133f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2042cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2043cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2044cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2045cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2046cb5b572fSBarry Smith        then copying the submatrices */
20479566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2048cb5b572fSBarry Smith   } else {
20499566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20509566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2051cb5b572fSBarry Smith   }
20529566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2054cb5b572fSBarry Smith }
2055cb5b572fSBarry Smith 
2056001ddc4fSHong Zhang /*
2057001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2058001ddc4fSHong Zhang    have different nonzero structure.
2059001ddc4fSHong Zhang */
2060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2061d71ae5a4SJacob Faibussowitsch {
2062001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
206395b7e79eSJed Brown 
206495b7e79eSJed Brown   PetscFunctionBegin;
206595b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
206695b7e79eSJed Brown   for (i = 0; i < m; i++) {
20678e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2068001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2069001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
207095b7e79eSJed Brown     nnz[i] = 0;
207195b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2072001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2073001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
207495b7e79eSJed Brown       nnz[i]++;
207595b7e79eSJed Brown     }
207695b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
207795b7e79eSJed Brown   }
20783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207995b7e79eSJed Brown }
208095b7e79eSJed Brown 
2081001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2082d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2083d71ae5a4SJacob Faibussowitsch {
2084001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2085001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2086001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2087001ddc4fSHong Zhang 
2088001ddc4fSHong Zhang   PetscFunctionBegin;
20899566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2091001ddc4fSHong Zhang }
2092001ddc4fSHong Zhang 
2093ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2094d71ae5a4SJacob Faibussowitsch {
2095ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2096ac90fabeSBarry Smith 
2097ac90fabeSBarry Smith   PetscFunctionBegin;
2098ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
20999566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
21009566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2101ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
21029566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2103ac90fabeSBarry Smith   } else {
21049f5f6813SShri Abhyankar     Mat       B;
21059f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2106d9d719b4SStefano Zampini 
21079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21099566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21109566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21119566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21129566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21139566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21149566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21159566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21169566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21179566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21189566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21199566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2120ac90fabeSBarry Smith   }
21213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2122ac90fabeSBarry Smith }
2123ac90fabeSBarry Smith 
21242726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2125354c94deSBarry Smith 
2126ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2127d71ae5a4SJacob Faibussowitsch {
21285f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21295f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2130354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2131354c94deSBarry Smith 
21329566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21339566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21345f80ce2aSJacob Faibussowitsch   }
21353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2136354c94deSBarry Smith }
2137354c94deSBarry Smith 
2138ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2139d71ae5a4SJacob Faibussowitsch {
214099cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214199cafbc1SBarry Smith 
214299cafbc1SBarry Smith   PetscFunctionBegin;
21439566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21449566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214699cafbc1SBarry Smith }
214799cafbc1SBarry Smith 
2148ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2149d71ae5a4SJacob Faibussowitsch {
215099cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
215199cafbc1SBarry Smith 
215299cafbc1SBarry Smith   PetscFunctionBegin;
21539566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21549566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215699cafbc1SBarry Smith }
215799cafbc1SBarry Smith 
2158ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2159d71ae5a4SJacob Faibussowitsch {
2160c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2161475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
216262e5df07SMark Adams   PetscScalar       *vv;
2163475b8b61SHong Zhang   Vec                vB, vA;
216462e5df07SMark Adams   const PetscScalar *va, *vb;
2165c91732d9SHong Zhang 
2166c91732d9SHong Zhang   PetscFunctionBegin;
2167c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
21689566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2169475b8b61SHong Zhang 
217062e5df07SMark Adams   PetscCall(VecGetArrayRead(vA, &va));
2171c91732d9SHong Zhang   if (idx) {
2172475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2173d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2174c91732d9SHong Zhang     }
2175c91732d9SHong Zhang   }
2176c91732d9SHong Zhang 
2177c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
21789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21799566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2180c91732d9SHong Zhang 
21819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21829566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2183475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2184c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2185475b8b61SHong Zhang       vv[i] = vb[i];
2186c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2187475b8b61SHong Zhang     } else {
2188475b8b61SHong Zhang       vv[i] = va[i];
21899371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2190c91732d9SHong Zhang     }
2191c91732d9SHong Zhang   }
219262e5df07SMark Adams   PetscCall(VecRestoreArrayWrite(v, &vv));
219362e5df07SMark Adams   PetscCall(VecRestoreArrayRead(vA, &va));
21949566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21959566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21979566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2199c91732d9SHong Zhang }
2200c91732d9SHong Zhang 
2201eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2202eede4a3fSMark Adams {
2203eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2204eede4a3fSMark Adams   Vec         vB, vA;
2205eede4a3fSMark Adams 
2206eede4a3fSMark Adams   PetscFunctionBegin;
2207c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
2208eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2209c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
2210eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2211eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2212eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2213eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2214eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2215eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2216eede4a3fSMark Adams }
2217eede4a3fSMark Adams 
2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2219d71ae5a4SJacob Faibussowitsch {
2220f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2221f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2222f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2223f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2224f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2225f07e67edSHong Zhang   Vec                diagV, offdiagV;
2226ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2227ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2228f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2229f07e67edSHong Zhang   Mat                B = mat->B;
2230f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2231c87e5d42SMatthew Knepley 
2232c87e5d42SMatthew Knepley   PetscFunctionBegin;
2233f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2234f07e67edSHong Zhang   if (A->cmap->N == n) {
22359566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22369566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22379566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22389566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22399566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22403ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2241f07e67edSHong Zhang   } else if (n == 0) {
2242f07e67edSHong Zhang     if (m) {
22439566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22449371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22459371c9d4SSatish Balay         a[r] = 0.0;
22469371c9d4SSatish Balay         if (idx) idx[r] = -1;
22479371c9d4SSatish Balay       }
22489566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2249f07e67edSHong Zhang     }
22503ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2251f07e67edSHong Zhang   }
2252f07e67edSHong Zhang 
22539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22549566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22559566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22569566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2257f07e67edSHong Zhang 
2258f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22599566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2260ce496241SStefano Zampini   ba = bav;
2261f07e67edSHong Zhang   bi = b->i;
2262f07e67edSHong Zhang   bj = b->j;
22639566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2264f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2265f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2266f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22679371c9d4SSatish Balay       offdiagA[r]   = *ba;
22689371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2269f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2270f07e67edSHong Zhang       offdiagA[r] = 0.0;
2271f07e67edSHong Zhang 
2272f07e67edSHong Zhang       /* Find first hole in the cmap */
2273f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2274f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2275f07e67edSHong Zhang         if (col > j && j < cstart) {
2276f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2277f07e67edSHong Zhang           break;
2278f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2279f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2280f07e67edSHong Zhang           break;
2281f07e67edSHong Zhang         }
2282f07e67edSHong Zhang       }
22834e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2284f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2285f07e67edSHong Zhang         if (ncols == 0) {
2286f07e67edSHong Zhang           if (cstart) {
2287f07e67edSHong Zhang             offdiagIdx[r] = 0;
2288f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2289f07e67edSHong Zhang         } else { /* ncols > 0 */
2290f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2291f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2292f07e67edSHong Zhang         }
2293f07e67edSHong Zhang       }
2294f07e67edSHong Zhang     }
2295f07e67edSHong Zhang 
2296f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22979371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22989371c9d4SSatish Balay         offdiagA[r]   = *ba;
22999371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
23009371c9d4SSatish Balay       }
23019371c9d4SSatish Balay       ba++;
23029371c9d4SSatish Balay       bj++;
2303f07e67edSHong Zhang     }
2304f07e67edSHong Zhang   }
2305f07e67edSHong Zhang 
23069566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
23079566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2308f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2309f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2310f07e67edSHong Zhang       a[r] = diagA[r];
2311f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2312f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2313f07e67edSHong Zhang       a[r] = diagA[r];
2314c87e5d42SMatthew Knepley       if (idx) {
2315f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2316f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2317f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2318f07e67edSHong Zhang       }
2319f07e67edSHong Zhang     } else {
2320f07e67edSHong Zhang       a[r] = offdiagA[r];
2321f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2322c87e5d42SMatthew Knepley     }
2323c87e5d42SMatthew Knepley   }
23249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23279566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23289566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23299566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23309566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2332c87e5d42SMatthew Knepley }
2333c87e5d42SMatthew Knepley 
2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2335d71ae5a4SJacob Faibussowitsch {
233603bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2337fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2338fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
233903bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
234003bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
234103bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2342ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2343ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2344fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2345fa213d2fSHong Zhang   Mat                B = mat->B;
2346fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
234703bc72f1SMatthew Knepley 
234803bc72f1SMatthew Knepley   PetscFunctionBegin;
2349fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2350fa213d2fSHong Zhang   if (A->cmap->N == n) {
23519566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23529566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23539566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23549566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23559566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23563ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2357fa213d2fSHong Zhang   } else if (n == 0) {
2358fa213d2fSHong Zhang     if (m) {
23599566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23609371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23619371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23629371c9d4SSatish Balay         if (idx) idx[r] = -1;
23639371c9d4SSatish Balay       }
23649566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2365fa213d2fSHong Zhang     }
23663ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2367fa213d2fSHong Zhang   }
2368fa213d2fSHong Zhang 
23699566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23709566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23719566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23729566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2373fa213d2fSHong Zhang 
2374fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23759566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2376ce496241SStefano Zampini   ba = bav;
2377fa213d2fSHong Zhang   bi = b->i;
2378fa213d2fSHong Zhang   bj = b->j;
23799566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2380fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2381fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2382fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23839371c9d4SSatish Balay       offdiagA[r]   = *ba;
23849371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2385fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2386fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2387fa213d2fSHong Zhang 
2388fa213d2fSHong Zhang       /* Find first hole in the cmap */
2389fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2390fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2391fa213d2fSHong Zhang         if (col > j && j < cstart) {
2392fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2393fa213d2fSHong Zhang           break;
2394fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2395fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2396fa213d2fSHong Zhang           break;
2397fa213d2fSHong Zhang         }
2398fa213d2fSHong Zhang       }
23994e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2400fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2401fa213d2fSHong Zhang         if (ncols == 0) {
2402fa213d2fSHong Zhang           if (cstart) {
2403fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2404fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2405fa213d2fSHong Zhang         } else { /* ncols > 0 */
2406fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2407fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2408fa213d2fSHong Zhang         }
2409fa213d2fSHong Zhang       }
2410fa213d2fSHong Zhang     }
2411fa213d2fSHong Zhang 
2412fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24139371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24149371c9d4SSatish Balay         offdiagA[r]   = *ba;
24159371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24169371c9d4SSatish Balay       }
24179371c9d4SSatish Balay       ba++;
24189371c9d4SSatish Balay       bj++;
2419fa213d2fSHong Zhang     }
2420fa213d2fSHong Zhang   }
2421fa213d2fSHong Zhang 
24229566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24239566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2424fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2425fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
242603bc72f1SMatthew Knepley       a[r] = diagA[r];
2427fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2428fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2429fa213d2fSHong Zhang       a[r] = diagA[r];
2430fa213d2fSHong Zhang       if (idx) {
2431fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
243203bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2433fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2434fa213d2fSHong Zhang       }
243503bc72f1SMatthew Knepley     } else {
243603bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2437fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
243803bc72f1SMatthew Knepley     }
243903bc72f1SMatthew Knepley   }
24409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24419566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24439566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24449566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24459566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24469566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244803bc72f1SMatthew Knepley }
244903bc72f1SMatthew Knepley 
2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2451d71ae5a4SJacob Faibussowitsch {
2452c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24531a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24541a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2455c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2456c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2457c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2458ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2459ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24601a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24611a254869SHong Zhang   Mat                B = mat->B;
24621a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2463c87e5d42SMatthew Knepley 
2464c87e5d42SMatthew Knepley   PetscFunctionBegin;
24651a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24661a254869SHong Zhang   if (A->cmap->N == n) {
24679566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24689566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24699566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24709566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24719566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24723ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24731a254869SHong Zhang   } else if (n == 0) {
24741a254869SHong Zhang     if (m) {
24759566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24769371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24779371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24789371c9d4SSatish Balay         if (idx) idx[r] = -1;
24799371c9d4SSatish Balay       }
24809566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24811a254869SHong Zhang     }
24823ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24831a254869SHong Zhang   }
24841a254869SHong Zhang 
24859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24869566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24879566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24889566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24891a254869SHong Zhang 
24901a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2492ce496241SStefano Zampini   ba = bav;
24931a254869SHong Zhang   bi = b->i;
24941a254869SHong Zhang   bj = b->j;
24959566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24961a254869SHong Zhang   for (r = 0; r < m; r++) {
24971a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24981a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24999371c9d4SSatish Balay       offdiagA[r]   = *ba;
25009371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
25011a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
25021a254869SHong Zhang       offdiagA[r] = 0.0;
25031a254869SHong Zhang 
25041a254869SHong Zhang       /* Find first hole in the cmap */
25051a254869SHong Zhang       for (j = 0; j < ncols; j++) {
25061a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
25071a254869SHong Zhang         if (col > j && j < cstart) {
25081a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25091a254869SHong Zhang           break;
25101a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25111a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25121a254869SHong Zhang           break;
25131a254869SHong Zhang         }
25141a254869SHong Zhang       }
25154e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25161a254869SHong Zhang         /* a hole is outside compressed Bcols */
25171a254869SHong Zhang         if (ncols == 0) {
25181a254869SHong Zhang           if (cstart) {
25191a254869SHong Zhang             offdiagIdx[r] = 0;
25201a254869SHong Zhang           } else offdiagIdx[r] = cend;
25211a254869SHong Zhang         } else { /* ncols > 0 */
25221a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25231a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25241a254869SHong Zhang         }
25251a254869SHong Zhang       }
25261a254869SHong Zhang     }
25271a254869SHong Zhang 
25281a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25299371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25309371c9d4SSatish Balay         offdiagA[r]   = *ba;
25319371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25329371c9d4SSatish Balay       }
25339371c9d4SSatish Balay       ba++;
25349371c9d4SSatish Balay       bj++;
25351a254869SHong Zhang     }
25361a254869SHong Zhang   }
25371a254869SHong Zhang 
25389566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25399566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25401a254869SHong Zhang   for (r = 0; r < m; ++r) {
25411a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2542c87e5d42SMatthew Knepley       a[r] = diagA[r];
25431a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25441a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25451a254869SHong Zhang       a[r] = diagA[r];
25461a254869SHong Zhang       if (idx) {
25471a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2548c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25491a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25501a254869SHong Zhang       }
2551c87e5d42SMatthew Knepley     } else {
2552c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25531a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2554c87e5d42SMatthew Knepley     }
2555c87e5d42SMatthew Knepley   }
25569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25579566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25599566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25609566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25619566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25629566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2564c87e5d42SMatthew Knepley }
2565c87e5d42SMatthew Knepley 
2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2567d71ae5a4SJacob Faibussowitsch {
2568f6d58c54SBarry Smith   Mat *dummy;
25695494a064SHong Zhang 
25705494a064SHong Zhang   PetscFunctionBegin;
25719566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2572f6d58c54SBarry Smith   *newmat = *dummy;
25739566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25755494a064SHong Zhang }
25765494a064SHong Zhang 
2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2578d71ae5a4SJacob Faibussowitsch {
2579bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2580bbead8a2SBarry Smith 
2581bbead8a2SBarry Smith   PetscFunctionBegin;
25829566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25837b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2585bbead8a2SBarry Smith }
2586bbead8a2SBarry Smith 
2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2588d71ae5a4SJacob Faibussowitsch {
258973a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
259073a71a0fSBarry Smith 
259173a71a0fSBarry Smith   PetscFunctionBegin;
259208401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25939566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2594679944adSJunchao Zhang   if (x->assembled) {
25959566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2596679944adSJunchao Zhang   } else {
25979566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2598679944adSJunchao Zhang   }
25999566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
26009566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
26013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
260273a71a0fSBarry Smith }
2603bbead8a2SBarry Smith 
2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2605d71ae5a4SJacob Faibussowitsch {
2606b1b1104fSBarry Smith   PetscFunctionBegin;
2607b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2608b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2610b1b1104fSBarry Smith }
2611b1b1104fSBarry Smith 
2612b1b1104fSBarry Smith /*@
2613f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2614f2afee66SBarry Smith 
26152ef1f0ffSBarry Smith   Not Collective
2616f2afee66SBarry Smith 
2617f2afee66SBarry Smith   Input Parameter:
2618f2afee66SBarry Smith . A - the matrix
2619f2afee66SBarry Smith 
2620f2afee66SBarry Smith   Output Parameter:
2621f2afee66SBarry Smith . nz - the number of nonzeros
2622f2afee66SBarry Smith 
2623f2afee66SBarry Smith   Level: advanced
2624f2afee66SBarry Smith 
2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2626f2afee66SBarry Smith @*/
2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2628d71ae5a4SJacob Faibussowitsch {
2629f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2630f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2631dfebb78cSStefano Zampini   PetscBool   isaij;
2632f2afee66SBarry Smith 
2633f2afee66SBarry Smith   PetscFunctionBegin;
2634dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2635dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2636f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2638f2afee66SBarry Smith }
2639f2afee66SBarry Smith 
2640f2afee66SBarry Smith /*@
2641b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2642b1b1104fSBarry Smith 
2643c3339decSBarry Smith   Collective
2644b1b1104fSBarry Smith 
2645b1b1104fSBarry Smith   Input Parameters:
2646b1b1104fSBarry Smith + A  - the matrix
264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2648b1b1104fSBarry Smith 
264996a0c994SBarry Smith   Level: advanced
265096a0c994SBarry Smith 
2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2652b1b1104fSBarry Smith @*/
2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2654d71ae5a4SJacob Faibussowitsch {
2655b1b1104fSBarry Smith   PetscFunctionBegin;
2656cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2658b1b1104fSBarry Smith }
2659b1b1104fSBarry Smith 
2660*ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject)
2661d71ae5a4SJacob Faibussowitsch {
2662b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2663b1b1104fSBarry Smith 
2664b1b1104fSBarry Smith   PetscFunctionBegin;
2665d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2666b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26679566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26681baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2669d0609cedSBarry Smith   PetscOptionsHeadEnd();
26703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2671b1b1104fSBarry Smith }
2672b1b1104fSBarry Smith 
2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2674d71ae5a4SJacob Faibussowitsch {
26757d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2676c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26777d68702bSBarry Smith 
26787d68702bSBarry Smith   PetscFunctionBegin;
2679c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26809566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26815519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2682b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26839566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2684b83222d8SBarry Smith     aij->nonew = nonew;
26857d68702bSBarry Smith   }
26869566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26887d68702bSBarry Smith }
26897d68702bSBarry Smith 
2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2691d71ae5a4SJacob Faibussowitsch {
26923b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26933b49f96aSBarry Smith 
26943b49f96aSBarry Smith   PetscFunctionBegin;
269508401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26969566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26973b49f96aSBarry Smith   if (d) {
26983b49f96aSBarry Smith     PetscInt rstart;
26999566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
27003b49f96aSBarry Smith     *d += rstart;
27013b49f96aSBarry Smith   }
27023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27033b49f96aSBarry Smith }
27043b49f96aSBarry Smith 
2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2706d71ae5a4SJacob Faibussowitsch {
2707a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2708a8ee9fb5SBarry Smith 
2709a8ee9fb5SBarry Smith   PetscFunctionBegin;
27109566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2712a8ee9fb5SBarry Smith }
27133b49f96aSBarry Smith 
271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2715dec0b466SHong Zhang {
2716dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2717dec0b466SHong Zhang 
2718dec0b466SHong Zhang   PetscFunctionBegin;
271958c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
272058c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2722dec0b466SHong Zhang }
2723dec0b466SHong Zhang 
2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2725cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2726cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2727cda55fadSBarry Smith                                        MatMult_MPIAIJ,
272897304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27297c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27307c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2731f4259b30SLisandro Dalcin                                        NULL,
2732f4259b30SLisandro Dalcin                                        NULL,
2733f4259b30SLisandro Dalcin                                        NULL,
2734f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2735f4259b30SLisandro Dalcin                                        NULL,
2736f4259b30SLisandro Dalcin                                        NULL,
273741f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2738b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
273997304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2740cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2741cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2742cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2743cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
274497304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2745cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2746cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2747cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2748d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2749f4259b30SLisandro Dalcin                                        NULL,
2750f4259b30SLisandro Dalcin                                        NULL,
2751f4259b30SLisandro Dalcin                                        NULL,
2752f4259b30SLisandro Dalcin                                        NULL,
275326cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2754f4259b30SLisandro Dalcin                                        NULL,
2755f4259b30SLisandro Dalcin                                        NULL,
2756a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2757f4259b30SLisandro Dalcin                                        NULL,
2758d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2759f4259b30SLisandro Dalcin                                        NULL,
2760f4259b30SLisandro Dalcin                                        NULL,
2761f4259b30SLisandro Dalcin                                        NULL,
2762f4259b30SLisandro Dalcin                                        NULL,
2763d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27647dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2765cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2766cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2767cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2768d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2769cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27707d68702bSBarry Smith                                        MatShift_MPIAIJ,
277199e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2772564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
277373a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27748a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27758a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2776f4259b30SLisandro Dalcin                                        NULL,
2777f4259b30SLisandro Dalcin                                        NULL,
277893dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2779f4259b30SLisandro Dalcin                                        NULL,
2780cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
278172e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2782f4259b30SLisandro Dalcin                                        NULL,
27837dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2784e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2785e03a110bSBarry Smith                                        MatView_MPIAIJ,
2786f4259b30SLisandro Dalcin                                        NULL,
2787f4259b30SLisandro Dalcin                                        NULL,
2788f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2789f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2790f4259b30SLisandro Dalcin                                        NULL,
2791f4259b30SLisandro Dalcin                                        NULL,
2792f4259b30SLisandro Dalcin                                        NULL,
2793d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2794c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2795f4259b30SLisandro Dalcin                                        NULL,
2796f4259b30SLisandro Dalcin                                        NULL,
2797f4259b30SLisandro Dalcin                                        NULL,
2798f4259b30SLisandro Dalcin                                        NULL,
27993acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2800b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2801f4259b30SLisandro Dalcin                                        NULL,
2802f4259b30SLisandro Dalcin                                        NULL,
2803f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2804f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2805f4259b30SLisandro Dalcin                                        NULL,
2806f4259b30SLisandro Dalcin                                        NULL,
28075bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
28086cff0a6bSPierre Jolivet                                        NULL,
2809f4259b30SLisandro Dalcin                                        NULL,
2810f4259b30SLisandro Dalcin                                        NULL,
2811f4259b30SLisandro Dalcin                                        NULL,
2812f4259b30SLisandro Dalcin                                        NULL,
2813f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2814f4259b30SLisandro Dalcin                                        NULL,
281526be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2816f4259b30SLisandro Dalcin                                        NULL,
2817f4259b30SLisandro Dalcin                                        NULL,
2818cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2819f4259b30SLisandro Dalcin                                        NULL,
2820f4259b30SLisandro Dalcin                                        NULL,
2821f4259b30SLisandro Dalcin                                        NULL,
2822b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28234222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2824f4259b30SLisandro Dalcin                                        NULL,
2825f4259b30SLisandro Dalcin                                        NULL,
28262fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2827f4259b30SLisandro Dalcin                                        NULL,
2828d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
282999cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
283069db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2831f4259b30SLisandro Dalcin                                        NULL,
2832f4259b30SLisandro Dalcin                                        NULL,
2833f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2834f4259b30SLisandro Dalcin                                        NULL,
28355494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2836f4259b30SLisandro Dalcin                                        NULL,
28373b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2838d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2839f4259b30SLisandro Dalcin                                        NULL,
2840c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2841f4259b30SLisandro Dalcin                                        NULL,
2842f4259b30SLisandro Dalcin                                        NULL,
2843b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2844f4259b30SLisandro Dalcin                                        NULL,
2845f4259b30SLisandro Dalcin                                        NULL,
2846f4259b30SLisandro Dalcin                                        NULL,
2847b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2848f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2849a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2850bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2851a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28527dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2853f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2854f4259b30SLisandro Dalcin                                        NULL,
2855f4259b30SLisandro Dalcin                                        NULL,
2856187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2857f4259b30SLisandro Dalcin                                        NULL,
2858f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2859f4259b30SLisandro Dalcin                                        NULL,
2860f4259b30SLisandro Dalcin                                        NULL,
2861f4259b30SLisandro Dalcin                                        NULL,
2862f4259b30SLisandro Dalcin                                        NULL,
286346533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2864f4259b30SLisandro Dalcin                                        NULL,
2865f4259b30SLisandro Dalcin                                        NULL,
28669c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2867a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28684222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2869f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2870f4259b30SLisandro Dalcin                                        NULL,
287172833a62Smarkadams4                                        NULL,
287272833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28732d776b49SBarry Smith                                        NULL,
2874dec0b466SHong Zhang                                        /*150*/ NULL,
2875eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
28764cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIAIJ,
