1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 1026cec326SBarry Smith { 1126cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1226cec326SBarry Smith 1326cec326SBarry Smith PetscFunctionBegin; 1426cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1526cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1626cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 1726cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 1826cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2026cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2126cec326SBarry Smith #else 2226cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 2326cec326SBarry Smith #endif 2426cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 2526cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 2626cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 2726cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 2826cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 2926cec326SBarry Smith 3026cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3126cec326SBarry Smith 3226cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 3326cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 3426cec326SBarry Smith 3526cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 4126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 4326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 4726cec326SBarry Smith #endif 4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 4926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 5026cec326SBarry Smith #endif 5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 5226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 5326cec326SBarry Smith #endif 5426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 5726cec326SBarry Smith #endif 5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 6026cec326SBarry Smith #endif 6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 6226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 6326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 6426cec326SBarry Smith #endif 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 6926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 7326cec326SBarry Smith #endif 7426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 7626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 7726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 7926cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 8026cec326SBarry Smith } 8126cec326SBarry Smith 8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 8326cec326SBarry Smith #define TYPE AIJ 8426cec326SBarry Smith #define TYPE_AIJ 8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 8626cec326SBarry Smith #undef TYPE 8726cec326SBarry Smith #undef TYPE_AIJ 8826cec326SBarry Smith 89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 90d71ae5a4SJacob Faibussowitsch { 918a9c020eSBarry Smith Mat B; 928a9c020eSBarry Smith 938a9c020eSBarry Smith PetscFunctionBegin; 948a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 958a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 968a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 97501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 998a9c020eSBarry Smith } 1008a9c020eSBarry Smith 101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 102d71ae5a4SJacob Faibussowitsch { 1038a9c020eSBarry Smith Mat B; 1048a9c020eSBarry Smith 1058a9c020eSBarry Smith PetscFunctionBegin; 1068a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1078a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 108501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1108a9c020eSBarry Smith } 1118a9c020eSBarry Smith 11201bebe75SBarry Smith /*MC 11301bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 11401bebe75SBarry Smith 11511a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 11611a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 11711a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 11801bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 11901bebe75SBarry Smith the above preallocation routines for simplicity. 12001bebe75SBarry Smith 12127430b45SBarry Smith Options Database Key: 12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 12301bebe75SBarry Smith 12411a5261eSBarry Smith Developer Note: 1252ef1f0ffSBarry Smith Level: beginner 1262ef1f0ffSBarry Smith 12711a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 12801bebe75SBarry Smith enough exist. 12901bebe75SBarry Smith 1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 13101bebe75SBarry Smith M*/ 13201bebe75SBarry Smith 13301bebe75SBarry Smith /*MC 13401bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 13501bebe75SBarry Smith 13611a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 13711a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 13811a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 13901bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14001bebe75SBarry Smith the above preallocation routines for simplicity. 14101bebe75SBarry Smith 14227430b45SBarry Smith Options Database Key: 14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 14401bebe75SBarry Smith 14501bebe75SBarry Smith Level: beginner 14601bebe75SBarry Smith 1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 14801bebe75SBarry Smith M*/ 14901bebe75SBarry Smith 150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 151d71ae5a4SJacob Faibussowitsch { 152f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 153f74ef234SStefano Zampini 154f74ef234SStefano Zampini PetscFunctionBegin; 155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 156b470e4b4SRichard Tran Mills A->boundtocpu = flg; 157f74ef234SStefano Zampini #endif 1581baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1591baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1603120d049SRichard Tran Mills 1613120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1623120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1633120d049SRichard Tran Mills * to differ from the parent matrix. */ 1641baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1651baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 167f74ef234SStefano Zampini } 168f74ef234SStefano Zampini 169ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 170d71ae5a4SJacob Faibussowitsch { 17126bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 17226bda2c4Sstefano_zampini 17326bda2c4Sstefano_zampini PetscFunctionBegin; 17446533700Sstefano_zampini if (mat->A) { 1759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 17746533700Sstefano_zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17926bda2c4Sstefano_zampini } 18026bda2c4Sstefano_zampini 181ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 182d71ae5a4SJacob Faibussowitsch { 18327d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 18427d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 18527d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 18627d4218bSShri Abhyankar const PetscInt *ia, *ib; 187ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 18827d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 18927d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 19027d4218bSShri Abhyankar 19127d4218bSShri Abhyankar PetscFunctionBegin; 192f4259b30SLisandro Dalcin *keptrows = NULL; 193ce496241SStefano Zampini 19427d4218bSShri Abhyankar ia = a->i; 19527d4218bSShri Abhyankar ib = b->i; 1969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 1979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 19827d4218bSShri Abhyankar for (i = 0; i < m; i++) { 19927d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 20027d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 20127d4218bSShri Abhyankar if (!na && !nb) { 20227d4218bSShri Abhyankar cnt++; 20327d4218bSShri Abhyankar goto ok1; 20427d4218bSShri Abhyankar } 205ce496241SStefano Zampini aa = aav + ia[i]; 20627d4218bSShri Abhyankar for (j = 0; j < na; j++) { 20727d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 20827d4218bSShri Abhyankar } 2098e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 21027d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 21127d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 21227d4218bSShri Abhyankar } 21327d4218bSShri Abhyankar cnt++; 21427d4218bSShri Abhyankar ok1:; 21527d4218bSShri Abhyankar } 2161c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 217ce496241SStefano Zampini if (!n0rows) { 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 221ce496241SStefano Zampini } 2229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 22327d4218bSShri Abhyankar cnt = 0; 22427d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22527d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22627d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22727d4218bSShri Abhyankar if (!na && !nb) continue; 228ce496241SStefano Zampini aa = aav + ia[i]; 22927d4218bSShri Abhyankar for (j = 0; j < na; j++) { 23027d4218bSShri Abhyankar if (aa[j] != 0.0) { 23127d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23227d4218bSShri Abhyankar goto ok2; 23327d4218bSShri Abhyankar } 23427d4218bSShri Abhyankar } 2358e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23627d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23727d4218bSShri Abhyankar if (bb[j] != 0.0) { 23827d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23927d4218bSShri Abhyankar goto ok2; 24027d4218bSShri Abhyankar } 24127d4218bSShri Abhyankar } 24227d4218bSShri Abhyankar ok2:; 24327d4218bSShri Abhyankar } 2449566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24827d4218bSShri Abhyankar } 24927d4218bSShri Abhyankar 250ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 251d71ae5a4SJacob Faibussowitsch { 25299e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 25394342113SStefano Zampini PetscBool cong; 25499e65526SBarry Smith 25599e65526SBarry Smith PetscFunctionBegin; 2569566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 25794342113SStefano Zampini if (Y->assembled && cong) { 2589566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 25999e65526SBarry Smith } else { 2609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 26199e65526SBarry Smith } 2623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26399e65526SBarry Smith } 26499e65526SBarry Smith 265ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 266d71ae5a4SJacob Faibussowitsch { 267f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 268f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 269f1f41ecbSJed Brown 270f1f41ecbSJed Brown PetscFunctionBegin; 2710298fd71SBarry Smith *zrows = NULL; 2729566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2739566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 274f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2759566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 277f1f41ecbSJed Brown } 278f1f41ecbSJed Brown 279ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 280d71ae5a4SJacob Faibussowitsch { 2810716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 282a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 2830716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 2840716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 2850716a85fSBarry Smith PetscReal *work; 286ce496241SStefano Zampini const PetscScalar *dummy; 2870716a85fSBarry Smith 2880716a85fSBarry Smith PetscFunctionBegin; 2899566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 2909566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 2919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 2929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 2939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 2949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 295857cbf51SRichard Tran Mills if (type == NORM_2) { 296ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 297ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 298857cbf51SRichard Tran Mills } else if (type == NORM_1) { 299ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 300ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 301857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 302ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 303ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 304857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 305ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 306ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 307857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 308ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 309ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 310857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 311857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 3121c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3130716a85fSBarry Smith } else { 3141c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3150716a85fSBarry Smith } 3169566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 319857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 320a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3210716a85fSBarry Smith } 3223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3230716a85fSBarry Smith } 3240716a85fSBarry Smith 325ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 326d71ae5a4SJacob Faibussowitsch { 327e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 328e52d2c62SBarry Smith IS sis, gis; 329e52d2c62SBarry Smith const PetscInt *isis, *igis; 330e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 331e52d2c62SBarry Smith 332e52d2c62SBarry Smith PetscFunctionBegin; 3339566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3349566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3359566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3369566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3379566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 339e52d2c62SBarry Smith 3409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3419566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3429566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 343e52d2c62SBarry Smith n = ngis + nsis; 3449566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3459566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 346e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3479566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 348e52d2c62SBarry Smith 3499566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 354e52d2c62SBarry Smith } 355e52d2c62SBarry Smith 356dd6ea824SBarry Smith /* 3570f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3589e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3590f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3600f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 36172fa4726SStefano Zampini has an order N integer array but is fast to access. 3629e25ed09SBarry Smith */ 363d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 364d71ae5a4SJacob Faibussowitsch { 36544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 366d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 367dbb450caSBarry Smith 3683a40ed3dSBarry Smith PetscFunctionBegin; 36908401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 370aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 371eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 372c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 373b1fc9764SSatish Balay #else 3749566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 375905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 376b1fc9764SSatish Balay #endif 3773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3789e25ed09SBarry Smith } 3799e25ed09SBarry Smith 380d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 381a8f51744SPierre Jolivet do { \ 382db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 383db4deed7SKarl Rupp else high1 = nrow1; \ 384fd3458f5SBarry Smith lastcol1 = col; \ 385fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 386fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 387fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 388fd3458f5SBarry Smith else low1 = t; \ 389ba4e3ef2SSatish Balay } \ 390fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 391fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 392fd3458f5SBarry Smith if (rp1[_i] == col) { \ 3930c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 3940c0d7e18SFande Kong ap1[_i] += value; \ 3950c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 3960c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 3979371c9d4SSatish Balay } else ap1[_i] = value; \ 39830770e4dSSatish Balay goto a_noinsert; \ 3990520107fSSatish Balay } \ 4000520107fSSatish Balay } \ 4019371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4029371c9d4SSatish Balay low1 = 0; \ 4039371c9d4SSatish Balay high1 = nrow1; \ 4049371c9d4SSatish Balay goto a_noinsert; \ 4059371c9d4SSatish Balay } \ 4069371c9d4SSatish Balay if (nonew == 1) { \ 4079371c9d4SSatish Balay low1 = 0; \ 4089371c9d4SSatish Balay high1 = nrow1; \ 4099371c9d4SSatish Balay goto a_noinsert; \ 4109371c9d4SSatish Balay } \ 41108401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 412fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4139371c9d4SSatish Balay N = nrow1++ - 1; \ 4149371c9d4SSatish Balay a->nz++; \ 4159371c9d4SSatish Balay high1++; \ 4160520107fSSatish Balay /* shift up all the later entries in this row */ \ 4179566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4189566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 419fd3458f5SBarry Smith rp1[_i] = col; \ 420fd3458f5SBarry Smith ap1[_i] = value; \ 42130770e4dSSatish Balay a_noinsert:; \ 422fd3458f5SBarry Smith ailen[row] = nrow1; \ 423a8f51744SPierre Jolivet } while (0) 4240a198c4cSBarry Smith 425d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 426a8f51744SPierre Jolivet do { \ 427db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 428db4deed7SKarl Rupp else high2 = nrow2; \ 429fd3458f5SBarry Smith lastcol2 = col; \ 430fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 431fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 432fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 433fd3458f5SBarry Smith else low2 = t; \ 434ba4e3ef2SSatish Balay } \ 435fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 436fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 437fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4380c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4390c0d7e18SFande Kong ap2[_i] += value; \ 4400c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4419371c9d4SSatish Balay } else ap2[_i] = value; \ 44230770e4dSSatish Balay goto b_noinsert; \ 44330770e4dSSatish Balay } \ 44430770e4dSSatish Balay } \ 4459371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4469371c9d4SSatish Balay low2 = 0; \ 4479371c9d4SSatish Balay high2 = nrow2; \ 4489371c9d4SSatish Balay goto b_noinsert; \ 4499371c9d4SSatish Balay } \ 4509371c9d4SSatish Balay if (nonew == 1) { \ 4519371c9d4SSatish Balay low2 = 0; \ 4529371c9d4SSatish Balay high2 = nrow2; \ 4539371c9d4SSatish Balay goto b_noinsert; \ 4549371c9d4SSatish Balay } \ 45508401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 456fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4579371c9d4SSatish Balay N = nrow2++ - 1; \ 4589371c9d4SSatish Balay b->nz++; \ 4599371c9d4SSatish Balay high2++; \ 46030770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4619566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4629566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 463fd3458f5SBarry Smith rp2[_i] = col; \ 464fd3458f5SBarry Smith ap2[_i] = value; \ 46530770e4dSSatish Balay b_noinsert:; \ 466fd3458f5SBarry Smith bilen[row] = nrow2; \ 467a8f51744SPierre Jolivet } while (0) 46830770e4dSSatish Balay 469ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 470d71ae5a4SJacob Faibussowitsch { 4712fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4722fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4732fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 474fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4752fd7e33dSBarry Smith 4762fd7e33dSBarry Smith PetscFunctionBegin; 4772fd7e33dSBarry Smith /* code only works for square matrices A */ 4782fd7e33dSBarry Smith 4792fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 4809566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 4812fd7e33dSBarry Smith row = row - diag; 4822fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 4832fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 4842fd7e33dSBarry Smith } 485fff043a9SJunchao Zhang if (l) { 4869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 4879566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 4889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 489fff043a9SJunchao Zhang } 4902fd7e33dSBarry Smith 4912fd7e33dSBarry Smith /* diagonal part */ 492fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 4939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 4949566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row]))); 4959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 496fff043a9SJunchao Zhang } 4972fd7e33dSBarry Smith 4982fd7e33dSBarry Smith /* right of diagonal part */ 499fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5019566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 503fff043a9SJunchao Zhang } 5043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5052fd7e33dSBarry Smith } 5062fd7e33dSBarry Smith 507d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 508d71ae5a4SJacob Faibussowitsch { 50944a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 510071fcb05SBarry Smith PetscScalar value = 0.0; 511d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 512d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 513ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5148a729477SBarry Smith 5150520107fSSatish Balay /* Some Variables required in the macro */ 5164ee7247eSSatish Balay Mat A = aij->A; 5174ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 51857809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 519ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 52030770e4dSSatish Balay Mat B = aij->B; 52130770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 522d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 523ce496241SStefano Zampini MatScalar *aa, *ba; 524fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5258d76821aSHong Zhang PetscInt nonew; 526a77337e4SBarry Smith MatScalar *ap1, *ap2; 5274ee7247eSSatish Balay 5283a40ed3dSBarry Smith PetscFunctionBegin; 5299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5318a729477SBarry Smith for (i = 0; i < m; i++) { 5325ef9f2a5SBarry Smith if (im[i] < 0) continue; 53308401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5344b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5354b0e389bSBarry Smith row = im[i] - rstart; 536fd3458f5SBarry Smith lastcol1 = -1; 5378e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5388e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 539fd3458f5SBarry Smith rmax1 = aimax[row]; 540fd3458f5SBarry Smith nrow1 = ailen[row]; 541fd3458f5SBarry Smith low1 = 0; 542fd3458f5SBarry Smith high1 = nrow1; 543fd3458f5SBarry Smith lastcol2 = -1; 5448e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5458e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 546fd3458f5SBarry Smith rmax2 = bimax[row]; 547d498b1e9SBarry Smith nrow2 = bilen[row]; 548fd3458f5SBarry Smith low2 = 0; 549fd3458f5SBarry Smith high2 = nrow2; 550fd3458f5SBarry Smith 5511eb62cbbSBarry Smith for (j = 0; j < n; j++) { 552071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 553c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 554fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 555fd3458f5SBarry Smith col = in[j] - cstart; 5568d76821aSHong Zhang nonew = a->nonew; 557d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 558f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 559f7d195e4SLawrence Mitchell continue; 560f7d195e4SLawrence Mitchell } else { 561f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 562227d817aSBarry Smith if (mat->was_assembled) { 56348a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 564aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 565eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 566fa46199cSSatish Balay col--; 567b1fc9764SSatish Balay #else 568905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 569b1fc9764SSatish Balay #endif 570f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 5719566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); /* Change aij->B from reduced/local format to expanded/global format */ 5724b0e389bSBarry Smith col = in[j]; 5739bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 574f9508a3cSSatish Balay B = aij->B; 575f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5769371c9d4SSatish Balay bimax = b->imax; 5779371c9d4SSatish Balay bi = b->i; 5789371c9d4SSatish Balay bilen = b->ilen; 5799371c9d4SSatish Balay bj = b->j; 5809371c9d4SSatish Balay ba = b->a; 581*cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 582*cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 583d498b1e9SBarry Smith rmax2 = bimax[row]; 584d498b1e9SBarry Smith nrow2 = bilen[row]; 585d498b1e9SBarry Smith low2 = 0; 586d498b1e9SBarry Smith high2 = nrow2; 587d0f46423SBarry Smith bm = aij->B->rmap->n; 588f9508a3cSSatish Balay ba = b->a; 589d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 590f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 5919566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 59298921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 5930587a0fcSBarry Smith } 594c48de900SBarry Smith } else col = in[j]; 5958d76821aSHong Zhang nonew = b->nonew; 596d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 5971eb62cbbSBarry Smith } 5981eb62cbbSBarry Smith } 5995ef9f2a5SBarry Smith } else { 60028b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 60190f02eecSBarry Smith if (!aij->donotstash) { 6025080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 603d36fbae8SSatish Balay if (roworiented) { 6048e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 605d36fbae8SSatish Balay } else { 6068e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6074b0e389bSBarry Smith } 6081eb62cbbSBarry Smith } 6098a729477SBarry Smith } 61090f02eecSBarry Smith } 6115519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6129566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6148a729477SBarry Smith } 6158a729477SBarry Smith 6162b08fdbeSandi selinger /* 617904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6182b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 619904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6202b08fdbeSandi selinger */ 621d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 622d71ae5a4SJacob Faibussowitsch { 623904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 624904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6254cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 626904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 627904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 628904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 629904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 630904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6316dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 632904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 633904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 634904d1e70Sandi selinger 635904d1e70Sandi selinger PetscFunctionBegin; 636904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 637904d1e70Sandi selinger for (j = 0; j < am; j++) { 638904d1e70Sandi selinger dnz = onz = 0; 639904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6406dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 641904d1e70Sandi selinger /* If column is in the diagonal */ 642904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 643904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 644904d1e70Sandi selinger dnz++; 645904d1e70Sandi selinger } else { /* off-diagonal entries */ 646904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 647904d1e70Sandi selinger onz++; 648904d1e70Sandi selinger } 649904d1e70Sandi selinger } 650904d1e70Sandi selinger ailen[j] = dnz; 651904d1e70Sandi selinger bilen[j] = onz; 652904d1e70Sandi selinger } 6533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 654904d1e70Sandi selinger } 655904d1e70Sandi selinger 656904d1e70Sandi selinger /* 657904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 658904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6591de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6601de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6611de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 662904d1e70Sandi selinger */ 663d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 664d71ae5a4SJacob Faibussowitsch { 6653a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6663a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6674cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 668f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6693a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6703a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6713a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6723a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6733a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6746dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6751de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 676904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 677904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 6783a063d27Sandi selinger 6793a063d27Sandi selinger PetscFunctionBegin; 6803a063d27Sandi selinger /* Iterate over all rows of the matrix */ 6813a063d27Sandi selinger for (j = 0; j < am; j++) { 682904d1e70Sandi selinger dnz_row = onz_row = 0; 683904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 684904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 685e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 686e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 687ae8e66a0Sandi selinger /* If column is in the diagonal */ 6883a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 689904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 690904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 691904d1e70Sandi selinger dnz_row++; 692ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 693904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 694904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 695904d1e70Sandi selinger onz_row++; 6963a063d27Sandi selinger } 6973a063d27Sandi selinger } 698904d1e70Sandi selinger ailen[j] = dnz_row; 699904d1e70Sandi selinger bilen[j] = onz_row; 7003a063d27Sandi selinger } 7013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7023a063d27Sandi selinger } 7033a063d27Sandi selinger 704ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 705d71ae5a4SJacob Faibussowitsch { 706b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 707d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 708d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 709b49de8d1SLois Curfman McInnes 7103a40ed3dSBarry Smith PetscFunctionBegin; 711b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 71254c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 71354c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 71485835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 715b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 716b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 71754c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 71854c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 719b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 720b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7219566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 722fa852ad4SSatish Balay } else { 72348a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 724aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 725eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 726fa46199cSSatish Balay col--; 727b1fc9764SSatish Balay #else 728905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 729b1fc9764SSatish Balay #endif 730e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 73148a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 732b49de8d1SLois Curfman McInnes } 733b49de8d1SLois Curfman McInnes } 734b49de8d1SLois Curfman McInnes } 7353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 736b49de8d1SLois Curfman McInnes } 737bc5ccf88SSatish Balay 738ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 739d71ae5a4SJacob Faibussowitsch { 740bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 741b1d57f15SBarry Smith PetscInt nstash, reallocs; 742bc5ccf88SSatish Balay 743bc5ccf88SSatish Balay PetscFunctionBegin; 7443ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 745bc5ccf88SSatish Balay 7469566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7479566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7489566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 750bc5ccf88SSatish Balay } 751bc5ccf88SSatish Balay 752d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 753d71ae5a4SJacob Faibussowitsch { 754bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 755b1d57f15SBarry Smith PetscMPIInt n; 756b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 757e44c0bd4SBarry Smith PetscInt *row, *col; 758ace3abfcSBarry Smith PetscBool other_disassembled; 75987828ca2SBarry Smith PetscScalar *val; 760bc5ccf88SSatish Balay 76191c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7626e111a19SKarl Rupp 763bc5ccf88SSatish Balay PetscFunctionBegin; 7644cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 765a2d1c673SSatish Balay while (1) { 7669566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 767a2d1c673SSatish Balay if (!flg) break; 768a2d1c673SSatish Balay 769bc5ccf88SSatish Balay for (i = 0; i < n;) { 770bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7712205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7722205254eSKarl Rupp if (row[j] != rstart) break; 7732205254eSKarl Rupp } 774bc5ccf88SSatish Balay if (j < n) ncols = j - i; 775bc5ccf88SSatish Balay else ncols = n - i; 776bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7779566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 778bc5ccf88SSatish Balay i = j; 779bc5ccf88SSatish Balay } 780bc5ccf88SSatish Balay } 7819566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 782bc5ccf88SSatish Balay } 7838c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 784c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 7859ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 7869ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 7879566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 7889566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 