287742ce410bSJunchao Zhang                                        NULL,
287842ce410bSJunchao Zhang                                        NULL,
2879fe1fc275SAlexander                                        /*155*/ NULL,
2880fe1fc275SAlexander                                        MatCopyHashToXAIJ_MPI_Hash};
288136ce4990SBarry Smith 
2882ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2883d71ae5a4SJacob Faibussowitsch {
28842e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28852e8a6d31SBarry Smith 
28862e8a6d31SBarry Smith   PetscFunctionBegin;
28879566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28889566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28902e8a6d31SBarry Smith }
28912e8a6d31SBarry Smith 
2892ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2893d71ae5a4SJacob Faibussowitsch {
28942e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28952e8a6d31SBarry Smith 
28962e8a6d31SBarry Smith   PetscFunctionBegin;
28979566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28989566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29002e8a6d31SBarry Smith }
29018a729477SBarry Smith 
2902d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2903d71ae5a4SJacob Faibussowitsch {
2904ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
29055d2a9ed1SStefano Zampini   PetscMPIInt size;
2906a23d5eceSKris Buschelman 
2907a23d5eceSKris Buschelman   PetscFunctionBegin;
2908ad79cf63SBarry Smith   if (B->hash_active) {
2909aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2910ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2911ad79cf63SBarry Smith   }
29129566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29139566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2914899cda47SBarry Smith 
2915cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2916eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2917cb7b82ddSBarry Smith #else
29189566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2919cb7b82ddSBarry Smith #endif
29209566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29229566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2923cb7b82ddSBarry Smith 
29249566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2925c508b908SBarry Smith 
2926c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29279566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29289566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29299566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29309566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29319566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2932c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2933cb7b82ddSBarry Smith 
2934c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2935ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29369566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29379566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29389566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29399566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2940c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2941899cda47SBarry Smith 
29429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2944526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2945cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
294615001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2948a23d5eceSKris Buschelman }
2949a23d5eceSKris Buschelman 
2950ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2951d71ae5a4SJacob Faibussowitsch {
2952ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2953846b4da1SFande Kong 
2954846b4da1SFande Kong   PetscFunctionBegin;
2955846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29569566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29579566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2958eb14dd14SAlex Lindsay   if (B->assembled || B->was_assembled) PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE));
2959eb14dd14SAlex Lindsay   else {
2960846b4da1SFande Kong #if defined(PETSC_USE_CTABLE)
2961eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&b->colmap));
2962846b4da1SFande Kong #else
29639566063dSJacob Faibussowitsch     PetscCall(PetscFree(b->colmap));
2964846b4da1SFande Kong #endif
29659566063dSJacob Faibussowitsch     PetscCall(PetscFree(b->garray));
29669566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&b->lvec));
2967eb14dd14SAlex Lindsay   }
29689566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2969846b4da1SFande Kong 
29709566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->A));
29719566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->B));
2972846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2973846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2974846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
29753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2976846b4da1SFande Kong }
2977846b4da1SFande Kong 
2978d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2979d71ae5a4SJacob Faibussowitsch {
2980d6dfbf8fSBarry Smith   Mat         mat;
2981416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2982d6dfbf8fSBarry Smith 
29833a40ed3dSBarry Smith   PetscFunctionBegin;
2984f4259b30SLisandro Dalcin   *newmat = NULL;
29859566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29869566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29879566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29889566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2989273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2990e1b6402fSHong Zhang 
2991d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2992501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2993e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2994d6dfbf8fSBarry Smith 
299517699dbbSLois Curfman McInnes   a->size         = oldmat->size;
299617699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2997e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2998e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2999501880eeSStefano Zampini   a->rowindices   = NULL;
3000501880eeSStefano Zampini   a->rowvalues    = NULL;
3001bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
3002d6dfbf8fSBarry Smith 
30039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
30049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3005420957c1SBarry Smith   if (matin->hash_active) {
3006420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3007420957c1SBarry Smith   } else {
3008420957c1SBarry Smith     mat->preallocated = matin->preallocated;
30092ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
3010aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3011eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
3012b1fc9764SSatish Balay #else
30139566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
30149566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
3015b1fc9764SSatish Balay #endif
3016501880eeSStefano Zampini     } else a->colmap = NULL;
30173f41c07dSBarry Smith     if (oldmat->garray) {
3018b1d57f15SBarry Smith       PetscInt len;
3019d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30209566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30219566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3022501880eeSStefano Zampini     } else a->garray = NULL;
3023d6dfbf8fSBarry Smith 
30240de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30250de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30260de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3027aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3028cff58d65SJunchao Zhang     if (oldmat->Mvctx) {
3029cff58d65SJunchao Zhang       a->Mvctx = oldmat->Mvctx;
3030cff58d65SJunchao Zhang       PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx));
3031cff58d65SJunchao Zhang     }
30329566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30339566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3034420957c1SBarry Smith   }
30359566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30368a729477SBarry Smith   *newmat = mat;
30373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30388a729477SBarry Smith }
3039416022c9SBarry Smith 
3040d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3041d71ae5a4SJacob Faibussowitsch {
304252f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
304352f91c60SVaclav Hapla 
304452f91c60SVaclav Hapla   PetscFunctionBegin;
304552f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
304652f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3047c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30489566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30499566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30509566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
305152f91c60SVaclav Hapla   if (isbinary) {
30529566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
305352f91c60SVaclav Hapla   } else if (ishdf5) {
305452f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30559566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
305652f91c60SVaclav Hapla #else
305752f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
305852f91c60SVaclav Hapla #endif
305952f91c60SVaclav Hapla   } else {
306098921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
306152f91c60SVaclav Hapla   }
30623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
306352f91c60SVaclav Hapla }
306452f91c60SVaclav Hapla 
3065d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3066d71ae5a4SJacob Faibussowitsch {
30673ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30683ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30693ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30708fb81238SShri Abhyankar 
30718fb81238SShri Abhyankar   PetscFunctionBegin;
30729566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30738fb81238SShri Abhyankar 
30743ea6fe3dSLisandro Dalcin   /* read in matrix header */
30759566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
307608401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30779371c9d4SSatish Balay   M  = header[1];
30789371c9d4SSatish Balay   N  = header[2];
30799371c9d4SSatish Balay   nz = header[3];
308008401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
308108401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
308208401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
308308ea439dSMark F. Adams 
30843ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30859566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30863ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30873ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30883ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30909566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30918fb81238SShri Abhyankar 
30923ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30939566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3094aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30958fb81238SShri Abhyankar 
30963ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30979566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30999566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
31009371c9d4SSatish Balay   rowidxs[0] = 0;
31019371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
31021690c2aeSBarry Smith   if (nz != PETSC_INT_MAX) {
3103462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
310408401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
310538b83642SBarry Smith   }
310638b83642SBarry Smith 
31073ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
31089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
31099566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
31109566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
31113ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
31129566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
31139566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
31149566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
31153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31168fb81238SShri Abhyankar }
31178fb81238SShri Abhyankar 
31183782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3119ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3120d71ae5a4SJacob Faibussowitsch {
31214aa3045dSJed Brown   IS          iscol_local;
3122c5e4d11fSDmitry Karpeev   PetscBool   isstride;
31239725ddffSPierre Jolivet   PetscMPIInt gisstride = 0;
31243782ecc7SHong Zhang 
31253782ecc7SHong Zhang   PetscFunctionBegin;
31263782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31279566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31283782ecc7SHong Zhang 
3129c5e4d11fSDmitry Karpeev   if (isstride) {
3130c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31319566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31329566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31339566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
31349725ddffSPierre Jolivet     if (mstart == start && mlen - mstart == len) gisstride = 1;
3135c5e4d11fSDmitry Karpeev   }
31363782ecc7SHong Zhang 
31379725ddffSPierre Jolivet   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3138c5e4d11fSDmitry Karpeev   if (gisstride) {
3139c5e4d11fSDmitry Karpeev     PetscInt N;
31409566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31419566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31429566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31439566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3144c5e4d11fSDmitry Karpeev   } else {
3145c5bfad50SMark F. Adams     PetscInt cbs;
31469566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31479566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31489566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3149b79d0421SJed Brown   }
31503782ecc7SHong Zhang 
31513782ecc7SHong Zhang   *isseq = iscol_local;
31523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3153c5e4d11fSDmitry Karpeev }
31548d2139bdSHong Zhang 
3155ddfdf956SHong Zhang /*
31569c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31579c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3158ddfdf956SHong Zhang 
3159ddfdf956SHong Zhang  Input Parameters:
316027430b45SBarry Smith +   mat - matrix
316127430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31629c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
316327430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3164ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
316527430b45SBarry Smith 
316627430b45SBarry Smith  Output Parameters:
316727430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
316827430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
316927430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
317027430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3171ddfdf956SHong Zhang  */
3172835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[])
3173d71ae5a4SJacob Faibussowitsch {
3174040216a4SHong Zhang   Vec             x, cmap;
3175040216a4SHong Zhang   const PetscInt *is_idx;
3176040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31779c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3178040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3179040216a4SHong Zhang   Mat             B    = a->B;
3180040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3181a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31828b3fa1f7SHong Zhang   MPI_Comm        comm;
31833a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31843782ecc7SHong Zhang 
31853782ecc7SHong Zhang   PetscFunctionBegin;
31869566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31879566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31888b3fa1f7SHong Zhang 
3189ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31909566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31919566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31929566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31939566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31940a351717SHong Zhang 
31959c988bcaSHong Zhang   /* Get start indices */
31969566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3197ddfdf956SHong Zhang   isstart -= ncols;
31989566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3199040216a4SHong Zhang 
32009566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
32019566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
32029566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
32039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3204ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
32058b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3206ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
32079c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
32088b3fa1f7SHong Zhang   }
32099566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
32109566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
32119566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
32128b3fa1f7SHong Zhang 
32139c988bcaSHong Zhang   /* Get iscol_d */
32149566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
32159566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
32169566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3217feb78a15SHong Zhang 
32189c988bcaSHong Zhang   /* Get isrow_d */
32199566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3220feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32219566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32229566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32239c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32249566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3225feb78a15SHong Zhang 
32269566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32279566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32289566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3229feb78a15SHong Zhang 
32309c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32319566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32329566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3233ddfdf956SHong Zhang 
32349566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
323507250d77SHong Zhang 
32369566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32379566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
323864efcef9SHong Zhang 
32399c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3240ddfdf956SHong Zhang   /* off-process column indices */
32419c988bcaSHong Zhang   count = 0;
32429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32439566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3244feb78a15SHong Zhang 
32459566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32469566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32478b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3248f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32499c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32501c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32511c645242SHong Zhang       count++;
32528b3fa1f7SHong Zhang     }
32538b3fa1f7SHong Zhang   }
32549566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32559566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
325607250d77SHong Zhang 
32579566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3258b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3259b6d9b4e0SHong Zhang 
32609566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32619c988bcaSHong Zhang   *garray = cmap1;
32629c988bcaSHong Zhang 
32639566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32649566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32659566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3267040216a4SHong Zhang }
3268040216a4SHong Zhang 
3269b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3270d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3271d71ae5a4SJacob Faibussowitsch {
3272b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32731fd43edeSHong Zhang   Mat         M = NULL;
32743b00a383SHong Zhang   MPI_Comm    comm;
3275b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32763b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3277b20e2604SHong Zhang   PetscInt    n;
32783b00a383SHong Zhang 
32793b00a383SHong Zhang   PetscFunctionBegin;
32809566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32813b00a383SHong Zhang 
32823b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3283b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32849566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
328528b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32863b00a383SHong Zhang 
32879566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
328828b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32893b00a383SHong Zhang 
32909566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
329128b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32923b00a383SHong Zhang 
3293b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3294b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32959566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32969566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
329748a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32989566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32999566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
33003b00a383SHong Zhang 
33013b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
3302835f2295SStefano Zampini     PetscInt *garray;
3303b20e2604SHong Zhang     PetscInt  BsubN;
33043b00a383SHong Zhang 
3305b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
33069566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
33073b00a383SHong Zhang 
3308b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
33099566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
33109566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
33113b00a383SHong Zhang 
33129c988bcaSHong Zhang     /* Create submatrix M */
33139566063dSJacob Faibussowitsch     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M));
33143b00a383SHong Zhang 
3315b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3316b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33177cfce09cSHong Zhang 
33189566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3319b20e2604SHong Zhang     n = asub->B->cmap->N;
3320b20e2604SHong Zhang     if (BsubN > n) {
3321c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33227cfce09cSHong Zhang       const PetscInt *idx;
33239c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33249566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33257cfce09cSHong Zhang 
33269566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33277cfce09cSHong Zhang       j = 0;
33289566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3329b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33307cfce09cSHong Zhang         if (j >= BsubN) break;
33319c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33327cfce09cSHong Zhang 
33339c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33347cfce09cSHong Zhang           idx_new[i] = idx[j++];
333598921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33367cfce09cSHong Zhang       }
33379566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33387cfce09cSHong Zhang 
33399566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33409566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33417cfce09cSHong Zhang 
3342b20e2604SHong Zhang     } else if (BsubN < n) {
334398921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3344b20e2604SHong Zhang     }
33457cfce09cSHong Zhang 
33469566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3347b20e2604SHong Zhang     *submat = M;
33483b00a383SHong Zhang 
3349e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33509566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33519566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33523b00a383SHong Zhang 
33539566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33549566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33553b00a383SHong Zhang 
33569566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33579566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33583b00a383SHong Zhang   }
33593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33603b00a383SHong Zhang }
33613b00a383SHong Zhang 
3362d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3363d71ae5a4SJacob Faibussowitsch {
33641358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33653782ecc7SHong Zhang   PetscInt  csize;
336618e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33674a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33683782ecc7SHong Zhang   MPI_Comm  comm;
33693782ecc7SHong Zhang 
33703782ecc7SHong Zhang   PetscFunctionBegin;
3371bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3372a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33738f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33749566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3375d5761cdaSHong Zhang     if (isrow_d) {
3376d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3377d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3378d5761cdaSHong Zhang     } else {
33799566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3380d5761cdaSHong Zhang       if (iscol_local) {
3381d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3382d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3383d5761cdaSHong Zhang       }
3384d5761cdaSHong Zhang     }
33858f69fa7bSHong Zhang   } else {
3386e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
338718e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33889566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33893782ecc7SHong Zhang     if (!n) {
339018e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33913782ecc7SHong Zhang     } else {
33929566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33939566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3394ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33958f69fa7bSHong Zhang     }
33963782ecc7SHong Zhang 
3397e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
339818e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33999566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
340018e627e3SHong Zhang     if (!n) {
340118e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
340218e627e3SHong Zhang     } else {
34039566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
34049566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
340518e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
340618e627e3SHong Zhang     }
340718e627e3SHong Zhang 
34089566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3409462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
341018e627e3SHong Zhang     sameRowDist = tsameDist[0];
341118e627e3SHong Zhang   }
341218e627e3SHong Zhang 
341318e627e3SHong Zhang   if (sameRowDist) {
3414b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
34153b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
34169566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34173ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3418b20e2604SHong Zhang     } else { /* sameRowDist */
34193b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34201358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34211358a193SHong Zhang         PetscBool sorted;
34229566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34239566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34249566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
342508401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34261358a193SHong Zhang 
34279566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34281358a193SHong Zhang         if (sorted) {
34291358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34309566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34313ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34323782ecc7SHong Zhang         }
34331358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
343448c0d076SHong Zhang         IS iscol_sub;
34359566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
343648c0d076SHong Zhang         if (iscol_sub) {
34379566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34383ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
343948c0d076SHong Zhang         }
34401358a193SHong Zhang       }
34411358a193SHong Zhang     }
34421358a193SHong Zhang   }
34433782ecc7SHong Zhang 
3444bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34453782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34469566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
344728b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34483782ecc7SHong Zhang   } else {
344948a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34501358a193SHong Zhang   }
34513782ecc7SHong Zhang 
34529566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34539566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34548f69fa7bSHong Zhang 
3455b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34569566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34579566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3458b79d0421SJed Brown   }
34593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34604aa3045dSJed Brown }
34614aa3045dSJed Brown 
3462feb78a15SHong Zhang /*@C
346311a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3464feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3465feb78a15SHong Zhang 
3466d083f849SBarry Smith   Collective
3467feb78a15SHong Zhang 
3468feb78a15SHong Zhang   Input Parameters:
3469feb78a15SHong Zhang + comm   - MPI communicator
3470feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3471b20e2604SHong Zhang . B      - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine
34722ef1f0ffSBarry Smith - garray - global index of `B` columns
3473feb78a15SHong Zhang 
3474feb78a15SHong Zhang   Output Parameter:
34752ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
347627430b45SBarry Smith 
3477feb78a15SHong Zhang   Level: advanced
3478feb78a15SHong Zhang 
3479feb78a15SHong Zhang   Notes:
348011a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
348111a5261eSBarry Smith 
34822ef1f0ffSBarry Smith   `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore.
3483feb78a15SHong Zhang 
34841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3485feb78a15SHong Zhang @*/
3486d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat)
3487d71ae5a4SJacob Faibussowitsch {
3488feb78a15SHong Zhang   Mat_MPIAIJ        *maij;
3489e489de8fSHong Zhang   Mat_SeqAIJ        *b  = (Mat_SeqAIJ *)B->data, *bnew;
3490a5348796SHong Zhang   PetscInt          *oi = b->i, *oj = b->j, i, nz, col;
3491ce496241SStefano Zampini   const PetscScalar *oa;
3492e489de8fSHong Zhang   Mat                Bnew;
3493feb78a15SHong Zhang   PetscInt           m, n, N;
34944ab4d6f4SRichard Tran Mills   MatType            mpi_mat_type;
3495feb78a15SHong Zhang 
3496feb78a15SHong Zhang   PetscFunctionBegin;
34979566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
34989566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
349908401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
350037a5e0faSPierre Jolivet   PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3501b6d9b4e0SHong Zhang   /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */
350208401ef6SPierre Jolivet   /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */
3503feb78a15SHong Zhang 
3504e489de8fSHong Zhang   /* Get global columns of mat */
3505462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm));
3506feb78a15SHong Zhang 
35079566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N));
35084ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
35094ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
35104ab4d6f4SRichard Tran Mills   PetscCall(MatSetType(*mat, mpi_mat_type));
35114ab4d6f4SRichard Tran Mills 
351237a5e0faSPierre Jolivet   if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs));
3513feb78a15SHong Zhang   maij = (Mat_MPIAIJ *)(*mat)->data;
3514feb78a15SHong Zhang 
3515feb78a15SHong Zhang   (*mat)->preallocated = PETSC_TRUE;
3516feb78a15SHong Zhang 
35179566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
35189566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
3519feb78a15SHong Zhang 
3520e489de8fSHong Zhang   /* Set A as diagonal portion of *mat */
3521feb78a15SHong Zhang   maij->A = A;
3522feb78a15SHong Zhang 
3523a5348796SHong Zhang   nz = oi[m];
3524a5348796SHong Zhang   for (i = 0; i < nz; i++) {
3525a5348796SHong Zhang     col   = oj[i];
3526a5348796SHong Zhang     oj[i] = garray[col];
3527feb78a15SHong Zhang   }
3528feb78a15SHong Zhang 
3529e489de8fSHong Zhang   /* Set Bnew as off-diagonal portion of *mat */
35309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &oa));
35319566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew));
35329566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &oa));
3533e489de8fSHong Zhang   bnew        = (Mat_SeqAIJ *)Bnew->data;
3534e489de8fSHong Zhang   bnew->maxnz = b->maxnz; /* allocated nonzeros of B */
3535e489de8fSHong Zhang   maij->B     = Bnew;
3536d5761cdaSHong Zhang 
353708401ef6SPierre Jolivet   PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N);
3538d5761cdaSHong Zhang 
3539d5761cdaSHong Zhang   b->free_a  = PETSC_FALSE;
3540d5761cdaSHong Zhang   b->free_ij = PETSC_FALSE;
35419566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&B));
3542d5761cdaSHong Zhang 
3543e489de8fSHong Zhang   bnew->free_a  = PETSC_TRUE;
3544e489de8fSHong Zhang   bnew->free_ij = PETSC_TRUE;
3545feb78a15SHong Zhang 
3546a5348796SHong Zhang   /* condense columns of maij->B */
35479566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
35489566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
35499566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
35509566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
35519566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3553feb78a15SHong Zhang }
3554feb78a15SHong Zhang 
3555ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35564aa3045dSJed Brown 
3557d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3558d71ae5a4SJacob Faibussowitsch {
355998b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
356085f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
356198b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35621fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
356398b658c4SHong Zhang   MatScalar      *aa;
356400e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3565a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
356698b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
356798b658c4SHong Zhang   IS              iscol_sub, iscmap;
356898b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
356918e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3570a31a438cSHong Zhang   MPI_Comm        comm;
35717e2c5f70SBarry Smith 
3572a0ff6018SBarry Smith   PetscFunctionBegin;
35739566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3574d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35759566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
357628b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35779566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3578d5761cdaSHong Zhang 
35799566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
358028b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3581d5761cdaSHong Zhang 
35829566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
358328b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3584d5761cdaSHong Zhang 
35859566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3586d5761cdaSHong Zhang 
3587d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35883b00a383SHong Zhang     PetscBool flg;
35893b00a383SHong Zhang 
35909566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35919566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3592bcae8d28SHong Zhang 
35933b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3594366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35959566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3596366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3597462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3598366a327dSHong Zhang     if (allcolumns) {
3599366a327dSHong Zhang       iscol_sub = iscol_local;
36009566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
36019566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3602366a327dSHong Zhang 
36033b00a383SHong Zhang     } else {
36041358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3605244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
36069566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
36079566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
36089566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
36098d2139bdSHong Zhang       count = 0;
3610a31a438cSHong Zhang       k     = 0;
3611a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3612a31a438cSHong Zhang         j = is_idx[i];
3613a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3614a31a438cSHong Zhang           /* diagonal part of mat */
36158d2139bdSHong Zhang           idx[count]     = j;
3616366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36174a3daf6eSHong Zhang         } else if (Bn) {
3618a31a438cSHong Zhang           /* off-diagonal part of mat */
3619a31a438cSHong Zhang           if (j == garray[k]) {
36208d2139bdSHong Zhang             idx[count]     = j;
3621a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3622a31a438cSHong Zhang           } else if (j > garray[k]) {
3623a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3624a31a438cSHong Zhang             if (j == garray[k]) {
3625a31a438cSHong Zhang               idx[count]     = j;
3626a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36278d2139bdSHong Zhang             }
36288d2139bdSHong Zhang           }
36298d2139bdSHong Zhang         }
36308d2139bdSHong Zhang       }
36319566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36328d2139bdSHong Zhang 
36339566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36349566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36359566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3636b6d9b4e0SHong Zhang 
36379566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3638a31a438cSHong Zhang     }
36398b3fa1f7SHong Zhang 
36403b00a383SHong Zhang     /* (3) Create sequential Msub */
36419566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3642d5761cdaSHong Zhang   }
36438d2139bdSHong Zhang 
36449566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
364557508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Msub->data;
364698b658c4SHong Zhang   ii  = aij->i;
36479566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3648a0ff6018SBarry Smith 
3649a0ff6018SBarry Smith   /*
3650a0ff6018SBarry Smith       m - number of local rows
3651a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3652a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3653a0ff6018SBarry Smith   */
36549566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
365598b658c4SHong Zhang 
36563b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36573b00a383SHong Zhang     /* (4) Create parallel newmat */
365898b658c4SHong Zhang     PetscMPIInt rank, size;
3659bcae8d28SHong Zhang     PetscInt    csize;
366098b658c4SHong Zhang 
36619566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36629566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
366300e6dbe6SBarry Smith 
3664a0ff6018SBarry Smith     /*
366500e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
366600e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3667a0ff6018SBarry Smith     */
366800e6dbe6SBarry Smith 
366900e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36709566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36716a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36729566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3673a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3674e2c4fddaSBarry Smith         nlocal = m;
36756a6a5d1dSBarry Smith       } else {
3676a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3677ab50ec6bSBarry Smith       }
3678ab50ec6bSBarry Smith     } else {
36796a6a5d1dSBarry Smith       nlocal = csize;
36806a6a5d1dSBarry Smith     }
36819566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
368200e6dbe6SBarry Smith     rstart = rend - nlocal;
3683aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
368400e6dbe6SBarry Smith 
368500e6dbe6SBarry Smith     /* next, compute all the lengths */
368698b658c4SHong Zhang     jj = aij->j;
36879566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
368800e6dbe6SBarry Smith     olens = dlens + m;
368900e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
369000e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
369100e6dbe6SBarry Smith       olen = 0;
369200e6dbe6SBarry Smith       dlen = 0;
369300e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
369415b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
369500e6dbe6SBarry Smith         else dlen++;
369600e6dbe6SBarry Smith         jj++;
369700e6dbe6SBarry Smith       }
369800e6dbe6SBarry Smith       olens[i] = olen;
369900e6dbe6SBarry Smith       dlens[i] = dlen;
370000e6dbe6SBarry Smith     }
3701b6d9b4e0SHong Zhang 
37029566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
37039566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
370498b658c4SHong Zhang 
37059566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
37069566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
37079566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
37089566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
37099566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
37109566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3711d5761cdaSHong Zhang 
3712d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3713a0ff6018SBarry Smith     M = *newmat;
37149566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
371508401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
37169566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3717c48de900SBarry Smith     /*
3718c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3719c48de900SBarry Smith        rather than the slower MatSetValues().
3720c48de900SBarry Smith     */
3721c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3722c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3723a0ff6018SBarry Smith   }
3724548ecf4dSHong Zhang 
37253b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37279566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
372898b658c4SHong Zhang 
372998b658c4SHong Zhang   jj = aij->j;
37309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3731a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3732a0ff6018SBarry Smith     row = rstart + i;
373300e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
373415b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37359566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37369371c9d4SSatish Balay     jj += nz;
37379371c9d4SSatish Balay     aa += nz;
3738a0ff6018SBarry Smith   }
37399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37409566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3741a0ff6018SBarry Smith 
37429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3744fee21e36SBarry Smith 
37459566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
374698b658c4SHong Zhang 
374798b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3748fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37493b00a383SHong Zhang     *newmat = M;
3750f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37519566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
375298b658c4SHong Zhang 
3753f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37549566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
375598b658c4SHong Zhang 
3756f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37579566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3758bcae8d28SHong Zhang 
3759bcae8d28SHong Zhang     if (iscol_local) {
3760f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37619566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3762bcae8d28SHong Zhang     }
376398b658c4SHong Zhang   }
37643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3765a0ff6018SBarry Smith }
3766273d9f13SBarry Smith 
3767df40acb1SHong Zhang /*
3768df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3769df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3770df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3771df40acb1SHong Zhang 
377211a5261eSBarry Smith   This requires a sequential iscol with all indices.
3773df40acb1SHong Zhang */
3774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3775d71ae5a4SJacob Faibussowitsch {
3776df40acb1SHong Zhang   PetscMPIInt rank, size;
3777df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3778df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3779df40acb1SHong Zhang   Mat         M, Mreuse;
378098b658c4SHong Zhang   MatScalar  *aa, *vwork;
3781df40acb1SHong Zhang   MPI_Comm    comm;
3782df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37830b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3784df40acb1SHong Zhang 
3785df40acb1SHong Zhang   PetscFunctionBegin;
37869566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37879566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37889566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3789df40acb1SHong Zhang 
37900b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37919566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37929566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37930b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3794462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37950b27a90eSHong Zhang 
3796df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37979566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
379828b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37999566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3800df40acb1SHong Zhang   } else {
38019566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3802df40acb1SHong Zhang   }
3803df40acb1SHong Zhang 
3804df40acb1SHong Zhang   /*
3805df40acb1SHong Zhang       m - number of local rows
3806df40acb1SHong Zhang       n - number of columns (same on all processors)
3807df40acb1SHong Zhang       rstart - first row in new global matrix generated
3808df40acb1SHong Zhang   */
38099566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
38109566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3811df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
381257508eceSPierre Jolivet     aij = (Mat_SeqAIJ *)Mreuse->data;
3813df40acb1SHong Zhang     ii  = aij->i;
3814df40acb1SHong Zhang     jj  = aij->j;
3815df40acb1SHong Zhang 
3816df40acb1SHong Zhang     /*
3817df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3818df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3819df40acb1SHong Zhang     */
3820df40acb1SHong Zhang 
3821df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3822df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38239566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3824df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3825df40acb1SHong Zhang         nlocal = m;
3826df40acb1SHong Zhang       } else {
3827df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3828df40acb1SHong Zhang       }
3829df40acb1SHong Zhang     } else {
3830df40acb1SHong Zhang       nlocal = csize;
3831df40acb1SHong Zhang     }
38329566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3833df40acb1SHong Zhang     rstart = rend - nlocal;
3834aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3835df40acb1SHong Zhang 
3836df40acb1SHong Zhang     /* next, compute all the lengths */
38379566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3838df40acb1SHong Zhang     olens = dlens + m;
3839df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3840df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3841df40acb1SHong Zhang       olen = 0;
3842df40acb1SHong Zhang       dlen = 0;
3843df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3844df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3845df40acb1SHong Zhang         else dlen++;
3846df40acb1SHong Zhang         jj++;
3847df40acb1SHong Zhang       }
3848df40acb1SHong Zhang       olens[i] = olen;
3849df40acb1SHong Zhang       dlens[i] = dlen;
3850df40acb1SHong Zhang     }
38519566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38529566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38539566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38549566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38559566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38569566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3857df40acb1SHong Zhang   } else {
3858df40acb1SHong Zhang     PetscInt ml, nl;
3859df40acb1SHong Zhang 
3860df40acb1SHong Zhang     M = *newmat;
38619566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
386208401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38639566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3864df40acb1SHong Zhang     /*
3865df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3866df40acb1SHong Zhang        rather than the slower MatSetValues().
3867df40acb1SHong Zhang     */
3868df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3869df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3870df40acb1SHong Zhang   }
38719566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
387257508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Mreuse->data;
3873df40acb1SHong Zhang   ii  = aij->i;
3874df40acb1SHong Zhang   jj  = aij->j;
38752e5835c6SStefano Zampini 
38762e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38779566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3878df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3879df40acb1SHong Zhang     row   = rstart + i;
3880df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38819371c9d4SSatish Balay     cwork = jj;
38828e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38839371c9d4SSatish Balay     vwork = aa;
38848e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38859566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3886df40acb1SHong Zhang   }
38879566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3888df40acb1SHong Zhang 
38899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3891df40acb1SHong Zhang   *newmat = M;
3892df40acb1SHong Zhang 
3893df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3894df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38959566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38969566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3897df40acb1SHong Zhang   }
38983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3899df40acb1SHong Zhang }
3900df40acb1SHong Zhang 
3901ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3902d71ae5a4SJacob Faibussowitsch {
39036a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
39049f0612e4SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart;
3905ccd8e176SBarry Smith   const PetscInt *JJ;
3906eeb24464SBarry Smith   PetscBool       nooffprocentries;
39076a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3908ccd8e176SBarry Smith 
3909ccd8e176SBarry Smith   PetscFunctionBegin;
39109566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
39119566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3912d0f46423SBarry Smith   m       = B->rmap->n;
3913d0f46423SBarry Smith   cstart  = B->cmap->rstart;
3914d0f46423SBarry Smith   cend    = B->cmap->rend;
3915d0f46423SBarry Smith   rstart  = B->rmap->rstart;
39169f0612e4SBarry Smith   irstart = Ii[0];
3917899cda47SBarry Smith 
39189566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3919ccd8e176SBarry Smith 
392076bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39218f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3922ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39239f0612e4SBarry Smith       JJ  = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
392408401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
392508401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
392608401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3927ecc77c7aSBarry Smith     }
392876bd3646SJed Brown   }
3929ecc77c7aSBarry Smith 
39308f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3931b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39329f0612e4SBarry Smith     JJ      = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
3933ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3934ccd8e176SBarry Smith     d       = 0;
39350daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39360daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3937ccd8e176SBarry Smith     }
3938ccd8e176SBarry Smith     d_nnz[i] = d;
3939ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3940ccd8e176SBarry Smith   }
39419566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39429566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3943ccd8e176SBarry Smith 
39448f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3945ccd8e176SBarry Smith     ii = i + rstart;
39469f0612e4SBarry Smith     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES));
3947ccd8e176SBarry Smith   }
3948eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3949eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3952eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3953ccd8e176SBarry Smith 
39546a3d2595SBarry Smith   /* count number of entries below block diagonal */
39556a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39566a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39576a3d2595SBarry Smith   Aij->ld = ld;
39586a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39596a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39606a3d2595SBarry Smith     j   = 0;
3961ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39626a3d2595SBarry Smith     ld[i] = j;
3963720a2405SPierre Jolivet     if (J) J += nnz;
39646a3d2595SBarry Smith   }
39656a3d2595SBarry Smith 
39669566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3968ccd8e176SBarry Smith }
3969ccd8e176SBarry Smith 
39701eea217eSSatish Balay /*@
397111a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3972ccd8e176SBarry Smith   (the default parallel PETSc format).
3973ccd8e176SBarry Smith 
3974d083f849SBarry Smith   Collective
3975ccd8e176SBarry Smith 
3976ccd8e176SBarry Smith   Input Parameters:
3977a1661176SMatthew Knepley + B - the matrix
3978d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
3979d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
3980ccd8e176SBarry Smith - v - optional values in the matrix
3981ccd8e176SBarry Smith 
3982ccd8e176SBarry Smith   Level: developer
3983ccd8e176SBarry Smith 
398412251496SSatish Balay   Notes:
39852ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39862ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
398711a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
398812251496SSatish Balay 
39892ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
399012251496SSatish Balay 
3991a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3992a4bd8bc0SBarry Smith 
3993a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3994a4bd8bc0SBarry Smith 
3995a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3996a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3997a4bd8bc0SBarry Smith 
399812251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
399912251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
4000c5e4d11fSDmitry Karpeev   as shown
400127430b45SBarry Smith .vb
400227430b45SBarry Smith         1 0 0
400327430b45SBarry Smith         2 0 3     P0
400427430b45SBarry Smith        -------
400527430b45SBarry Smith         4 5 6     P1
400627430b45SBarry Smith 
400727430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
400827430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
400927430b45SBarry Smith         j =  {0,0,2}  [size = 3]
401027430b45SBarry Smith         v =  {1,2,3}  [size = 3]
401127430b45SBarry Smith 
401227430b45SBarry Smith      Process1 [P1] rows_owned=[2]
401327430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
401427430b45SBarry Smith         j =  {0,1,2}  [size = 3]
401527430b45SBarry Smith         v =  {4,5,6}  [size = 3]
401627430b45SBarry Smith .ve
401712251496SSatish Balay 
4018fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4019a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4020ccd8e176SBarry Smith @*/
4021d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4022d71ae5a4SJacob Faibussowitsch {
4023ccd8e176SBarry Smith   PetscFunctionBegin;
4024cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4026ccd8e176SBarry Smith }
4027ccd8e176SBarry Smith 
40285d83a8b1SBarry Smith /*@
402911a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4030273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4031273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
403220f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4033273d9f13SBarry Smith 
4034d083f849SBarry Smith   Collective
4035273d9f13SBarry Smith 
4036273d9f13SBarry Smith   Input Parameters:
40371c4f3114SJed Brown + B     - the matrix
4038273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4039273d9f13SBarry Smith            (same value is used for all local rows)
4040273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4041273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40422ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4043273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40443287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40453287b5eaSJed Brown            the diagonal entry even if it is zero.
4046273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4047273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4048273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4049273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40502ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4051273d9f13SBarry Smith            structure. The size of this array is equal to the number
4052273d9f13SBarry Smith            of local rows, i.e 'm'.
4053273d9f13SBarry Smith 
40542920cce0SJacob Faibussowitsch   Example Usage:
405527430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
405627430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
405727430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
405827430b45SBarry Smith   as follows
405927430b45SBarry Smith 
406027430b45SBarry Smith .vb
406127430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
406227430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
406327430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
406427430b45SBarry Smith     -------------------------------------
406527430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
406627430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
406727430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
406827430b45SBarry Smith     -------------------------------------
406927430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
407027430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
407127430b45SBarry Smith .ve
407227430b45SBarry Smith 
407327430b45SBarry Smith   This can be represented as a collection of submatrices as
407427430b45SBarry Smith .vb
407527430b45SBarry Smith       A B C
407627430b45SBarry Smith       D E F
407727430b45SBarry Smith       G H I
407827430b45SBarry Smith .ve
407927430b45SBarry Smith 
408027430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
408127430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
408227430b45SBarry Smith 
408327430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
408427430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
408527430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
408627430b45SBarry Smith 
408727430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
408827430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
408927430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
409027430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
409127430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
40925163b989SNuno Nobre   matrix, and [DF] as another `MATSEQAIJ` matrix.
409327430b45SBarry Smith 
409420f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
40955163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
40965163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
40975163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
40985163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
409920f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
410027430b45SBarry Smith .vb
410127430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
410227430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
410327430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
410427430b45SBarry Smith .ve
410520f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
410627430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
410727430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
410827430b45SBarry Smith   34 values.
410927430b45SBarry Smith 
411020f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
411127430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
411220f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
411327430b45SBarry Smith .vb
411427430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
411527430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
411627430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
411727430b45SBarry Smith .ve
411827430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
411927430b45SBarry Smith   hence pre-allocation is perfect.
412027430b45SBarry Smith 
412127430b45SBarry Smith   Level: intermediate
412227430b45SBarry Smith 
412327430b45SBarry Smith   Notes:
412449a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
412549a6f317SBarry Smith 
412627430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41270598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4128651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4129273d9f13SBarry Smith 
4130273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4131273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4132273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4133273d9f13SBarry Smith 
4134273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4135a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4136a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4137a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4138a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4139a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4140a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4141a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4142a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4143273d9f13SBarry Smith 
41442ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4145273d9f13SBarry Smith 
414627430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4147aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
414827430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4149aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4150aa95bbe8SBarry Smith 
41511cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4152a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4153273d9f13SBarry Smith @*/
4154d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4155d71ae5a4SJacob Faibussowitsch {
4156273d9f13SBarry Smith   PetscFunctionBegin;
41576ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41586ba663aaSJed Brown   PetscValidType(B, 1);
4159cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4161273d9f13SBarry Smith }
4162273d9f13SBarry Smith 
416358d36128SBarry Smith /*@
416411a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41658f8f2f0dSBarry Smith   CSR format for the local rows.
41662fb0ec9aSBarry Smith 
4167d083f849SBarry Smith   Collective
41682fb0ec9aSBarry Smith 
41692fb0ec9aSBarry Smith   Input Parameters:
41702fb0ec9aSBarry Smith + comm - MPI communicator
417111a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41722fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4173d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4174d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4175d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4176d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41775693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41785693b835SJunchao Zhang . j    - global column indices
4179f1f2ae84SBarry Smith - a    - optional matrix values
41802fb0ec9aSBarry Smith 
41812fb0ec9aSBarry Smith   Output Parameter:
41822fb0ec9aSBarry Smith . mat - the matrix
418303bfb495SBarry Smith 
41842fb0ec9aSBarry Smith   Level: intermediate
41852fb0ec9aSBarry Smith 
41862fb0ec9aSBarry Smith   Notes:
41872ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
4188d4c8cc39SPierre Jolivet   thus you CANNOT change the matrix entries by changing the values of `a[]` after you have
4189d4c8cc39SPierre Jolivet   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41902fb0ec9aSBarry Smith 
41912ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
419212251496SSatish Balay 
41935693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4194a4bd8bc0SBarry Smith 
41955693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4196a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4197a4bd8bc0SBarry Smith 
419812251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
4199d4c8cc39SPierre Jolivet   row-major ordering, i.e., for the following matrix, the input data expected is
4200c5e4d11fSDmitry Karpeev   as shown
42012ef1f0ffSBarry Smith .vb
42022ef1f0ffSBarry Smith         1 0 0
42032ef1f0ffSBarry Smith         2 0 3     P0
42042ef1f0ffSBarry Smith        -------
42052ef1f0ffSBarry Smith         4 5 6     P1
42068f8f2f0dSBarry Smith 
42072ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
42082ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
42092ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
42102ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
42112fb0ec9aSBarry Smith 
42122ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
42132ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
42142ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
42152ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
42162ef1f0ffSBarry Smith .ve
42172ef1f0ffSBarry Smith 
4218d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
42195693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42202fb0ec9aSBarry Smith @*/
4221d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4222d71ae5a4SJacob Faibussowitsch {
42232fb0ec9aSBarry Smith   PetscFunctionBegin;
422408401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
422508401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42269566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42279566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42289566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42299566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42309566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42322fb0ec9aSBarry Smith }
42332fb0ec9aSBarry Smith 
42348f8f2f0dSBarry Smith /*@
423511a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42362ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42372ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42386a3d2595SBarry Smith 
42396a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42408f8f2f0dSBarry Smith 
42418f8f2f0dSBarry Smith   Collective
42428f8f2f0dSBarry Smith 
42438f8f2f0dSBarry Smith   Input Parameters:
42448f8f2f0dSBarry Smith + mat - the matrix
424511a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42468f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
424711a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42488f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
424911a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
425011a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42518f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42528f8f2f0dSBarry Smith . J   - column indices
42538f8f2f0dSBarry Smith - v   - matrix values
42548f8f2f0dSBarry Smith 
42552ef1f0ffSBarry Smith   Level: deprecated
42568f8f2f0dSBarry Smith 
42571cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4258a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42598f8f2f0dSBarry Smith @*/
4260d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4261d71ae5a4SJacob Faibussowitsch {
42626a3d2595SBarry Smith   PetscInt        nnz, i;
42638f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42648f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4265fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4266fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42678f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42686a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42696a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42708f8f2f0dSBarry Smith 
42718f8f2f0dSBarry Smith   PetscFunctionBegin;
4272aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
427308401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
427408401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
427508401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42768f8f2f0dSBarry Smith 
42779566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42789566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42798f8f2f0dSBarry Smith 
42808f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42814c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42824c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42834c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42844c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42854c17f1ccSBarry Smith       }
42864c17f1ccSBarry Smith     }
42878f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42888f8f2f0dSBarry Smith     Iii = Ii[i];
42898f8f2f0dSBarry Smith     ldi = ld[i];
42908f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42919566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42929566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42939566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42948f8f2f0dSBarry Smith     ad += md;
42958f8f2f0dSBarry Smith     ao += nnz - md;
42968f8f2f0dSBarry Smith   }
42978f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42988f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42999566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43009566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43019566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43029566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43039566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43059566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43068f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
43073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43088f8f2f0dSBarry Smith }
43098f8f2f0dSBarry Smith 
43106a3d2595SBarry Smith /*@
431111a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
43126a3d2595SBarry Smith 
43136a3d2595SBarry Smith   Collective
43146a3d2595SBarry Smith 
43156a3d2595SBarry Smith   Input Parameters:
43166a3d2595SBarry Smith + mat - the matrix
43176a3d2595SBarry Smith - v   - matrix values, stored by row
43186a3d2595SBarry Smith 
43196a3d2595SBarry Smith   Level: intermediate
43206a3d2595SBarry Smith 
4321a4bd8bc0SBarry Smith   Notes:
43226a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43236a3d2595SBarry Smith 
4324a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4325a4bd8bc0SBarry Smith 
43261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4327a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43286a3d2595SBarry Smith @*/
4329d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4330d71ae5a4SJacob Faibussowitsch {
43316a3d2595SBarry Smith   PetscInt        nnz, i, m;
43326a3d2595SBarry Smith   PetscBool       nooffprocentries;
43336a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43346a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43356a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43366a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43376a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43386a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43396a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43406a3d2595SBarry Smith 
43416a3d2595SBarry Smith   PetscFunctionBegin;
43426a3d2595SBarry Smith   m = mat->rmap->n;
43436a3d2595SBarry Smith 
43446a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43456a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43466a3d2595SBarry Smith   Iii = 0;
43476a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43486a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43496a3d2595SBarry Smith     ldi = ld[i];
43506a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43516a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43526a3d2595SBarry Smith     ad += md;
4353810441c8SPierre Jolivet     if (ao) {
4354810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4355810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43566a3d2595SBarry Smith       ao += nnz - md;
4357810441c8SPierre Jolivet     }
43586a3d2595SBarry Smith     Iii += nnz;
43596a3d2595SBarry Smith   }
43606a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43616a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43626a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43636a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43646a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43656a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43666a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43676a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43686a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43696a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43716a3d2595SBarry Smith }
43726a3d2595SBarry Smith 
43735d83a8b1SBarry Smith /*@
437411a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4375273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4376273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43772ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4378273d9f13SBarry Smith 
4379d083f849SBarry Smith   Collective
4380273d9f13SBarry Smith 
4381273d9f13SBarry Smith   Input Parameters:
4382273d9f13SBarry Smith + comm  - MPI communicator
438311a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4384273d9f13SBarry Smith           This value should be the same as the local size used in creating the
4385273d9f13SBarry Smith           y vector for the matrix-vector product y = Ax.