7899ecce9b1SRichard Tran Mills } 790e2cf4d64SStefano Zampini #endif 7919566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 7929566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 793bc5ccf88SSatish Balay 794bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 795071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 796bc5ccf88SSatish Balay /* 797bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 798bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 799bc5ccf88SSatish Balay */ 800bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 8015f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 80235cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 8039566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 804ad59fb31SSatish Balay } 805ad59fb31SSatish Balay } 80648a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8079566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8088c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 809c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 810e2cf4d64SStefano Zampini #endif 8119566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8129566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 813bc5ccf88SSatish Balay 8149566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8152205254eSKarl Rupp 816f4259b30SLisandro Dalcin aij->rowvalues = NULL; 817a30b2313SHong Zhang 8189566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 819e56f5c9eSBarry Smith 8204f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 821f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 822e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 8231c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 824e56f5c9eSBarry Smith } 8258c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 826c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 827e2cf4d64SStefano Zampini #endif 8283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 829bc5ccf88SSatish Balay } 830bc5ccf88SSatish Balay 831ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 832d71ae5a4SJacob Faibussowitsch { 83344a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8343a40ed3dSBarry Smith 8353a40ed3dSBarry Smith PetscFunctionBegin; 8369566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8379566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8391eb62cbbSBarry Smith } 8401eb62cbbSBarry Smith 841ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 842d71ae5a4SJacob Faibussowitsch { 8431b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8441b1dd7adSMatthew G. Knepley PetscInt *lrows; 8456e520ac8SStefano Zampini PetscInt r, len; 8469939a2d1SBarry Smith PetscBool cong; 8471eb62cbbSBarry Smith 8483a40ed3dSBarry Smith PetscFunctionBegin; 8496e520ac8SStefano Zampini /* get locally owned rows */ 8509566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8519566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 852dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 85397b48c8fSBarry Smith if (x && b) { 8541b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8551b1dd7adSMatthew G. Knepley PetscScalar *bb; 8561b1dd7adSMatthew G. Knepley 85728b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8589566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8599566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8601b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8619566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8629566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 86397b48c8fSBarry Smith } 864a92ad425SStefano Zampini 865a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8669566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8679566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 868a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 869a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 870a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 871a92ad425SStefano Zampini PetscInt nnwA, nnwB; 872a92ad425SStefano Zampini PetscBool nnzA, nnzB; 873a92ad425SStefano Zampini 874a92ad425SStefano Zampini nnwA = aijA->nonew; 875a92ad425SStefano Zampini nnwB = aijB->nonew; 876a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 877a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 878a92ad425SStefano Zampini if (!nnzA) { 8799566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 880a92ad425SStefano Zampini aijA->nonew = 0; 881a92ad425SStefano Zampini } 882a92ad425SStefano Zampini if (!nnzB) { 8839566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 884a92ad425SStefano Zampini aijB->nonew = 0; 885a92ad425SStefano Zampini } 886a92ad425SStefano Zampini /* Must zero here before the next loop */ 8879566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 8889566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 8891b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 8901b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 891a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 8929566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 893e2d53e46SBarry Smith } 894a92ad425SStefano Zampini aijA->nonew = nnwA; 895a92ad425SStefano Zampini aijB->nonew = nnwB; 8966eb55b6aSBarry Smith } else { 8979566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 8989566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 8996eb55b6aSBarry Smith } 9009566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9019566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9029566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9034f9cfa9eSBarry Smith 9049939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 905f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9069939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 9079939a2d1SBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9089939a2d1SBarry Smith } 9093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9101eb62cbbSBarry Smith } 9111eb62cbbSBarry Smith 912ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 913d71ae5a4SJacob Faibussowitsch { 9149c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9155ba17502SJed Brown PetscMPIInt n = A->rmap->n; 916131c27b5Sprj- PetscInt i, j, r, m, len = 0; 91754bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 918131c27b5Sprj- PetscMPIInt p = 0; 91954bd4135SMatthew G. Knepley PetscSFNode *rrows; 92054bd4135SMatthew G. Knepley PetscSF sf; 9219c7c4993SBarry Smith const PetscScalar *xx; 922fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 923564f14d6SBarry Smith Vec xmask, lmask; 924564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 925564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 926564f14d6SBarry Smith PetscScalar *aa; 9279c7c4993SBarry Smith 9289c7c4993SBarry Smith PetscFunctionBegin; 92954bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 93154bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 93354bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 93454bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 935aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9365ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9379566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9385ba17502SJed Brown } 93954bd4135SMatthew G. Knepley rrows[r].rank = p; 94054bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9419c7c4993SBarry Smith } 9429566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9439566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 94454bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9459566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9469566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9479566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 94854bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9499371c9d4SSatish Balay for (r = 0; r < n; ++r) 9509371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 951564f14d6SBarry Smith /* zero diagonal part of matrix */ 9529566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9534cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9549566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9559566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9569566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 95754bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9589566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9599566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9609566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 962a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 963a92ad425SStefano Zampini PetscBool cong; 964a92ad425SStefano Zampini 9659566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 96628b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9679566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9689566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9699566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9709566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 971377aa5a1SBarry Smith } 9729566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9734cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 975564f14d6SBarry Smith ii = aij->i; 9768e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 977564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 978564f14d6SBarry Smith if (aij->compressedrow.use) { 979564f14d6SBarry Smith m = aij->compressedrow.nrows; 980564f14d6SBarry Smith ii = aij->compressedrow.i; 981564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 982564f14d6SBarry Smith for (i = 0; i < m; i++) { 983564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 984564f14d6SBarry Smith aj = aij->j + ii[i]; 985fff043a9SJunchao Zhang aa = aij_a + ii[i]; 986564f14d6SBarry Smith 987564f14d6SBarry Smith for (j = 0; j < n; j++) { 98825266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 989377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 990564f14d6SBarry Smith *aa = 0.0; 991564f14d6SBarry Smith } 992564f14d6SBarry Smith aa++; 993564f14d6SBarry Smith aj++; 994564f14d6SBarry Smith } 995564f14d6SBarry Smith ridx++; 996564f14d6SBarry Smith } 997564f14d6SBarry Smith } else { /* do not use compressed row format */ 998564f14d6SBarry Smith m = l->B->rmap->n; 999564f14d6SBarry Smith for (i = 0; i < m; i++) { 1000564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1001564f14d6SBarry Smith aj = aij->j + ii[i]; 1002fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1003564f14d6SBarry Smith for (j = 0; j < n; j++) { 100425266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1005377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1006564f14d6SBarry Smith *aa = 0.0; 1007564f14d6SBarry Smith } 1008564f14d6SBarry Smith aa++; 1009564f14d6SBarry Smith aj++; 1010564f14d6SBarry Smith } 1011564f14d6SBarry Smith } 1012564f14d6SBarry Smith } 1013a92ad425SStefano Zampini if (x && b) { 10149566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1016377aa5a1SBarry Smith } 10179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10189566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10199566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10209566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10214f9cfa9eSBarry Smith 10224f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1023f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10244f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 10251c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10264f9cfa9eSBarry Smith } 10273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10289c7c4993SBarry Smith } 10299c7c4993SBarry Smith 1030ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1031d71ae5a4SJacob Faibussowitsch { 1032416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1033b1d57f15SBarry Smith PetscInt nt; 103419b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1035416022c9SBarry Smith 10363a40ed3dSBarry Smith PetscFunctionBegin; 10379566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 103808401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10399566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1040296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10419566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1042296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10441eb62cbbSBarry Smith } 10451eb62cbbSBarry Smith 1046ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1047d71ae5a4SJacob Faibussowitsch { 1048bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1049bd0c2dcbSBarry Smith 1050bd0c2dcbSBarry Smith PetscFunctionBegin; 10519566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1053bd0c2dcbSBarry Smith } 1054bd0c2dcbSBarry Smith 1055ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1056d71ae5a4SJacob Faibussowitsch { 1057416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 105801ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10593a40ed3dSBarry Smith 10603a40ed3dSBarry Smith PetscFunctionBegin; 10619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10629566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10649566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1066da3a660dSBarry Smith } 1067da3a660dSBarry Smith 1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1069d71ae5a4SJacob Faibussowitsch { 1070416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1071da3a660dSBarry Smith 10723a40ed3dSBarry Smith PetscFunctionBegin; 1073da3a660dSBarry Smith /* do nondiagonal part */ 10749566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1075da3a660dSBarry Smith /* do local part */ 10769566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10779613dc34SJunchao Zhang /* add partial results together */ 10789566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10799566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1081da3a660dSBarry Smith } 1082da3a660dSBarry Smith 1083ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1084d71ae5a4SJacob Faibussowitsch { 10854f423910Svictorle MPI_Comm comm; 1086ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1087ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1088cd0d46ebSvictorle IS Me, Notme; 1089b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 109054d735aeSStefano Zampini PetscBool lf; 1091b1d57f15SBarry Smith PetscMPIInt size; 1092cd0d46ebSvictorle 1093cd0d46ebSvictorle PetscFunctionBegin; 109442e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 10959566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 10961c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 10973ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 10989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 10999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11003ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 110142e5f5b4Svictorle 11027dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11039566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11049566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1106cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1107cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11089566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11099566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11109566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 111166501d38Svictorle Aoff = Aoffs[0]; 11129566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 111366501d38Svictorle Boff = Boffs[0]; 11149566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11159566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11169566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11179566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11199566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1121cd0d46ebSvictorle } 1122cd0d46ebSvictorle 1123ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1124d71ae5a4SJacob Faibussowitsch { 1125416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1126da3a660dSBarry Smith 11273a40ed3dSBarry Smith PetscFunctionBegin; 1128da3a660dSBarry Smith /* do nondiagonal part */ 11299566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1130da3a660dSBarry Smith /* do local part */ 11319566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11329613dc34SJunchao Zhang /* add partial results together */ 11339566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11349566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1136da3a660dSBarry Smith } 1137da3a660dSBarry Smith 11381eb62cbbSBarry Smith /* 11391eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11401eb62cbbSBarry Smith diagonal block 11411eb62cbbSBarry Smith */ 1142ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1143d71ae5a4SJacob Faibussowitsch { 1144416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11453a40ed3dSBarry Smith 11463a40ed3dSBarry Smith PetscFunctionBegin; 114708401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1148aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11499566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11511eb62cbbSBarry Smith } 11521eb62cbbSBarry Smith 1153ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1154d71ae5a4SJacob Faibussowitsch { 1155052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11563a40ed3dSBarry Smith 11573a40ed3dSBarry Smith PetscFunctionBegin; 11589566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11599566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1161052efed2SBarry Smith } 1162052efed2SBarry Smith 1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1164d71ae5a4SJacob Faibussowitsch { 11658e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11668e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11678e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11683ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11692e5835c6SStefano Zampini const PetscScalar *aa, *ba; 117017a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 117117a3732bSBarry Smith PetscInt64 nz, hnz; 11723ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11733ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11743ea6fe3dSLisandro Dalcin PetscScalar *matvals; 117517a3732bSBarry Smith PetscMPIInt rank; 11768e2fed03SBarry Smith 11778e2fed03SBarry Smith PetscFunctionBegin; 11789566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11793ea6fe3dSLisandro Dalcin 11803ea6fe3dSLisandro Dalcin M = mat->rmap->N; 11813ea6fe3dSLisandro Dalcin N = mat->cmap->N; 11823ea6fe3dSLisandro Dalcin m = mat->rmap->n; 11833ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 11843ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 11858e2fed03SBarry Smith nz = A->nz + B->nz; 11863ea6fe3dSLisandro Dalcin 11873ea6fe3dSLisandro Dalcin /* write matrix header */ 11880700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 11899371c9d4SSatish Balay header[1] = M; 11909371c9d4SSatish Balay header[2] = N; 119117a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 119217a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 119338b83642SBarry Smith if (rank == 0) { 119438b83642SBarry Smith if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT; 119538b83642SBarry Smith else header[3] = (PetscInt)hnz; 119638b83642SBarry Smith } 11979566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 11988e2fed03SBarry Smith 11993ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12013ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12029566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12039566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12048e2fed03SBarry Smith 12053ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12073ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12083ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12093ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12103ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12118e2fed03SBarry Smith } 12129371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12139371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12148e2fed03SBarry Smith } 121517a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12179566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12188e2fed03SBarry Smith 12193ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12233ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12243ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12253ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12262e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12278e2fed03SBarry Smith } 12289371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12299371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12308e2fed03SBarry Smith } 12319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 123317a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12349566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12359566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12368e2fed03SBarry Smith 12373ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12389566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12408e2fed03SBarry Smith } 12418e2fed03SBarry Smith 12429804daf3SBarry Smith #include <petscdraw.h> 1243ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1244d71ae5a4SJacob Faibussowitsch { 124544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 124632dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1247ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1248b0a32e0cSBarry Smith PetscViewer sviewer; 1249f3ef73ceSBarry Smith PetscViewerFormat format; 1250416022c9SBarry Smith 12513a40ed3dSBarry Smith PetscFunctionBegin; 12529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12539566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 125532077d6dSBarry Smith if (iascii) { 12569566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1257ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 1258f4f49eeaSPierre Jolivet PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1261ef5fdb51SBarry Smith for (i = 0; i < (PetscInt)size; i++) { 1262ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1263ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1264ef5fdb51SBarry Smith navg += nz[i]; 1265ef5fdb51SBarry Smith } 12669566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1267ef5fdb51SBarry Smith navg = navg / size; 12689566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1270ef5fdb51SBarry Smith } 12719566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1272456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12734e220ebcSLois Curfman McInnes MatInfo info; 12746335e310SSatish Balay PetscInt *inodes = NULL; 1275923f20ffSKris Buschelman 12769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12779566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12789566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12799566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1280923f20ffSKris Buschelman if (!inodes) { 12819371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12829371c9d4SSatish Balay (double)info.memory)); 12836831982aSBarry Smith } else { 12849371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12859371c9d4SSatish Balay (double)info.memory)); 12866831982aSBarry Smith } 12879566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 12889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12899566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12919566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 12929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 12939566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 12949566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 12953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1296fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1297923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 12989566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1299923f20ffSKris Buschelman if (inodes) { 13009566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1301d38fa0fbSBarry Smith } else { 13029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1303d38fa0fbSBarry Smith } 13043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13054aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 130708480c60SBarry Smith } 13088e2fed03SBarry Smith } else if (isbinary) { 13098e2fed03SBarry Smith if (size == 1) { 13109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13119566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13128e2fed03SBarry Smith } else { 13139566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13148e2fed03SBarry Smith } 13153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131671e56450SStefano Zampini } else if (iascii && size == 1) { 13179566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13189566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13200f5bd95cSBarry Smith } else if (isdraw) { 1321b0a32e0cSBarry Smith PetscDraw draw; 1322ace3abfcSBarry Smith PetscBool isnull; 13239566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13249566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13253ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 132619bcc07fSBarry Smith } 132719bcc07fSBarry Smith 132871e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 132971e56450SStefano Zampini Mat A = NULL, Av; 133071e56450SStefano Zampini IS isrow, iscol; 13312ee70a88SLois Curfman McInnes 13329566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13339566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13349566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13359566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 133671e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 133771e56450SStefano Zampini /* 133871e56450SStefano Zampini Mat *AA, A = NULL, Av; 133971e56450SStefano Zampini IS isrow,iscol; 134071e56450SStefano Zampini 13419566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13429566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13439566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1344dd400576SPatrick Sanan if (rank == 0) { 13459566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 134671e56450SStefano Zampini A = AA[0]; 134771e56450SStefano Zampini Av = AA[0]; 134895373324SBarry Smith } 13499566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 135071e56450SStefano Zampini */ 13519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 135355843e3eSBarry Smith /* 135455843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1355b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 135655843e3eSBarry Smith */ 13579566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1358dd400576SPatrick Sanan if (rank == 0) { 135948a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13609566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 136195373324SBarry Smith } 13629566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13639566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 136495373324SBarry Smith } 13653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13661eb62cbbSBarry Smith } 13671eb62cbbSBarry Smith 1368d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1369d71ae5a4SJacob Faibussowitsch { 1370ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1371416022c9SBarry Smith 13723a40ed3dSBarry Smith PetscFunctionBegin; 13739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13749566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 137748a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1379416022c9SBarry Smith } 1380416022c9SBarry Smith 1381ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1382d71ae5a4SJacob Faibussowitsch { 138344a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1384f4259b30SLisandro Dalcin Vec bb1 = NULL; 1385ace3abfcSBarry Smith PetscBool hasop; 13868a729477SBarry Smith 13873a40ed3dSBarry Smith PetscFunctionBegin; 1388a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 13899566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 13903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1391a2b30743SBarry Smith } 1392a2b30743SBarry Smith 139348a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 13944e980039SJed Brown 1395c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1396da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 13979566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 13982798e883SHong Zhang its--; 1399da3a660dSBarry Smith } 14002798e883SHong Zhang 14012798e883SHong Zhang while (its--) { 14029566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14039566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14042798e883SHong Zhang 1405c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14069566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14079566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14082798e883SHong Zhang 1409c14dc6b6SHong Zhang /* local sweep */ 14109566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14112798e883SHong Zhang } 14123a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1413da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14149566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14152798e883SHong Zhang its--; 1416da3a660dSBarry Smith } 14172798e883SHong Zhang while (its--) { 14189566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14199566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14202798e883SHong Zhang 1421c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14229566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14239566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1424c14dc6b6SHong Zhang 1425c14dc6b6SHong Zhang /* local sweep */ 14269566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14272798e883SHong Zhang } 14283a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1429da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14309566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14312798e883SHong Zhang its--; 1432da3a660dSBarry Smith } 14332798e883SHong Zhang while (its--) { 14349566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14359566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14362798e883SHong Zhang 1437c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14389566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14399566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14402798e883SHong Zhang 1441c14dc6b6SHong Zhang /* local sweep */ 14429566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14432798e883SHong Zhang } 1444a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1445a7420bb7SBarry Smith Vec xx1; 1446a7420bb7SBarry Smith 14479566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14489566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1449a7420bb7SBarry Smith 14509566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14519566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1452a7420bb7SBarry Smith if (!mat->diag) { 14539566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14549566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1455a7420bb7SBarry Smith } 14569566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1457bd0c2dcbSBarry Smith if (hasop) { 14589566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1459bd0c2dcbSBarry Smith } else { 14609566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1461bd0c2dcbSBarry Smith } 14629566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1463887ee2caSBarry Smith 14649566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1465a7420bb7SBarry Smith 1466a7420bb7SBarry Smith /* local sweep */ 14679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14689566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1470ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1471c14dc6b6SHong Zhang 14729566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1473a0808db4SHong Zhang 14747b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14768a729477SBarry Smith } 1477a66be287SLois Curfman McInnes 1478ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1479d71ae5a4SJacob Faibussowitsch { 148072e6a0cfSJed Brown Mat aA, aB, Aperm; 148172e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 148272e6a0cfSJed Brown PetscScalar *aa, *ba; 148372e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 148472e6a0cfSJed Brown PetscSF rowsf, sf; 14850298fd71SBarry Smith IS parcolp = NULL; 148672e6a0cfSJed Brown PetscBool done; 148742e855d1Svictor 148842e855d1Svictor PetscFunctionBegin; 14899566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 14909566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 14919566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 14929566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 149372e6a0cfSJed Brown 149472e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 14959566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 14969566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 14979566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 149872e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 14999566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15009566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 150172e6a0cfSJed Brown 150272e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15039566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15049566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15059566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 150672e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15079566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15089566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15099566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 151072e6a0cfSJed Brown 15119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15129566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15139566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 151472e6a0cfSJed Brown 151572e6a0cfSJed Brown /* Find out where my gcols should go */ 15169566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15189566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15199566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15209566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152472e6a0cfSJed Brown 15259566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15269566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15279566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 152872e6a0cfSJed Brown for (i = 0; i < m; i++) { 1529131c27b5Sprj- PetscInt row = rdest[i]; 1530131c27b5Sprj- PetscMPIInt rowner; 15319566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 153272e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1533131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1534131c27b5Sprj- PetscMPIInt cowner; 15359566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 153672e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 153772e6a0cfSJed Brown else onnz[i]++; 153872e6a0cfSJed Brown } 153972e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1540131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1541131c27b5Sprj- PetscMPIInt cowner; 15429566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 154372e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 154472e6a0cfSJed Brown else onnz[i]++; 154572e6a0cfSJed Brown } 154672e6a0cfSJed Brown } 15479566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15489566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15509566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15519566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 155272e6a0cfSJed Brown 15539566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 155672e6a0cfSJed Brown for (i = 0; i < m; i++) { 155772e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1558970468b0SJed Brown PetscInt j0, rowlen; 155972e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1560970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1561970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15629566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1563970468b0SJed Brown } 156472e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1565970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1566970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15679566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1568970468b0SJed Brown } 156972e6a0cfSJed Brown } 15709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15729566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15739566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15769566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15779566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15789566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15799566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 158072e6a0cfSJed Brown *B = Aperm; 15813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 158242e855d1Svictor } 158342e855d1Svictor 1584ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1585d71ae5a4SJacob Faibussowitsch { 1586c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1587c5e4d11fSDmitry Karpeev 1588c5e4d11fSDmitry Karpeev PetscFunctionBegin; 15899566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1590c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 15913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1592c5e4d11fSDmitry Karpeev } 1593c5e4d11fSDmitry Karpeev 1594ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1595d71ae5a4SJacob Faibussowitsch { 1596a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1597a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 15983966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1599a66be287SLois Curfman McInnes 16003a40ed3dSBarry Smith PetscFunctionBegin; 16014e220ebcSLois Curfman McInnes info->block_size = 1.0; 16029566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16032205254eSKarl Rupp 16049371c9d4SSatish Balay isend[0] = info->nz_used; 16059371c9d4SSatish Balay isend[1] = info->nz_allocated; 16069371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16079371c9d4SSatish Balay isend[3] = info->memory; 16089371c9d4SSatish Balay isend[4] = info->mallocs; 16092205254eSKarl Rupp 16109566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16112205254eSKarl Rupp 16129371c9d4SSatish Balay isend[0] += info->nz_used; 16139371c9d4SSatish Balay isend[1] += info->nz_allocated; 16149371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16159371c9d4SSatish Balay isend[3] += info->memory; 16169371c9d4SSatish Balay isend[4] += info->mallocs; 1617a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16184e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16194e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16204e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16214e220ebcSLois Curfman McInnes info->memory = isend[3]; 16224e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1623a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 16241c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16252205254eSKarl Rupp 16264e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16274e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16284e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16294e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16304e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1631a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 16321c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16332205254eSKarl Rupp 16344e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16354e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16364e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16374e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16384e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1639a66be287SLois Curfman McInnes } 16404e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16414e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16424e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1644a66be287SLois Curfman McInnes } 1645a66be287SLois Curfman McInnes 1646d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1647d71ae5a4SJacob Faibussowitsch { 1648c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1649c74985f6SBarry Smith 16503a40ed3dSBarry Smith PetscFunctionBegin; 165112c028f9SKris Buschelman switch (op) { 1652512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 165312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 165428b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1655a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 165612c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16570ad02fcaSStefano Zampini case MAT_USE_INODES: 165812c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16591a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1660fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16619566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16629566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 166312c028f9SKris Buschelman break; 166412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 166543674050SBarry Smith MatCheckPreallocated(A, 1); 16664e0d8c25SBarry Smith a->roworiented = flg; 16672205254eSKarl Rupp 16689566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16699566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 167012c028f9SKris Buschelman break; 16718c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1672d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1673d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1674d71ae5a4SJacob Faibussowitsch break; 1675d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1676d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1677d71ae5a4SJacob Faibussowitsch break; 1678c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1679ffa07934SHong Zhang case MAT_SPD: 168077e54ba9SKris Buschelman case MAT_SYMMETRIC: 168177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1682bf108f30SBarry Smith case MAT_HERMITIAN: 1683bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1684b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1685b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1686b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 168777e54ba9SKris Buschelman break; 1688d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1689d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1690d71ae5a4SJacob Faibussowitsch break; 1691957cac9fSHong Zhang case MAT_STRUCTURE_ONLY: 1692957cac9fSHong Zhang /* The option is handled directly by MatSetOption() */ 1693957cac9fSHong Zhang break; 1694d71ae5a4SJacob Faibussowitsch default: 1695d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 16963a40ed3dSBarry Smith } 16973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1698c74985f6SBarry Smith } 1699c74985f6SBarry Smith 1700d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1701d71ae5a4SJacob Faibussowitsch { 1702154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 170387828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1704d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1705d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1706b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 170739e00950SLois Curfman McInnes 17083a40ed3dSBarry Smith PetscFunctionBegin; 170928b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17107a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17117a0afa10SBarry Smith 171270f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17137a0afa10SBarry Smith /* 17147a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17157a0afa10SBarry Smith */ 17167a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1717b1d57f15SBarry Smith PetscInt max = 1, tmp; 1718d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17197a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17202205254eSKarl Rupp if (max < tmp) max = tmp; 17217a0afa10SBarry Smith } 17229566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17237a0afa10SBarry Smith } 17247a0afa10SBarry Smith 1725aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1726abc0e9e4SLois Curfman McInnes lrow = row - rstart; 172739e00950SLois Curfman McInnes 17289371c9d4SSatish Balay pvA = &vworkA; 17299371c9d4SSatish Balay pcA = &cworkA; 17309371c9d4SSatish Balay pvB = &vworkB; 17319371c9d4SSatish Balay pcB = &cworkB; 17329371c9d4SSatish Balay if (!v) { 17339371c9d4SSatish Balay pvA = NULL; 17349371c9d4SSatish Balay pvB = NULL; 17359371c9d4SSatish Balay } 17369371c9d4SSatish Balay if (!idx) { 17379371c9d4SSatish Balay pcA = NULL; 17389371c9d4SSatish Balay if (!v) pcB = NULL; 17399371c9d4SSatish Balay } 17409566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17419566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1742154123eaSLois Curfman McInnes nztot = nzA + nzB; 1743154123eaSLois Curfman McInnes 174470f0671dSBarry Smith cmap = mat->garray; 1745154123eaSLois Curfman McInnes if (v || idx) { 1746154123eaSLois Curfman McInnes if (nztot) { 1747154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1748b1d57f15SBarry Smith PetscInt imark = -1; 1749154123eaSLois Curfman McInnes if (v) { 175070f0671dSBarry Smith *v = v_p = mat->rowvalues; 175139e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 175270f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1753154123eaSLois Curfman McInnes else break; 1754154123eaSLois Curfman McInnes } 1755154123eaSLois Curfman McInnes imark = i; 175670f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 175770f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1758154123eaSLois Curfman McInnes } 1759154123eaSLois Curfman McInnes if (idx) { 176070f0671dSBarry Smith *idx = idx_p = mat->rowindices; 176170f0671dSBarry Smith if (imark > -1) { 1762ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 176370f0671dSBarry Smith } else { 1764154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 176570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1766154123eaSLois Curfman McInnes else break; 1767154123eaSLois Curfman McInnes } 1768154123eaSLois Curfman McInnes imark = i; 176970f0671dSBarry Smith } 177070f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 177170f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 177239e00950SLois Curfman McInnes } 17733f97c4b0SBarry Smith } else { 1774f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1775f4259b30SLisandro Dalcin if (v) *v = NULL; 17761ca473b0SSatish Balay } 1777154123eaSLois Curfman McInnes } 177839e00950SLois Curfman McInnes *nz = nztot; 17799566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17809566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 178239e00950SLois Curfman McInnes } 178339e00950SLois Curfman McInnes 1784d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1785d71ae5a4SJacob Faibussowitsch { 17867a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 17873a40ed3dSBarry Smith 17883a40ed3dSBarry Smith PetscFunctionBegin; 178928b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 17907a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 17913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179239e00950SLois Curfman McInnes } 179339e00950SLois Curfman McInnes 1794ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1795d71ae5a4SJacob Faibussowitsch { 1796855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1797ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1798d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1799329f5518SBarry Smith PetscReal sum = 0.0; 1800fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 180104ca555eSLois Curfman McInnes 18023a40ed3dSBarry Smith PetscFunctionBegin; 180317699dbbSLois Curfman McInnes if (aij->size == 1) { 18049566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 180537fa93a5SLois Curfman McInnes } else { 18069566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18079566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 180804ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1809fff043a9SJunchao Zhang v = amata; 181004ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18119371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18129371c9d4SSatish Balay v++; 181304ca555eSLois Curfman McInnes } 1814fff043a9SJunchao Zhang v = bmata; 181504ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18169371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18179371c9d4SSatish Balay v++; 181804ca555eSLois Curfman McInnes } 18191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18208f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18219566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18223a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1823329f5518SBarry Smith PetscReal *tmp, *tmp2; 1824b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18259566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 18269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2)); 182704ca555eSLois Curfman McInnes *norm = 0.0; 18289371c9d4SSatish Balay v = amata; 18299371c9d4SSatish Balay jj = amat->j; 183004ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18319371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18329371c9d4SSatish Balay v++; 183304ca555eSLois Curfman McInnes } 18349371c9d4SSatish Balay v = bmata; 18359371c9d4SSatish Balay jj = bmat->j; 183604ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18379371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18389371c9d4SSatish Balay v++; 183904ca555eSLois Curfman McInnes } 18401c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1841d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 184204ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 184304ca555eSLois Curfman McInnes } 18449566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18459566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 18469566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18473a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1848329f5518SBarry Smith PetscReal ntemp = 0.0; 1849d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18508e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 185104ca555eSLois Curfman McInnes sum = 0.0; 185204ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18539371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18549371c9d4SSatish Balay v++; 185504ca555eSLois Curfman McInnes } 18568e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 185704ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18589371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18599371c9d4SSatish Balay v++; 186004ca555eSLois Curfman McInnes } 1861515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 186204ca555eSLois Curfman McInnes } 18631c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18649566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1865ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 186837fa93a5SLois Curfman McInnes } 18693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1870855ac2c5SLois Curfman McInnes } 1871855ac2c5SLois Curfman McInnes 1872ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1873d71ae5a4SJacob Faibussowitsch { 1874a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1875a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1876071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1877071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1878a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1879ce496241SStefano Zampini const MatScalar *pbv, *bv; 1880b7c46309SBarry Smith 18813a40ed3dSBarry Smith PetscFunctionBegin; 18827fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18839371c9d4SSatish Balay ma = A->rmap->n; 18849371c9d4SSatish Balay na = A->cmap->n; 18859371c9d4SSatish Balay mb = a->B->rmap->n; 18869371c9d4SSatish Balay nb = a->B->cmap->n; 18879371c9d4SSatish Balay ai = Aloc->i; 18889371c9d4SSatish Balay aj = Aloc->j; 18899371c9d4SSatish Balay bi = Bloc->i; 18909371c9d4SSatish Balay bj = Bloc->j; 1891fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 189280bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 189380bcc5a1SJed Brown PetscSFNode *oloc; 1894713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 189580bcc5a1SJed Brown 18969566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 189780bcc5a1SJed Brown /* compute d_nnz for preallocation */ 18989566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1899cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 190080bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19019566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 190280bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 190380bcc5a1SJed Brown /* map those to global */ 19049566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19059566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19069566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19079566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 190857168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 190957168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19109566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1911d4bb536fSBarry Smith 19129566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 19149566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 19159566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19169566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19179566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1918fc4dec0aSBarry Smith } else { 1919fc4dec0aSBarry Smith B = *matout; 19209566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1921fc4dec0aSBarry Smith } 1922b7c46309SBarry Smith 1923f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1924a8661f62Sandi selinger A_diag = a->A; 1925a8661f62Sandi selinger B_diag = &b->A; 1926a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1927a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1928a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1929a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1930f79cb1a0Sandi selinger 1931f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1932ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1933f79cb1a0Sandi selinger 19344cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1935a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19367fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19379566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1938f79cb1a0Sandi selinger 1939b7c46309SBarry Smith /* copy over the B part */ 19409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1942ce496241SStefano Zampini pbv = bv; 1943d0f46423SBarry Smith row = A->rmap->rstart; 19442205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 194561a2fbbaSHong Zhang cols_tmp = cols; 1946da668accSHong Zhang for (i = 0; i < mb; i++) { 1947da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19489566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19492205254eSKarl Rupp row++; 1950720a2405SPierre Jolivet if (pbv) pbv += ncol; 1951720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1952b7c46309SBarry Smith } 19539566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1955fc73b1b3SBarry Smith 19569566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19579566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1958cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19590de55854SLois Curfman McInnes *matout = B; 19600de55854SLois Curfman McInnes } else { 19619566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19620de55854SLois Curfman McInnes } 19633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1964b7c46309SBarry Smith } 1965b7c46309SBarry Smith 1966ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1967d71ae5a4SJacob Faibussowitsch { 19684b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19694b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1970b1d57f15SBarry Smith PetscInt s1, s2, s3; 1971a008b906SSatish Balay 19723a40ed3dSBarry Smith PetscFunctionBegin; 19739566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19744b967eb1SSatish Balay if (rr) { 19759566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 197608401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19774b967eb1SSatish Balay /* Overlap communication with computation. */ 19789566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1979a008b906SSatish Balay } 19804b967eb1SSatish Balay if (ll) { 19819566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 198208401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1983dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19844b967eb1SSatish Balay } 19854b967eb1SSatish Balay /* scale the diagonal block */ 1986dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19874b967eb1SSatish Balay 19884b967eb1SSatish Balay if (rr) { 19894b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 19909566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1991dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 19924b967eb1SSatish Balay } 19933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1994a008b906SSatish Balay } 1995a008b906SSatish Balay 1996ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 1997d71ae5a4SJacob Faibussowitsch { 1998bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 19993a40ed3dSBarry Smith 20003a40ed3dSBarry Smith PetscFunctionBegin; 20019566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2003bb5a7306SBarry Smith } 2004bb5a7306SBarry Smith 2005ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2006d71ae5a4SJacob Faibussowitsch { 2007d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2008d4bb536fSBarry Smith Mat a, b, c, d; 2009ace3abfcSBarry Smith PetscBool flg; 2010d4bb536fSBarry Smith 20113a40ed3dSBarry Smith PetscFunctionBegin; 20129371c9d4SSatish Balay a = matA->A; 20139371c9d4SSatish Balay b = matA->B; 20149371c9d4SSatish Balay c = matB->A; 20159371c9d4SSatish Balay d = matB->B; 2016d4bb536fSBarry Smith 20179566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 201848a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 20191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2021d4bb536fSBarry Smith } 2022d4bb536fSBarry Smith 2023ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2024d71ae5a4SJacob Faibussowitsch { 2025cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2026cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2027cb5b572fSBarry Smith 2028cb5b572fSBarry Smith PetscFunctionBegin; 202933f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 203033f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2031cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2032cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2033cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2034cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2035cb5b572fSBarry Smith then copying the submatrices */ 20369566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2037cb5b572fSBarry Smith } else { 20389566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20399566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2040cb5b572fSBarry Smith } 20419566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2043cb5b572fSBarry Smith } 2044cb5b572fSBarry Smith 2045001ddc4fSHong Zhang /* 2046001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2047001ddc4fSHong Zhang have different nonzero structure. 2048001ddc4fSHong Zhang */ 2049d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2050d71ae5a4SJacob Faibussowitsch { 2051001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 205295b7e79eSJed Brown 205395b7e79eSJed Brown PetscFunctionBegin; 205495b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 205595b7e79eSJed Brown for (i = 0; i < m; i++) { 20568e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2057001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2058001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 205995b7e79eSJed Brown nnz[i] = 0; 206095b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2061001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2062001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 206395b7e79eSJed Brown nnz[i]++; 206495b7e79eSJed Brown } 206595b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 206695b7e79eSJed Brown } 20673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 206895b7e79eSJed Brown } 206995b7e79eSJed Brown 2070001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2071d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2072d71ae5a4SJacob Faibussowitsch { 2073001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2074001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2075001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2076001ddc4fSHong Zhang 2077001ddc4fSHong Zhang PetscFunctionBegin; 20789566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2080001ddc4fSHong Zhang } 2081001ddc4fSHong Zhang 2082ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2083d71ae5a4SJacob Faibussowitsch { 2084ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2085ac90fabeSBarry Smith 2086ac90fabeSBarry Smith PetscFunctionBegin; 2087ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20889566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 20899566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2090ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 20919566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2092ac90fabeSBarry Smith } else { 20939f5f6813SShri Abhyankar Mat B; 20949f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2095d9d719b4SStefano Zampini 20969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 20979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 20989566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 20999566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21009566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21019566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21029566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21039566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21049566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21059566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21069566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21079566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21089566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2109ac90fabeSBarry Smith } 21103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2111ac90fabeSBarry Smith } 2112ac90fabeSBarry Smith 21132726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2114354c94deSBarry Smith 2115ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2116d71ae5a4SJacob Faibussowitsch { 21175f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21185f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2119354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2120354c94deSBarry Smith 21219566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21229566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21235f80ce2aSJacob Faibussowitsch } 21243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2125354c94deSBarry Smith } 2126354c94deSBarry Smith 2127ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2128d71ae5a4SJacob Faibussowitsch { 212999cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 213099cafbc1SBarry Smith 213199cafbc1SBarry Smith PetscFunctionBegin; 21329566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21339566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 213599cafbc1SBarry Smith } 213699cafbc1SBarry Smith 2137ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2138d71ae5a4SJacob Faibussowitsch { 213999cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214099cafbc1SBarry Smith 214199cafbc1SBarry Smith PetscFunctionBegin; 21429566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21439566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214599cafbc1SBarry Smith } 214699cafbc1SBarry Smith 2147ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2148d71ae5a4SJacob Faibussowitsch { 2149c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2150475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 2151475b8b61SHong Zhang PetscScalar *va, *vv; 2152475b8b61SHong Zhang Vec vB, vA; 2153475b8b61SHong Zhang const PetscScalar *vb; 2154c91732d9SHong Zhang 2155c91732d9SHong Zhang PetscFunctionBegin; 2156c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21579566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2158475b8b61SHong Zhang 21599566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 2160c91732d9SHong Zhang if (idx) { 2161475b8b61SHong Zhang for (i = 0; i < m; i++) { 2162d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2163c91732d9SHong Zhang } 2164c91732d9SHong Zhang } 2165c91732d9SHong Zhang 2166c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21689566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2169c91732d9SHong Zhang 21709566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21719566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2172475b8b61SHong Zhang for (i = 0; i < m; i++) { 2173c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2174475b8b61SHong Zhang vv[i] = vb[i]; 2175c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2176475b8b61SHong Zhang } else { 2177475b8b61SHong Zhang vv[i] = va[i]; 21789371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2179c91732d9SHong Zhang } 2180c91732d9SHong Zhang } 21819566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 21829566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 21839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21849566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2188c91732d9SHong Zhang } 2189c91732d9SHong Zhang 2190eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2191eede4a3fSMark Adams { 2192eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2193eede4a3fSMark Adams Vec vB, vA; 2194eede4a3fSMark Adams 2195eede4a3fSMark Adams PetscFunctionBegin; 2196c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2197eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2198c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2199eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2200eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2201eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2202eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2203eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2204eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2205eede4a3fSMark Adams } 2206eede4a3fSMark Adams 2207ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2208d71ae5a4SJacob Faibussowitsch { 2209f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2210f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2211f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2212f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2213f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2214f07e67edSHong Zhang Vec diagV, offdiagV; 2215ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2216ce496241SStefano Zampini const PetscScalar *ba, *bav; 2217f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2218f07e67edSHong Zhang Mat B = mat->B; 2219f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2220c87e5d42SMatthew Knepley 2221c87e5d42SMatthew Knepley PetscFunctionBegin; 2222f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2223f07e67edSHong Zhang if (A->cmap->N == n) { 22249566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22259566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22269566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22279566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2230f07e67edSHong Zhang } else if (n == 0) { 2231f07e67edSHong Zhang if (m) { 22329566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22339371c9d4SSatish Balay for (r = 0; r < m; r++) { 22349371c9d4SSatish Balay a[r] = 0.0; 22359371c9d4SSatish Balay if (idx) idx[r] = -1; 22369371c9d4SSatish Balay } 22379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2238f07e67edSHong Zhang } 22393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2240f07e67edSHong Zhang } 2241f07e67edSHong Zhang 22429566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22439566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22449566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22459566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2246f07e67edSHong Zhang 2247f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22489566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2249ce496241SStefano Zampini ba = bav; 2250f07e67edSHong Zhang bi = b->i; 2251f07e67edSHong Zhang bj = b->j; 22529566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2253f07e67edSHong Zhang for (r = 0; r < m; r++) { 2254f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2255f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22569371c9d4SSatish Balay offdiagA[r] = *ba; 22579371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2258f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2259f07e67edSHong Zhang offdiagA[r] = 0.0; 2260f07e67edSHong Zhang 2261f07e67edSHong Zhang /* Find first hole in the cmap */ 2262f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2263f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2264f07e67edSHong Zhang if (col > j && j < cstart) { 2265f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2266f07e67edSHong Zhang break; 2267f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2268f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2269f07e67edSHong Zhang break; 2270f07e67edSHong Zhang } 2271f07e67edSHong Zhang } 22724e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2273f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2274f07e67edSHong Zhang if (ncols == 0) { 2275f07e67edSHong Zhang if (cstart) { 2276f07e67edSHong Zhang offdiagIdx[r] = 0; 2277f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2278f07e67edSHong Zhang } else { /* ncols > 0 */ 2279f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2280f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2281f07e67edSHong Zhang } 2282f07e67edSHong Zhang } 2283f07e67edSHong Zhang } 2284f07e67edSHong Zhang 2285f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22869371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22879371c9d4SSatish Balay offdiagA[r] = *ba; 22889371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 22899371c9d4SSatish Balay } 