4386273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
438745f401ebSJose E. Roman           x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4388273d9f13SBarry Smith           calculated if N is given) For square matrices n is almost always m.
438911a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
439011a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4391273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4392273d9f13SBarry Smith           (same value is used for all local rows)
4393273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4394273d9f13SBarry Smith           DIAGONAL portion of the local submatrix (possibly different for each row)
43952ef1f0ffSBarry Smith           or `NULL`, if `d_nz` is used to specify the nonzero structure.
4396273d9f13SBarry Smith           The size of this array is equal to the number of local rows, i.e 'm'.
4397273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4398273d9f13SBarry Smith           submatrix (same value is used for all local rows).
4399273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4400273d9f13SBarry Smith           OFF-DIAGONAL portion of the local submatrix (possibly different for
44012ef1f0ffSBarry Smith           each row) or `NULL`, if `o_nz` is used to specify the nonzero
4402273d9f13SBarry Smith           structure. The size of this array is equal to the number
4403273d9f13SBarry Smith           of local rows, i.e 'm'.
4404273d9f13SBarry Smith 
4405273d9f13SBarry Smith   Output Parameter:
4406273d9f13SBarry Smith . A - the matrix
4407273d9f13SBarry Smith 
440827430b45SBarry Smith   Options Database Keys:
440927430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
441027430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
441127430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
4412727bdf9bSBarry Smith                                       See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter`
4413727bdf9bSBarry Smith                                       to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
441427430b45SBarry Smith 
44152ef1f0ffSBarry Smith   Level: intermediate
44162ef1f0ffSBarry Smith 
441727430b45SBarry Smith   Notes:
441877433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4419f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
442011a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4421175b88e8SBarry Smith 
442249a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
442349a6f317SBarry Smith 
44242ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44252ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4426273d9f13SBarry Smith   storage requirements for this matrix.
4427273d9f13SBarry Smith 
442811a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4429273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4430273d9f13SBarry Smith   that argument.
4431273d9f13SBarry Smith 
4432727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
4433727bdf9bSBarry Smith   `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
4434727bdf9bSBarry Smith 
4435273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4436273d9f13SBarry Smith   (possibly both).
4437273d9f13SBarry Smith 
443833a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
4439727bdf9bSBarry Smith   first `m0` rows belong to process 0, the next `m1` rows belong to
4440727bdf9bSBarry Smith   process 1, the next `m2` rows belong to process 2, etc., where
4441727bdf9bSBarry Smith   `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores
444233a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4443273d9f13SBarry Smith 
444433a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
444533a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4446df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
444733a7c187SSatish Balay 
444833a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
444933a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
445033a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
445133a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
445233a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
445333a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
44540b4b7b1cSBarry Smith   illustrates this concept. The two matrices, the DIAGONAL portion and
44550b4b7b1cSBarry Smith   the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices.
445633a7c187SSatish Balay 
445733a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
445833a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
445933a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
446033a7c187SSatish Balay   local matrix (a rectangular submatrix).
4461273d9f13SBarry Smith 
44622ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4463273d9f13SBarry Smith 
446497d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44652ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4466da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4467da57b5cdSKarl Rupp .vb
44682ef1f0ffSBarry Smith   MatCreate(..., &A);
44692ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44702ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44712ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4472da57b5cdSKarl Rupp .ve
447397d05335SKris Buschelman 
4474273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4475273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4476273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4477273d9f13SBarry Smith 
44782920cce0SJacob Faibussowitsch   Example Usage:
4479273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4480273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4481273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4482efc377ccSKarl Rupp   as follows
4483273d9f13SBarry Smith 
4484273d9f13SBarry Smith .vb
4485273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4486273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4487273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4488273d9f13SBarry Smith     -------------------------------------
4489273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4490273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4491273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4492273d9f13SBarry Smith     -------------------------------------
4493273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4494273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4495273d9f13SBarry Smith .ve
4496273d9f13SBarry Smith 
4497da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4498273d9f13SBarry Smith 
4499273d9f13SBarry Smith .vb
4500273d9f13SBarry Smith       A B C
4501273d9f13SBarry Smith       D E F
4502273d9f13SBarry Smith       G H I
4503273d9f13SBarry Smith .ve
4504273d9f13SBarry Smith 
4505273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4506273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4507273d9f13SBarry Smith 
4508273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4509273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4510273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4511273d9f13SBarry Smith 
4512273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4513273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4514273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4515273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
451627430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
45175163b989SNuno Nobre   matrix, and [DF] as another SeqAIJ matrix.
4518273d9f13SBarry Smith 
45192ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45205163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
45215163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
45225163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
45235163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45242ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4525273d9f13SBarry Smith .vb
452627430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
452727430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
452827430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4529273d9f13SBarry Smith .ve
45302ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4531273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4532273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4533273d9f13SBarry Smith   34 values.
4534273d9f13SBarry Smith 
45352ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4536a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4537da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4538273d9f13SBarry Smith .vb
453927430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
454027430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
454127430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4542273d9f13SBarry Smith .ve
4543273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4544273d9f13SBarry Smith   hence pre-allocation is perfect.
4545273d9f13SBarry Smith 
45461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4547727bdf9bSBarry Smith           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`,
4548727bdf9bSBarry Smith           `MatGetOwnershipRangesColumn()`, `PetscLayout`
4549273d9f13SBarry Smith @*/
4550d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4551d71ae5a4SJacob Faibussowitsch {
4552b1d57f15SBarry Smith   PetscMPIInt size;
4553273d9f13SBarry Smith 
4554273d9f13SBarry Smith   PetscFunctionBegin;
45559566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45569566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45579566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4558273d9f13SBarry Smith   if (size > 1) {
45599566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45609566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4561273d9f13SBarry Smith   } else {
45629566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45639566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4564273d9f13SBarry Smith   }
45653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4566273d9f13SBarry Smith }
4567195d93cdSBarry Smith 
4568127ca0efSMatthew Knepley /*@C
45690ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4570127ca0efSMatthew Knepley 
45712ef1f0ffSBarry Smith   Not Collective
4572127ca0efSMatthew Knepley 
4573127ca0efSMatthew Knepley   Input Parameter:
457411a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4575127ca0efSMatthew Knepley 
4576127ca0efSMatthew Knepley   Output Parameters:
457711a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
457811a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
45792ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4580127ca0efSMatthew Knepley 
45810ab4885dSBarry Smith   Level: intermediate
45820ab4885dSBarry Smith 
458311a5261eSBarry Smith   Note:
45842ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
45852ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
45862ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4587127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4588127ca0efSMatthew Knepley 
4589*ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4590127ca0efSMatthew Knepley @*/
4591d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4592d71ae5a4SJacob Faibussowitsch {
4593195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
459404cf37c7SBarry Smith   PetscBool   flg;
4595b1d57f15SBarry Smith 
4596195d93cdSBarry Smith   PetscFunctionBegin;
45979566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
459828b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
459921e72a00SBarry Smith   if (Ad) *Ad = a->A;
460021e72a00SBarry Smith   if (Ao) *Ao = a->B;
460121e72a00SBarry Smith   if (colmap) *colmap = a->garray;
46023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4603195d93cdSBarry Smith }
4604a2243be0SBarry Smith 
4605d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4606d71ae5a4SJacob Faibussowitsch {
4607110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
46089b8102ccSHong Zhang   PetscInt    *indx;
4609110bb6e1SHong Zhang   PetscScalar *values;
4610421ddf4dSJunchao Zhang   MatType      rootType;
46119b8102ccSHong Zhang 
46129b8102ccSHong Zhang   PetscFunctionBegin;
46139566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4614110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4615110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4616110bb6e1SHong Zhang 
461748a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4618a22543b6SHong Zhang     /* Check sum(n) = N */
4619462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
462008401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4621a22543b6SHong Zhang 
46229566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46239b8102ccSHong Zhang     rstart -= m;
46249b8102ccSHong Zhang 
4625d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46269b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46279566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46289566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46299566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46309b8102ccSHong Zhang     }
46319b8102ccSHong Zhang 
46329566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46339566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46349566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46359566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46369566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46379566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46389566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46399566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4640d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46419566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46429b8102ccSHong Zhang   }
46439b8102ccSHong Zhang 
4644110bb6e1SHong Zhang   /* numeric phase */
46459566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46469b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46479566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46489b8102ccSHong Zhang     Ii = i + rstart;
46499566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46509566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46519b8102ccSHong Zhang   }
46529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46539566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4655c5d6d63eSBarry Smith }
4656c5d6d63eSBarry Smith 
465749abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data)
4658d71ae5a4SJacob Faibussowitsch {
465949abdd8aSBarry Smith   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data;
466051a7d1a8SHong Zhang 
466151a7d1a8SHong Zhang   PetscFunctionBegin;
46623ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
46639566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
46649566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
46659566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
46669566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
46679566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
46689566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
46699566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
46709566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
46719566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
46729566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
46739566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
46749566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
46759566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
46769566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
46773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
467851a7d1a8SHong Zhang }
467951a7d1a8SHong Zhang 
4680c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4681c6db04a5SJed Brown #include <petscbt.h>
46824ebed01fSBarry Smith 
4683d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4684d71ae5a4SJacob Faibussowitsch {
4685ce94432eSBarry Smith   MPI_Comm             comm;
468655d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4687b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
46886497c311SBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m;
46896497c311SBarry Smith   PetscMPIInt          proc, k;
4690b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
46916497c311SBarry Smith   PetscInt             anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4692b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
469355d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
469455d1abb9SHong Zhang   MPI_Status          *status;
4695fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4696dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
469755d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4698776b82aeSLisandro Dalcin   PetscContainer       container;
469955d1abb9SHong Zhang 
470055d1abb9SHong Zhang   PetscFunctionBegin;
47019566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
47029566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
47033c2c1871SHong Zhang 
47049566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
470655d1abb9SHong Zhang 
47079566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
470828b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
47099566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
47109566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4711fff043a9SJunchao Zhang   aa = a_a;
4712bf0cc555SLisandro Dalcin 
471355d1abb9SHong Zhang   bi     = merge->bi;
471455d1abb9SHong Zhang   bj     = merge->bj;
471555d1abb9SHong Zhang   buf_ri = merge->buf_ri;
471655d1abb9SHong Zhang   buf_rj = merge->buf_rj;
471755d1abb9SHong Zhang 
47189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47197a2fc3feSBarry Smith   owners = merge->rowmap->range;
472055d1abb9SHong Zhang   len_s  = merge->len_s;
472155d1abb9SHong Zhang 
472255d1abb9SHong Zhang   /* send and recv matrix values */
47239566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47249566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
472555d1abb9SHong Zhang 
47269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
472755d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
472855d1abb9SHong Zhang     if (!len_s[proc]) continue;
472955d1abb9SHong Zhang     i = owners[proc];
47306497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
473155d1abb9SHong Zhang     k++;
473255d1abb9SHong Zhang   }
473355d1abb9SHong Zhang 
47349566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47359566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47369566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
473755d1abb9SHong Zhang 
47389566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47399566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
474055d1abb9SHong Zhang 
474155d1abb9SHong Zhang   /* insert mat values of mpimat */
47429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47439566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
474455d1abb9SHong Zhang 
474555d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
474655d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4747f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
474855d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4749a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
475055d1abb9SHong Zhang   }
475155d1abb9SHong Zhang 
475255d1abb9SHong Zhang   /* set values of ba */
47537a2fc3feSBarry Smith   m = merge->rowmap->n;
475455d1abb9SHong Zhang   for (i = 0; i < m; i++) {
475555d1abb9SHong Zhang     arow = owners[rank] + i;
475655d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
475755d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47589566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
475955d1abb9SHong Zhang 
476055d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
476155d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
476255d1abb9SHong Zhang     aj     = a->j + ai[arow];
4763fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
476455d1abb9SHong Zhang     nextaj = 0;
476555d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
476655d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
476755d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
476855d1abb9SHong Zhang       }
476955d1abb9SHong Zhang     }
477055d1abb9SHong Zhang 
477155d1abb9SHong Zhang     /* add received vals into ba */
477255d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
477355d1abb9SHong Zhang       /* i-th row */
477455d1abb9SHong Zhang       if (i == *nextrow[k]) {
477555d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4776f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4777f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
477855d1abb9SHong Zhang         nextaj = 0;
477955d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
478055d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
478155d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
478255d1abb9SHong Zhang           }
478355d1abb9SHong Zhang         }
47849371c9d4SSatish Balay         nextrow[k]++;
47859371c9d4SSatish Balay         nextai[k]++;
478655d1abb9SHong Zhang       }
478755d1abb9SHong Zhang     }
47889566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
478955d1abb9SHong Zhang   }
47909566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
47919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
47929566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
479355d1abb9SHong Zhang 
47949566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
47959566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
47969566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
47979566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
47989566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
47993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
480055d1abb9SHong Zhang }
480138f152feSBarry Smith 
4802d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4803d71ae5a4SJacob Faibussowitsch {
480455a3bba9SHong Zhang   Mat                  B_mpi;
4805c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4806b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4807b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4808d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
48096497c311SBarry Smith   PetscInt             len, *dnz, *onz, bs, cbs;
4810c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4811b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
481255d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
481358cb9c82SHong Zhang   MPI_Status          *status;
48140298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4815be0fcf8dSHong Zhang   PetscBT              lnkbt;
481651a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4817776b82aeSLisandro Dalcin   PetscContainer       container;
481802c68681SHong Zhang 
4819e5f2cdd8SHong Zhang   PetscFunctionBegin;
48209566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48213c2c1871SHong Zhang 
482238f152feSBarry Smith   /* make sure it is a PETSc comm */
48239566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48249566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48259566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
482655d1abb9SHong Zhang 
48279566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48289566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4829e5f2cdd8SHong Zhang 
48306abd8857SHong Zhang   /* determine row ownership */
48319566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48329566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48349566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48379566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
483855d1abb9SHong Zhang 
48397a2fc3feSBarry Smith   m      = merge->rowmap->n;
48407a2fc3feSBarry Smith   owners = merge->rowmap->range;
48416abd8857SHong Zhang 
48426abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48433e06a4e6SHong Zhang   len_s = merge->len_s;
484451a7d1a8SHong Zhang 
48452257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4846c2234fe3SHong Zhang   merge->nsend = 0;
48476497c311SBarry Smith   for (PetscMPIInt proc = 0; proc < size; proc++) {
48482257cef7SHong Zhang     len_si[proc] = 0;
48493e06a4e6SHong Zhang     if (proc == rank) {
48506abd8857SHong Zhang       len_s[proc] = 0;
48513e06a4e6SHong Zhang     } else {
48526497c311SBarry Smith       PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc]));
48536497c311SBarry Smith       PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */
48543e06a4e6SHong Zhang     }
48553e06a4e6SHong Zhang     if (len_s[proc]) {
4856c2234fe3SHong Zhang       merge->nsend++;
48572257cef7SHong Zhang       nrows = 0;
48582257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48592257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48602257cef7SHong Zhang       }
48616497c311SBarry Smith       PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc]));
48622257cef7SHong Zhang       len += len_si[proc];
4863409913e3SHong Zhang     }
486458cb9c82SHong Zhang   }
4865409913e3SHong Zhang 
48662257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
48679566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
48689566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4869671beff6SHong Zhang 
48703e06a4e6SHong Zhang   /* post the Irecv of j-structure */
48719566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
48729566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
487302c68681SHong Zhang 
48743e06a4e6SHong Zhang   /* post the Isend of j-structure */
48759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
48763e06a4e6SHong Zhang 
48776497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
4878409913e3SHong Zhang     if (!len_s[proc]) continue;
487902c68681SHong Zhang     i = owners[proc];
48806497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
488151a7d1a8SHong Zhang     k++;
488251a7d1a8SHong Zhang   }
488351a7d1a8SHong Zhang 
48843e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
48859566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
48869566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
488702c68681SHong Zhang 
488802c68681SHong Zhang   /* send and recv i-structure */
48899566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
48909566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
489102c68681SHong Zhang 
48929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
48933e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
48946497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
489502c68681SHong Zhang     if (!len_s[proc]) continue;
48963e06a4e6SHong Zhang     /* form outgoing message for i-structure:
48973e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
48983e06a4e6SHong Zhang                [1:nrows]:           row index (global)
48993e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
49003e06a4e6SHong Zhang     */
49012257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
49023e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
49033e06a4e6SHong Zhang     buf_si[0]   = nrows;
49043e06a4e6SHong Zhang     buf_si_i[0] = 0;
49053e06a4e6SHong Zhang     nrows       = 0;
49063e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
49073e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
49083e06a4e6SHong Zhang       if (anzi) {
49093e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
49103e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
49113e06a4e6SHong Zhang         nrows++;
49123e06a4e6SHong Zhang       }
49133e06a4e6SHong Zhang     }
49146497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
491502c68681SHong Zhang     k++;
49162257cef7SHong Zhang     buf_si += len_si[proc];
491702c68681SHong Zhang   }
49182257cef7SHong Zhang 
49199566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49209566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
492102c68681SHong Zhang 
49229566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
492348a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49243e06a4e6SHong Zhang 
49259566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49269566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49279566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49289566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49299566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49309566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49319566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
493258cb9c82SHong Zhang 
4933bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
493458cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
493658cb9c82SHong Zhang   bi[0] = 0;
493758cb9c82SHong Zhang 
4938be0fcf8dSHong Zhang   /* create and initialize a linked list */
4939be0fcf8dSHong Zhang   nlnk = N + 1;
49409566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
494158cb9c82SHong Zhang 
4942bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4943bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49449566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49452205254eSKarl Rupp 
494658cb9c82SHong Zhang   current_space = free_space;
494758cb9c82SHong Zhang 
4948bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49499566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49501d79065fSBarry Smith 
49513e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49522257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49533e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49543e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4955a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49563e06a4e6SHong Zhang   }
49572257cef7SHong Zhang 
4958d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4959bcc1bcd5SHong Zhang   len = 0;
496058cb9c82SHong Zhang   for (i = 0; i < m; i++) {
496158cb9c82SHong Zhang     bnzi = 0;
496258cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
496358cb9c82SHong Zhang     arow = owners[rank] + i;
496458cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
496558cb9c82SHong Zhang     aj   = a->j + ai[arow];
49669566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
496758cb9c82SHong Zhang     bnzi += nlnk;
496858cb9c82SHong Zhang     /* add received col data into lnk */
496951a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
497055d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
49713e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
49723e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
49739566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
49743e06a4e6SHong Zhang         bnzi += nlnk;
49759371c9d4SSatish Balay         nextrow[k]++;
49769371c9d4SSatish Balay         nextai[k]++;
49773e06a4e6SHong Zhang       }
497858cb9c82SHong Zhang     }
4979bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
498058cb9c82SHong Zhang 
498158cb9c82SHong Zhang     /* if free space is not available, make more free space */
498248a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
498358cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
49849566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
49859566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
4986bcc1bcd5SHong Zhang 
498758cb9c82SHong Zhang     current_space->array += bnzi;
498858cb9c82SHong Zhang     current_space->local_used += bnzi;
498958cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
499058cb9c82SHong Zhang 
499158cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
499258cb9c82SHong Zhang   }
4993bcc1bcd5SHong Zhang 
49949566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
4995bcc1bcd5SHong Zhang 
49969566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
49979566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
49989566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
4999409913e3SHong Zhang 
5000bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
50019566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
50029566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
500354b84b50SHong Zhang   if (n == PETSC_DECIDE) {
50049566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
500554b84b50SHong Zhang   } else {
50069566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
500754b84b50SHong Zhang   }
50089566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
50099566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
50109566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
5011d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
50129566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
501358cb9c82SHong Zhang 
501490431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
50156abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5016affca5deSHong Zhang   merge->bi        = bi;
5017affca5deSHong Zhang   merge->bj        = bj;
501802c68681SHong Zhang   merge->buf_ri    = buf_ri;
501902c68681SHong Zhang   merge->buf_rj    = buf_rj;
50200298fd71SBarry Smith   merge->coi       = NULL;
50210298fd71SBarry Smith   merge->coj       = NULL;
50220298fd71SBarry Smith   merge->owners_co = NULL;
5023affca5deSHong Zhang 
50249566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5025bf0cc555SLisandro Dalcin 
5026affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50279566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50289566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
502949abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50309566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50319566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5032affca5deSHong Zhang   *mpimat = B_mpi;
503338f152feSBarry Smith 
50349566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5036e5f2cdd8SHong Zhang }
503725616d81SHong Zhang 
5038cc4c1da9SBarry Smith /*@
503911a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5040d4036a1aSHong Zhang   matrices from each processor
5041d4036a1aSHong Zhang 
5042d083f849SBarry Smith   Collective
5043d4036a1aSHong Zhang 
5044d4036a1aSHong Zhang   Input Parameters:
5045d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5046d4036a1aSHong Zhang . seqmat - the input sequential matrices
504711a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
504811a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
504911a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5050d4036a1aSHong Zhang 
5051d4036a1aSHong Zhang   Output Parameter:
5052d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5053d4036a1aSHong Zhang 
5054d4036a1aSHong Zhang   Level: advanced
5055d4036a1aSHong Zhang 
505611a5261eSBarry Smith   Note:
5057d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5058d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
5059b6971eaeSBarry Smith   destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`.