22909371c9d4SSatish Balay ba++; 22919371c9d4SSatish Balay bj++; 2292f07e67edSHong Zhang } 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang 22959566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22969566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2297f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2298f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2299f07e67edSHong Zhang a[r] = diagA[r]; 2300f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2301f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2302f07e67edSHong Zhang a[r] = diagA[r]; 2303c87e5d42SMatthew Knepley if (idx) { 2304f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2305f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2306f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2307f07e67edSHong Zhang } 2308f07e67edSHong Zhang } else { 2309f07e67edSHong Zhang a[r] = offdiagA[r]; 2310f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2311c87e5d42SMatthew Knepley } 2312c87e5d42SMatthew Knepley } 23139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23169566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23179566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23189566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23199566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2321c87e5d42SMatthew Knepley } 2322c87e5d42SMatthew Knepley 2323ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2324d71ae5a4SJacob Faibussowitsch { 232503bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2326fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2327fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 232803bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 232903bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 233003bc72f1SMatthew Knepley Vec diagV, offdiagV; 2331ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2332ce496241SStefano Zampini const PetscScalar *ba, *bav; 2333fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2334fa213d2fSHong Zhang Mat B = mat->B; 2335fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 233603bc72f1SMatthew Knepley 233703bc72f1SMatthew Knepley PetscFunctionBegin; 2338fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2339fa213d2fSHong Zhang if (A->cmap->N == n) { 23409566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23419566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23429566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23439566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23449566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2346fa213d2fSHong Zhang } else if (n == 0) { 2347fa213d2fSHong Zhang if (m) { 23489566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23499371c9d4SSatish Balay for (r = 0; r < m; r++) { 23509371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23519371c9d4SSatish Balay if (idx) idx[r] = -1; 23529371c9d4SSatish Balay } 23539566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2354fa213d2fSHong Zhang } 23553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2356fa213d2fSHong Zhang } 2357fa213d2fSHong Zhang 23589566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23599566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23609566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23619566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2362fa213d2fSHong Zhang 2363fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2365ce496241SStefano Zampini ba = bav; 2366fa213d2fSHong Zhang bi = b->i; 2367fa213d2fSHong Zhang bj = b->j; 23689566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2369fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2370fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2371fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23729371c9d4SSatish Balay offdiagA[r] = *ba; 23739371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2374fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2375fa213d2fSHong Zhang offdiagA[r] = 0.0; 2376fa213d2fSHong Zhang 2377fa213d2fSHong Zhang /* Find first hole in the cmap */ 2378fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2379fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2380fa213d2fSHong Zhang if (col > j && j < cstart) { 2381fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2382fa213d2fSHong Zhang break; 2383fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2384fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2385fa213d2fSHong Zhang break; 2386fa213d2fSHong Zhang } 2387fa213d2fSHong Zhang } 23884e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2389fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2390fa213d2fSHong Zhang if (ncols == 0) { 2391fa213d2fSHong Zhang if (cstart) { 2392fa213d2fSHong Zhang offdiagIdx[r] = 0; 2393fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2394fa213d2fSHong Zhang } else { /* ncols > 0 */ 2395fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2396fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2397fa213d2fSHong Zhang } 2398fa213d2fSHong Zhang } 2399fa213d2fSHong Zhang } 2400fa213d2fSHong Zhang 2401fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24029371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24039371c9d4SSatish Balay offdiagA[r] = *ba; 24049371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24059371c9d4SSatish Balay } 24069371c9d4SSatish Balay ba++; 24079371c9d4SSatish Balay bj++; 2408fa213d2fSHong Zhang } 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang 24119566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24129566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2413fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2414fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 241503bc72f1SMatthew Knepley a[r] = diagA[r]; 2416fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2417fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2418fa213d2fSHong Zhang a[r] = diagA[r]; 2419fa213d2fSHong Zhang if (idx) { 2420fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 242103bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2422fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2423fa213d2fSHong Zhang } 242403bc72f1SMatthew Knepley } else { 242503bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2426fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 242703bc72f1SMatthew Knepley } 242803bc72f1SMatthew Knepley } 24299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24309566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24319566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24329566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24339566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24349566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24359566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243703bc72f1SMatthew Knepley } 243803bc72f1SMatthew Knepley 2439ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2440d71ae5a4SJacob Faibussowitsch { 2441c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24421a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24431a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2444c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2445c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2446c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2447ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2448ce496241SStefano Zampini const PetscScalar *ba, *bav; 24491a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24501a254869SHong Zhang Mat B = mat->B; 24511a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2452c87e5d42SMatthew Knepley 2453c87e5d42SMatthew Knepley PetscFunctionBegin; 24541a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24551a254869SHong Zhang if (A->cmap->N == n) { 24569566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24579566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24589566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24621a254869SHong Zhang } else if (n == 0) { 24631a254869SHong Zhang if (m) { 24649566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24659371c9d4SSatish Balay for (r = 0; r < m; r++) { 24669371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24679371c9d4SSatish Balay if (idx) idx[r] = -1; 24689371c9d4SSatish Balay } 24699566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24701a254869SHong Zhang } 24713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24721a254869SHong Zhang } 24731a254869SHong Zhang 24749566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24759566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24769566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24779566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24781a254869SHong Zhang 24791a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2481ce496241SStefano Zampini ba = bav; 24821a254869SHong Zhang bi = b->i; 24831a254869SHong Zhang bj = b->j; 24849566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24851a254869SHong Zhang for (r = 0; r < m; r++) { 24861a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24871a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24889371c9d4SSatish Balay offdiagA[r] = *ba; 24899371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 24901a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 24911a254869SHong Zhang offdiagA[r] = 0.0; 24921a254869SHong Zhang 24931a254869SHong Zhang /* Find first hole in the cmap */ 24941a254869SHong Zhang for (j = 0; j < ncols; j++) { 24951a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 24961a254869SHong Zhang if (col > j && j < cstart) { 24971a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 24981a254869SHong Zhang break; 24991a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25001a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25011a254869SHong Zhang break; 25021a254869SHong Zhang } 25031a254869SHong Zhang } 25044e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25051a254869SHong Zhang /* a hole is outside compressed Bcols */ 25061a254869SHong Zhang if (ncols == 0) { 25071a254869SHong Zhang if (cstart) { 25081a254869SHong Zhang offdiagIdx[r] = 0; 25091a254869SHong Zhang } else offdiagIdx[r] = cend; 25101a254869SHong Zhang } else { /* ncols > 0 */ 25111a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25121a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25131a254869SHong Zhang } 25141a254869SHong Zhang } 25151a254869SHong Zhang } 25161a254869SHong Zhang 25171a254869SHong Zhang for (j = 0; j < ncols; j++) { 25189371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25199371c9d4SSatish Balay offdiagA[r] = *ba; 25209371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25219371c9d4SSatish Balay } 25229371c9d4SSatish Balay ba++; 25239371c9d4SSatish Balay bj++; 25241a254869SHong Zhang } 25251a254869SHong Zhang } 25261a254869SHong Zhang 25279566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25289566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25291a254869SHong Zhang for (r = 0; r < m; ++r) { 25301a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2531c87e5d42SMatthew Knepley a[r] = diagA[r]; 25321a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25331a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25341a254869SHong Zhang a[r] = diagA[r]; 25351a254869SHong Zhang if (idx) { 25361a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2537c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25381a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25391a254869SHong Zhang } 2540c87e5d42SMatthew Knepley } else { 2541c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25421a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2543c87e5d42SMatthew Knepley } 2544c87e5d42SMatthew Knepley } 25459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25499566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25519566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2553c87e5d42SMatthew Knepley } 2554c87e5d42SMatthew Knepley 2555d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2556d71ae5a4SJacob Faibussowitsch { 2557f6d58c54SBarry Smith Mat *dummy; 25585494a064SHong Zhang 25595494a064SHong Zhang PetscFunctionBegin; 25609566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2561f6d58c54SBarry Smith *newmat = *dummy; 25629566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25645494a064SHong Zhang } 25655494a064SHong Zhang 2566ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2567d71ae5a4SJacob Faibussowitsch { 2568bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2569bbead8a2SBarry Smith 2570bbead8a2SBarry Smith PetscFunctionBegin; 25719566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25727b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2574bbead8a2SBarry Smith } 2575bbead8a2SBarry Smith 2576d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2577d71ae5a4SJacob Faibussowitsch { 257873a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 257973a71a0fSBarry Smith 258073a71a0fSBarry Smith PetscFunctionBegin; 258108401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25829566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2583679944adSJunchao Zhang if (x->assembled) { 25849566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2585679944adSJunchao Zhang } else { 25869566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2587679944adSJunchao Zhang } 25889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 25899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 25903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 259173a71a0fSBarry Smith } 2592bbead8a2SBarry Smith 2593ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2594d71ae5a4SJacob Faibussowitsch { 2595b1b1104fSBarry Smith PetscFunctionBegin; 2596b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2597b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 25983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2599b1b1104fSBarry Smith } 2600b1b1104fSBarry Smith 2601b1b1104fSBarry Smith /*@ 2602f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2603f2afee66SBarry Smith 26042ef1f0ffSBarry Smith Not Collective 2605f2afee66SBarry Smith 2606f2afee66SBarry Smith Input Parameter: 2607f2afee66SBarry Smith . A - the matrix 2608f2afee66SBarry Smith 2609f2afee66SBarry Smith Output Parameter: 2610f2afee66SBarry Smith . nz - the number of nonzeros 2611f2afee66SBarry Smith 2612f2afee66SBarry Smith Level: advanced 2613f2afee66SBarry Smith 2614fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2615f2afee66SBarry Smith @*/ 2616d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2617d71ae5a4SJacob Faibussowitsch { 2618f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2619f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2620dfebb78cSStefano Zampini PetscBool isaij; 2621f2afee66SBarry Smith 2622f2afee66SBarry Smith PetscFunctionBegin; 2623dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2624dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2625f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2627f2afee66SBarry Smith } 2628f2afee66SBarry Smith 2629f2afee66SBarry Smith /*@ 2630b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2631b1b1104fSBarry Smith 2632c3339decSBarry Smith Collective 2633b1b1104fSBarry Smith 2634b1b1104fSBarry Smith Input Parameters: 2635b1b1104fSBarry Smith + A - the matrix 263611a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2637b1b1104fSBarry Smith 263896a0c994SBarry Smith Level: advanced 263996a0c994SBarry Smith 2640fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2641b1b1104fSBarry Smith @*/ 2642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2643d71ae5a4SJacob Faibussowitsch { 2644b1b1104fSBarry Smith PetscFunctionBegin; 2645cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2647b1b1104fSBarry Smith } 2648b1b1104fSBarry Smith 2649d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject) 2650d71ae5a4SJacob Faibussowitsch { 2651b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2652b1b1104fSBarry Smith 2653b1b1104fSBarry Smith PetscFunctionBegin; 2654d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2655b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26569566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26571baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2658d0609cedSBarry Smith PetscOptionsHeadEnd(); 26593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2660b1b1104fSBarry Smith } 2661b1b1104fSBarry Smith 2662ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2663d71ae5a4SJacob Faibussowitsch { 26647d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2665c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26667d68702bSBarry Smith 26677d68702bSBarry Smith PetscFunctionBegin; 2668c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26699566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26705519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2671b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2673b83222d8SBarry Smith aij->nonew = nonew; 26747d68702bSBarry Smith } 26759566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26777d68702bSBarry Smith } 26787d68702bSBarry Smith 2679ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2680d71ae5a4SJacob Faibussowitsch { 26813b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26823b49f96aSBarry Smith 26833b49f96aSBarry Smith PetscFunctionBegin; 268408401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26859566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26863b49f96aSBarry Smith if (d) { 26873b49f96aSBarry Smith PetscInt rstart; 26889566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 26893b49f96aSBarry Smith *d += rstart; 26903b49f96aSBarry Smith } 26913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26923b49f96aSBarry Smith } 26933b49f96aSBarry Smith 2694ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2695d71ae5a4SJacob Faibussowitsch { 2696a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2697a8ee9fb5SBarry Smith 2698a8ee9fb5SBarry Smith PetscFunctionBegin; 26999566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2701a8ee9fb5SBarry Smith } 27023b49f96aSBarry Smith 270358c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2704dec0b466SHong Zhang { 2705dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2706dec0b466SHong Zhang 2707dec0b466SHong Zhang PetscFunctionBegin; 270858c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 270958c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2711dec0b466SHong Zhang } 2712dec0b466SHong Zhang 2713cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2714cda55fadSBarry Smith MatGetRow_MPIAIJ, 2715cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2716cda55fadSBarry Smith MatMult_MPIAIJ, 271797304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27187c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27197c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2720f4259b30SLisandro Dalcin NULL, 2721f4259b30SLisandro Dalcin NULL, 2722f4259b30SLisandro Dalcin NULL, 2723f4259b30SLisandro Dalcin /*10*/ NULL, 2724f4259b30SLisandro Dalcin NULL, 2725f4259b30SLisandro Dalcin NULL, 272641f059aeSBarry Smith MatSOR_MPIAIJ, 2727b7c46309SBarry Smith MatTranspose_MPIAIJ, 272897304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2729cda55fadSBarry Smith MatEqual_MPIAIJ, 2730cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2731cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2732cda55fadSBarry Smith MatNorm_MPIAIJ, 273397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2734cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2735cda55fadSBarry Smith MatSetOption_MPIAIJ, 2736cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2737d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2738f4259b30SLisandro Dalcin NULL, 2739f4259b30SLisandro Dalcin NULL, 2740f4259b30SLisandro Dalcin NULL, 2741f4259b30SLisandro Dalcin NULL, 274226cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2743f4259b30SLisandro Dalcin NULL, 2744f4259b30SLisandro Dalcin NULL, 2745a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2746f4259b30SLisandro Dalcin NULL, 2747d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2748f4259b30SLisandro Dalcin NULL, 2749f4259b30SLisandro Dalcin NULL, 2750f4259b30SLisandro Dalcin NULL, 2751f4259b30SLisandro Dalcin NULL, 2752d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27537dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2754cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2755cda55fadSBarry Smith MatGetValues_MPIAIJ, 2756cb5b572fSBarry Smith MatCopy_MPIAIJ, 2757d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2758cda55fadSBarry Smith MatScale_MPIAIJ, 27597d68702bSBarry Smith MatShift_MPIAIJ, 276099e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2761564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 276273a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27638a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27648a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2765f4259b30SLisandro Dalcin NULL, 2766f4259b30SLisandro Dalcin NULL, 276793dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2768f4259b30SLisandro Dalcin NULL, 2769cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 277072e6a0cfSJed Brown MatPermute_MPIAIJ, 2771f4259b30SLisandro Dalcin NULL, 27727dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2773e03a110bSBarry Smith MatDestroy_MPIAIJ, 2774e03a110bSBarry Smith MatView_MPIAIJ, 2775f4259b30SLisandro Dalcin NULL, 2776f4259b30SLisandro Dalcin NULL, 2777f4259b30SLisandro Dalcin /*64*/ NULL, 2778f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2779f4259b30SLisandro Dalcin NULL, 2780f4259b30SLisandro Dalcin NULL, 2781f4259b30SLisandro Dalcin NULL, 2782d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2783c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2784f4259b30SLisandro Dalcin NULL, 2785f4259b30SLisandro Dalcin NULL, 2786f4259b30SLisandro Dalcin NULL, 2787f4259b30SLisandro Dalcin NULL, 27883acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2789b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 2792f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2793f4259b30SLisandro Dalcin /*80*/ NULL, 2794f4259b30SLisandro Dalcin NULL, 2795f4259b30SLisandro Dalcin NULL, 27965bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 27976cff0a6bSPierre Jolivet NULL, 2798f4259b30SLisandro Dalcin NULL, 2799f4259b30SLisandro Dalcin NULL, 2800f4259b30SLisandro Dalcin NULL, 2801f4259b30SLisandro Dalcin NULL, 2802f4259b30SLisandro Dalcin /*89*/ NULL, 2803f4259b30SLisandro Dalcin NULL, 280426be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin NULL, 2807cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2808f4259b30SLisandro Dalcin NULL, 2809f4259b30SLisandro Dalcin NULL, 2810f4259b30SLisandro Dalcin NULL, 2811b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28124222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2813f4259b30SLisandro Dalcin NULL, 2814f4259b30SLisandro Dalcin NULL, 28152fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2816f4259b30SLisandro Dalcin NULL, 2817d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 281899cafbc1SBarry Smith MatRealPart_MPIAIJ, 281969db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2820f4259b30SLisandro Dalcin NULL, 2821f4259b30SLisandro Dalcin NULL, 2822f4259b30SLisandro Dalcin /*109*/ NULL, 2823f4259b30SLisandro Dalcin NULL, 28245494a064SHong Zhang MatGetRowMin_MPIAIJ, 2825f4259b30SLisandro Dalcin NULL, 28263b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2827d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2828f4259b30SLisandro Dalcin NULL, 2829c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2830f4259b30SLisandro Dalcin NULL, 2831f4259b30SLisandro Dalcin NULL, 2832b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2833f4259b30SLisandro Dalcin NULL, 2834f4259b30SLisandro Dalcin NULL, 2835f4259b30SLisandro Dalcin NULL, 2836b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2837f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2838a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2839bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2840a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28417dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2842f4259b30SLisandro Dalcin /*129*/ NULL, 2843f4259b30SLisandro Dalcin NULL, 2844f4259b30SLisandro Dalcin NULL, 2845187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2846f4259b30SLisandro Dalcin NULL, 2847f4259b30SLisandro Dalcin /*134*/ NULL, 2848f4259b30SLisandro Dalcin NULL, 2849f4259b30SLisandro Dalcin NULL, 2850f4259b30SLisandro Dalcin NULL, 2851f4259b30SLisandro Dalcin NULL, 285246533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2853f4259b30SLisandro Dalcin NULL, 2854f4259b30SLisandro Dalcin NULL, 28559c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2856a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28574222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2858f4259b30SLisandro Dalcin /*145*/ NULL, 2859f4259b30SLisandro Dalcin NULL, 286072833a62Smarkadams4 NULL, 286172833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28622d776b49SBarry Smith NULL, 2863dec0b466SHong Zhang /*150*/ NULL, 2864eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 2865eede4a3fSMark Adams MatGetRowSumAbs_MPIAIJ}; 286636ce4990SBarry Smith 2867ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2868d71ae5a4SJacob Faibussowitsch { 28692e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28702e8a6d31SBarry Smith 28712e8a6d31SBarry Smith PetscFunctionBegin; 28729566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28739566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28752e8a6d31SBarry Smith } 28762e8a6d31SBarry Smith 2877ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2878d71ae5a4SJacob Faibussowitsch { 28792e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28802e8a6d31SBarry Smith 28812e8a6d31SBarry Smith PetscFunctionBegin; 28829566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28839566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28852e8a6d31SBarry Smith } 28868a729477SBarry Smith 2887d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2888d71ae5a4SJacob Faibussowitsch { 2889ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 28905d2a9ed1SStefano Zampini PetscMPIInt size; 2891a23d5eceSKris Buschelman 2892a23d5eceSKris Buschelman PetscFunctionBegin; 2893ad79cf63SBarry Smith if (B->hash_active) { 2894aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2895ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2896ad79cf63SBarry Smith } 28979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 28989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2899899cda47SBarry Smith 2900cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2901eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2902cb7b82ddSBarry Smith #else 29039566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2904cb7b82ddSBarry Smith #endif 29059566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29069566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29079566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2908cb7b82ddSBarry Smith 29099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2910c508b908SBarry Smith 2911c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29129566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29139566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29149566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29159566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29169566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2917c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2918cb7b82ddSBarry Smith 2919c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2920ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29219566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29239566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29249566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2925c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2926899cda47SBarry Smith 29279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2929526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2930cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 293115001458SStefano Zampini B->assembled = PETSC_FALSE; 29323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2933a23d5eceSKris Buschelman } 2934a23d5eceSKris Buschelman 2935ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2936d71ae5a4SJacob Faibussowitsch { 2937ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2938846b4da1SFande Kong 2939846b4da1SFande Kong PetscFunctionBegin; 2940846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29419566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2943846b4da1SFande Kong 2944846b4da1SFande Kong #if defined(PETSC_USE_CTABLE) 2945eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2946846b4da1SFande Kong #else 29479566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2948846b4da1SFande Kong #endif 29499566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29519566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2952846b4da1SFande Kong 29539566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->A)); 29549566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->B)); 2955846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2956846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2957846b4da1SFande Kong B->assembled = PETSC_FALSE; 29583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2959846b4da1SFande Kong } 2960846b4da1SFande Kong 2961d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2962d71ae5a4SJacob Faibussowitsch { 2963d6dfbf8fSBarry Smith Mat mat; 2964416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2965d6dfbf8fSBarry Smith 29663a40ed3dSBarry Smith PetscFunctionBegin; 2967f4259b30SLisandro Dalcin *newmat = NULL; 29689566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29699566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29709566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29719566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2972273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2973e1b6402fSHong Zhang 2974d5f3da31SBarry Smith mat->factortype = matin->factortype; 2975501880eeSStefano Zampini mat->assembled = matin->assembled; 2976e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2977d6dfbf8fSBarry Smith 297817699dbbSLois Curfman McInnes a->size = oldmat->size; 297917699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2980e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2981e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2982501880eeSStefano Zampini a->rowindices = NULL; 2983501880eeSStefano Zampini a->rowvalues = NULL; 2984bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2985d6dfbf8fSBarry Smith 29869566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29879566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2988420957c1SBarry Smith if (matin->hash_active) { 2989420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2990420957c1SBarry Smith } else { 2991420957c1SBarry Smith mat->preallocated = matin->preallocated; 29922ee70a88SLois Curfman McInnes if (oldmat->colmap) { 2993aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2994eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2995b1fc9764SSatish Balay #else 29969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 29979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 2998b1fc9764SSatish Balay #endif 2999501880eeSStefano Zampini } else a->colmap = NULL; 30003f41c07dSBarry Smith if (oldmat->garray) { 3001b1d57f15SBarry Smith PetscInt len; 3002d0f46423SBarry Smith len = oldmat->B->cmap->n; 30039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30049566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3005501880eeSStefano Zampini } else a->garray = NULL; 3006d6dfbf8fSBarry Smith 30070de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30080de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30090de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3010aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3011*cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3012*cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3013*cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3014*cff58d65SJunchao Zhang } 30159566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30169566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3017420957c1SBarry Smith } 30189566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30198a729477SBarry Smith *newmat = mat; 30203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30218a729477SBarry Smith } 3022416022c9SBarry Smith 3023d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3024d71ae5a4SJacob Faibussowitsch { 302552f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 302652f91c60SVaclav Hapla 302752f91c60SVaclav Hapla PetscFunctionBegin; 302852f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 302952f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3030c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30319566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30329566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30339566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 303452f91c60SVaclav Hapla if (isbinary) { 30359566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 303652f91c60SVaclav Hapla } else if (ishdf5) { 303752f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30389566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 303952f91c60SVaclav Hapla #else 304052f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 304152f91c60SVaclav Hapla #endif 304252f91c60SVaclav Hapla } else { 304398921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 304452f91c60SVaclav Hapla } 30453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 304652f91c60SVaclav Hapla } 304752f91c60SVaclav Hapla 3048d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3049d71ae5a4SJacob Faibussowitsch { 30503ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30513ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30523ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30538fb81238SShri Abhyankar 30548fb81238SShri Abhyankar PetscFunctionBegin; 30559566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30568fb81238SShri Abhyankar 30573ea6fe3dSLisandro Dalcin /* read in matrix header */ 30589566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 305908401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30609371c9d4SSatish Balay M = header[1]; 30619371c9d4SSatish Balay N = header[2]; 30629371c9d4SSatish Balay nz = header[3]; 306308401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 306408401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 306508401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 306608ea439dSMark F. Adams 