50602ef1f0ffSBarry Smith 
50611cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5062d4036a1aSHong Zhang @*/
5063d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5064d71ae5a4SJacob Faibussowitsch {
50657e63b356SHong Zhang   PetscMPIInt size;
506655d1abb9SHong Zhang 
506755d1abb9SHong Zhang   PetscFunctionBegin;
50689566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
50697e63b356SHong Zhang   if (size == 1) {
50709566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
50717e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
50729566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
50737e63b356SHong Zhang     } else {
50749566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
50757e63b356SHong Zhang     }
50769566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
50773ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
50787e63b356SHong Zhang   }
50799566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
508048a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
50819566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
50829566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
50833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
508455d1abb9SHong Zhang }
50854ebed01fSBarry Smith 
5086bc08b0f1SBarry Smith /*@
50872920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
50888a9c020eSBarry Smith 
50898a9c020eSBarry Smith   Not Collective
50908a9c020eSBarry Smith 
50912fe279fdSBarry Smith   Input Parameter:
509220f4b53cSBarry Smith . A - the matrix
50938a9c020eSBarry Smith 
50948a9c020eSBarry Smith   Output Parameter:
50958a9c020eSBarry Smith . A_loc - the local sequential matrix generated
50968a9c020eSBarry Smith 
50978a9c020eSBarry Smith   Level: developer
50988a9c020eSBarry Smith 
50998a9c020eSBarry Smith   Notes:
51002920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
51012920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
51022920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
51032920cce0SJacob Faibussowitsch 
510411a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51058a9c020eSBarry Smith 
51062920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
51072920cce0SJacob Faibussowitsch 
510811a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
51098a9c020eSBarry Smith 
51101cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
51118a9c020eSBarry Smith @*/
5112d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5113d71ae5a4SJacob Faibussowitsch {
51148a9c020eSBarry Smith   PetscBool mpi;
51158a9c020eSBarry Smith 
51168a9c020eSBarry Smith   PetscFunctionBegin;
51178a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51188a9c020eSBarry Smith   if (mpi) {
51198a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51208a9c020eSBarry Smith   } else {
51218a9c020eSBarry Smith     *A_loc = A;
51228a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51238a9c020eSBarry Smith   }
51243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51258a9c020eSBarry Smith }
51268a9c020eSBarry Smith 
51278a9c020eSBarry Smith /*@
51282920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
512925616d81SHong Zhang 
513032fba14fSHong Zhang   Not Collective
513125616d81SHong Zhang 
513225616d81SHong Zhang   Input Parameters:
513325616d81SHong Zhang + A     - the matrix
513411a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
513525616d81SHong Zhang 
513625616d81SHong Zhang   Output Parameter:
513725616d81SHong Zhang . A_loc - the local sequential matrix generated
513825616d81SHong Zhang 
513925616d81SHong Zhang   Level: developer
514025616d81SHong Zhang 
514177c65a98SStefano Zampini   Notes:
51422920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51432920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51442920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51452920cce0SJacob Faibussowitsch 
514611a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51478a9c020eSBarry Smith 
51482920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51492920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51502920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51512920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
515277c65a98SStefano Zampini 
51531cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
515425616d81SHong Zhang @*/
5155d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5156d71ae5a4SJacob Faibussowitsch {
515701b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5158b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5159b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5160ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5161ce496241SStefano Zampini   PetscScalar       *ca, *cam;
516277c65a98SStefano Zampini   PetscMPIInt        size;
5163d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
51645a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
51658661ff28SBarry Smith   PetscBool          match;
516625616d81SHong Zhang 
516725616d81SHong Zhang   PetscFunctionBegin;
51689566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
516928b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
51709566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
517177c65a98SStefano Zampini   if (size == 1) {
517277c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
51739566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
517477c65a98SStefano Zampini       *A_loc = mpimat->A;
517577c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
51769566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
517777c65a98SStefano Zampini     }
51783ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
517977c65a98SStefano Zampini   }
518070a9ba44SHong Zhang 
51819566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5182f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5183f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
51849371c9d4SSatish Balay   ai = a->i;
51859371c9d4SSatish Balay   aj = a->j;
51869371c9d4SSatish Balay   bi = b->i;
51879371c9d4SSatish Balay   bj = b->j;
51889566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
51899566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5190ce496241SStefano Zampini   aa = aav;
5191ce496241SStefano Zampini   ba = bav;
519201b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
51939566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5194dea91ad1SHong Zhang     ci[0] = 0;
5195ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
51969566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
51979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5198dea91ad1SHong Zhang     k = 0;
519901b7ae99SHong Zhang     for (i = 0; i < am; i++) {
52005a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52015a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
520201b7ae99SHong Zhang       /* off-diagonal portion of A */
52035a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52045a7d977cSHong Zhang         col = cmap[*bj];
52055a7d977cSHong Zhang         if (col >= cstart) break;
52069371c9d4SSatish Balay         cj[k] = col;
52079371c9d4SSatish Balay         bj++;
52085a7d977cSHong Zhang         ca[k++] = *ba++;
52095a7d977cSHong Zhang       }
52105a7d977cSHong Zhang       /* diagonal portion of A */
52115a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
52125a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
52135a7d977cSHong Zhang         ca[k++] = *aa++;
52145a7d977cSHong Zhang       }
52155a7d977cSHong Zhang       /* off-diagonal portion of A */
52165a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52175a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52185a7d977cSHong Zhang         ca[k++] = *ba++;
52195a7d977cSHong Zhang       }
522025616d81SHong Zhang     }
5221dea91ad1SHong Zhang     /* put together the new matrix */
52229566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5223dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5224dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5225dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5226e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5227e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5228dea91ad1SHong Zhang     mat->nonew   = 0;
52295a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52305a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5231fff043a9SJunchao Zhang     ci  = mat->i;
5232fff043a9SJunchao Zhang     cj  = mat->j;
52339566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52345a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52355a7d977cSHong Zhang       /* off-diagonal portion of A */
52365a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52375a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52385a7d977cSHong Zhang         col = cmap[*bj];
52395a7d977cSHong Zhang         if (col >= cstart) break;
52409371c9d4SSatish Balay         *cam++ = *ba++;
52419371c9d4SSatish Balay         bj++;
52425a7d977cSHong Zhang       }
52435a7d977cSHong Zhang       /* diagonal portion of A */
5244ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5245a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52465a7d977cSHong Zhang       /* off-diagonal portion of A */
5247f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52489371c9d4SSatish Balay         *cam++ = *ba++;
52499371c9d4SSatish Balay         bj++;
5250f33d1a9aSHong Zhang       }
52515a7d977cSHong Zhang     }
52529566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
525398921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52549566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52559566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52569566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
525825616d81SHong Zhang }
525925616d81SHong Zhang 
5260ed502f03SStefano Zampini /*@
526111a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52624cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5263ed502f03SStefano Zampini 
5264ed502f03SStefano Zampini   Not Collective
5265ed502f03SStefano Zampini 
5266ed502f03SStefano Zampini   Input Parameters:
5267ed502f03SStefano Zampini + A     - the matrix
526811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5269ed502f03SStefano Zampini 
5270d8d19677SJose E. Roman   Output Parameters:
52712ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5272ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5273ed502f03SStefano Zampini 
5274ed502f03SStefano Zampini   Level: developer
5275ed502f03SStefano Zampini 
527611a5261eSBarry Smith   Note:
52772ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
52784cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5279ed502f03SStefano Zampini 
52801cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5281ed502f03SStefano Zampini @*/
5282d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5283d71ae5a4SJacob Faibussowitsch {
5284ed502f03SStefano Zampini   Mat             Ao, Ad;
5285ed502f03SStefano Zampini   const PetscInt *cmap;
5286ed502f03SStefano Zampini   PetscMPIInt     size;
5287ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5288ed502f03SStefano Zampini 
5289ed502f03SStefano Zampini   PetscFunctionBegin;
52909566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
52919566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5292ed502f03SStefano Zampini   if (size == 1) {
5293ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52949566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5295ed502f03SStefano Zampini       *A_loc = Ad;
5296ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52979566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5298ed502f03SStefano Zampini     }
52999566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
53003ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5301ed502f03SStefano Zampini   }
53029566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
53039566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5304ed502f03SStefano Zampini   if (f) {
53059566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5306ed502f03SStefano Zampini   } else {
5307ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5308ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5309ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5310ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5311ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5312ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5313ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5314ed502f03SStefano Zampini     PetscScalar       *ca;
5315ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5316ed502f03SStefano Zampini 
53179566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53189566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5321ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5322ed502f03SStefano Zampini       PetscInt k;
53239566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53249566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53259566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5326ed502f03SStefano Zampini       ci[0] = 0;
5327ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5328ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5329ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5330ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5331ed502f03SStefano Zampini         /* diagonal portion of A */
5332ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5333ed502f03SStefano Zampini           cj[k] = *aj++;
5334ed502f03SStefano Zampini           ca[k] = *aa++;
5335ed502f03SStefano Zampini         }
5336ed502f03SStefano Zampini         /* off-diagonal portion of A */
5337ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5338ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5339ed502f03SStefano Zampini           ca[k] = *ba++;
5340ed502f03SStefano Zampini         }
5341ed502f03SStefano Zampini       }
5342ed502f03SStefano Zampini       /* put together the new matrix */
53439566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5344ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5345ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5346ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5347ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5348ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5349ed502f03SStefano Zampini       c->nonew   = 0;
53509566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5351ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53529566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5353ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5354ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5355ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5356ed502f03SStefano Zampini         /* diagonal portion of A */
5357ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5358ed502f03SStefano Zampini         /* off-diagonal portion of A */
5359ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5360ed502f03SStefano Zampini       }
53619566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
536298921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53639566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
53649566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5365ed502f03SStefano Zampini     if (glob) {
5366ed502f03SStefano Zampini       PetscInt cst, *gidx;
5367ed502f03SStefano Zampini 
53689566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
53699566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5370ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5371ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
53729566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5373ed502f03SStefano Zampini     }
5374ed502f03SStefano Zampini   }
53759566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
53763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5377ed502f03SStefano Zampini }
5378ed502f03SStefano Zampini 
537932fba14fSHong Zhang /*@C
538011a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
538132fba14fSHong Zhang 
538232fba14fSHong Zhang   Not Collective
538332fba14fSHong Zhang 
538432fba14fSHong Zhang   Input Parameters:
538532fba14fSHong Zhang + A     - the matrix
538611a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
538720f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
538820f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
538932fba14fSHong Zhang 
539032fba14fSHong Zhang   Output Parameter:
539132fba14fSHong Zhang . A_loc - the local sequential matrix generated
539232fba14fSHong Zhang 
539332fba14fSHong Zhang   Level: developer
539432fba14fSHong Zhang 
53951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
539632fba14fSHong Zhang @*/
5397d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5398d71ae5a4SJacob Faibussowitsch {
539932fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
540032fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
540132fba14fSHong Zhang   IS          isrowa, iscola;
540232fba14fSHong Zhang   Mat        *aloc;
54034a2b5492SBarry Smith   PetscBool   match;
540432fba14fSHong Zhang 
540532fba14fSHong Zhang   PetscFunctionBegin;
54069566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
540728b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
54089566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
540932fba14fSHong Zhang   if (!row) {
54109371c9d4SSatish Balay     start = A->rmap->rstart;
54119371c9d4SSatish Balay     end   = A->rmap->rend;
54129566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
541332fba14fSHong Zhang   } else {
541432fba14fSHong Zhang     isrowa = *row;
541532fba14fSHong Zhang   }
541632fba14fSHong Zhang   if (!col) {
5417d0f46423SBarry Smith     start = A->cmap->rstart;
541832fba14fSHong Zhang     cmap  = a->garray;
5419d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5420d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54219566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
542232fba14fSHong Zhang     ncols = 0;
542332fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
542432fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
542532fba14fSHong Zhang       else break;
542632fba14fSHong Zhang     }
542732fba14fSHong Zhang     imark = i;
542832fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
542932fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54309566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
543132fba14fSHong Zhang   } else {
543232fba14fSHong Zhang     iscola = *col;
543332fba14fSHong Zhang   }
543432fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
543632fba14fSHong Zhang     aloc[0] = *A_loc;
543732fba14fSHong Zhang   }
54389566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5439109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54409566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5441109e0772SStefano Zampini   }
544232fba14fSHong Zhang   *A_loc = aloc[0];
54439566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
544448a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
544548a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54469566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
544832fba14fSHong Zhang }
544932fba14fSHong Zhang 
54505c65b9ecSFande Kong /*
54515c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54525c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54535c65b9ecSFande Kong  * on a global size.
54545c65b9ecSFande Kong  * */
5455ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5456d71ae5a4SJacob Faibussowitsch {
54575c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5458f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5459131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5460131c27b5Sprj-   PetscMPIInt            owner;
54615c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54625c65b9ecSFande Kong   const PetscInt        *lrowindices;
54635c65b9ecSFande Kong   PetscSF                sf, osf;
54645c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
54655c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
54665c65b9ecSFande Kong   MPI_Comm               comm;
54675c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5468fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
54695c65b9ecSFande Kong 
54705c65b9ecSFande Kong   PetscFunctionBegin;
54719566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
54725c65b9ecSFande Kong   /* plocalsize is the number of roots
54735c65b9ecSFande Kong    * nrows is the number of leaves
54745c65b9ecSFande Kong    * */
54759566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
54769566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
54779566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
54789566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
54795c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
54805c65b9ecSFande Kong     /* Find a remote index and an owner for a row
54815c65b9ecSFande Kong      * The row could be local or remote
54825c65b9ecSFande Kong      * */
548334bcad68SFande Kong     owner = 0;
548434bcad68SFande Kong     lidx  = 0;
54859566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
54865c65b9ecSFande Kong     iremote[i].index = lidx;
54875c65b9ecSFande Kong     iremote[i].rank  = owner;
54885c65b9ecSFande Kong   }
54895c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
54909566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5491f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
54925c65b9ecSFande Kong    * offsets
54935c65b9ecSFande Kong    * */
54949566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
54959566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
54969566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5497bc8e477aSFande Kong 
54989566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
54999566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
55009566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
55015c65b9ecSFande Kong   roffsets[0] = 0;
55025c65b9ecSFande Kong   roffsets[1] = 0;
55035c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
55044cf0e950SBarry Smith     /* diagonal */
55055c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
55064cf0e950SBarry Smith     /* off-diagonal */
55075c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
55085c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
55095c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
55105c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
55115c65b9ecSFande Kong   }
55129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
55139566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
55145c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
55159566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55169566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55179566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55189566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55199566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55209566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55219566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55225c65b9ecSFande Kong   dntotalcols = 0;
55235c65b9ecSFande Kong   ontotalcols = 0;
5524bc8e477aSFande Kong   ncol        = 0;
55255c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55265c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5527bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55284cf0e950SBarry Smith     /* diagonal */
55295c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55304cf0e950SBarry Smith     /* off-diagonal */
55315c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55325c65b9ecSFande Kong   }
55335c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55345c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55355c65b9ecSFande Kong    * */
55369566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55379566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55389566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55395c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55404cf0e950SBarry Smith   /* diagonal */
55419566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55424cf0e950SBarry Smith   /* off-diagonal */
55439566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55444cf0e950SBarry Smith   /* diagonal */
55459566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55464cf0e950SBarry Smith   /* off-diagonal */
55479566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55485c65b9ecSFande Kong   dntotalcols = 0;
55495c65b9ecSFande Kong   ontotalcols = 0;
55505c65b9ecSFande Kong   ntotalcols  = 0;
55515c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
555234bcad68SFande Kong     owner = 0;
55539566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55545c65b9ecSFande Kong     /* Set iremote for diag matrix */
55555c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55565c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55575c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55585c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55595c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55605c65b9ecSFande Kong     }
55614cf0e950SBarry Smith     /* off-diagonal */
55625c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
55635c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
55645c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
55655c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
55665c65b9ecSFande Kong     }
55675c65b9ecSFande Kong   }
55689566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
55699566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
55709566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
55719566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
55725c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
55735c65b9ecSFande Kong    * Diag matrix
55745c65b9ecSFande Kong    * */
55759566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55769566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55779566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
55785c65b9ecSFande Kong 
55799566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
55804cf0e950SBarry Smith   /* off-diagonal */
55819566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
55829566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
55839566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
55849566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
55859566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
55864cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
55879566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
55889566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
55899566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
55905c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
55915c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
55929566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
55935c65b9ecSFande Kong   /* We want P_oth store global indices */
55949566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
55955c65b9ecSFande Kong   /* Use memory scalable approach */
55969566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
55979566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
55989566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
55999566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56005c65b9ecSFande Kong   /* Convert back to local indices */
56015c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
56029566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56035c65b9ecSFande Kong   nout = 0;
56049566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
560508401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
56069566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
56075c65b9ecSFande Kong   /* Exchange values */
56089566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56099566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56109566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56119566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56125c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
56135c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
56149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
56159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56165c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56179566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56189566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56199566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56209566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56225c65b9ecSFande Kong }
56235c65b9ecSFande Kong 
56245c65b9ecSFande Kong /*
56255c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56265c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56275c65b9ecSFande Kong  * */
5628d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5629d71ae5a4SJacob Faibussowitsch {
56305c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5631bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5632bc8e477aSFande Kong   IS          rows, map;
5633bc8e477aSFande Kong   PetscHMapI  hamp;
5634bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56355c65b9ecSFande Kong   MPI_Comm    comm;
56365c65b9ecSFande Kong   PetscSF     sf, osf;
5637bc8e477aSFande Kong   PetscBool   has;
56385c65b9ecSFande Kong 
56395c65b9ecSFande Kong   PetscFunctionBegin;
56409566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56419566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56425c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56435c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56445c65b9ecSFande Kong    * */
56455c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56465c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5647eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56489566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5649bc8e477aSFande Kong     count = 0;
5650bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5651bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5652bc8e477aSFande Kong       key = a->garray[i] / dof;
56539566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5654bc8e477aSFande Kong       if (!has) {
5655bc8e477aSFande Kong         mapping[i] = count;
56569566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5657bc8e477aSFande Kong       } else {
5658bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5659bc8e477aSFande Kong         mapping[i] = count - 1;
56605c65b9ecSFande Kong       }
5661bc8e477aSFande Kong     }
56629566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
56639566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5664eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
56659566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
56665c65b9ecSFande Kong     off = 0;
56679566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
56689566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
56699566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
56709566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
56715c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
56729566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
56739566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
56749566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
56759566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
56769566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
56775c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
56785c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
567935cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5680fff043a9SJunchao Zhang      */
5681fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5682fff043a9SJunchao Zhang 
56839566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
56849566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
568508401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
56865c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
56875c65b9ecSFande Kong     /* Update values in place */
56889566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56899566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56909566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56919566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56929566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56939566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56949566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56959566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56966718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
56979566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
56983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56995c65b9ecSFande Kong }
57005c65b9ecSFande Kong 
570125616d81SHong Zhang /*@C
570220f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
570325616d81SHong Zhang 
5704c3339decSBarry Smith   Collective
570525616d81SHong Zhang 
570625616d81SHong Zhang   Input Parameters:
570711a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
570811a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
570911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
571025616d81SHong Zhang 
5711f1a722f8SMatthew G. Knepley   Output Parameters:
571227430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
571327430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5714f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
571525616d81SHong Zhang 
571625616d81SHong Zhang   Level: developer
571725616d81SHong Zhang 
571820f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
571925616d81SHong Zhang @*/
5720d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5721d71ae5a4SJacob Faibussowitsch {
5722899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5723b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
572425616d81SHong Zhang   IS          isrowb, iscolb;
57250298fd71SBarry Smith   Mat        *bseq = NULL;
572625616d81SHong Zhang 
572725616d81SHong Zhang   PetscFunctionBegin;
572820f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
572920f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
573125616d81SHong Zhang 
573225616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5733d0f46423SBarry Smith     start = A->cmap->rstart;
573425616d81SHong Zhang     cmap  = a->garray;
5735d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5736d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57379566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
573825616d81SHong Zhang     ncols = 0;
57390390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
574025616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
574125616d81SHong Zhang       else break;
574225616d81SHong Zhang     }
574325616d81SHong Zhang     imark = i;
57440390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57450390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57469566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57479566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
574825616d81SHong Zhang   } else {
574908401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57509371c9d4SSatish Balay     isrowb = *rowb;
57519371c9d4SSatish Balay     iscolb = *colb;
57529566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
575325616d81SHong Zhang     bseq[0] = *B_seq;
575425616d81SHong Zhang   }
57559566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
575625616d81SHong Zhang   *B_seq = bseq[0];
57579566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
575825616d81SHong Zhang   if (!rowb) {
57599566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
576025616d81SHong Zhang   } else {
576125616d81SHong Zhang     *rowb = isrowb;
576225616d81SHong Zhang   }
576325616d81SHong Zhang   if (!colb) {
57649566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
576525616d81SHong Zhang   } else {
576625616d81SHong Zhang     *colb = iscolb;
576725616d81SHong Zhang   }
57689566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
57693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
577025616d81SHong Zhang }
5771429d309bSHong Zhang 
5772f8487c73SHong Zhang /*
577327430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
577401b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5775429d309bSHong Zhang 
5776c3339decSBarry Smith     Collective
5777429d309bSHong Zhang 
5778429d309bSHong Zhang    Input Parameters:
577927430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
578027430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5781429d309bSHong Zhang 
5782429d309bSHong Zhang    Output Parameter:
57830298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
57840298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
57850298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5786598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5787429d309bSHong Zhang 
578811a5261eSBarry Smith     Developer Note:
578911a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
57906eb45d04SBarry Smith      for this matrix. This is not desirable..
57916eb45d04SBarry Smith 
5792429d309bSHong Zhang     Level: developer
5793429d309bSHong Zhang 
5794f8487c73SHong Zhang */
57956497c311SBarry Smith 
5796d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5797d71ae5a4SJacob Faibussowitsch {
5798899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
57994b8d542aSHong Zhang   VecScatter         ctx;
5800ce94432eSBarry Smith   MPI_Comm           comm;
58013515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
58026497c311SBarry Smith   PetscMPIInt        nrecvs, nsends;
58033515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5804277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
58056497c311SBarry Smith   PetscInt           i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len;
5806277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5807ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5808ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5809429d309bSHong Zhang 
5810429d309bSHong Zhang   PetscFunctionBegin;
58119566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
58129566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5813a7c7454dSHong Zhang 
581420f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
581520f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58169566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58179566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5818a6b2eed2SHong Zhang 
5819ec07b8f8SHong Zhang   if (size == 1) {
5820ec07b8f8SHong Zhang     startsj_s = NULL;
5821ec07b8f8SHong Zhang     bufa_ptr  = NULL;
582252f7967eSHong Zhang     *B_oth    = NULL;
58233ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5824ec07b8f8SHong Zhang   }
5825ec07b8f8SHong Zhang 
5826fa83eaafSHong Zhang   ctx = a->Mvctx;
58274b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58284b8d542aSHong Zhang 
58299566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58303515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58319566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58329566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5834ddea5d60SJunchao Zhang   rwaits = reqs;
58358e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5836429d309bSHong Zhang 
5837b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5838429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5839a6b2eed2SHong Zhang     /* i-array */
5840a6b2eed2SHong Zhang     /*  post receives */
58419566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5842a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
584374268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5844e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58456497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5846429d309bSHong Zhang     }
5847a6b2eed2SHong Zhang 
5848a6b2eed2SHong Zhang     /* pack the outgoing message */
58499566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58502205254eSKarl Rupp 
58512205254eSKarl Rupp     sstartsj[0] = 0;
58522205254eSKarl Rupp     rstartsj[0] = 0;
5853a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58543515ee7fSJunchao Zhang     if (nsends) {
58553515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58569566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58573515ee7fSJunchao Zhang     }
5858a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58593515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5860e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
586187025532SHong Zhang       for (j = 0; j < nrows; j++) {
5862d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5863e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
58649566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
58652205254eSKarl Rupp 
5866e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
58672205254eSKarl Rupp 
5868e42f35eeSHong Zhang           len += ncols;
58699566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5870e42f35eeSHong Zhang         }
5871a6b2eed2SHong Zhang         k++;
5872429d309bSHong Zhang       }
58736497c311SBarry Smith       PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
58742205254eSKarl Rupp 
5875dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5876429d309bSHong Zhang     }
587787025532SHong Zhang     /* recvs and sends of i-array are completed */
58789566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
58799566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5880e42f35eeSHong Zhang 
5881a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
58829566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
58839566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5884a6b2eed2SHong Zhang 
588587025532SHong Zhang     /* create i-array of B_oth */
58869566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
58872205254eSKarl Rupp 
588887025532SHong Zhang     b_othi[0] = 0;
5889a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5890a6b2eed2SHong Zhang     k         = 0;
5891a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
58923515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
58933515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
589487025532SHong Zhang       for (j = 0; j < nrows; j++) {
589587025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
58969566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5897f91af8c7SBarry Smith         k++;
5898a6b2eed2SHong Zhang       }
5899dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5900a6b2eed2SHong Zhang     }
59019566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5902a6b2eed2SHong Zhang 
59036aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
59049566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
59059566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5906a6b2eed2SHong Zhang 
590787025532SHong Zhang     /* j-array */
5908a6b2eed2SHong Zhang     /*  post receives of j-array */
5909a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
591087025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59116497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5912a6b2eed2SHong Zhang     }
5913e42f35eeSHong Zhang 
5914e42f35eeSHong Zhang     /* pack the outgoing message j-array */
59153515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5916a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5917e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5918a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
591987025532SHong Zhang       for (j = 0; j < nrows; j++) {
5920d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5921e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59229566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5923ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59249566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5925e42f35eeSHong Zhang         }
592687025532SHong Zhang       }
59276497c311SBarry Smith       PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
592887025532SHong Zhang     }
592987025532SHong Zhang 
593087025532SHong Zhang     /* recvs and sends of j-array are completed */
59319566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
593287025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5933b7f45c76SHong Zhang     sstartsj = *startsj_s;
59341d79065fSBarry Smith     rstartsj = *startsj_r;
593587025532SHong Zhang     bufa     = *bufa_ptr;
59369566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5937ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
593887025532SHong Zhang 
593987025532SHong Zhang   /* a-array */
594087025532SHong Zhang   /*  post receives of a-array */
594187025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
594287025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59436497c311SBarry Smith     PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
594487025532SHong Zhang   }
5945e42f35eeSHong Zhang 
5946e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59473515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
594887025532SHong Zhang   for (i = 0; i < nsends; i++) {
5949e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
595087025532SHong Zhang     bufA  = bufa + sstartsj[i];
595187025532SHong Zhang     for (j = 0; j < nrows; j++) {
5952d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5953e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59549566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5955ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59569566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5957e42f35eeSHong Zhang       }
5958a6b2eed2SHong Zhang     }
59596497c311SBarry Smith     PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5960a6b2eed2SHong Zhang   }
596187025532SHong Zhang   /* recvs and sends of a-array are completed */
59629566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59639566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
5964a6b2eed2SHong Zhang 
596587025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5966dd460d27SBarry Smith     Mat_SeqAIJ *b_oth;
5967dd460d27SBarry Smith 
5968a6b2eed2SHong Zhang     /* put together the new matrix */
59699566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
5970a6b2eed2SHong Zhang 
5971a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5972a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
597387025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
5974e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
5975e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
597687025532SHong Zhang     b_oth->nonew   = 0;
5977a6b2eed2SHong Zhang 
59789566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
5979b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
59809566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
59819566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
5982dea91ad1SHong Zhang     } else {
5983b7f45c76SHong Zhang       *startsj_s = sstartsj;
59841d79065fSBarry Smith       *startsj_r = rstartsj;
598587025532SHong Zhang       *bufa_ptr  = bufa;
598687025532SHong Zhang     }
5987fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
59889566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
5989dea91ad1SHong Zhang   }
59903515ee7fSJunchao Zhang 
59919566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
59929566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
59939566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
59943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5995429d309bSHong Zhang }
5996ccd8e176SBarry Smith 
5997cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
5998cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
5999ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
60009779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
6001a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
6002191b95cbSRichard Tran Mills #endif
6003ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
6004cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
60055d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6006cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
60075d7652ecSHong Zhang #endif
6008d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
6009d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
6010d24d4204SJose E. Roman #endif
601163c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
601263c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
601363c07aadSStefano Zampini #endif
60143338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
60153338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60163338378cSStefano Zampini #endif
6017d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6018d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6019d5e393b6SSuyash Tandon #endif
60203d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60213d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60223d0639e7SStefano Zampini #endif
6023d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60244222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60254222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
602617667f90SBarry Smith 
6027fc4dec0aSBarry Smith /*
6028fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6029fc4dec0aSBarry Smith 
6030fc4dec0aSBarry Smith                n                       p                          p
60312da392ccSBarry Smith         [             ]       [             ]         [                 ]
60322da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60332da392ccSBarry Smith         [             ]       [             ]         [                 ]
6034fc4dec0aSBarry Smith 
6035fc4dec0aSBarry Smith */
6036d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6037d71ae5a4SJacob Faibussowitsch {
6038fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6039fc4dec0aSBarry Smith 
6040fc4dec0aSBarry Smith   PetscFunctionBegin;
60419566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60429566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
6043fb842aefSJose E. Roman   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct));
60449566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60459566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60467fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60479566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60489566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6050fc4dec0aSBarry Smith }
6051fc4dec0aSBarry Smith 
6052d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6053d71ae5a4SJacob Faibussowitsch {
60546718818eSStefano Zampini   PetscBool cisdense;
6055fc4dec0aSBarry Smith 
6056fc4dec0aSBarry Smith   PetscFunctionBegin;
605708401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60589566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60599566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6060d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
606148a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60629566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6063f75ecaa4SHong Zhang 
60644222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
60653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6066fc4dec0aSBarry Smith }
6067fc4dec0aSBarry Smith 
6068d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6069d71ae5a4SJacob Faibussowitsch {
60704222ddf1SHong Zhang   Mat_Product *product = C->product;
60714222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6072fc4dec0aSBarry Smith 
6073fc4dec0aSBarry Smith   PetscFunctionBegin;
607420f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
607520f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
60764222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
60774222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
60783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6079fc4dec0aSBarry Smith }
6080fc4dec0aSBarry Smith 
6081d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6082d71ae5a4SJacob Faibussowitsch {
60834222ddf1SHong Zhang   Mat_Product *product = C->product;
60844222ddf1SHong Zhang 
60854222ddf1SHong Zhang   PetscFunctionBegin;
608648a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
60873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60884222ddf1SHong Zhang }
6089394ed5ebSJunchao Zhang 
609027430b45SBarry Smith /*
609127430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6092394ed5ebSJunchao Zhang 
6093394ed5ebSJunchao Zhang   Input Parameters:
6094394ed5ebSJunchao Zhang 
6095651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6096651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6097394ed5ebSJunchao Zhang 
6098158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6099394ed5ebSJunchao Zhang 
6100394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6101394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6102394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6103394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6104394ed5ebSJunchao Zhang 
6105394ed5ebSJunchao Zhang     Similar for Set2.
6106394ed5ebSJunchao Zhang 
6107394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6108394ed5ebSJunchao Zhang 
6109158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6110394ed5ebSJunchao Zhang 
6111394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6112394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6113394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6114394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6115394ed5ebSJunchao Zhang */
6116d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6117d71ae5a4SJacob Faibussowitsch {
6118394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6119394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6120394ed5ebSJunchao Zhang 
6121394ed5ebSJunchao Zhang   PetscFunctionBegin;
61229566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6123394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6124394ed5ebSJunchao Zhang   i[0]        = 0;
6125394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6126394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6127394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6128394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6129394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6130394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6131394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6132394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6133394ed5ebSJunchao Zhang         imap1[t1] = t;
6134394ed5ebSJunchao Zhang         imap2[t2] = t;
6135394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6136394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61379371c9d4SSatish Balay         t1++;
61389371c9d4SSatish Balay         t2++;
61399371c9d4SSatish Balay         t++;
6140394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6141394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6142394ed5ebSJunchao Zhang         imap1[t1] = t;
6143394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61449371c9d4SSatish Balay         t1++;
61459371c9d4SSatish Balay         t++;
6146394ed5ebSJunchao Zhang       } else {
6147394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6148394ed5ebSJunchao Zhang         imap2[t2] = t;
6149394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61509371c9d4SSatish Balay         t2++;
61519371c9d4SSatish Balay         t++;
6152394ed5ebSJunchao Zhang       }
6153394ed5ebSJunchao Zhang     }
6154394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6155394ed5ebSJunchao Zhang     while (b1 < e1) {
6156394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6157394ed5ebSJunchao Zhang       imap1[t1] = t;
6158394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61599371c9d4SSatish Balay       t1++;
61609371c9d4SSatish Balay       t++;
6161394ed5ebSJunchao Zhang     }
6162394ed5ebSJunchao Zhang     while (b2 < e2) {
6163394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6164394ed5ebSJunchao Zhang       imap2[t2] = t;
6165394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
61669371c9d4SSatish Balay       t2++;
61679371c9d4SSatish Balay       t++;
6168394ed5ebSJunchao Zhang     }
61696497c311SBarry Smith     PetscCall(PetscIntCast(t, i + r + 1));
6170394ed5ebSJunchao Zhang   }
61713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6172394ed5ebSJunchao Zhang }
6173394ed5ebSJunchao Zhang 
617427430b45SBarry Smith /*
617527430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6176394ed5ebSJunchao Zhang 
6177394ed5ebSJunchao Zhang   Input Parameters:
6178394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6179394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6180394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6181394ed5ebSJunchao Zhang 
6182394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6183394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6184394ed5ebSJunchao Zhang 
6185394ed5ebSJunchao Zhang   Output Parameters:
6186394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6187394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6188394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6189394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6190394ed5ebSJunchao Zhang 
6191394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6192158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6193158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6194394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6195394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6196394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6197394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6198394ed5ebSJunchao Zhang 
6199394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6200394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6201394ed5ebSJunchao Zhang 
6202394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6203394ed5ebSJunchao Zhang 
6204158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6205394ed5ebSJunchao Zhang */
6206d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6207d71ae5a4SJacob Faibussowitsch {
6208394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6209394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6210394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6211394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6212394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6213394ed5ebSJunchao Zhang 
6214394ed5ebSJunchao Zhang   PetscFunctionBegin;
62159566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62169566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6217394ed5ebSJunchao Zhang   m = rend - rstart;
6218394ed5ebSJunchao Zhang 
6219651b1cf9SStefano Zampini   /* Skip negative rows */
6220651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62219371c9d4SSatish Balay     if (i[k] >= 0) break;
6222394ed5ebSJunchao Zhang 
6223394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6224394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6225394ed5ebSJunchao Zhang   */
6226394ed5ebSJunchao Zhang   while (k < n) {
6227394ed5ebSJunchao Zhang     row = i[k];
6228394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62299371c9d4SSatish Balay     for (s = k; s < n; s++)
62309371c9d4SSatish Balay       if (i[s] != row) break;
6231651b1cf9SStefano Zampini 
62321690c2aeSBarry Smith     /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */
6233394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
62341690c2aeSBarry Smith       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX;
623554c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6236394ed5ebSJunchao Zhang     }
62379566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6238158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6239394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6240394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6241394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6242394ed5ebSJunchao Zhang 
6243394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6244394ed5ebSJunchao Zhang     Atot += mid - k;
6245394ed5ebSJunchao Zhang     Btot += s - mid;
6246394ed5ebSJunchao Zhang 
6247651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6248394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6249394ed5ebSJunchao Zhang       col = j[p];
62509371c9d4SSatish Balay       do {
62511690c2aeSBarry Smith         j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */
62529371c9d4SSatish Balay         p++;
6253651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6254394ed5ebSJunchao Zhang       Annz++;
6255394ed5ebSJunchao Zhang     }
6256394ed5ebSJunchao Zhang 
6257651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6258394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6259394ed5ebSJunchao Zhang       col = j[p];
6260d71ae5a4SJacob Faibussowitsch       do {
6261d71ae5a4SJacob Faibussowitsch         p++;
6262d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6263394ed5ebSJunchao Zhang       Bnnz++;
6264394ed5ebSJunchao Zhang     }
6265394ed5ebSJunchao Zhang     k = s;
6266394ed5ebSJunchao Zhang   }
6267394ed5ebSJunchao Zhang 
6268394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6269158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6270158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6271158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6272158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6273394ed5ebSJunchao Zhang 
62746aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6275394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6276394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6277394ed5ebSJunchao Zhang     k   = rowBegin[r];
6278394ed5ebSJunchao Zhang     mid = rowMid[r];
6279394ed5ebSJunchao Zhang     s   = rowEnd[r];
62808e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
62818e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6282394ed5ebSJunchao Zhang     Atot += mid - k;
6283394ed5ebSJunchao Zhang     Btot += s - mid;
6284394ed5ebSJunchao Zhang 
6285394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6286394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6287394ed5ebSJunchao Zhang       col = j[p];
6288394ed5ebSJunchao Zhang       q   = p;
6289d71ae5a4SJacob Faibussowitsch       do {
6290d71ae5a4SJacob Faibussowitsch         p++;
6291d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6292394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6293394ed5ebSJunchao Zhang       Annz++;
6294394ed5ebSJunchao Zhang     }
6295394ed5ebSJunchao Zhang 
6296394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6297394ed5ebSJunchao Zhang       col = j[p];
6298394ed5ebSJunchao Zhang       q   = p;
6299d71ae5a4SJacob Faibussowitsch       do {
6300d71ae5a4SJacob Faibussowitsch         p++;
6301d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6302394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6303394ed5ebSJunchao Zhang       Bnnz++;
6304394ed5ebSJunchao Zhang     }
6305394ed5ebSJunchao Zhang   }
6306394ed5ebSJunchao Zhang   /* Output */
6307394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6308394ed5ebSJunchao Zhang   *Annz_  = Annz;
6309394ed5ebSJunchao Zhang   *Atot_  = Atot;
6310394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6311394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6312394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6313394ed5ebSJunchao Zhang   *Btot_  = Btot;
6314394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
63153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6316394ed5ebSJunchao Zhang }
6317394ed5ebSJunchao Zhang 
631827430b45SBarry Smith /*
631927430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6320158ec288SJunchao Zhang 
6321158ec288SJunchao Zhang   Input Parameters:
6322158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6323158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6324158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6325651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6326158ec288SJunchao Zhang 
6327158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6328158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6329158ec288SJunchao Zhang 
6330158ec288SJunchao Zhang   Example:
6331158ec288SJunchao Zhang     nnz1 = 4
6332158ec288SJunchao Zhang     nnz  = 6
6333158ec288SJunchao Zhang     imap = [1,3,4,5]
6334158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6335158ec288SJunchao Zhang    then,
6336158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6337158ec288SJunchao Zhang */
6338d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6339d71ae5a4SJacob Faibussowitsch {
6340158ec288SJunchao Zhang   PetscCount k, p;
6341158ec288SJunchao Zhang 
6342158ec288SJunchao Zhang   PetscFunctionBegin;
6343158ec288SJunchao Zhang   jmap_new[0] = 0;
6344158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6345158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6346158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6347158ec288SJunchao Zhang   }
6348158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6350158ec288SJunchao Zhang }
6351158ec288SJunchao Zhang 
635249abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data)
63532c4ab24aSJunchao Zhang {
635449abdd8aSBarry Smith   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data;
63552c4ab24aSJunchao Zhang 
63562c4ab24aSJunchao Zhang   PetscFunctionBegin;
63572c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63582c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63592c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63602c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63612c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63622c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
63632c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
63642c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
63652c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
63662c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
63672c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
63682c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
63692c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
63702c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
63712c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
63722c4ab24aSJunchao Zhang }
63732c4ab24aSJunchao Zhang 
6374d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6375d71ae5a4SJacob Faibussowitsch {
6376394ed5ebSJunchao Zhang   MPI_Comm             comm;
6377394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6378394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6379394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6380394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
63812c4ab24aSJunchao Zhang   PetscContainer       container;
63822c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6383394ed5ebSJunchao Zhang 
6384394ed5ebSJunchao Zhang   PetscFunctionBegin;
63859566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
63869566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6387cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6388eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6389cbc6b225SStefano Zampini #else
63909566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6391cbc6b225SStefano Zampini #endif
63929566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6393cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6394cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6395cbc6b225SStefano Zampini 
63969566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
63979566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
63989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
63999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
64009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
64019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
64029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
64039566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
64049566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6405394ed5ebSJunchao Zhang 
64066aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6407394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6408394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6409e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6410e8729f6fSJunchao Zhang 
6411e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6412394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6413394ed5ebSJunchao Zhang 
6414394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6415394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6416394ed5ebSJunchao Zhang      will have positive row indices.