30673ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30689566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30693ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30703ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30713ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30729566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30739566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30748fb81238SShri Abhyankar 30753ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30769566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3077aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30788fb81238SShri Abhyankar 30793ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30809566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30829566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30839371c9d4SSatish Balay rowidxs[0] = 0; 30849371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 308538b83642SBarry Smith if (nz != PETSC_MAX_INT) { 30861c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 308708401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 308838b83642SBarry Smith } 308938b83642SBarry Smith 30903ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 30919566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 30929566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 30939566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 30943ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 30959566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 30969566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 30979566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 30983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30998fb81238SShri Abhyankar } 31008fb81238SShri Abhyankar 31013782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3102ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3103d71ae5a4SJacob Faibussowitsch { 31044aa3045dSJed Brown IS iscol_local; 3105c5e4d11fSDmitry Karpeev PetscBool isstride; 3106c5e4d11fSDmitry Karpeev PetscMPIInt lisstride = 0, gisstride; 31073782ecc7SHong Zhang 31083782ecc7SHong Zhang PetscFunctionBegin; 31093782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31109566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31113782ecc7SHong Zhang 3112c5e4d11fSDmitry Karpeev if (isstride) { 3113c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31149566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31159566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31169566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 3117c5e4d11fSDmitry Karpeev if (mstart == start && mlen - mstart == len) lisstride = 1; 3118c5e4d11fSDmitry Karpeev } 31193782ecc7SHong Zhang 31201c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3121c5e4d11fSDmitry Karpeev if (gisstride) { 3122c5e4d11fSDmitry Karpeev PetscInt N; 31239566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31249566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31259566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31269566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3127c5e4d11fSDmitry Karpeev } else { 3128c5bfad50SMark F. Adams PetscInt cbs; 31299566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31309566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31319566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3132b79d0421SJed Brown } 31333782ecc7SHong Zhang 31343782ecc7SHong Zhang *isseq = iscol_local; 31353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3136c5e4d11fSDmitry Karpeev } 31378d2139bdSHong Zhang 3138ddfdf956SHong Zhang /* 31399c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31409c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3141ddfdf956SHong Zhang 3142ddfdf956SHong Zhang Input Parameters: 314327430b45SBarry Smith + mat - matrix 314427430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31459c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 314627430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3147ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 314827430b45SBarry Smith 314927430b45SBarry Smith Output Parameters: 315027430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 315127430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 315227430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 315327430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3154ddfdf956SHong Zhang */ 3155ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[]) 3156d71ae5a4SJacob Faibussowitsch { 3157040216a4SHong Zhang Vec x, cmap; 3158040216a4SHong Zhang const PetscInt *is_idx; 3159040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31609c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3161040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3162040216a4SHong Zhang Mat B = a->B; 3163040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3164a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31658b3fa1f7SHong Zhang MPI_Comm comm; 31663a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31673782ecc7SHong Zhang 31683782ecc7SHong Zhang PetscFunctionBegin; 31699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31709566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31718b3fa1f7SHong Zhang 3172ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31739566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31749566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31759566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31769566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31770a351717SHong Zhang 31789c988bcaSHong Zhang /* Get start indices */ 31799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3180ddfdf956SHong Zhang isstart -= ncols; 31819566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3182040216a4SHong Zhang 31839566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31849566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31859566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3187ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31888b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3189ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 31909c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 31918b3fa1f7SHong Zhang } 31929566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 31939566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 31949566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 31958b3fa1f7SHong Zhang 31969c988bcaSHong Zhang /* Get iscol_d */ 31979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 31989566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 31999566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3200feb78a15SHong Zhang 32019c988bcaSHong Zhang /* Get isrow_d */ 32029566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3203feb78a15SHong Zhang rstart = mat->rmap->rstart; 32049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32059566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32069c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32079566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3208feb78a15SHong Zhang 32099566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32109566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32119566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3212feb78a15SHong Zhang 32139c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32149566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32159566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3216ddfdf956SHong Zhang 32179566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 321807250d77SHong Zhang 32199566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32209566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 322164efcef9SHong Zhang 32229c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3223ddfdf956SHong Zhang /* off-process column indices */ 32249c988bcaSHong Zhang count = 0; 32259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3227feb78a15SHong Zhang 32289566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32299566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32308b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3231f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32329c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32331c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32341c645242SHong Zhang count++; 32358b3fa1f7SHong Zhang } 32368b3fa1f7SHong Zhang } 32379566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32389566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 323907250d77SHong Zhang 32409566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3241b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3242b6d9b4e0SHong Zhang 32439566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32449c988bcaSHong Zhang *garray = cmap1; 32459c988bcaSHong Zhang 32469566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32479566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3250040216a4SHong Zhang } 3251040216a4SHong Zhang 3252b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3253d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3254d71ae5a4SJacob Faibussowitsch { 3255b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32561fd43edeSHong Zhang Mat M = NULL; 32573b00a383SHong Zhang MPI_Comm comm; 3258b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32593b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3260b20e2604SHong Zhang PetscInt n; 32613b00a383SHong Zhang 32623b00a383SHong Zhang PetscFunctionBegin; 32639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32643b00a383SHong Zhang 32653b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3266b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 326828b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32693b00a383SHong Zhang 32709566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 327128b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32723b00a383SHong Zhang 32739566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 327428b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32753b00a383SHong Zhang 3276b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3277b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32789566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32799566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 328048a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32833b00a383SHong Zhang 32843b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 32859c988bcaSHong Zhang const PetscInt *garray; 3286b20e2604SHong Zhang PetscInt BsubN; 32873b00a383SHong Zhang 3288b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32899566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 32903b00a383SHong Zhang 3291b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 32929566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 32939566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 32943b00a383SHong Zhang 32959c988bcaSHong Zhang /* Create submatrix M */ 32969566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M)); 32973b00a383SHong Zhang 3298b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3299b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33007cfce09cSHong Zhang 33019566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3302b20e2604SHong Zhang n = asub->B->cmap->N; 3303b20e2604SHong Zhang if (BsubN > n) { 3304c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33057cfce09cSHong Zhang const PetscInt *idx; 33069c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33079566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33087cfce09cSHong Zhang 33099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33107cfce09cSHong Zhang j = 0; 33119566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3312b20e2604SHong Zhang for (i = 0; i < n; i++) { 33137cfce09cSHong Zhang if (j >= BsubN) break; 33149c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33157cfce09cSHong Zhang 33169c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33177cfce09cSHong Zhang idx_new[i] = idx[j++]; 331898921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33197cfce09cSHong Zhang } 33209566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33217cfce09cSHong Zhang 33229566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33239566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33247cfce09cSHong Zhang 3325b20e2604SHong Zhang } else if (BsubN < n) { 332698921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3327b20e2604SHong Zhang } 33287cfce09cSHong Zhang 33299566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3330b20e2604SHong Zhang *submat = M; 33313b00a383SHong Zhang 3332e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33339566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33353b00a383SHong Zhang 33369566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33383b00a383SHong Zhang 33399566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33413b00a383SHong Zhang } 33423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33433b00a383SHong Zhang } 33443b00a383SHong Zhang 3345d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3346d71ae5a4SJacob Faibussowitsch { 33471358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33483782ecc7SHong Zhang PetscInt csize; 334918e627e3SHong Zhang PetscInt n, i, j, start, end; 33504a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33513782ecc7SHong Zhang MPI_Comm comm; 33523782ecc7SHong Zhang 33533782ecc7SHong Zhang PetscFunctionBegin; 3354bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3355a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33568f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33579566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3358d5761cdaSHong Zhang if (isrow_d) { 3359d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3360d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3361d5761cdaSHong Zhang } else { 33629566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3363d5761cdaSHong Zhang if (iscol_local) { 3364d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3365d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3366d5761cdaSHong Zhang } 3367d5761cdaSHong Zhang } 33688f69fa7bSHong Zhang } else { 3369e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 337018e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33719566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33723782ecc7SHong Zhang if (!n) { 337318e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33743782ecc7SHong Zhang } else { 33759566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33769566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3377ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33788f69fa7bSHong Zhang } 33793782ecc7SHong Zhang 3380e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 338118e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33829566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 338318e627e3SHong Zhang if (!n) { 338418e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 338518e627e3SHong Zhang } else { 33869566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33879566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 338818e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 338918e627e3SHong Zhang } 339018e627e3SHong Zhang 33919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 33921c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 339318e627e3SHong Zhang sameRowDist = tsameDist[0]; 339418e627e3SHong Zhang } 339518e627e3SHong Zhang 339618e627e3SHong Zhang if (sameRowDist) { 3397b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 33983b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 33999566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3401b20e2604SHong Zhang } else { /* sameRowDist */ 34023b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34031358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34041358a193SHong Zhang PetscBool sorted; 34059566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34069566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34079566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 340808401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34091358a193SHong Zhang 34109566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34111358a193SHong Zhang if (sorted) { 34121358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34139566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34153782ecc7SHong Zhang } 34161358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 341748c0d076SHong Zhang IS iscol_sub; 34189566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 341948c0d076SHong Zhang if (iscol_sub) { 34209566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 342248c0d076SHong Zhang } 34231358a193SHong Zhang } 34241358a193SHong Zhang } 34251358a193SHong Zhang } 34263782ecc7SHong Zhang 3427bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34283782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34299566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 343028b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34313782ecc7SHong Zhang } else { 343248a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34331358a193SHong Zhang } 34343782ecc7SHong Zhang 34359566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34369566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34378f69fa7bSHong Zhang 3438b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34399566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3441b79d0421SJed Brown } 34423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34434aa3045dSJed Brown } 34444aa3045dSJed Brown 3445feb78a15SHong Zhang /*@C 344611a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3447feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3448feb78a15SHong Zhang 3449d083f849SBarry Smith Collective 3450feb78a15SHong Zhang 3451feb78a15SHong Zhang Input Parameters: 3452feb78a15SHong Zhang + comm - MPI communicator 3453feb78a15SHong Zhang . A - "diagonal" portion of matrix 3454b20e2604SHong Zhang . B - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine 34552ef1f0ffSBarry Smith - garray - global index of `B` columns 3456feb78a15SHong Zhang 3457feb78a15SHong Zhang Output Parameter: 34582ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 345927430b45SBarry Smith 3460feb78a15SHong Zhang Level: advanced 3461feb78a15SHong Zhang 3462feb78a15SHong Zhang Notes: 346311a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 346411a5261eSBarry Smith 34652ef1f0ffSBarry Smith `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore. 3466feb78a15SHong Zhang 34671cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3468feb78a15SHong Zhang @*/ 3469d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat) 3470d71ae5a4SJacob Faibussowitsch { 3471feb78a15SHong Zhang Mat_MPIAIJ *maij; 3472e489de8fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data, *bnew; 3473a5348796SHong Zhang PetscInt *oi = b->i, *oj = b->j, i, nz, col; 3474ce496241SStefano Zampini const PetscScalar *oa; 3475e489de8fSHong Zhang Mat Bnew; 3476feb78a15SHong Zhang PetscInt m, n, N; 34774ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3478feb78a15SHong Zhang 3479feb78a15SHong Zhang PetscFunctionBegin; 34809566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 34819566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 348208401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 348337a5e0faSPierre Jolivet PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3484b6d9b4e0SHong Zhang /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */ 348508401ef6SPierre Jolivet /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */ 3486feb78a15SHong Zhang 3487e489de8fSHong Zhang /* Get global columns of mat */ 34881c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm)); 3489feb78a15SHong Zhang 34909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N)); 34914ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 34924ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 34934ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 34944ab4d6f4SRichard Tran Mills 349537a5e0faSPierre Jolivet if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3496feb78a15SHong Zhang maij = (Mat_MPIAIJ *)(*mat)->data; 3497feb78a15SHong Zhang 3498feb78a15SHong Zhang (*mat)->preallocated = PETSC_TRUE; 3499feb78a15SHong Zhang 35009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 35019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3502feb78a15SHong Zhang 3503e489de8fSHong Zhang /* Set A as diagonal portion of *mat */ 3504feb78a15SHong Zhang maij->A = A; 3505feb78a15SHong Zhang 3506a5348796SHong Zhang nz = oi[m]; 3507a5348796SHong Zhang for (i = 0; i < nz; i++) { 3508a5348796SHong Zhang col = oj[i]; 3509a5348796SHong Zhang oj[i] = garray[col]; 3510feb78a15SHong Zhang } 3511feb78a15SHong Zhang 3512e489de8fSHong Zhang /* Set Bnew as off-diagonal portion of *mat */ 35139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &oa)); 35149566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew)); 35159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &oa)); 3516e489de8fSHong Zhang bnew = (Mat_SeqAIJ *)Bnew->data; 3517e489de8fSHong Zhang bnew->maxnz = b->maxnz; /* allocated nonzeros of B */ 3518e489de8fSHong Zhang maij->B = Bnew; 3519d5761cdaSHong Zhang 352008401ef6SPierre Jolivet PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N); 3521d5761cdaSHong Zhang 3522e489de8fSHong Zhang b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */ 3523d5761cdaSHong Zhang b->free_a = PETSC_FALSE; 3524d5761cdaSHong Zhang b->free_ij = PETSC_FALSE; 35259566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 3526d5761cdaSHong Zhang 3527e489de8fSHong Zhang bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */ 3528e489de8fSHong Zhang bnew->free_a = PETSC_TRUE; 3529e489de8fSHong Zhang bnew->free_ij = PETSC_TRUE; 3530feb78a15SHong Zhang 3531a5348796SHong Zhang /* condense columns of maij->B */ 35329566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 35339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 35349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 35359566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 35369566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3538feb78a15SHong Zhang } 3539feb78a15SHong Zhang 3540ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35414aa3045dSJed Brown 3542d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3543d71ae5a4SJacob Faibussowitsch { 354498b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 354585f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 354698b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35471fd43edeSHong Zhang Mat M, Msub, B = a->B; 354898b658c4SHong Zhang MatScalar *aa; 354900e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3550a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 355198b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 355298b658c4SHong Zhang IS iscol_sub, iscmap; 355398b658c4SHong Zhang const PetscInt *is_idx, *cmap; 355418e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3555a31a438cSHong Zhang MPI_Comm comm; 35567e2c5f70SBarry Smith 3557a0ff6018SBarry Smith PetscFunctionBegin; 35589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3559d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35609566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 356128b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35629566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3563d5761cdaSHong Zhang 35649566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 356528b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3566d5761cdaSHong Zhang 35679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 356828b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3569d5761cdaSHong Zhang 35709566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3571d5761cdaSHong Zhang 3572d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35733b00a383SHong Zhang PetscBool flg; 35743b00a383SHong Zhang 35759566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35769566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3577bcae8d28SHong Zhang 35783b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3579366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35809566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3581366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 35821c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3583366a327dSHong Zhang if (allcolumns) { 3584366a327dSHong Zhang iscol_sub = iscol_local; 35859566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35869566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3587366a327dSHong Zhang 35883b00a383SHong Zhang } else { 35891358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3590244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 35929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 35939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 35948d2139bdSHong Zhang count = 0; 3595a31a438cSHong Zhang k = 0; 3596a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3597a31a438cSHong Zhang j = is_idx[i]; 3598a31a438cSHong Zhang if (j >= cstart && j < cend) { 3599a31a438cSHong Zhang /* diagonal part of mat */ 36008d2139bdSHong Zhang idx[count] = j; 3601366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36024a3daf6eSHong Zhang } else if (Bn) { 3603a31a438cSHong Zhang /* off-diagonal part of mat */ 3604a31a438cSHong Zhang if (j == garray[k]) { 36058d2139bdSHong Zhang idx[count] = j; 3606a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3607a31a438cSHong Zhang } else if (j > garray[k]) { 3608a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3609a31a438cSHong Zhang if (j == garray[k]) { 3610a31a438cSHong Zhang idx[count] = j; 3611a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36128d2139bdSHong Zhang } 36138d2139bdSHong Zhang } 36148d2139bdSHong Zhang } 36158d2139bdSHong Zhang } 36169566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36178d2139bdSHong Zhang 36189566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36199566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36209566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3621b6d9b4e0SHong Zhang 36229566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3623a31a438cSHong Zhang } 36248b3fa1f7SHong Zhang 36253b00a383SHong Zhang /* (3) Create sequential Msub */ 36269566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3627d5761cdaSHong Zhang } 36288d2139bdSHong Zhang 36299566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 363098b658c4SHong Zhang aij = (Mat_SeqAIJ *)(Msub)->data; 363198b658c4SHong Zhang ii = aij->i; 36329566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3633a0ff6018SBarry Smith 3634a0ff6018SBarry Smith /* 3635a0ff6018SBarry Smith m - number of local rows 3636a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3637a0ff6018SBarry Smith rstart - first row in new global matrix generated 3638a0ff6018SBarry Smith */ 36399566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 364098b658c4SHong Zhang 36413b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36423b00a383SHong Zhang /* (4) Create parallel newmat */ 364398b658c4SHong Zhang PetscMPIInt rank, size; 3644bcae8d28SHong Zhang PetscInt csize; 364598b658c4SHong Zhang 36469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 364800e6dbe6SBarry Smith 3649a0ff6018SBarry Smith /* 365000e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 365100e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3652a0ff6018SBarry Smith */ 365300e6dbe6SBarry Smith 365400e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36559566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36566a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36579566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3658a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3659e2c4fddaSBarry Smith nlocal = m; 36606a6a5d1dSBarry Smith } else { 3661a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3662ab50ec6bSBarry Smith } 3663ab50ec6bSBarry Smith } else { 36646a6a5d1dSBarry Smith nlocal = csize; 36656a6a5d1dSBarry Smith } 36669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 366700e6dbe6SBarry Smith rstart = rend - nlocal; 3668aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 366900e6dbe6SBarry Smith 367000e6dbe6SBarry Smith /* next, compute all the lengths */ 367198b658c4SHong Zhang jj = aij->j; 36729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 367300e6dbe6SBarry Smith olens = dlens + m; 367400e6dbe6SBarry Smith for (i = 0; i < m; i++) { 367500e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 367600e6dbe6SBarry Smith olen = 0; 367700e6dbe6SBarry Smith dlen = 0; 367800e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 367915b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 368000e6dbe6SBarry Smith else dlen++; 368100e6dbe6SBarry Smith jj++; 368200e6dbe6SBarry Smith } 368300e6dbe6SBarry Smith olens[i] = olen; 368400e6dbe6SBarry Smith dlens[i] = dlen; 368500e6dbe6SBarry Smith } 3686b6d9b4e0SHong Zhang 36879566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36889566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 368998b658c4SHong Zhang 36909566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36919566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 36929566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 36939566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 36949566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 36959566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3696d5761cdaSHong Zhang 3697d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3698a0ff6018SBarry Smith M = *newmat; 36999566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 370008401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37019566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3702c48de900SBarry Smith /* 3703c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3704c48de900SBarry Smith rather than the slower MatSetValues(). 3705c48de900SBarry Smith */ 3706c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3707c48de900SBarry Smith M->assembled = PETSC_FALSE; 3708a0ff6018SBarry Smith } 3709548ecf4dSHong Zhang 37103b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37129566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 371398b658c4SHong Zhang 371498b658c4SHong Zhang jj = aij->j; 37159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3716a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3717a0ff6018SBarry Smith row = rstart + i; 371800e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 371915b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37209566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37219371c9d4SSatish Balay jj += nz; 37229371c9d4SSatish Balay aa += nz; 3723a0ff6018SBarry Smith } 37249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37259566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3726a0ff6018SBarry Smith 37279566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37289566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3729fee21e36SBarry Smith 37309566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 373198b658c4SHong Zhang 373298b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3733fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37343b00a383SHong Zhang *newmat = M; 3735f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37369566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 373798b658c4SHong Zhang 3738f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 374098b658c4SHong Zhang 3741f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3743bcae8d28SHong Zhang 3744bcae8d28SHong Zhang if (iscol_local) { 3745f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3747bcae8d28SHong Zhang } 374898b658c4SHong Zhang } 37493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3750a0ff6018SBarry Smith } 3751273d9f13SBarry Smith 3752df40acb1SHong Zhang /* 3753df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3754df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3755df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3756df40acb1SHong Zhang 375711a5261eSBarry Smith This requires a sequential iscol with all indices. 3758df40acb1SHong Zhang */ 3759d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3760d71ae5a4SJacob Faibussowitsch { 3761df40acb1SHong Zhang PetscMPIInt rank, size; 3762df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3763df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3764df40acb1SHong Zhang Mat M, Mreuse; 376598b658c4SHong Zhang MatScalar *aa, *vwork; 3766df40acb1SHong Zhang MPI_Comm comm; 3767df40acb1SHong Zhang Mat_SeqAIJ *aij; 37680b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3769df40acb1SHong Zhang 3770df40acb1SHong Zhang PetscFunctionBegin; 37719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3774df40acb1SHong Zhang 37750b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37769566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37779566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37780b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 37791c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37800b27a90eSHong Zhang 3781df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37829566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 378328b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37849566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3785df40acb1SHong Zhang } else { 37869566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3787df40acb1SHong Zhang } 3788df40acb1SHong Zhang 3789df40acb1SHong Zhang /* 3790df40acb1SHong Zhang m - number of local rows 3791df40acb1SHong Zhang n - number of columns (same on all processors) 3792df40acb1SHong Zhang rstart - first row in new global matrix generated 3793df40acb1SHong Zhang */ 37949566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 37959566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3796df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 3797df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3798df40acb1SHong Zhang ii = aij->i; 3799df40acb1SHong Zhang jj = aij->j; 3800df40acb1SHong Zhang 3801df40acb1SHong Zhang /* 3802df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3803df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3804df40acb1SHong Zhang */ 3805df40acb1SHong Zhang 3806df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3807df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38089566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3809df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3810df40acb1SHong Zhang nlocal = m; 3811df40acb1SHong Zhang } else { 3812df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3813df40acb1SHong Zhang } 3814df40acb1SHong Zhang } else { 3815df40acb1SHong Zhang nlocal = csize; 3816df40acb1SHong Zhang } 38179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3818df40acb1SHong Zhang rstart = rend - nlocal; 3819aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3820df40acb1SHong Zhang 3821df40acb1SHong Zhang /* next, compute all the lengths */ 38229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3823df40acb1SHong Zhang olens = dlens + m; 3824df40acb1SHong Zhang for (i = 0; i < m; i++) { 3825df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3826df40acb1SHong Zhang olen = 0; 3827df40acb1SHong Zhang dlen = 0; 3828df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3829df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3830df40acb1SHong Zhang else dlen++; 3831df40acb1SHong Zhang jj++; 3832df40acb1SHong Zhang } 3833df40acb1SHong Zhang olens[i] = olen; 3834df40acb1SHong Zhang dlens[i] = dlen; 3835df40acb1SHong Zhang } 38369566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38389566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38399566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38409566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38419566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3842df40acb1SHong Zhang } else { 3843df40acb1SHong Zhang PetscInt ml, nl; 3844df40acb1SHong Zhang 3845df40acb1SHong Zhang M = *newmat; 38469566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 384708401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38489566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3849df40acb1SHong Zhang /* 3850df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3851df40acb1SHong Zhang rather than the slower MatSetValues(). 