6417394ed5ebSJunchao Zhang   */
6418394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
64191690c2aeSBarry Smith     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN;                /* e.g., -2^31, minimal to move them ahead */
64201690c2aeSBarry Smith     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */
6421f7d195e4SLawrence Mitchell     else {
6422f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
64231690c2aeSBarry Smith       if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */
6424f7d195e4SLawrence Mitchell     }
6425394ed5ebSJunchao Zhang   }
6426394ed5ebSJunchao Zhang 
6427da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64289566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6429651b1cf9SStefano Zampini 
6430651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6431651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64321690c2aeSBarry Smith     if (i1[k] > PETSC_INT_MIN) break;
64336497c311SBarry Smith   PetscCount i1start = k;
6434651b1cf9SStefano Zampini 
64351690c2aeSBarry Smith   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */
64361690c2aeSBarry Smith   for (; k < rem; k++) i1[k] += PETSC_INT_MAX;                                    /* Revert row indices of local rows*/
6437394ed5ebSJunchao Zhang 
6438394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6439394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6440394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6441394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6442394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6443394ed5ebSJunchao Zhang   const PetscInt *ranges;
6444394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6445394ed5ebSJunchao Zhang 
64469566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64479566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6448394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6449394ed5ebSJunchao Zhang     PetscMPIInt owner;
6450394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6451cbc6b225SStefano Zampini 
6452394ed5ebSJunchao Zhang     /* Locate a row range */
6453394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64549566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6455394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6456394ed5ebSJunchao Zhang 
6457394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
64589566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6459394ed5ebSJunchao Zhang 
6460394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6461394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6462394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6463394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6464394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6465cbc6b225SStefano Zampini 
64669566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
64679566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
64689566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
64699566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6470394ed5ebSJunchao Zhang       sendto   = sendto2;
6471394ed5ebSJunchao Zhang       nentries = nentries2;
6472394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6473394ed5ebSJunchao Zhang     }
6474394ed5ebSJunchao Zhang     sendto[nsend] = owner;
64756497c311SBarry Smith     PetscCall(PetscIntCast(p - k, &nentries[nsend]));
6476394ed5ebSJunchao Zhang     nsend++;
6477394ed5ebSJunchao Zhang     k = p;
6478394ed5ebSJunchao Zhang   }
6479394ed5ebSJunchao Zhang 
6480394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6481394ed5ebSJunchao Zhang   PetscSF      sf1;
6482394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6483394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6484394ed5ebSJunchao Zhang   PetscInt    *offsets;
6485394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6486394ed5ebSJunchao Zhang 
64879566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
64889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
64899566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6490394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6491394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6492394ed5ebSJunchao Zhang     iremote[k].index = 0;
6493394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
649454c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6495394ed5ebSJunchao Zhang   }
64969566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
64979566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
64989566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
64999566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6500e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6501394ed5ebSJunchao Zhang 
6502394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6503394ed5ebSJunchao Zhang   PetscSF sf2;
6504394ed5ebSJunchao Zhang   nroots  = nroots2;
6505394ed5ebSJunchao Zhang   nleaves = nleaves2;
65069566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
65079566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
65089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6509394ed5ebSJunchao Zhang   p = 0;
6510394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
651154c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6512394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6513394ed5ebSJunchao Zhang       iremote[p].rank = sendto[k];
65146497c311SBarry Smith       PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index));
6515394ed5ebSJunchao Zhang     }
6516394ed5ebSJunchao Zhang   }
65179566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6518394ed5ebSJunchao Zhang 
6519394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6520394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6521394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6523834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6524834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6525de0a9f35SPierre Jolivet   PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem);
6526de0a9f35SPierre Jolivet   PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem);
6527834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6528834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6529834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6530834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6531394ed5ebSJunchao Zhang 
65329566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65339566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6534394ed5ebSJunchao Zhang 
6535394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6536394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65379566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6538394ed5ebSJunchao Zhang 
6539651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6540651b1cf9SStefano Zampini   PetscCount *Cperm1;
6541834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6542de0a9f35SPierre Jolivet   PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem);
6543651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6544834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6545651b1cf9SStefano Zampini 
6546651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6547651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6548651b1cf9SStefano Zampini   PetscBool hypre;
654917b874c6SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre));
6550651b1cf9SStefano Zampini   if (hypre) {
6551651b1cf9SStefano Zampini     PetscInt *minj;
6552651b1cf9SStefano Zampini     PetscBT   hasdiag;
6553651b1cf9SStefano Zampini 
6554651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6555651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
65561690c2aeSBarry Smith     for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX;
6557651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6558651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6559651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6560651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6561651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6562651b1cf9SStefano Zampini     }
6563651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6564651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6565651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6566651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6567651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6568651b1cf9SStefano Zampini     }
6569651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6570651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6571651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6572651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6573651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6574651b1cf9SStefano Zampini     }
6575651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6576651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6577651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6578651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6579651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6580651b1cf9SStefano Zampini     }
6581651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6582651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6583651b1cf9SStefano Zampini   }
6584651b1cf9SStefano Zampini 
6585651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6586651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6587651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6588651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6589394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6590394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6591394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6592394ed5ebSJunchao Zhang 
6593651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
65949566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6595651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
65969566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6597394ed5ebSJunchao Zhang 
6598394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6599394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6600394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6601394ed5ebSJunchao Zhang 
66029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
66039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
66049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
66059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6606394ed5ebSJunchao Zhang 
6607394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6608158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6609158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6610158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6611158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6612394ed5ebSJunchao Zhang 
66139566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66149566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6615158ec288SJunchao Zhang 
6616158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6617158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6618158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6619158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6620158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6621158ec288SJunchao Zhang 
6622158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6623158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6624158ec288SJunchao Zhang 
6625158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6626158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6627158ec288SJunchao Zhang 
6628158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6629158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6630158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6631158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66329566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66339566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6634e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66359566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6636394ed5ebSJunchao Zhang 
6637158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6638158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6639158ec288SJunchao Zhang 
6640394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6641394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6642394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66439566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66449566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66459566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6646394ed5ebSJunchao Zhang     Aj = Aj_new;
6647394ed5ebSJunchao Zhang   }
6648394ed5ebSJunchao Zhang 
6649394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6650394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66519566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66529566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66539566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6654394ed5ebSJunchao Zhang     Bj = Bj_new;
6655394ed5ebSJunchao Zhang   }
6656394ed5ebSJunchao Zhang 
6657cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6658394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6659cbc6b225SStefano Zampini   MatType          rtype;
6660394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6661cf8ba265SJunchao Zhang   PetscObjectState state;
66629566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
66639566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6664394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
66659371c9d4SSatish Balay   if (cstart) {
66669371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
66679371c9d4SSatish Balay   }
6668c508b908SBarry Smith 
66699566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6670c508b908SBarry Smith 
6671c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6672c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
66739566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
66740da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6675c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6676c508b908SBarry Smith 
6677c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6678c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
66799566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
66800da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6681c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6682c508b908SBarry Smith 
66839566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
66845bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6685cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6686462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6687cbc6b225SStefano Zampini 
6688394ed5ebSJunchao Zhang   a          = (Mat_SeqAIJ *)mpiaij->A->data;
6689394ed5ebSJunchao Zhang   b          = (Mat_SeqAIJ *)mpiaij->B->data;
66909f0612e4SBarry Smith   a->free_a  = PETSC_TRUE;
66919f0612e4SBarry Smith   a->free_ij = PETSC_TRUE;
66929f0612e4SBarry Smith   b->free_a  = PETSC_TRUE;
66939f0612e4SBarry Smith   b->free_ij = PETSC_TRUE;
669417b874c6SStefano Zampini   a->maxnz   = a->nz;
669517b874c6SStefano Zampini   b->maxnz   = b->nz;
6696394ed5ebSJunchao Zhang 
6697cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
66989566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
66999566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
67009566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
67019566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6702cbc6b225SStefano Zampini 
67032c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
67042c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
67052c4ab24aSJunchao Zhang   coo->n       = coo_n;
67062c4ab24aSJunchao Zhang   coo->sf      = sf2;
67072c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
67082c4ab24aSJunchao Zhang   coo->recvlen = nroots;
67092c4ab24aSJunchao Zhang   coo->Annz    = Annz;
67102c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
67112c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
67122c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
67132c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67142c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67152c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67162c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67172c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67182c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67192c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67202c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67212c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67222c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67232c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67242c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67252c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67262c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67272c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67282c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67292c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67302c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67312c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
673249abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ));
67332c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67342c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6736394ed5ebSJunchao Zhang }
6737394ed5ebSJunchao Zhang 
6738d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6739d71ae5a4SJacob Faibussowitsch {
6740394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6741394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6742394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67432c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67442c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67452c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67462c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67472c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67482c4ab24aSJunchao Zhang   PetscContainer       container;
67492c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6750394ed5ebSJunchao Zhang 
6751394ed5ebSJunchao Zhang   PetscFunctionBegin;
67522c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67532c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67542c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67552c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67562c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67572c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67582c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67592c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67602c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67612c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67622c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
67632c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
67642c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
67652c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
67662c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
67672c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
67682c4ab24aSJunchao Zhang 
67699566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
67709566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6771394ed5ebSJunchao Zhang 
6772394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
67732c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6774394ed5ebSJunchao Zhang 
6775394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
67762c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6777394ed5ebSJunchao Zhang   /* Add local entries to A and B */
67782c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6779da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6780158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6781158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6782394ed5ebSJunchao Zhang   }
67832c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6784158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6785158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6786158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6787394ed5ebSJunchao Zhang   }
67882c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6789394ed5ebSJunchao Zhang 
6790394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
67912c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6792394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6793394ed5ebSJunchao Zhang   }
67942c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6795394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6796394ed5ebSJunchao Zhang   }
67979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
67989566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
67993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6800394ed5ebSJunchao Zhang }
6801394ed5ebSJunchao Zhang 
6802ccd8e176SBarry Smith /*MC
6803ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6804ccd8e176SBarry Smith 
6805ccd8e176SBarry Smith    Options Database Keys:
680611a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6807ccd8e176SBarry Smith 
6808ccd8e176SBarry Smith    Level: beginner
68090cd7f59aSBarry Smith 
68100cd7f59aSBarry Smith    Notes:
68112ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
68120cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
68130cd7f59aSBarry Smith     in the matrix
68140cd7f59aSBarry Smith 
681511a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
681611a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6817ccd8e176SBarry Smith 
68181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6819ccd8e176SBarry Smith M*/
6820d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6821d71ae5a4SJacob Faibussowitsch {
6822ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6823ccd8e176SBarry Smith   PetscMPIInt size;
6824ccd8e176SBarry Smith 
6825ccd8e176SBarry Smith   PetscFunctionBegin;
68269566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68272205254eSKarl Rupp 
68284dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6829ccd8e176SBarry Smith   B->data       = (void *)b;
6830aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6831ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6832ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6833ccd8e176SBarry Smith   b->size       = size;
68342205254eSKarl Rupp 
68359566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6836ccd8e176SBarry Smith 
6837ccd8e176SBarry Smith   /* build cache for off array entries formed */
68389566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68392205254eSKarl Rupp 
6840ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6841f4259b30SLisandro Dalcin   b->colmap      = NULL;
6842f4259b30SLisandro Dalcin   b->garray      = NULL;
6843ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6844ccd8e176SBarry Smith 
6845ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68460298fd71SBarry Smith   b->lvec  = NULL;
68470298fd71SBarry Smith   b->Mvctx = NULL;
6848ccd8e176SBarry Smith 
6849ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6850f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6851f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6852ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6853ccd8e176SBarry Smith 
6854f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68550298fd71SBarry Smith   b->spptr = NULL;
6856f60c3dc2SHong Zhang 
68579566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68589566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68599566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68609566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68619566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68629566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
6863674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ));
68649566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
68659566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
68669566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
68679566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
68683d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
68699566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
68703d0639e7SStefano Zampini #endif
6871d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6872d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6873d5e393b6SSuyash Tandon #endif
68743d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
68759566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
68763d0639e7SStefano Zampini #endif
68779779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
68789566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6879191b95cbSRichard Tran Mills #endif
68809566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
68819566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
68829566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
68839566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
68845d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68859566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
68865d7652ecSHong Zhang #endif
6887d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
68889566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6889d24d4204SJose E. Roman #endif
68909566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
68919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
68923dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
68939566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
68949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
68953dad0653Sstefano_zampini #endif
68969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
68979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
68989566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
68999566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
69009566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
69013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6902ccd8e176SBarry Smith }
690381824310SBarry Smith 
69045d83a8b1SBarry Smith /*@
690511a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
690603bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
690703bfb495SBarry Smith 
6908d083f849SBarry Smith   Collective
690903bfb495SBarry Smith 
691003bfb495SBarry Smith   Input Parameters:
691103bfb495SBarry Smith + comm - MPI communicator
691211a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
691303bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6914d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
69152ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
69162ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69172ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6918483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
691904ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
692003bfb495SBarry Smith . a    - matrix values
6921483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69222ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
692303bfb495SBarry Smith - oa   - matrix values
692403bfb495SBarry Smith 
692503bfb495SBarry Smith   Output Parameter:
692603bfb495SBarry Smith . mat - the matrix
692703bfb495SBarry Smith 
692803bfb495SBarry Smith   Level: advanced
692903bfb495SBarry Smith 
693003bfb495SBarry Smith   Notes:
6931f13dfd9eSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user
6932292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
693303bfb495SBarry Smith 
69342ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
693503bfb495SBarry Smith 
69362ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
693703bfb495SBarry Smith 
69387b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69397b55108eSBarry Smith 
6940dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6941dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6942dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6943dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
694411a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6945dca341c0SJed Brown   communication if it is known that only local entries will be set.
694603bfb495SBarry Smith 
69471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6948db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69492b26979fSBarry Smith @*/
6950d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6951d71ae5a4SJacob Faibussowitsch {
695203bfb495SBarry Smith   Mat_MPIAIJ *maij;
695303bfb495SBarry Smith 
695403bfb495SBarry Smith   PetscFunctionBegin;
695508401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6956aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6957aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69589566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69599566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69609566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
696103bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69622205254eSKarl Rupp 
69638d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
696403bfb495SBarry Smith 
69659566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
69669566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
696703bfb495SBarry Smith 
69689566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
69699566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
697003bfb495SBarry Smith 
69719566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
69729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
69739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
69749566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
69759566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
69763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
697703bfb495SBarry Smith }
697803bfb495SBarry Smith 
69794e84afc0SStefano Zampini typedef struct {
69804e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
69814e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
69824e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
69834e84afc0SStefano Zampini 
69844e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
69854e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
69864e84afc0SStefano Zampini   PetscScalar *bufa;
69874e84afc0SStefano Zampini   Mat          P_oth;
69884e84afc0SStefano Zampini 
69894e84afc0SStefano Zampini   /* may take advantage of merging product->B */
6990ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
69914e84afc0SStefano Zampini 
6992ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
69934e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
69944e84afc0SStefano Zampini      of the temporary storage */
69954e84afc0SStefano Zampini   PetscBool reusesym;
69964e84afc0SStefano Zampini 
69974e84afc0SStefano Zampini   /* support for COO values insertion */
6998ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
6999ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
7000ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
7001ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
7002c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
7003c215019aSStefano Zampini   PetscMemType mtype;
70044e84afc0SStefano Zampini 
70054e84afc0SStefano Zampini   /* customization */
70064e84afc0SStefano Zampini   PetscBool abmerge;
7007abb89eb1SStefano Zampini   PetscBool P_oth_bind;
70084e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
70094e84afc0SStefano Zampini 
7010ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
7011d71ae5a4SJacob Faibussowitsch {
70124e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
70134e84afc0SStefano Zampini   PetscInt             i;
70144e84afc0SStefano Zampini 
70154e84afc0SStefano Zampini   PetscFunctionBegin;
70169566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70179566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70189566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70199566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70209566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70219566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70229566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
702348a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70249566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70259566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70269566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70279566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70289566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70299566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70314e84afc0SStefano Zampini }
70324e84afc0SStefano Zampini 
7033fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7034fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7035fff043a9SJunchao Zhang  */
7036d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7037d71ae5a4SJacob Faibussowitsch {
7038c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7039c215019aSStefano Zampini 
7040c215019aSStefano Zampini   PetscFunctionBegin;
70419566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7042c215019aSStefano Zampini   if (f) {
70439566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7044c215019aSStefano Zampini   } else {
7045c215019aSStefano Zampini     const PetscScalar *vv;
7046c215019aSStefano Zampini 
70479566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7048c215019aSStefano Zampini     if (n && idx) {
7049c215019aSStefano Zampini       PetscScalar    *w  = v;
7050c215019aSStefano Zampini       const PetscInt *oi = idx;
7051c215019aSStefano Zampini       PetscInt        j;
7052c215019aSStefano Zampini 
7053c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7054c215019aSStefano Zampini     } else {
70559566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7056c215019aSStefano Zampini     }
70579566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7058c215019aSStefano Zampini   }
70593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7060c215019aSStefano Zampini }
7061c215019aSStefano Zampini 
7062d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7063d71ae5a4SJacob Faibussowitsch {
70644e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
70654e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
70664e84afc0SStefano Zampini 
70674e84afc0SStefano Zampini   PetscFunctionBegin;
70684e84afc0SStefano Zampini   MatCheckProduct(C, 1);
706928b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
70704e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
70714e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
707248a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
707348a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
70744e84afc0SStefano Zampini   }
70754e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7076abb89eb1SStefano Zampini 
7077abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
707808401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
70799566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7080abb89eb1SStefano Zampini   }
70814e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
70826497c311SBarry Smith     PetscInt noff;
70834e84afc0SStefano Zampini 
70846497c311SBarry Smith     PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff));
70854e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
70864e84afc0SStefano Zampini     if (noff) {
70876497c311SBarry Smith       PetscInt nown;
7088c215019aSStefano Zampini 
70896497c311SBarry Smith       PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown));
70909566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
70919566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
70924e84afc0SStefano Zampini       n_o += noff;
70934e84afc0SStefano Zampini       n_d += nown;
70944e84afc0SStefano Zampini     } else {
7095c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7096c215019aSStefano Zampini 
70979566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
70984e84afc0SStefano Zampini       n_d += mm->nz;
70994e84afc0SStefano Zampini     }
71004e84afc0SStefano Zampini   }
7101c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
71029566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71039566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71044e84afc0SStefano Zampini   }
71059566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
71063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71074e84afc0SStefano Zampini }
71084e84afc0SStefano Zampini 
71094e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
71104e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7111d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7112d71ae5a4SJacob Faibussowitsch {
71134e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7114ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
71154e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
71164e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71174e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71184e84afc0SStefano Zampini   IS                     glob      = NULL;
71194e84afc0SStefano Zampini   const char            *prefix;
71204e84afc0SStefano Zampini   char                   pprefix[256];
71214e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
712282a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
712382a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7124ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7125ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7126ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7127ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7128ddea5d60SJunchao Zhang 
71294e84afc0SStefano Zampini   MatProductType ptype;
7130d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71314e84afc0SStefano Zampini   PetscMPIInt    size;
71324e84afc0SStefano Zampini 
71334e84afc0SStefano Zampini   PetscFunctionBegin;
71344e84afc0SStefano Zampini   MatCheckProduct(C, 1);
713528b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71364e84afc0SStefano Zampini   ptype = product->type;
7137b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7138fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7139fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7140fa046f9fSJunchao Zhang   }
71414e84afc0SStefano Zampini   switch (ptype) {
71424e84afc0SStefano Zampini   case MATPRODUCT_AB:
71434e84afc0SStefano Zampini     A          = product->A;
71444e84afc0SStefano Zampini     P          = product->B;
71454e84afc0SStefano Zampini     m          = A->rmap->n;
71464e84afc0SStefano Zampini     n          = P->cmap->n;
71474e84afc0SStefano Zampini     M          = A->rmap->N;
71484e84afc0SStefano Zampini     N          = P->cmap->N;
7149ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71504e84afc0SStefano Zampini     break;
71514e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71524e84afc0SStefano Zampini     P          = product->A;
71534e84afc0SStefano Zampini     A          = product->B;
71544e84afc0SStefano Zampini     m          = P->cmap->n;
71554e84afc0SStefano Zampini     n          = A->cmap->n;
71564e84afc0SStefano Zampini     M          = P->cmap->N;
71574e84afc0SStefano Zampini     N          = A->cmap->N;
71584e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71594e84afc0SStefano Zampini     break;
71604e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71614e84afc0SStefano Zampini     A          = product->A;
71624e84afc0SStefano Zampini     P          = product->B;
71634e84afc0SStefano Zampini     m          = P->cmap->n;
71644e84afc0SStefano Zampini     n          = P->cmap->n;
71654e84afc0SStefano Zampini     M          = P->cmap->N;
71664e84afc0SStefano Zampini     N          = P->cmap->N;
71674e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71684e84afc0SStefano Zampini     break;
7169d71ae5a4SJacob Faibussowitsch   default:
7170d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
71714e84afc0SStefano Zampini   }
71729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
71734e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
71744e84afc0SStefano Zampini 
71754e84afc0SStefano Zampini   /* defaults */
71764e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
71774e84afc0SStefano Zampini     mp[i]    = NULL;
71784e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
71794e84afc0SStefano Zampini     rmapt[i] = -1;
71804e84afc0SStefano Zampini     cmapt[i] = -1;
71814e84afc0SStefano Zampini     rmapa[i] = NULL;
71824e84afc0SStefano Zampini     cmapa[i] = NULL;
71834e84afc0SStefano Zampini   }
71844e84afc0SStefano Zampini 
71854e84afc0SStefano Zampini   /* customization */
71869566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
71874e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
71884e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
71894e84afc0SStefano Zampini     if (product->api_user) {
7190d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
71919566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
71929566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7193d0609cedSBarry Smith       PetscOptionsEnd();
71944e84afc0SStefano Zampini     } else {
7195d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
71969566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
71979566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7198d0609cedSBarry Smith       PetscOptionsEnd();
7199abb89eb1SStefano Zampini     }
7200abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7201abb89eb1SStefano Zampini     if (product->api_user) {
7202d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
72039566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7204d0609cedSBarry Smith       PetscOptionsEnd();
7205abb89eb1SStefano Zampini     } else {
7206d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
72079566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7208d0609cedSBarry Smith       PetscOptionsEnd();
72094e84afc0SStefano Zampini     }
72104e84afc0SStefano Zampini   }
72114e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
72124e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
72139566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
72149566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
72159566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
72169566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72179566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7218ddea5d60SJunchao Zhang 
7219ddea5d60SJunchao Zhang   cp = 0;
72204e84afc0SStefano Zampini   switch (ptype) {
72214e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72229566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72234e84afc0SStefano Zampini 
7224ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7225ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72264e84afc0SStefano Zampini       /* P is product->B */
72279566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72289566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72299566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72309566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72319566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72329566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72339566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72344e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72359566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72369566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72379566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72384e84afc0SStefano Zampini       rmapt[cp] = 1;
72394e84afc0SStefano Zampini       cmapt[cp] = 2;
72404e84afc0SStefano Zampini       cmapa[cp] = globidx;
72414e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72424e84afc0SStefano Zampini       cp++;
7243ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72449566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72459566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72469566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72479566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72489566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72499566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72504e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72519566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72529566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72534e84afc0SStefano Zampini       rmapt[cp] = 1;
72544e84afc0SStefano Zampini       cmapt[cp] = 1;
72554e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72564e84afc0SStefano Zampini       cp++;
72579566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72589566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72599566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72609566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72619566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72629566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72634e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72649566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72659566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72664e84afc0SStefano Zampini       rmapt[cp] = 1;
72674e84afc0SStefano Zampini       cmapt[cp] = 2;
72684e84afc0SStefano Zampini       cmapa[cp] = p->garray;
72694e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72704e84afc0SStefano Zampini       cp++;
72714e84afc0SStefano Zampini     }
7272ddea5d60SJunchao Zhang 
7273ddea5d60SJunchao Zhang     /* A_off * P_other */
72744e84afc0SStefano Zampini     if (mmdata->P_oth) {
72759566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
72769566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7277f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
72789566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
72799566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
72809566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72819566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72829566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72839566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72849566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72854e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72869566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72879566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72884e84afc0SStefano Zampini       rmapt[cp] = 1;
72894e84afc0SStefano Zampini       cmapt[cp] = 2;
72904e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
72914e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72924e84afc0SStefano Zampini       cp++;
72934e84afc0SStefano Zampini     }
72944e84afc0SStefano Zampini     break;
7295ddea5d60SJunchao Zhang 
72964e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
72974e84afc0SStefano Zampini     /* A is product->B */
72989566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7299ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
73009566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
73019566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73029566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73039566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73049566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73059566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73064e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73079566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73089566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73099566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73104e84afc0SStefano Zampini       rmapt[cp] = 2;
73114e84afc0SStefano Zampini       rmapa[cp] = globidx;
73124e84afc0SStefano Zampini       cmapt[cp] = 2;
73134e84afc0SStefano Zampini       cmapa[cp] = globidx;
73144e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73154e84afc0SStefano Zampini       cp++;
73164e84afc0SStefano Zampini     } else {
73179566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73189566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73199566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73209566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73219566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73229566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73234e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73249566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73259566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73269566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73274e84afc0SStefano Zampini       rmapt[cp] = 1;
73284e84afc0SStefano Zampini       cmapt[cp] = 2;
73294e84afc0SStefano Zampini       cmapa[cp] = globidx;
73304e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73314e84afc0SStefano Zampini       cp++;
73329566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73339566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73349566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73359566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73369566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73379566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73384e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73399566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73409566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73414e84afc0SStefano Zampini       rmapt[cp] = 2;
73424e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73434e84afc0SStefano Zampini       cmapt[cp] = 2;
73444e84afc0SStefano Zampini       cmapa[cp] = globidx;
73454e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73464e84afc0SStefano Zampini       cp++;
73474e84afc0SStefano Zampini     }
73484e84afc0SStefano Zampini     break;
73494e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73509566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73514e84afc0SStefano Zampini     /* P is product->B */
73529566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73539566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73549566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73559566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73569566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73579566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73589566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73594e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73609566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73619566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73629566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73634e84afc0SStefano Zampini     rmapt[cp] = 2;
73644e84afc0SStefano Zampini     rmapa[cp] = globidx;
73654e84afc0SStefano Zampini     cmapt[cp] = 2;
73664e84afc0SStefano Zampini     cmapa[cp] = globidx;
73674e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
73684e84afc0SStefano Zampini     cp++;
73694e84afc0SStefano Zampini     if (mmdata->P_oth) {
73709566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
73719566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7372f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73739566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73749566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73759566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73769566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73779566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73789566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73799566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73804e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73819566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73829566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73834e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
73844e84afc0SStefano Zampini       cp++;
73859566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
73869566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73879566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73889566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73899566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73909566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73914e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73929566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73939566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73944e84afc0SStefano Zampini       rmapt[cp] = 2;
73954e84afc0SStefano Zampini       rmapa[cp] = globidx;
73964e84afc0SStefano Zampini       cmapt[cp] = 2;
73974e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73984e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73994e84afc0SStefano Zampini       cp++;
74004e84afc0SStefano Zampini     }
74014e84afc0SStefano Zampini     break;
7402d71ae5a4SJacob Faibussowitsch   default:
7403d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
74044e84afc0SStefano Zampini   }
74054e84afc0SStefano Zampini   /* sanity check */
74069371c9d4SSatish Balay   if (size > 1)
74079371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
74084e84afc0SStefano Zampini 
74099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7410ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7411ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7412ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7413ddea5d60SJunchao Zhang   }
74144e84afc0SStefano Zampini   mmdata->cp             = cp;
74154e84afc0SStefano Zampini   C->product->data       = mmdata;
74164e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74174e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74184e84afc0SStefano Zampini 
7419c215019aSStefano Zampini   /* memory type */
7420c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74219566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7422d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74239566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7424c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7425d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74263214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7427c215019aSStefano Zampini 
74284e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7429ddea5d60SJunchao Zhang 
7430ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7431ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7432ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7433ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7434ddea5d60SJunchao Zhang   */
74354e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74364e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74374e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7438ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74394e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74404e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74414e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74424e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74434e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74444e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74454e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74464e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7447ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7448ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74494e84afc0SStefano Zampini       }
74504e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74514e84afc0SStefano Zampini   }
7452ddea5d60SJunchao Zhang 
7453ddea5d60SJunchao Zhang   /*
7454ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7455ddea5d60SJunchao Zhang 
7456ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7457ddea5d60SJunchao Zhang 
7458d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7459ddea5d60SJunchao Zhang 
7460ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7461ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7462ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7463ddea5d60SJunchao Zhang 
7464ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7465da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7466ddea5d60SJunchao Zhang   */
74679566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
74689566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7469ddea5d60SJunchao Zhang 
7470ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7471ddea5d60SJunchao Zhang   if (hasoffproc) {
74724e84afc0SStefano Zampini     PetscSF  msf;
74734e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
74744e84afc0SStefano Zampini 
74759566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
74769566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
74779566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7478ddea5d60SJunchao Zhang 
74794e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
74804e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
74814e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
74824e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7483ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
74844e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
74854e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
74864e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
74874e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
74884e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
74894e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
74904e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
74914e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
74924e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
74934e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
74944e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
74954e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
74964e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7497ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
74984e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
74994e84afc0SStefano Zampini               *coi++    = gr;
75004e84afc0SStefano Zampini               *idxoff++ = j;
75014e84afc0SStefano Zampini             }
75024e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
75034e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
75044e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75054e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
75064e84afc0SStefano Zampini             } else { /* offdiag */
75074e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75084e84afc0SStefano Zampini             }
75094e84afc0SStefano Zampini             ncoo_o += nz;
7510ddea5d60SJunchao Zhang           } else { /* this is a local row */
75114e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
75124e84afc0SStefano Zampini           }
75134e84afc0SStefano Zampini         }
75144e84afc0SStefano Zampini       }
75154e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
75164e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75174e84afc0SStefano Zampini     }
75184e84afc0SStefano Zampini 
75199566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75206497c311SBarry Smith     PetscInt incoo_o;
75216497c311SBarry Smith     PetscCall(PetscIntCast(ncoo_o, &incoo_o));
75226497c311SBarry Smith     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75239566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75249566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75254e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75269566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75279566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75289566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75299566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75309566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75319566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7532ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75339566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75344e84afc0SStefano Zampini     coo_i = coo_i2;
75354e84afc0SStefano Zampini     coo_j = coo_j2;
75364e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75374e84afc0SStefano Zampini     ncoo = ncoo_d;
75389566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7539c215019aSStefano Zampini 
75409566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75419566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75429566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75434e84afc0SStefano Zampini   }
7544c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75454e84afc0SStefano Zampini 
7546ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75474e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75484e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75494e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75504e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75514e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75524e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75534e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75544e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75554e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75564e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75574e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75584e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75594e84afc0SStefano Zampini 
75604e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7561ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7562ddea5d60SJunchao Zhang       /* fill coo_i */
75634e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75644e84afc0SStefano Zampini         const PetscInt gr = i + rs;
75654e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
75664e84afc0SStefano Zampini       }
7567ddea5d60SJunchao Zhang       /* fill coo_j */
7568ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
75699566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7570ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7571ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7572ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
75734e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
75744e84afc0SStefano Zampini       }
75754e84afc0SStefano Zampini       ncoo_d += mm->nz;
7576ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
75774e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75784e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
75794e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
75804e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7581ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
75824e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7583ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
75844e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
75854e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75864e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7587ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
75884e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75894e84afc0SStefano Zampini           }
75904e84afc0SStefano Zampini           ncoo_d += nz;
75914e84afc0SStefano Zampini         }
75924e84afc0SStefano Zampini       }
75934e84afc0SStefano Zampini     }
75944e84afc0SStefano Zampini   }
759548a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
75969566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
759748a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
75989566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7599ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
76009566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
76014e84afc0SStefano Zampini 
760239cfb508SMark Adams   /* set block sizes */
760339cfb508SMark Adams   A = product->A;
760439cfb508SMark Adams   P = product->B;
760539cfb508SMark Adams   switch (ptype) {
760639cfb508SMark Adams   case MATPRODUCT_PtAP:
760739cfb508SMark Adams     if (P->cmap->bs > 1) PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs));
760839cfb508SMark Adams     break;
760939cfb508SMark Adams   case MATPRODUCT_RARt:
761039cfb508SMark Adams     if (P->rmap->bs > 1) PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs));
761139cfb508SMark Adams     break;
761239cfb508SMark Adams   case MATPRODUCT_ABC:
761339cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, product->C));
761439cfb508SMark Adams     break;
761539cfb508SMark Adams   case MATPRODUCT_AB:
761639cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, P));
761739cfb508SMark Adams     break;
761839cfb508SMark Adams   case MATPRODUCT_AtB:
761939cfb508SMark Adams     if (A->cmap->bs > 1 || P->cmap->bs > 1) PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs));
762039cfb508SMark Adams     break;
762139cfb508SMark Adams   case MATPRODUCT_ABt:
762239cfb508SMark Adams     if (A->rmap->bs > 1 || P->rmap->bs > 1) PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs));
762339cfb508SMark Adams     break;
762439cfb508SMark Adams   default:
762539cfb508SMark Adams     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]);
762639cfb508SMark Adams   }
762739cfb508SMark Adams 
76284e84afc0SStefano Zampini   /* preallocate with COO data */
76299566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76309566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76324e84afc0SStefano Zampini }
76334e84afc0SStefano Zampini 
7634d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7635d71ae5a4SJacob Faibussowitsch {
76364e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76374e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76384e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7639abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76404e84afc0SStefano Zampini #else
76414e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76424e84afc0SStefano Zampini #endif
76434e84afc0SStefano Zampini 
76444e84afc0SStefano Zampini   PetscFunctionBegin;
76454e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76464e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
764748a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
764865e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7649abb89eb1SStefano Zampini     switch (product->type) {
7650abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7651abb89eb1SStefano Zampini       if (product->api_user) {
7652d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76539566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7654d0609cedSBarry Smith         PetscOptionsEnd();
7655abb89eb1SStefano Zampini       } else {
7656d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76579566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7658d0609cedSBarry Smith         PetscOptionsEnd();
7659abb89eb1SStefano Zampini       }
7660abb89eb1SStefano Zampini       break;
7661abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7662abb89eb1SStefano Zampini       if (product->api_user) {
7663d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76649566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7665d0609cedSBarry Smith         PetscOptionsEnd();
7666abb89eb1SStefano Zampini       } else {
7667d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76689566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7669d0609cedSBarry Smith         PetscOptionsEnd();
7670abb89eb1SStefano Zampini       }
7671abb89eb1SStefano Zampini       break;
7672abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7673abb89eb1SStefano Zampini       if (product->api_user) {
7674d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76759566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7676d0609cedSBarry Smith         PetscOptionsEnd();
7677abb89eb1SStefano Zampini       } else {
7678d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76799566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7680d0609cedSBarry Smith         PetscOptionsEnd();
7681abb89eb1SStefano Zampini       }
7682abb89eb1SStefano Zampini       break;
7683d71ae5a4SJacob Faibussowitsch     default:
7684d71ae5a4SJacob Faibussowitsch       break;
7685abb89eb1SStefano Zampini     }
7686abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7687abb89eb1SStefano Zampini   }
76884e84afc0SStefano Zampini #endif
76894e84afc0SStefano Zampini   if (match) {
76904e84afc0SStefano Zampini     switch (product->type) {
76914e84afc0SStefano Zampini     case MATPRODUCT_AB:
76924e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7693d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7694d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7695d71ae5a4SJacob Faibussowitsch       break;
7696d71ae5a4SJacob Faibussowitsch     default:
7697d71ae5a4SJacob Faibussowitsch       break;
76984e84afc0SStefano Zampini     }
76994e84afc0SStefano Zampini   }
77004e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
77019566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
77023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
770381824310SBarry Smith }
770498921bdaSJacob Faibussowitsch 
770598921bdaSJacob Faibussowitsch /*
770672833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
770772833a62Smarkadams4 
770872833a62Smarkadams4    n - the number of block indices in cc[]
770972833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
771072833a62Smarkadams4 */
7711d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7712d71ae5a4SJacob Faibussowitsch {
771372833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
771472833a62Smarkadams4   const PetscInt *idx;
771572833a62Smarkadams4 
771672833a62Smarkadams4   PetscFunctionBegin;
771772833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
771872833a62Smarkadams4   if (nidx) {
771972833a62Smarkadams4     cnt     = 0;
772072833a62Smarkadams4     cc[cnt] = idx[0] / bs;
772172833a62Smarkadams4     for (j = 1; j < nidx; j++) {
772272833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
772372833a62Smarkadams4     }
772472833a62Smarkadams4   }
772572833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
772672833a62Smarkadams4   *n = cnt + 1;
77273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
772872833a62Smarkadams4 }
772972833a62Smarkadams4 
773072833a62Smarkadams4 /*
773172833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
773272833a62Smarkadams4 
773372833a62Smarkadams4     ncollapsed - the number of block indices
773472833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
773572833a62Smarkadams4 */
7736d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7737d71ae5a4SJacob Faibussowitsch {
773872833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
773972833a62Smarkadams4 
774072833a62Smarkadams4   PetscFunctionBegin;
774172833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
774272833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
774372833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
774472833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77459371c9d4SSatish Balay     cprevtmp = cprev;
77469371c9d4SSatish Balay     cprev    = merged;
77479371c9d4SSatish Balay     merged   = cprevtmp;
774872833a62Smarkadams4   }
774972833a62Smarkadams4   *ncollapsed = nprev;
775072833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
775272833a62Smarkadams4 }
775372833a62Smarkadams4 
77542d776b49SBarry Smith /*
775572833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
775672833a62Smarkadams4 
775772833a62Smarkadams4  Input Parameter:
775872833a62Smarkadams4  . Amat - matrix
775972833a62Smarkadams4  - symmetrize - make the result symmetric
776072833a62Smarkadams4  + scale - scale with diagonal
776172833a62Smarkadams4 
776272833a62Smarkadams4  Output Parameter:
776372833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
776472833a62Smarkadams4 
776572833a62Smarkadams4 */
7766e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7767d71ae5a4SJacob Faibussowitsch {
776872833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
776972833a62Smarkadams4   MPI_Comm  comm;
777072833a62Smarkadams4   Mat       Gmat;
777172833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
777272833a62Smarkadams4   Mat       a, b, c;
777372833a62Smarkadams4   MatType   jtype;
777472833a62Smarkadams4 
777572833a62Smarkadams4   PetscFunctionBegin;
777672833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
777772833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
777872833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
777972833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
778072833a62Smarkadams4   nloc = (Iend - Istart) / bs;
778172833a62Smarkadams4 
778272833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
778372833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
778472833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
778572833a62Smarkadams4 
778672833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
778772833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
778872833a62Smarkadams4      implementation */
778972833a62Smarkadams4   if (bs > 1) {
779072833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
779172833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
779272833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
779372833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
779472833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
779572833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
779672833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
77972cf69117Smarkadams4       MatScalar *aa, val, *AA;
77982cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
77996497c311SBarry Smith 
78009371c9d4SSatish Balay       if (isseqaij) {
78019371c9d4SSatish Balay         a = Amat;
78029371c9d4SSatish Balay         b = NULL;
78039371c9d4SSatish Balay       } else {
780472833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
78059371c9d4SSatish Balay         a             = d->A;
78069371c9d4SSatish Balay         b             = d->B;
780772833a62Smarkadams4       }
780872833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
780932603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
781072833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
78112cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
781259ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
78136497c311SBarry Smith 
781459ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
781559ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
781659ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
781759ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
781872833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
781959ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
782059ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
782159ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
782259ee9f9fSPierre Jolivet             else {
782359ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
782459ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
782559ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
782672833a62Smarkadams4               }
782759ee9f9fSPierre Jolivet             }
782859ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
782959ee9f9fSPierre Jolivet           }
783059ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
783172833a62Smarkadams4           if (!ok) {
783272833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
783359ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
783472833a62Smarkadams4             goto old_bs;
783572833a62Smarkadams4           }
783672833a62Smarkadams4         }
783772833a62Smarkadams4       }
783872833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
783972833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
784072833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78412cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
784272833a62Smarkadams4       // diag
784372833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
784472833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
78456497c311SBarry Smith 
784672833a62Smarkadams4         ai = aseq->i;
784772833a62Smarkadams4         n  = ai[brow + 1] - ai[brow];
784872833a62Smarkadams4         aj = aseq->j + ai[brow];
78496497c311SBarry Smith         for (PetscInt k = 0; k < n; k += bs) {   // block columns
785072833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
785172833a62Smarkadams4           val        = 0;
7852e02fb3cdSMark Adams           if (index_size == 0) {
78536497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
785472833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
78556497c311SBarry Smith               for (PetscInt jj = 0; jj < bs; jj++) {    // columns in block
785672833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
785772833a62Smarkadams4               }
785872833a62Smarkadams4             }
7859e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78606497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78616497c311SBarry Smith               PetscInt ii = index[iii];
7862e02fb3cdSMark Adams               aa          = aseq->a + ai[brow + ii] + k;
78636497c311SBarry Smith               for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block
78646497c311SBarry Smith                 PetscInt jj = index[jjj];
7865cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7866e02fb3cdSMark Adams               }
7867e02fb3cdSMark Adams             }
7868e02fb3cdSMark Adams           }
7869835f2295SStefano Zampini           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
787072833a62Smarkadams4           AA[k / bs] = val;
787172833a62Smarkadams4         }
787272833a62Smarkadams4         grow = Istart / bs + brow / bs;
787366521e1fSMark Adams         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES));
787472833a62Smarkadams4       }
787572833a62Smarkadams4       // off-diag
787672833a62Smarkadams4       if (ismpiaij) {
787772833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
787872833a62Smarkadams4         const PetscScalar *vals;
787972833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
78806497c311SBarry Smith 
788172833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
788272833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
788372833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
78846497c311SBarry Smith           for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
788559ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
788672833a62Smarkadams4             AA[k / bs] = 0;
788772833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
788872833a62Smarkadams4           }
788972833a62Smarkadams4           nc = ncols / bs;
789072833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7891e02fb3cdSMark Adams           if (index_size == 0) {
78926497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
789372833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
78946497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
78956497c311SBarry Smith                 for (PetscInt jj = 0; jj < bs; jj++) { // cols in block
7896835f2295SStefano Zampini                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
789772833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
789872833a62Smarkadams4                 }
789972833a62Smarkadams4               }
790072833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
790172833a62Smarkadams4             }
7902e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
79036497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
79046497c311SBarry Smith               PetscInt ii = index[iii];
7905e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
79066497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
79076497c311SBarry Smith                 for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block
79086497c311SBarry Smith                   PetscInt jj = index[jjj];
7909e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7910e02fb3cdSMark Adams                 }
7911e02fb3cdSMark Adams               }
7912e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7913e02fb3cdSMark Adams             }
7914e02fb3cdSMark Adams           }
791572833a62Smarkadams4           grow = Istart / bs + brow / bs;
791666521e1fSMark Adams           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES));
791772833a62Smarkadams4         }
791872833a62Smarkadams4       }
791972833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
792072833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79212cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
792272833a62Smarkadams4     } else {
792372833a62Smarkadams4       const PetscScalar *vals;
792472833a62Smarkadams4       const PetscInt    *idx;
792572833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
792672833a62Smarkadams4     old_bs:
792772833a62Smarkadams4       /*
792872833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
792972833a62Smarkadams4        */
793072833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
793132603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
793272833a62Smarkadams4       if (isseqaij) {
793372833a62Smarkadams4         PetscInt max_d_nnz;
79346497c311SBarry Smith 
793572833a62Smarkadams4         /*
793672833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
793772833a62Smarkadams4          */
793872833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
793972833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
794072833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
794148a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
794272833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
794372833a62Smarkadams4       } else if (ismpiaij) {
794472833a62Smarkadams4         Mat             Daij, Oaij;
794572833a62Smarkadams4         const PetscInt *garray;
794672833a62Smarkadams4         PetscInt        max_d_nnz;
79476497c311SBarry Smith 
794872833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
794972833a62Smarkadams4         /*
795072833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
795172833a62Smarkadams4          */
795272833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
795372833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
795472833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
795548a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
795672833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
795772833a62Smarkadams4         /*
795872833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
795972833a62Smarkadams4          */
796072833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
796172833a62Smarkadams4           o_nnz[jj] = 0;
796272833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
796372833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
796472833a62Smarkadams4             o_nnz[jj] += ncols;
796572833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
796672833a62Smarkadams4           }
796772833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
796872833a62Smarkadams4         }
796972833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
797072833a62Smarkadams4       /* get scalar copy (norms) of matrix */
797172833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
797272833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
797372833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
797472833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
797572833a62Smarkadams4         PetscInt dest_row = Ii / bs;
79766497c311SBarry Smith 
797772833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
797872833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
797972833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
798072833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
79816497c311SBarry Smith 
798272833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
798372833a62Smarkadams4         }
798472833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
798572833a62Smarkadams4       }
798672833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
798772833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
798872833a62Smarkadams4     }
798972833a62Smarkadams4   } else {
79902d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
79912d776b49SBarry Smith     else {
79922d776b49SBarry Smith       Gmat = Amat;
79932d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
79942d776b49SBarry Smith     }
79959371c9d4SSatish Balay     if (isseqaij) {
79969371c9d4SSatish Balay       a = Gmat;
79979371c9d4SSatish Balay       b = NULL;
79989371c9d4SSatish Balay     } else {
799972833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
80009371c9d4SSatish Balay       a             = d->A;
80019371c9d4SSatish Balay       b             = d->B;
800272833a62Smarkadams4     }
80032d776b49SBarry Smith     if (filter >= 0 || scale) {
80042d776b49SBarry Smith       /* take absolute value of each entry */
800572833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
800672833a62Smarkadams4         MatInfo      info;
800772833a62Smarkadams4         PetscScalar *avals;
80086497c311SBarry Smith 
800972833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
801072833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
801172833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
801272833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
801372833a62Smarkadams4       }
801472833a62Smarkadams4     }
80152d776b49SBarry Smith   }
801672833a62Smarkadams4   if (symmetrize) {
8017b94d7dedSBarry Smith     PetscBool isset, issym;
80186497c311SBarry Smith 
8019b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
8020b94d7dedSBarry Smith     if (!isset || !issym) {
802172833a62Smarkadams4       Mat matTrans;
80226497c311SBarry Smith 
802372833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
80241fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
802572833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
802672833a62Smarkadams4     }
802772833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80282d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
802972833a62Smarkadams4   if (scale) {
803072833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
803172833a62Smarkadams4     Vec diag;
80326497c311SBarry Smith 
803372833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
803472833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
803572833a62Smarkadams4     PetscCall(VecReciprocal(diag));
803672833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
803772833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
803872833a62Smarkadams4     PetscCall(VecDestroy(&diag));
803972833a62Smarkadams4   }
804072833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80412d776b49SBarry Smith   if (filter >= 0) {
80422ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80432ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80442d776b49SBarry Smith   }
804572833a62Smarkadams4   *a_Gmat = Gmat;
80463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
804772833a62Smarkadams4 }
804872833a62Smarkadams4 
804972833a62Smarkadams4 /*
805098921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
805198921bdaSJacob Faibussowitsch */
805298921bdaSJacob Faibussowitsch 
805398921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80549566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80559566063dSJacob Faibussowitsch #undef PetscCall
80569371c9d4SSatish Balay #define PetscCall(...) \
80579371c9d4SSatish Balay   do { \
80585f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
805998921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
806098921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
806198921bdaSJacob Faibussowitsch       return; \
806298921bdaSJacob Faibussowitsch     } \
806398921bdaSJacob Faibussowitsch   } while (0)
806498921bdaSJacob Faibussowitsch 
806598921bdaSJacob Faibussowitsch #undef SETERRQ
80669371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80679371c9d4SSatish Balay   do { \
806898921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
806998921bdaSJacob Faibussowitsch     return; \
807098921bdaSJacob Faibussowitsch   } while (0)
807198921bdaSJacob Faibussowitsch 
807298921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
807398921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
807498921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
807598921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
807698921bdaSJacob Faibussowitsch #else
807798921bdaSJacob Faibussowitsch #endif
8078d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8079d71ae5a4SJacob Faibussowitsch {
808098921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
808198921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
808298921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
808398921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
808498921bdaSJacob Faibussowitsch   PetscScalar value;
808598921bdaSJacob Faibussowitsch 
808698921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
808798921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80885f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
808998921bdaSJacob Faibussowitsch   {
809098921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
809198921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
809298921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
809398921bdaSJacob Faibussowitsch 
809498921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
809598921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
809698921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
809798921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
809898921bdaSJacob Faibussowitsch     MatScalar  *aa;
8099f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
810098921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
810198921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
810298921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
810398921bdaSJacob Faibussowitsch     MatScalar  *ba;
810498921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
810598921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
810698921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
810798921bdaSJacob Faibussowitsch 
810898921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
810998921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
811098921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
811198921bdaSJacob Faibussowitsch 
811298921bdaSJacob Faibussowitsch     PetscFunctionBegin;
81139566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
81149566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
811598921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
811698921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
81176bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
811898921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
811998921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
812098921bdaSJacob Faibussowitsch         lastcol1 = -1;
812198921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
812298921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
812398921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
812498921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
812598921bdaSJacob Faibussowitsch         low1     = 0;
812698921bdaSJacob Faibussowitsch         high1    = nrow1;
812798921bdaSJacob Faibussowitsch         lastcol2 = -1;
812898921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
812998921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
813098921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
813198921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
813298921bdaSJacob Faibussowitsch         low2     = 0;
813398921bdaSJacob Faibussowitsch         high2    = nrow2;
813498921bdaSJacob Faibussowitsch 
813598921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
813698921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
813798921bdaSJacob Faibussowitsch           else value = v[i + j * m];
813898921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
813998921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
814098921bdaSJacob Faibussowitsch             col = in[j] - cstart;
814198921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
814298921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
814398921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
814463a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
814598921bdaSJacob Faibussowitsch           } else {
814698921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
814748a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
814898921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8149eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
815098921bdaSJacob Faibussowitsch               col--;
815198921bdaSJacob Faibussowitsch #else
815298921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
815398921bdaSJacob Faibussowitsch #endif
8154f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
8155eb14dd14SAlex Lindsay                 PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
815698921bdaSJacob Faibussowitsch                 col = in[j];
815798921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
815898921bdaSJacob Faibussowitsch                 B        = aij->B;
815998921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81609371c9d4SSatish Balay                 bimax    = b->imax;
81619371c9d4SSatish Balay                 bi       = b->i;
81629371c9d4SSatish Balay                 bilen    = b->ilen;
81639371c9d4SSatish Balay                 bj       = b->j;
816498921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
816598921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
816698921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
816798921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
816898921bdaSJacob Faibussowitsch                 low2     = 0;
816998921bdaSJacob Faibussowitsch                 high2    = nrow2;
817098921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
817198921bdaSJacob Faibussowitsch                 ba       = b->a;
817298921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
817398921bdaSJacob Faibussowitsch               }
817498921bdaSJacob Faibussowitsch             } else col = in[j];
817598921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
817698921bdaSJacob Faibussowitsch           }
817798921bdaSJacob Faibussowitsch         }
817898921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
817998921bdaSJacob Faibussowitsch         if (roworiented) {
81809566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
818198921bdaSJacob Faibussowitsch         } else {
81829566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
818398921bdaSJacob Faibussowitsch         }
818498921bdaSJacob Faibussowitsch       }
818598921bdaSJacob Faibussowitsch     }
81869566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81879566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
818898921bdaSJacob Faibussowitsch   }
818998921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
819098921bdaSJacob Faibussowitsch }
819172833a62Smarkadams4 
819298921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
819398921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
819498921bdaSJacob Faibussowitsch  * original definitions */
81959566063dSJacob Faibussowitsch #undef PetscCall
819698921bdaSJacob Faibussowitsch #undef SETERRQ
8197