3852df40acb1SHong Zhang */ 3853df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3854df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3855df40acb1SHong Zhang } 38569566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 3857df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3858df40acb1SHong Zhang ii = aij->i; 3859df40acb1SHong Zhang jj = aij->j; 38602e5835c6SStefano Zampini 38612e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3863df40acb1SHong Zhang for (i = 0; i < m; i++) { 3864df40acb1SHong Zhang row = rstart + i; 3865df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38669371c9d4SSatish Balay cwork = jj; 38678e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38689371c9d4SSatish Balay vwork = aa; 38698e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38709566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3871df40acb1SHong Zhang } 38729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3873df40acb1SHong Zhang 38749566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38759566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3876df40acb1SHong Zhang *newmat = M; 3877df40acb1SHong Zhang 3878df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3879df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38809566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38819566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3882df40acb1SHong Zhang } 38833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3884df40acb1SHong Zhang } 3885df40acb1SHong Zhang 3886ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3887d71ae5a4SJacob Faibussowitsch { 38886a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 3889899cda47SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii; 3890ccd8e176SBarry Smith const PetscInt *JJ; 3891eeb24464SBarry Smith PetscBool nooffprocentries; 38926a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3893ccd8e176SBarry Smith 3894ccd8e176SBarry Smith PetscFunctionBegin; 3895aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]); 3896899cda47SBarry Smith 38979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 38989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3899d0f46423SBarry Smith m = B->rmap->n; 3900d0f46423SBarry Smith cstart = B->cmap->rstart; 3901d0f46423SBarry Smith cend = B->cmap->rend; 3902d0f46423SBarry Smith rstart = B->rmap->rstart; 3903899cda47SBarry Smith 39049566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3905ccd8e176SBarry Smith 390676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39078f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3908ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39098e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 391008401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 391108401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 391208401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3913ecc77c7aSBarry Smith } 391476bd3646SJed Brown } 3915ecc77c7aSBarry Smith 39168f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3917b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39188e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 3919ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3920ccd8e176SBarry Smith d = 0; 39210daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39220daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3923ccd8e176SBarry Smith } 3924ccd8e176SBarry Smith d_nnz[i] = d; 3925ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3926ccd8e176SBarry Smith } 39279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39289566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3929ccd8e176SBarry Smith 39308f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3931ccd8e176SBarry Smith ii = i + rstart; 39328e3a54c0SPierre Jolivet PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES)); 3933ccd8e176SBarry Smith } 3934eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3935eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39369566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39379566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3938eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3939ccd8e176SBarry Smith 39406a3d2595SBarry Smith /* count number of entries below block diagonal */ 39416a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39426a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39436a3d2595SBarry Smith Aij->ld = ld; 39446a3d2595SBarry Smith for (i = 0; i < m; i++) { 39456a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39466a3d2595SBarry Smith j = 0; 3947ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39486a3d2595SBarry Smith ld[i] = j; 3949720a2405SPierre Jolivet if (J) J += nnz; 39506a3d2595SBarry Smith } 39516a3d2595SBarry Smith 39529566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3954ccd8e176SBarry Smith } 3955ccd8e176SBarry Smith 39561eea217eSSatish Balay /*@ 395711a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3958ccd8e176SBarry Smith (the default parallel PETSc format). 3959ccd8e176SBarry Smith 3960d083f849SBarry Smith Collective 3961ccd8e176SBarry Smith 3962ccd8e176SBarry Smith Input Parameters: 3963a1661176SMatthew Knepley + B - the matrix 3964d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3965d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3966ccd8e176SBarry Smith - v - optional values in the matrix 3967ccd8e176SBarry Smith 3968ccd8e176SBarry Smith Level: developer 3969ccd8e176SBarry Smith 397012251496SSatish Balay Notes: 39712ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39722ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 397311a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 397412251496SSatish Balay 39752ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 397612251496SSatish Balay 3977a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3978a4bd8bc0SBarry Smith 3979a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3980a4bd8bc0SBarry Smith 3981a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3982a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3983a4bd8bc0SBarry Smith 398412251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 398512251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3986c5e4d11fSDmitry Karpeev as shown 398727430b45SBarry Smith .vb 398827430b45SBarry Smith 1 0 0 398927430b45SBarry Smith 2 0 3 P0 399027430b45SBarry Smith ------- 399127430b45SBarry Smith 4 5 6 P1 399227430b45SBarry Smith 399327430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 399427430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 399527430b45SBarry Smith j = {0,0,2} [size = 3] 399627430b45SBarry Smith v = {1,2,3} [size = 3] 399727430b45SBarry Smith 399827430b45SBarry Smith Process1 [P1] rows_owned=[2] 399927430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 400027430b45SBarry Smith j = {0,1,2} [size = 3] 400127430b45SBarry Smith v = {4,5,6} [size = 3] 400227430b45SBarry Smith .ve 400312251496SSatish Balay 4004fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4005a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4006ccd8e176SBarry Smith @*/ 4007d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4008d71ae5a4SJacob Faibussowitsch { 4009ccd8e176SBarry Smith PetscFunctionBegin; 4010cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4012ccd8e176SBarry Smith } 4013ccd8e176SBarry Smith 4014273d9f13SBarry Smith /*@C 401511a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4016273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4017273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 401820f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4019273d9f13SBarry Smith 4020d083f849SBarry Smith Collective 4021273d9f13SBarry Smith 4022273d9f13SBarry Smith Input Parameters: 40231c4f3114SJed Brown + B - the matrix 4024273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4025273d9f13SBarry Smith (same value is used for all local rows) 4026273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4027273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40282ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4029273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40303287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40313287b5eaSJed Brown the diagonal entry even if it is zero. 4032273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4033273d9f13SBarry Smith submatrix (same value is used for all local rows). 4034273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4035273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40362ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4037273d9f13SBarry Smith structure. The size of this array is equal to the number 4038273d9f13SBarry Smith of local rows, i.e 'm'. 4039273d9f13SBarry Smith 40402920cce0SJacob Faibussowitsch Example Usage: 404127430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 404227430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 404327430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 404427430b45SBarry Smith as follows 404527430b45SBarry Smith 404627430b45SBarry Smith .vb 404727430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 404827430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 404927430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 405027430b45SBarry Smith ------------------------------------- 405127430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 405227430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 405327430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 405427430b45SBarry Smith ------------------------------------- 405527430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 405627430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 405727430b45SBarry Smith .ve 405827430b45SBarry Smith 405927430b45SBarry Smith This can be represented as a collection of submatrices as 406027430b45SBarry Smith .vb 406127430b45SBarry Smith A B C 406227430b45SBarry Smith D E F 406327430b45SBarry Smith G H I 406427430b45SBarry Smith .ve 406527430b45SBarry Smith 406627430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 406727430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 406827430b45SBarry Smith 406927430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407027430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407127430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 407227430b45SBarry Smith 407327430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 407427430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 407527430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 407627430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 407727430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 407827430b45SBarry Smith matrix, ans [DF] as another `MATSEQAIJ` matrix. 407927430b45SBarry Smith 408020f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 408120f4b53cSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 408227430b45SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 408320f4b53cSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 408427430b45SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 408520f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 408627430b45SBarry Smith .vb 408727430b45SBarry Smith proc0 dnz = 2, o_nz = 2 408827430b45SBarry Smith proc1 dnz = 3, o_nz = 2 408927430b45SBarry Smith proc2 dnz = 1, o_nz = 4 409027430b45SBarry Smith .ve 409120f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 409227430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 409327430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 409427430b45SBarry Smith 34 values. 409527430b45SBarry Smith 409620f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 409727430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 409820f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 409927430b45SBarry Smith .vb 410027430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 410127430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 410227430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 410327430b45SBarry Smith .ve 410427430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 410527430b45SBarry Smith hence pre-allocation is perfect. 410627430b45SBarry Smith 410727430b45SBarry Smith Level: intermediate 410827430b45SBarry Smith 410927430b45SBarry Smith Notes: 411049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 411149a6f317SBarry Smith 411227430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41130598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4114651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4115273d9f13SBarry Smith 4116273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4117273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4118273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4119273d9f13SBarry Smith 4120273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4121a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4122a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4123a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4124a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4125a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4126a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4127a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4128a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4129273d9f13SBarry Smith 41302ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4131273d9f13SBarry Smith 413227430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4133aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 413427430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4135aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4136aa95bbe8SBarry Smith 41371cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4138a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4139273d9f13SBarry Smith @*/ 4140d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4141d71ae5a4SJacob Faibussowitsch { 4142273d9f13SBarry Smith PetscFunctionBegin; 41436ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41446ba663aaSJed Brown PetscValidType(B, 1); 4145cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4147273d9f13SBarry Smith } 4148273d9f13SBarry Smith 414958d36128SBarry Smith /*@ 415011a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41518f8f2f0dSBarry Smith CSR format for the local rows. 41522fb0ec9aSBarry Smith 4153d083f849SBarry Smith Collective 41542fb0ec9aSBarry Smith 41552fb0ec9aSBarry Smith Input Parameters: 41562fb0ec9aSBarry Smith + comm - MPI communicator 415711a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41582fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4159d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4160d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4161d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4162d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41635693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41645693b835SJunchao Zhang . j - global column indices 4165f1f2ae84SBarry Smith - a - optional matrix values 41662fb0ec9aSBarry Smith 41672fb0ec9aSBarry Smith Output Parameter: 41682fb0ec9aSBarry Smith . mat - the matrix 416903bfb495SBarry Smith 41702fb0ec9aSBarry Smith Level: intermediate 41712fb0ec9aSBarry Smith 41722fb0ec9aSBarry Smith Notes: 41732ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4174d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4175d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41762fb0ec9aSBarry Smith 41772ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 417812251496SSatish Balay 41795693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4180a4bd8bc0SBarry Smith 41815693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4182a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4183a4bd8bc0SBarry Smith 418412251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4185d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4186c5e4d11fSDmitry Karpeev as shown 41872ef1f0ffSBarry Smith .vb 41882ef1f0ffSBarry Smith 1 0 0 41892ef1f0ffSBarry Smith 2 0 3 P0 41902ef1f0ffSBarry Smith ------- 41912ef1f0ffSBarry Smith 4 5 6 P1 41928f8f2f0dSBarry Smith 41932ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 41942ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 41952ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 41962ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 41972fb0ec9aSBarry Smith 41982ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 41992ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 42002ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 42012ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42022ef1f0ffSBarry Smith .ve 42032ef1f0ffSBarry Smith 4204d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42055693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42062fb0ec9aSBarry Smith @*/ 4207d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4208d71ae5a4SJacob Faibussowitsch { 42092fb0ec9aSBarry Smith PetscFunctionBegin; 421008401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 421108401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42129566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42149566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42159566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42169566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42182fb0ec9aSBarry Smith } 42192fb0ec9aSBarry Smith 42208f8f2f0dSBarry Smith /*@ 422111a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42222ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42232ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42246a3d2595SBarry Smith 42256a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42268f8f2f0dSBarry Smith 42278f8f2f0dSBarry Smith Collective 42288f8f2f0dSBarry Smith 42298f8f2f0dSBarry Smith Input Parameters: 42308f8f2f0dSBarry Smith + mat - the matrix 423111a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42328f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 423311a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42348f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 423511a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 423611a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42378f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42388f8f2f0dSBarry Smith . J - column indices 42398f8f2f0dSBarry Smith - v - matrix values 42408f8f2f0dSBarry Smith 42412ef1f0ffSBarry Smith Level: deprecated 42428f8f2f0dSBarry Smith 42431cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4244a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42458f8f2f0dSBarry Smith @*/ 4246d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4247d71ae5a4SJacob Faibussowitsch { 42486a3d2595SBarry Smith PetscInt nnz, i; 42498f8f2f0dSBarry Smith PetscBool nooffprocentries; 42508f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4251fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4252fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42538f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42546a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42556a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42568f8f2f0dSBarry Smith 42578f8f2f0dSBarry Smith PetscFunctionBegin; 4258aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 425908401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 426008401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 426108401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42628f8f2f0dSBarry Smith 42639566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42658f8f2f0dSBarry Smith 42668f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42674c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42684c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42694c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42704c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42714c17f1ccSBarry Smith } 42724c17f1ccSBarry Smith } 42738f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42748f8f2f0dSBarry Smith Iii = Ii[i]; 42758f8f2f0dSBarry Smith ldi = ld[i]; 42768f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42779566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42789566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42799566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42808f8f2f0dSBarry Smith ad += md; 42818f8f2f0dSBarry Smith ao += nnz - md; 42828f8f2f0dSBarry Smith } 42838f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42848f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42879566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42889566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42899566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42909566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42919566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42928f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 42933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42948f8f2f0dSBarry Smith } 42958f8f2f0dSBarry Smith 42966a3d2595SBarry Smith /*@ 429711a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 42986a3d2595SBarry Smith 42996a3d2595SBarry Smith Collective 43006a3d2595SBarry Smith 43016a3d2595SBarry Smith Input Parameters: 43026a3d2595SBarry Smith + mat - the matrix 43036a3d2595SBarry Smith - v - matrix values, stored by row 43046a3d2595SBarry Smith 43056a3d2595SBarry Smith Level: intermediate 43066a3d2595SBarry Smith 4307a4bd8bc0SBarry Smith Notes: 43086a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43096a3d2595SBarry Smith 4310a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4311a4bd8bc0SBarry Smith 43121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4313a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43146a3d2595SBarry Smith @*/ 4315d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4316d71ae5a4SJacob Faibussowitsch { 43176a3d2595SBarry Smith PetscInt nnz, i, m; 43186a3d2595SBarry Smith PetscBool nooffprocentries; 43196a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43206a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43216a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43226a3d2595SBarry Smith PetscScalar *ad, *ao; 43236a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43246a3d2595SBarry Smith PetscInt ldi, Iii, md; 43256a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43266a3d2595SBarry Smith 43276a3d2595SBarry Smith PetscFunctionBegin; 43286a3d2595SBarry Smith m = mat->rmap->n; 43296a3d2595SBarry Smith 43306a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43316a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43326a3d2595SBarry Smith Iii = 0; 43336a3d2595SBarry Smith for (i = 0; i < m; i++) { 43346a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43356a3d2595SBarry Smith ldi = ld[i]; 43366a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43376a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43386a3d2595SBarry Smith ad += md; 4339810441c8SPierre Jolivet if (ao) { 4340810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4341810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43426a3d2595SBarry Smith ao += nnz - md; 4343810441c8SPierre Jolivet } 43446a3d2595SBarry Smith Iii += nnz; 43456a3d2595SBarry Smith } 43466a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43476a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43486a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43496a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43506a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43516a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43526a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43536a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43546a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43556a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43576a3d2595SBarry Smith } 43586a3d2595SBarry Smith 4359273d9f13SBarry Smith /*@C 436011a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4361273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4362273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43632ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4364273d9f13SBarry Smith 4365d083f849SBarry Smith Collective 4366273d9f13SBarry Smith 4367273d9f13SBarry Smith Input Parameters: 4368273d9f13SBarry Smith + comm - MPI communicator 436911a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4370273d9f13SBarry Smith This value should be the same as the local size used in creating the 4371273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4372273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 437345f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4374273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 437511a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 437611a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4377273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4378273d9f13SBarry Smith (same value is used for all local rows) 4379273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4380273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43812ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4382273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4383273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4384273d9f13SBarry Smith submatrix (same value is used for all local rows). 4385273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4386273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43872ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4388273d9f13SBarry Smith structure. The size of this array is equal to the number 4389273d9f13SBarry Smith of local rows, i.e 'm'. 4390273d9f13SBarry Smith 4391273d9f13SBarry Smith Output Parameter: 4392273d9f13SBarry Smith . A - the matrix 4393273d9f13SBarry Smith 439427430b45SBarry Smith Options Database Keys: 439527430b45SBarry Smith + -mat_no_inode - Do not use inodes 439627430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 439727430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4398727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4399727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 440027430b45SBarry Smith 44012ef1f0ffSBarry Smith Level: intermediate 44022ef1f0ffSBarry Smith 440327430b45SBarry Smith Notes: 440477433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4405f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 440611a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4407175b88e8SBarry Smith 440849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 440949a6f317SBarry Smith 44102ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44112ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4412273d9f13SBarry Smith storage requirements for this matrix. 4413273d9f13SBarry Smith 441411a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4415273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4416273d9f13SBarry Smith that argument. 4417273d9f13SBarry Smith 4418727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4419727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4420727bdf9bSBarry Smith 4421273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4422273d9f13SBarry Smith (possibly both). 4423273d9f13SBarry Smith 442433a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4425727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4426727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4427727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 442833a7c187SSatish Balay values corresponding to [m x N] submatrix. 4429273d9f13SBarry Smith 443033a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 443133a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4432df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 443333a7c187SSatish Balay 443433a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 443533a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 443633a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 443733a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 443833a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 443933a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 444033a7c187SSatish Balay illustrates this concept. 444133a7c187SSatish Balay 444233a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 444333a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 444433a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 444533a7c187SSatish Balay local matrix (a rectangular submatrix). 4446273d9f13SBarry Smith 44472ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4448273d9f13SBarry Smith 444997d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44502ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4451da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4452da57b5cdSKarl Rupp .vb 44532ef1f0ffSBarry Smith MatCreate(..., &A); 44542ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44552ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44562ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4457da57b5cdSKarl Rupp .ve 445897d05335SKris Buschelman 4459273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4460273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4461273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4462273d9f13SBarry Smith 44632920cce0SJacob Faibussowitsch Example Usage: 4464273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4465273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4466273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4467efc377ccSKarl Rupp as follows 4468273d9f13SBarry Smith 4469273d9f13SBarry Smith .vb 4470273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4471273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4472273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4473273d9f13SBarry Smith ------------------------------------- 4474273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4475273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4476273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4477273d9f13SBarry Smith ------------------------------------- 4478273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4479273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4480273d9f13SBarry Smith .ve 4481273d9f13SBarry Smith 4482da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4483273d9f13SBarry Smith 4484273d9f13SBarry Smith .vb 4485273d9f13SBarry Smith A B C 4486273d9f13SBarry Smith D E F 4487273d9f13SBarry Smith G H I 4488273d9f13SBarry Smith .ve 4489273d9f13SBarry Smith 4490273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4491273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4492273d9f13SBarry Smith 4493273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4494273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4495273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4496273d9f13SBarry Smith 4497273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4498273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4499273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4500273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 450127430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 4502273d9f13SBarry Smith matrix, ans [DF] as another SeqAIJ matrix. 4503273d9f13SBarry Smith 45042ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45052ef1f0ffSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 4506273d9f13SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 45072ef1f0ffSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 4508273d9f13SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45092ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4510273d9f13SBarry Smith .vb 451127430b45SBarry Smith proc0 dnz = 2, o_nz = 2 451227430b45SBarry Smith proc1 dnz = 3, o_nz = 2 451327430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4514273d9f13SBarry Smith .ve 45152ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4516273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4517273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4518273d9f13SBarry Smith 34 values. 4519273d9f13SBarry Smith 45202ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4521a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4522da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4523273d9f13SBarry Smith .vb 452427430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 452527430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 452627430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4527273d9f13SBarry Smith .ve 4528273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4529273d9f13SBarry Smith hence pre-allocation is perfect. 4530273d9f13SBarry Smith 45311cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4532727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4533727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4534273d9f13SBarry Smith @*/ 4535d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4536d71ae5a4SJacob Faibussowitsch { 4537b1d57f15SBarry Smith PetscMPIInt size; 4538273d9f13SBarry Smith 4539273d9f13SBarry Smith PetscFunctionBegin; 45409566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4543273d9f13SBarry Smith if (size > 1) { 45449566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45459566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4546273d9f13SBarry Smith } else { 45479566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45489566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4549273d9f13SBarry Smith } 45503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4551273d9f13SBarry Smith } 4552195d93cdSBarry Smith 45530b98dbb4SBarry Smith /*MC 45540b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix 45550b98dbb4SBarry Smith 45560b98dbb4SBarry Smith Synopsis: 45570b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45580b98dbb4SBarry Smith 45590b98dbb4SBarry Smith Not Collective 45600b98dbb4SBarry Smith 45610b98dbb4SBarry Smith Input Parameter: 45620b98dbb4SBarry Smith . A - the `MATMPIAIJ` matrix 45630b98dbb4SBarry Smith 45640b98dbb4SBarry Smith Output Parameters: 45650b98dbb4SBarry Smith + Ad - the diagonal portion of the matrix 45664cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45672ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45680b98dbb4SBarry Smith - ierr - error code 45690b98dbb4SBarry Smith 45700b98dbb4SBarry Smith Level: advanced 45710b98dbb4SBarry Smith 45720b98dbb4SBarry Smith Note: 45730b98dbb4SBarry Smith Use `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45740b98dbb4SBarry Smith 45751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()` 45760b98dbb4SBarry Smith M*/ 45770b98dbb4SBarry Smith 45780b98dbb4SBarry Smith /*MC 45790b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45800b98dbb4SBarry Smith 45810b98dbb4SBarry Smith Synopsis: 45820b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45830b98dbb4SBarry Smith 45840b98dbb4SBarry Smith Not Collective 45850b98dbb4SBarry Smith 45860b98dbb4SBarry Smith Input Parameters: 45870b98dbb4SBarry Smith + A - the `MATMPIAIJ` matrix 45880b98dbb4SBarry Smith . Ad - the diagonal portion of the matrix 45894cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45902ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45910b98dbb4SBarry Smith - ierr - error code 45920b98dbb4SBarry Smith 45930b98dbb4SBarry Smith Level: advanced 45940b98dbb4SBarry Smith 45951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()` 45960b98dbb4SBarry Smith M*/ 45970b98dbb4SBarry Smith 4598127ca0efSMatthew Knepley /*@C 45990ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4600127ca0efSMatthew Knepley 46012ef1f0ffSBarry Smith Not Collective 4602127ca0efSMatthew Knepley 4603127ca0efSMatthew Knepley Input Parameter: 460411a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4605127ca0efSMatthew Knepley 4606127ca0efSMatthew Knepley Output Parameters: 460711a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 460811a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46092ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4610127ca0efSMatthew Knepley 46110ab4885dSBarry Smith Level: intermediate 46120ab4885dSBarry Smith 461311a5261eSBarry Smith Note: 46142ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46152ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46162ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4617127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4618127ca0efSMatthew Knepley 4619fe59aa6dSJacob Faibussowitsch Fortran Notes: 46200ab4885dSBarry Smith `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()` 4621127ca0efSMatthew Knepley 4622fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4623127ca0efSMatthew Knepley @*/ 4624d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4625d71ae5a4SJacob Faibussowitsch { 4626195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 462704cf37c7SBarry Smith PetscBool flg; 4628b1d57f15SBarry Smith 4629195d93cdSBarry Smith PetscFunctionBegin; 46309566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 463128b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 463221e72a00SBarry Smith if (Ad) *Ad = a->A; 463321e72a00SBarry Smith if (Ao) *Ao = a->B; 463421e72a00SBarry Smith if (colmap) *colmap = a->garray; 46353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4636195d93cdSBarry Smith } 4637a2243be0SBarry Smith 4638d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4639d71ae5a4SJacob Faibussowitsch { 4640110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46419b8102ccSHong Zhang PetscInt *indx; 4642110bb6e1SHong Zhang PetscScalar *values; 4643421ddf4dSJunchao Zhang MatType rootType; 46449b8102ccSHong Zhang 46459b8102ccSHong Zhang PetscFunctionBegin; 46469566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4647110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4648110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4649110bb6e1SHong Zhang 465048a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4651a22543b6SHong Zhang /* Check sum(n) = N */ 46521c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 465308401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4654a22543b6SHong Zhang 46559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46569b8102ccSHong Zhang rstart -= m; 46579b8102ccSHong Zhang 4658d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46599b8102ccSHong Zhang for (i = 0; i < m; i++) { 46609566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46619566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46629566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46639b8102ccSHong Zhang } 46649b8102ccSHong Zhang 46659566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46669566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46679566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46689566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46699566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46709566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46719566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46729566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4673d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46749566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46759b8102ccSHong Zhang } 46769b8102ccSHong Zhang 4677110bb6e1SHong Zhang /* numeric phase */ 46789566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46799b8102ccSHong Zhang for (i = 0; i < m; i++) { 46809566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46819b8102ccSHong Zhang Ii = i + rstart; 46829566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46839566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46849b8102ccSHong Zhang } 46859566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46869566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4688c5d6d63eSBarry Smith } 4689c5d6d63eSBarry Smith 4690d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data) 4691d71ae5a4SJacob Faibussowitsch { 46926718818eSStefano Zampini Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data; 469351a7d1a8SHong Zhang 469451a7d1a8SHong Zhang PetscFunctionBegin; 46953ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46969566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46979566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 46989566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 46999566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 47009566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 47019566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 47029566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 47039566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 47049566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47059566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47069566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47079566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47089566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47099566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471151a7d1a8SHong Zhang } 471251a7d1a8SHong Zhang 4713c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4714c6db04a5SJed Brown #include <petscbt.h> 47154ebed01fSBarry Smith 4716d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4717d71ae5a4SJacob Faibussowitsch { 4718ce94432eSBarry Smith MPI_Comm comm; 471955d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4720b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 4721a2ea699eSBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj; 4722b1d57f15SBarry Smith PetscInt proc, m; 4723b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 4724b1d57f15SBarry Smith PetscInt k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4725b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 472655d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 472755d1abb9SHong Zhang MPI_Status *status; 4728fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4729dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 473055d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4731776b82aeSLisandro Dalcin PetscContainer container; 473255d1abb9SHong Zhang 473355d1abb9SHong Zhang PetscFunctionBegin; 47349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47359566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47363c2c1871SHong Zhang 47379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 473955d1abb9SHong Zhang 47409566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 474128b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47429566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4744fff043a9SJunchao Zhang aa = a_a; 4745bf0cc555SLisandro Dalcin 474655d1abb9SHong Zhang bi = merge->bi; 474755d1abb9SHong Zhang bj = merge->bj; 474855d1abb9SHong Zhang buf_ri = merge->buf_ri; 474955d1abb9SHong Zhang buf_rj = merge->buf_rj; 475055d1abb9SHong Zhang 47519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47527a2fc3feSBarry Smith owners = merge->rowmap->range; 475355d1abb9SHong Zhang len_s = merge->len_s; 475455d1abb9SHong Zhang 475555d1abb9SHong Zhang /* send and recv matrix values */ 47569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47579566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 475855d1abb9SHong Zhang 47599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 476055d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 476155d1abb9SHong Zhang if (!len_s[proc]) continue; 476255d1abb9SHong Zhang i = owners[proc]; 47639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 476455d1abb9SHong Zhang k++; 476555d1abb9SHong Zhang } 476655d1abb9SHong Zhang 47679566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47689566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47699566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 477055d1abb9SHong Zhang 47719566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47729566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 477355d1abb9SHong Zhang 477455d1abb9SHong Zhang /* insert mat values of mpimat */ 47759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47769566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 477755d1abb9SHong Zhang 477855d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 477955d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4780f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 478155d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4782a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 478355d1abb9SHong Zhang } 478455d1abb9SHong Zhang 478555d1abb9SHong Zhang /* set values of ba */ 47867a2fc3feSBarry Smith m = merge->rowmap->n; 478755d1abb9SHong Zhang for (i = 0; i < m; i++) { 478855d1abb9SHong Zhang arow = owners[rank] + i; 478955d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 479055d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47919566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 479255d1abb9SHong Zhang 479355d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 479455d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 479555d1abb9SHong Zhang aj = a->j + ai[arow]; 4796fff043a9SJunchao Zhang aa = a_a + ai[arow]; 479755d1abb9SHong Zhang nextaj = 0; 479855d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 479955d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 480055d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 480155d1abb9SHong Zhang } 480255d1abb9SHong Zhang } 480355d1abb9SHong Zhang 480455d1abb9SHong Zhang /* add received vals into ba */ 480555d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 480655d1abb9SHong Zhang /* i-th row */ 480755d1abb9SHong Zhang if (i == *nextrow[k]) { 480855d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4809f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4810f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 481155d1abb9SHong Zhang nextaj = 0; 481255d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 481355d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 481455d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 481555d1abb9SHong Zhang } 481655d1abb9SHong Zhang } 48179371c9d4SSatish Balay nextrow[k]++; 48189371c9d4SSatish Balay nextai[k]++; 481955d1abb9SHong Zhang } 482055d1abb9SHong Zhang } 48219566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 482255d1abb9SHong Zhang } 48239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48249566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48259566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 482655d1abb9SHong Zhang 48279566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48289566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48299566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48309566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48319566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 483355d1abb9SHong Zhang } 483438f152feSBarry Smith 4835d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4836d71ae5a4SJacob Faibussowitsch { 483755a3bba9SHong Zhang Mat B_mpi; 4838c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4839b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4840b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4841d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 4842a2f3521dSMark F. Adams PetscInt len, proc, *dnz, *onz, bs, cbs; 4843c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4844b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 484555d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 484658cb9c82SHong Zhang MPI_Status *status; 48470298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4848be0fcf8dSHong Zhang PetscBT lnkbt; 484951a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4850776b82aeSLisandro Dalcin PetscContainer container; 485102c68681SHong Zhang 4852e5f2cdd8SHong Zhang PetscFunctionBegin; 48539566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48543c2c1871SHong Zhang 485538f152feSBarry Smith /* make sure it is a PETSc comm */ 48569566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 485955d1abb9SHong Zhang 48609566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4862e5f2cdd8SHong Zhang 48636abd8857SHong Zhang /* determine row ownership */ 48649566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48659566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48669566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48679566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48689566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 487155d1abb9SHong Zhang 48727a2fc3feSBarry Smith m = merge->rowmap->n; 48737a2fc3feSBarry Smith owners = merge->rowmap->range; 48746abd8857SHong Zhang 48756abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48763e06a4e6SHong Zhang len_s = merge->len_s; 487751a7d1a8SHong Zhang 48782257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4879c2234fe3SHong Zhang merge->nsend = 0; 4880409913e3SHong Zhang for (proc = 0; proc < size; proc++) { 48812257cef7SHong Zhang len_si[proc] = 0; 48823e06a4e6SHong Zhang if (proc == rank) { 48836abd8857SHong Zhang len_s[proc] = 0; 48843e06a4e6SHong Zhang } else { 488502c68681SHong Zhang len_si[proc] = owners[proc + 1] - owners[proc] + 1; 48863e06a4e6SHong Zhang len_s[proc] = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */ 48873e06a4e6SHong Zhang } 48883e06a4e6SHong Zhang if (len_s[proc]) { 4889c2234fe3SHong Zhang merge->nsend++; 48902257cef7SHong Zhang nrows = 0; 48912257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48922257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48932257cef7SHong Zhang } 48942257cef7SHong Zhang len_si[proc] = 2 * (nrows + 1); 48952257cef7SHong Zhang len += len_si[proc]; 4896409913e3SHong Zhang } 489758cb9c82SHong Zhang } 4898409913e3SHong Zhang 48992257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 49009566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 49019566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4902671beff6SHong Zhang 49033e06a4e6SHong Zhang /* post the Irecv of j-structure */ 49049566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49059566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 490602c68681SHong Zhang 49073e06a4e6SHong Zhang /* post the Isend of j-structure */ 49089566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49093e06a4e6SHong Zhang 49102257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 4911409913e3SHong Zhang if (!len_s[proc]) continue; 491202c68681SHong Zhang i = owners[proc]; 49139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 491451a7d1a8SHong Zhang k++; 491551a7d1a8SHong Zhang } 491651a7d1a8SHong Zhang 49173e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49189566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49199566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 492002c68681SHong Zhang 492102c68681SHong Zhang /* send and recv i-structure */ 49229566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49239566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 492402c68681SHong Zhang 49259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49263e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49272257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 492802c68681SHong Zhang if (!len_s[proc]) continue; 49293e06a4e6SHong Zhang /* form outgoing message for i-structure: 49303e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49313e06a4e6SHong Zhang [1:nrows]: row index (global) 49323e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49333e06a4e6SHong Zhang */ 49342257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49353e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49363e06a4e6SHong Zhang buf_si[0] = nrows; 49373e06a4e6SHong Zhang buf_si_i[0] = 0; 49383e06a4e6SHong Zhang nrows = 0; 49393e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49403e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49413e06a4e6SHong Zhang if (anzi) { 49423e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49433e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49443e06a4e6SHong Zhang nrows++; 49453e06a4e6SHong Zhang } 49463e06a4e6SHong Zhang } 49479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 494802c68681SHong Zhang k++; 49492257cef7SHong Zhang buf_si += len_si[proc]; 495002c68681SHong Zhang } 49512257cef7SHong Zhang 49529566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49539566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 495402c68681SHong Zhang 49559566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 495648a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49573e06a4e6SHong Zhang 49589566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49599566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49609566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49619566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49629566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49639566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49649566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 496558cb9c82SHong Zhang 4966bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 496758cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 496958cb9c82SHong Zhang bi[0] = 0; 497058cb9c82SHong Zhang 4971be0fcf8dSHong Zhang /* create and initialize a linked list */ 4972be0fcf8dSHong Zhang nlnk = N + 1; 49739566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 497458cb9c82SHong Zhang 4975bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4976bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49779566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49782205254eSKarl Rupp 497958cb9c82SHong Zhang current_space = free_space; 498058cb9c82SHong Zhang 4981bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49829566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49831d79065fSBarry Smith 49843e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49852257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49863e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49873e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4988a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49893e06a4e6SHong Zhang } 49902257cef7SHong Zhang 4991d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4992bcc1bcd5SHong Zhang len = 0; 499358cb9c82SHong Zhang for (i = 0; i < m; i++) { 499458cb9c82SHong Zhang bnzi = 0; 499558cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 499658cb9c82SHong Zhang arow = owners[rank] + i; 499758cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 499858cb9c82SHong Zhang aj = a->j + ai[arow]; 49999566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 500058cb9c82SHong Zhang bnzi += nlnk; 500158cb9c82SHong Zhang /* add received col data into lnk */ 500251a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 500355d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 50043e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50053e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50069566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50073e06a4e6SHong Zhang bnzi += nlnk; 50089371c9d4SSatish Balay nextrow[k]++; 50099371c9d4SSatish Balay nextai[k]++; 50103e06a4e6SHong Zhang } 501158cb9c82SHong Zhang } 5012bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 501358cb9c82SHong Zhang 501458cb9c82SHong Zhang /* if free space is not available, make more free space */ 501548a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 501658cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50179566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50189566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5019bcc1bcd5SHong Zhang 502058cb9c82SHong Zhang current_space->array += bnzi; 502158cb9c82SHong Zhang current_space->local_used += bnzi; 502258cb9c82SHong Zhang current_space->local_remaining -= bnzi; 502358cb9c82SHong Zhang 502458cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 502558cb9c82SHong Zhang } 5026bcc1bcd5SHong Zhang 50279566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5028bcc1bcd5SHong Zhang 50299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50309566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50319566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5032409913e3SHong Zhang 5033bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50349566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50359566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 503654b84b50SHong Zhang if (n == PETSC_DECIDE) { 50379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 503854b84b50SHong Zhang } else { 50399566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 504054b84b50SHong Zhang } 50419566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50429566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50439566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5044d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50459566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 504658cb9c82SHong Zhang 504790431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50486abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5049affca5deSHong Zhang merge->bi = bi; 5050affca5deSHong Zhang merge->bj = bj; 505102c68681SHong Zhang merge->buf_ri = buf_ri; 505202c68681SHong Zhang merge->buf_rj = buf_rj; 50530298fd71SBarry Smith merge->coi = NULL; 50540298fd71SBarry Smith merge->coj = NULL; 50550298fd71SBarry Smith merge->owners_co = NULL; 5056affca5deSHong Zhang 50579566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5058bf0cc555SLisandro Dalcin 5059affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50609566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50619566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 50629566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50639566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50649566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5065affca5deSHong Zhang *mpimat = B_mpi; 506638f152feSBarry Smith 50679566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5069e5f2cdd8SHong Zhang } 507025616d81SHong Zhang 5071cc4c1da9SBarry Smith /*@ 507211a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5073d4036a1aSHong Zhang matrices from each processor 5074d4036a1aSHong Zhang 5075d083f849SBarry Smith Collective 5076d4036a1aSHong Zhang 5077d4036a1aSHong Zhang Input Parameters: 5078d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5079d4036a1aSHong Zhang . seqmat - the input sequential matrices 508011a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 508111a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 508211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5083d4036a1aSHong Zhang 5084d4036a1aSHong Zhang Output Parameter: 5085d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5086d4036a1aSHong Zhang 5087d4036a1aSHong Zhang Level: advanced 5088d4036a1aSHong Zhang 508911a5261eSBarry Smith Note: 5090d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5091d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5092b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 50932ef1f0ffSBarry Smith 50941cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5095d4036a1aSHong Zhang @*/ 5096d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5097d71ae5a4SJacob Faibussowitsch { 50987e63b356SHong Zhang PetscMPIInt size; 509955d1abb9SHong Zhang 510055d1abb9SHong Zhang PetscFunctionBegin; 51019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 51027e63b356SHong Zhang if (size == 1) { 51039566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 51047e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51059566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51067e63b356SHong Zhang } else { 51079566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51087e63b356SHong Zhang } 51099566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51117e63b356SHong Zhang } 51129566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 511348a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51149566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51159566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 511755d1abb9SHong Zhang } 51184ebed01fSBarry Smith 5119bc08b0f1SBarry Smith /*@ 51202920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51218a9c020eSBarry Smith 51228a9c020eSBarry Smith Not Collective 51238a9c020eSBarry Smith 51242fe279fdSBarry Smith Input Parameter: 512520f4b53cSBarry Smith . A - the matrix 51268a9c020eSBarry Smith 51278a9c020eSBarry Smith Output Parameter: 51288a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51298a9c020eSBarry Smith 51308a9c020eSBarry Smith Level: developer 51318a9c020eSBarry Smith 51328a9c020eSBarry Smith Notes: 51332920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51342920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51352920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51362920cce0SJacob Faibussowitsch 513711a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51388a9c020eSBarry Smith 51392920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51402920cce0SJacob Faibussowitsch 514111a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51428a9c020eSBarry Smith 51431cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51448a9c020eSBarry Smith @*/ 5145d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5146d71ae5a4SJacob Faibussowitsch { 51478a9c020eSBarry Smith PetscBool mpi; 51488a9c020eSBarry Smith 51498a9c020eSBarry Smith PetscFunctionBegin; 51508a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51518a9c020eSBarry Smith if (mpi) { 51528a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51538a9c020eSBarry Smith } else { 51548a9c020eSBarry Smith *A_loc = A; 51558a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51568a9c020eSBarry Smith } 51573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51588a9c020eSBarry Smith } 51598a9c020eSBarry Smith 51608a9c020eSBarry Smith /*@ 51612920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 516225616d81SHong Zhang 516332fba14fSHong Zhang Not Collective 516425616d81SHong Zhang 516525616d81SHong Zhang Input Parameters: 516625616d81SHong Zhang + A - the matrix 516711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 516825616d81SHong Zhang 516925616d81SHong Zhang Output Parameter: 517025616d81SHong Zhang . A_loc - the local sequential matrix generated 517125616d81SHong Zhang 517225616d81SHong Zhang Level: developer 517325616d81SHong Zhang 517477c65a98SStefano Zampini Notes: 51752920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51762920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51772920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51782920cce0SJacob Faibussowitsch 517911a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51808a9c020eSBarry Smith 51812920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51822920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51832920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51842920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 518577c65a98SStefano Zampini 51861cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 518725616d81SHong Zhang @*/ 5188d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5189d71ae5a4SJacob Faibussowitsch { 519001b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5191b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5192b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5193ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5194ce496241SStefano Zampini PetscScalar *ca, *cam; 519577c65a98SStefano Zampini PetscMPIInt size; 5196d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51975a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 51988661ff28SBarry Smith PetscBool match; 519925616d81SHong Zhang 520025616d81SHong Zhang PetscFunctionBegin; 52019566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 520228b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 52039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 520477c65a98SStefano Zampini if (size == 1) { 520577c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52069566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 520777c65a98SStefano Zampini *A_loc = mpimat->A; 520877c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52099566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 521077c65a98SStefano Zampini } 52113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 521277c65a98SStefano Zampini } 521370a9ba44SHong Zhang 52149566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5215f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5216f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 52179371c9d4SSatish Balay ai = a->i; 52189371c9d4SSatish Balay aj = a->j; 52199371c9d4SSatish Balay bi = b->i; 52209371c9d4SSatish Balay bj = b->j; 52219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5223ce496241SStefano Zampini aa = aav; 5224ce496241SStefano Zampini ba = bav; 522501b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5227dea91ad1SHong Zhang ci[0] = 0; 5228ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5231dea91ad1SHong Zhang k = 0; 523201b7ae99SHong Zhang for (i = 0; i < am; i++) { 52335a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52345a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 523501b7ae99SHong Zhang /* off-diagonal portion of A */ 52365a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52375a7d977cSHong Zhang col = cmap[*bj]; 52385a7d977cSHong Zhang if (col >= cstart) break; 52399371c9d4SSatish Balay cj[k] = col; 52409371c9d4SSatish Balay bj++; 52415a7d977cSHong Zhang ca[k++] = *ba++; 52425a7d977cSHong Zhang } 52435a7d977cSHong Zhang /* diagonal portion of A */ 52445a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52455a7d977cSHong Zhang cj[k] = cstart + *aj++; 52465a7d977cSHong Zhang ca[k++] = *aa++; 52475a7d977cSHong Zhang } 52485a7d977cSHong Zhang /* off-diagonal portion of A */ 52495a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52505a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52515a7d977cSHong Zhang ca[k++] = *ba++; 52525a7d977cSHong Zhang } 525325616d81SHong Zhang } 5254dea91ad1SHong Zhang /* put together the new matrix */ 52559566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5256dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5257dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5258dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5259e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5260e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5261dea91ad1SHong Zhang mat->nonew = 0; 52625a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52635a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5264fff043a9SJunchao Zhang ci = mat->i; 5265fff043a9SJunchao Zhang cj = mat->j; 52669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52675a7d977cSHong Zhang for (i = 0; i < am; i++) { 52685a7d977cSHong Zhang /* off-diagonal portion of A */ 52695a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52705a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52715a7d977cSHong Zhang col = cmap[*bj]; 52725a7d977cSHong Zhang if (col >= cstart) break; 52739371c9d4SSatish Balay *cam++ = *ba++; 52749371c9d4SSatish Balay bj++; 52755a7d977cSHong Zhang } 52765a7d977cSHong Zhang /* diagonal portion of A */ 5277ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5278a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52795a7d977cSHong Zhang /* off-diagonal portion of A */ 5280f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52819371c9d4SSatish Balay *cam++ = *ba++; 52829371c9d4SSatish Balay bj++; 5283f33d1a9aSHong Zhang } 52845a7d977cSHong Zhang } 52859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 528698921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52899566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 529125616d81SHong Zhang } 529225616d81SHong Zhang 5293ed502f03SStefano Zampini /*@ 529411a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52954cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5296ed502f03SStefano Zampini 5297ed502f03SStefano Zampini Not Collective 5298ed502f03SStefano Zampini 5299ed502f03SStefano Zampini Input Parameters: 5300ed502f03SStefano Zampini + A - the matrix 530111a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5302ed502f03SStefano Zampini 5303d8d19677SJose E. Roman Output Parameters: 53042ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5305ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5306ed502f03SStefano Zampini 5307ed502f03SStefano Zampini Level: developer 5308ed502f03SStefano Zampini 530911a5261eSBarry Smith Note: 53102ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53114cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5312ed502f03SStefano Zampini 53131cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5314ed502f03SStefano Zampini @*/ 5315d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5316d71ae5a4SJacob Faibussowitsch { 5317ed502f03SStefano Zampini Mat Ao, Ad; 5318ed502f03SStefano Zampini const PetscInt *cmap; 5319ed502f03SStefano Zampini PetscMPIInt size; 5320ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5321ed502f03SStefano Zampini 5322ed502f03SStefano Zampini PetscFunctionBegin; 53239566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5325ed502f03SStefano Zampini if (size == 1) { 5326ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53279566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5328ed502f03SStefano Zampini *A_loc = Ad; 5329ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53309566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5331ed502f03SStefano Zampini } 53329566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5334ed502f03SStefano Zampini } 53359566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53369566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5337ed502f03SStefano Zampini if (f) { 53389566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5339ed502f03SStefano Zampini } else { 5340ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5341ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5342ed502f03SStefano Zampini Mat_SeqAIJ *c; 5343ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5344ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5345ed502f03SStefano Zampini PetscInt *ci, *cj; 5346ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5347ed502f03SStefano Zampini PetscScalar *ca; 5348ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5349ed502f03SStefano Zampini 53509566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53519566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5354ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5355ed502f03SStefano Zampini PetscInt k; 53569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5359ed502f03SStefano Zampini ci[0] = 0; 5360ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5361ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5362ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5363ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5364ed502f03SStefano Zampini /* diagonal portion of A */ 5365ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5366ed502f03SStefano Zampini cj[k] = *aj++; 5367ed502f03SStefano Zampini ca[k] = *aa++; 5368ed502f03SStefano Zampini } 5369ed502f03SStefano Zampini /* off-diagonal portion of A */ 5370ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5371ed502f03SStefano Zampini cj[k] = dn + *bj++; 5372ed502f03SStefano Zampini ca[k] = *ba++; 5373ed502f03SStefano Zampini } 5374ed502f03SStefano Zampini } 5375ed502f03SStefano Zampini /* put together the new matrix */ 53769566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5377ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5378ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5379ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5380ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5381ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5382ed502f03SStefano Zampini c->nonew = 0; 53839566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5384ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5386ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5387ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5388ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5389ed502f03SStefano Zampini /* diagonal portion of A */ 5390ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5391ed502f03SStefano Zampini /* off-diagonal portion of A */ 5392ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5393ed502f03SStefano Zampini } 53949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 539598921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5398ed502f03SStefano Zampini if (glob) { 5399ed502f03SStefano Zampini PetscInt cst, *gidx; 5400ed502f03SStefano Zampini 54019566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 54029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5403ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5404ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54059566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5406ed502f03SStefano Zampini } 5407ed502f03SStefano Zampini } 54089566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5410ed502f03SStefano Zampini } 5411ed502f03SStefano Zampini 541232fba14fSHong Zhang /*@C 541311a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 541432fba14fSHong Zhang 541532fba14fSHong Zhang Not Collective 541632fba14fSHong Zhang 541732fba14fSHong Zhang Input Parameters: 541832fba14fSHong Zhang + A - the matrix 541911a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 542020f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 542120f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 542232fba14fSHong Zhang 542332fba14fSHong Zhang Output Parameter: 542432fba14fSHong Zhang . A_loc - the local sequential matrix generated 542532fba14fSHong Zhang 542632fba14fSHong Zhang Level: developer 542732fba14fSHong Zhang 54281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 542932fba14fSHong Zhang @*/ 5430d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5431d71ae5a4SJacob Faibussowitsch { 543232fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 543332fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 543432fba14fSHong Zhang IS isrowa, iscola; 543532fba14fSHong Zhang Mat *aloc; 54364a2b5492SBarry Smith PetscBool match; 543732fba14fSHong Zhang 543832fba14fSHong Zhang PetscFunctionBegin; 54399566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 544028b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54419566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 544232fba14fSHong Zhang if (!row) { 54439371c9d4SSatish Balay start = A->rmap->rstart; 54449371c9d4SSatish Balay end = A->rmap->rend; 54459566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 544632fba14fSHong Zhang } else { 544732fba14fSHong Zhang isrowa = *row; 544832fba14fSHong Zhang } 544932fba14fSHong Zhang if (!col) { 5450d0f46423SBarry Smith start = A->cmap->rstart; 545132fba14fSHong Zhang cmap = a->garray; 5452d0f46423SBarry Smith nzA = a->A->cmap->n; 5453d0f46423SBarry Smith nzB = a->B->cmap->n; 54549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 545532fba14fSHong Zhang ncols = 0; 545632fba14fSHong Zhang for (i = 0; i < nzB; i++) { 545732fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 545832fba14fSHong Zhang else break; 545932fba14fSHong Zhang } 546032fba14fSHong Zhang imark = i; 546132fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 546232fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54639566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 546432fba14fSHong Zhang } else { 546532fba14fSHong Zhang iscola = *col; 546632fba14fSHong Zhang } 546732fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 546932fba14fSHong Zhang aloc[0] = *A_loc; 547032fba14fSHong Zhang } 54719566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5472109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54739566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5474109e0772SStefano Zampini } 547532fba14fSHong Zhang *A_loc = aloc[0]; 54769566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 547748a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 547848a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54799566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548132fba14fSHong Zhang } 548232fba14fSHong Zhang 54835c65b9ecSFande Kong /* 54845c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54855c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54865c65b9ecSFande Kong * on a global size. 54875c65b9ecSFande Kong * */ 5488ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5489d71ae5a4SJacob Faibussowitsch { 54905c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5491f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5492131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5493131c27b5Sprj- PetscMPIInt owner; 54945c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54955c65b9ecSFande Kong const PetscInt *lrowindices; 54965c65b9ecSFande Kong PetscSF sf, osf; 54975c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 54985c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 54995c65b9ecSFande Kong MPI_Comm comm; 55005c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5501fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 55025c65b9ecSFande Kong 55035c65b9ecSFande Kong PetscFunctionBegin; 55049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55055c65b9ecSFande Kong /* plocalsize is the number of roots 55065c65b9ecSFande Kong * nrows is the number of leaves 55075c65b9ecSFande Kong * */ 55089566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55099566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55109566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55119566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55125c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55135c65b9ecSFande Kong /* Find a remote index and an owner for a row 55145c65b9ecSFande Kong * The row could be local or remote 55155c65b9ecSFande Kong * */ 551634bcad68SFande Kong owner = 0; 551734bcad68SFande Kong lidx = 0; 55189566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55195c65b9ecSFande Kong iremote[i].index = lidx; 55205c65b9ecSFande Kong iremote[i].rank = owner; 55215c65b9ecSFande Kong } 55225c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55239566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5524f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55255c65b9ecSFande Kong * offsets 55265c65b9ecSFande Kong * */ 55279566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55289566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55299566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5530bc8e477aSFande Kong 55319566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55329566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55339566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55345c65b9ecSFande Kong roffsets[0] = 0; 55355c65b9ecSFande Kong roffsets[1] = 0; 55365c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55374cf0e950SBarry Smith /* diagonal */ 55385c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55394cf0e950SBarry Smith /* off-diagonal */ 55405c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55415c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55425c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55435c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55445c65b9ecSFande Kong } 55459566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55469566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55475c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55489566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55509566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55519566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55529566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55539566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55549566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55555c65b9ecSFande Kong dntotalcols = 0; 55565c65b9ecSFande Kong ontotalcols = 0; 5557bc8e477aSFande Kong ncol = 0; 55585c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55595c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5560bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55614cf0e950SBarry Smith /* diagonal */ 55625c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55634cf0e950SBarry Smith /* off-diagonal */ 55645c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55655c65b9ecSFande Kong } 55665c65b9ecSFande Kong /* We do not need to figure the right number of columns 55675c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55685c65b9ecSFande Kong * */ 55699566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55709566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55719566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55725c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55734cf0e950SBarry Smith /* diagonal */ 55749566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55754cf0e950SBarry Smith /* off-diagonal */ 55769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55774cf0e950SBarry Smith /* diagonal */ 55789566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55794cf0e950SBarry Smith /* off-diagonal */ 55809566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55815c65b9ecSFande Kong dntotalcols = 0; 55825c65b9ecSFande Kong ontotalcols = 0; 55835c65b9ecSFande Kong ntotalcols = 0; 55845c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 558534bcad68SFande Kong owner = 0; 55869566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55875c65b9ecSFande Kong /* Set iremote for diag matrix */ 55885c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55895c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55905c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55915c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55925c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55935c65b9ecSFande Kong } 55944cf0e950SBarry Smith /* off-diagonal */ 55955c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55965c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55975c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 55985c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 55995c65b9ecSFande Kong } 56005c65b9ecSFande Kong } 56019566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 56029566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 56039566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 56049566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56055c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56065c65b9ecSFande Kong * Diag matrix 56075c65b9ecSFande Kong * */ 56089566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56099566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56109566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56115c65b9ecSFande Kong 56129566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56134cf0e950SBarry Smith /* off-diagonal */ 56149566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56159566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56169566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56194cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56209566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56229566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56235c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56245c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56259566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56265c65b9ecSFande Kong /* We want P_oth store global indices */ 56279566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56285c65b9ecSFande Kong /* Use memory scalable approach */ 56299566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56309566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56319566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56329566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56335c65b9ecSFande Kong /* Convert back to local indices */ 56345c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56359566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56365c65b9ecSFande Kong nout = 0; 56379566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 563808401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56399566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56405c65b9ecSFande Kong /* Exchange values */ 56419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56429566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56455c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56465c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56479566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56489566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56495c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56509566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56519566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56529566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56539566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56555c65b9ecSFande Kong } 56565c65b9ecSFande Kong 56575c65b9ecSFande Kong /* 56585c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56595c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56605c65b9ecSFande Kong * */ 5661d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5662d71ae5a4SJacob Faibussowitsch { 56635c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5664bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5665bc8e477aSFande Kong IS rows, map; 5666bc8e477aSFande Kong PetscHMapI hamp; 5667bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56685c65b9ecSFande Kong MPI_Comm comm; 56695c65b9ecSFande Kong PetscSF sf, osf; 5670bc8e477aSFande Kong PetscBool has; 56715c65b9ecSFande Kong 56725c65b9ecSFande Kong PetscFunctionBegin; 56739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56749566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56755c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56765c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56775c65b9ecSFande Kong * */ 56785c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56795c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5680eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56819566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5682bc8e477aSFande Kong count = 0; 5683bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5684bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5685bc8e477aSFande Kong key = a->garray[i] / dof; 56869566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5687bc8e477aSFande Kong if (!has) { 5688bc8e477aSFande Kong mapping[i] = count; 56899566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5690bc8e477aSFande Kong } else { 5691bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5692bc8e477aSFande Kong mapping[i] = count - 1; 56935c65b9ecSFande Kong } 5694bc8e477aSFande Kong } 56959566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56969566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5697eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 56989566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 56995c65b9ecSFande Kong off = 0; 57009566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 57019566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 57029566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 57039566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 57045c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57059566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57069566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57079566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57099566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57105c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57115c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 571235cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5713fff043a9SJunchao Zhang */ 5714fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5715fff043a9SJunchao Zhang 57169566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57179566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 571808401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57195c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57205c65b9ecSFande Kong /* Update values in place */ 57219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57249566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57259566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57269566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57296718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57309566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57325c65b9ecSFande Kong } 57335c65b9ecSFande Kong 573425616d81SHong Zhang /*@C 573520f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 573625616d81SHong Zhang 5737c3339decSBarry Smith Collective 573825616d81SHong Zhang 573925616d81SHong Zhang Input Parameters: 574011a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 574111a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 574211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 574325616d81SHong Zhang 5744f1a722f8SMatthew G. Knepley Output Parameters: 574527430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 574627430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5747f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 574825616d81SHong Zhang 574925616d81SHong Zhang Level: developer 575025616d81SHong Zhang 575120f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 575225616d81SHong Zhang @*/ 5753d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5754d71ae5a4SJacob Faibussowitsch { 5755899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5756b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 575725616d81SHong Zhang IS isrowb, iscolb; 57580298fd71SBarry Smith Mat *bseq = NULL; 575925616d81SHong Zhang 576025616d81SHong Zhang PetscFunctionBegin; 576120f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 576220f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57639566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 576425616d81SHong Zhang 576525616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5766d0f46423SBarry Smith start = A->cmap->rstart; 576725616d81SHong Zhang cmap = a->garray; 5768d0f46423SBarry Smith nzA = a->A->cmap->n; 5769d0f46423SBarry Smith nzB = a->B->cmap->n; 57709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 577125616d81SHong Zhang ncols = 0; 57720390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 577325616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 577425616d81SHong Zhang else break; 577525616d81SHong Zhang } 577625616d81SHong Zhang imark = i; 57770390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57780390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57799566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57809566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 578125616d81SHong Zhang } else { 578208401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57839371c9d4SSatish Balay isrowb = *rowb; 57849371c9d4SSatish Balay iscolb = *colb; 57859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 578625616d81SHong Zhang bseq[0] = *B_seq; 578725616d81SHong Zhang } 57889566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 578925616d81SHong Zhang *B_seq = bseq[0]; 57909566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 579125616d81SHong Zhang if (!rowb) { 57929566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 579325616d81SHong Zhang } else { 579425616d81SHong Zhang *rowb = isrowb; 579525616d81SHong Zhang } 579625616d81SHong Zhang if (!colb) { 57979566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 579825616d81SHong Zhang } else { 579925616d81SHong Zhang *colb = iscolb; 580025616d81SHong Zhang } 58019566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 58023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 580325616d81SHong Zhang } 5804429d309bSHong Zhang 5805f8487c73SHong Zhang /* 580627430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 580701b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5808429d309bSHong Zhang 5809c3339decSBarry Smith Collective 5810429d309bSHong Zhang 5811429d309bSHong Zhang Input Parameters: 581227430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 581327430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5814429d309bSHong Zhang 5815429d309bSHong Zhang Output Parameter: 58160298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58170298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58180298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5819598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5820429d309bSHong Zhang 582111a5261eSBarry Smith Developer Note: 582211a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58236eb45d04SBarry Smith for this matrix. This is not desirable.. 58246eb45d04SBarry Smith 5825429d309bSHong Zhang Level: developer 5826429d309bSHong Zhang 5827f8487c73SHong Zhang */ 5828d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5829d71ae5a4SJacob Faibussowitsch { 5830899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 583187025532SHong Zhang Mat_SeqAIJ *b_oth; 58324b8d542aSHong Zhang VecScatter ctx; 5833ce94432eSBarry Smith MPI_Comm comm; 58343515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58353515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5836277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 5837f4259b30SLisandro Dalcin PetscInt i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len; 5838277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5839ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5840ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5841429d309bSHong Zhang 5842429d309bSHong Zhang PetscFunctionBegin; 58439566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5845a7c7454dSHong Zhang 584620f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 584720f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58489566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5850a6b2eed2SHong Zhang 5851ec07b8f8SHong Zhang if (size == 1) { 5852ec07b8f8SHong Zhang startsj_s = NULL; 5853ec07b8f8SHong Zhang bufa_ptr = NULL; 585452f7967eSHong Zhang *B_oth = NULL; 58553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5856ec07b8f8SHong Zhang } 5857ec07b8f8SHong Zhang 5858fa83eaafSHong Zhang ctx = a->Mvctx; 58594b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58604b8d542aSHong Zhang 58619566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58623515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58639566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58649566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5866ddea5d60SJunchao Zhang rwaits = reqs; 58678e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5868429d309bSHong Zhang 5869b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5870429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5871a6b2eed2SHong Zhang /* i-array */ 5872a6b2eed2SHong Zhang /* post receives */ 58739566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5874a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 587574268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5876e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5878429d309bSHong Zhang } 5879a6b2eed2SHong Zhang 5880a6b2eed2SHong Zhang /* pack the outgoing message */ 58819566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58822205254eSKarl Rupp 58832205254eSKarl Rupp sstartsj[0] = 0; 58842205254eSKarl Rupp rstartsj[0] = 0; 5885a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58863515ee7fSJunchao Zhang if (nsends) { 58873515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58893515ee7fSJunchao Zhang } 5890a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58913515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5892e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 589387025532SHong Zhang for (j = 0; j < nrows; j++) { 5894d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5895e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 58969566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 58972205254eSKarl Rupp 5898e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 58992205254eSKarl Rupp 5900e42f35eeSHong Zhang len += ncols; 59019566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5902e42f35eeSHong Zhang } 5903a6b2eed2SHong Zhang k++; 5904429d309bSHong Zhang } 59059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59062205254eSKarl Rupp 5907dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5908429d309bSHong Zhang } 590987025532SHong Zhang /* recvs and sends of i-array are completed */ 59109566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59119566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5912e42f35eeSHong Zhang 5913a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5916a6b2eed2SHong Zhang 591787025532SHong Zhang /* create i-array of B_oth */ 59189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59192205254eSKarl Rupp 592087025532SHong Zhang b_othi[0] = 0; 5921a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5922a6b2eed2SHong Zhang k = 0; 5923a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59243515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59253515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 592687025532SHong Zhang for (j = 0; j < nrows; j++) { 592787025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59289566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5929f91af8c7SBarry Smith k++; 5930a6b2eed2SHong Zhang } 5931dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5932a6b2eed2SHong Zhang } 59339566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5934a6b2eed2SHong Zhang 59356aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5938a6b2eed2SHong Zhang 593987025532SHong Zhang /* j-array */ 5940a6b2eed2SHong Zhang /* post receives of j-array */ 5941a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 594287025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5944a6b2eed2SHong Zhang } 5945e42f35eeSHong Zhang 5946e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59473515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5948a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5949e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5950a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 595187025532SHong Zhang for (j = 0; j < nrows; j++) { 5952d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5953e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59549566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5955ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59569566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5957e42f35eeSHong Zhang } 595887025532SHong Zhang } 59599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 596087025532SHong Zhang } 596187025532SHong Zhang 596287025532SHong Zhang /* recvs and sends of j-array are completed */ 59639566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 596487025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5965b7f45c76SHong Zhang sstartsj = *startsj_s; 59661d79065fSBarry Smith rstartsj = *startsj_r; 596787025532SHong Zhang bufa = *bufa_ptr; 596887025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 59699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5970ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 597187025532SHong Zhang 597287025532SHong Zhang /* a-array */ 597387025532SHong Zhang /* post receives of a-array */ 597487025532SHong Zhang for (i = 0; i < nrecvs; i++) { 597587025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 597787025532SHong Zhang } 5978e42f35eeSHong Zhang 5979e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59803515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 598187025532SHong Zhang for (i = 0; i < nsends; i++) { 5982e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 598387025532SHong Zhang bufA = bufa + sstartsj[i]; 598487025532SHong Zhang for (j = 0; j < nrows; j++) { 5985d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5986e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59879566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5988ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59899566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5990e42f35eeSHong Zhang } 5991a6b2eed2SHong Zhang } 59929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5993a6b2eed2SHong Zhang } 599487025532SHong Zhang /* recvs and sends of a-array are completed */ 59959566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59969566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 5997a6b2eed2SHong Zhang 599887025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5999a6b2eed2SHong Zhang /* put together the new matrix */ 60009566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 6001a6b2eed2SHong Zhang 6002a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6003a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 600487025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6005e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6006e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 600787025532SHong Zhang b_oth->nonew = 0; 6008a6b2eed2SHong Zhang 60099566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6010b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60119566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60129566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6013dea91ad1SHong Zhang } else { 6014b7f45c76SHong Zhang *startsj_s = sstartsj; 60151d79065fSBarry Smith *startsj_r = rstartsj; 601687025532SHong Zhang *bufa_ptr = bufa; 601787025532SHong Zhang } 6018fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6020dea91ad1SHong Zhang } 60213515ee7fSJunchao Zhang 60229566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60239566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60249566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6026429d309bSHong Zhang } 6027ccd8e176SBarry Smith 6028cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6029cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6030ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60319779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6032a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6033191b95cbSRichard Tran Mills #endif 6034ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6035cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60365d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6037cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60385d7652ecSHong Zhang #endif 6039d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6040d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6041d24d4204SJose E. Roman #endif 604263c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 604363c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 604463c07aadSStefano Zampini #endif 60453338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60463338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60473338378cSStefano Zampini #endif 6048d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6049d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6050d5e393b6SSuyash Tandon #endif 60513d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60523d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60533d0639e7SStefano Zampini #endif 6054d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60554222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60564222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 605717667f90SBarry Smith 6058fc4dec0aSBarry Smith /* 6059fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6060fc4dec0aSBarry Smith 6061fc4dec0aSBarry Smith n p p 60622da392ccSBarry Smith [ ] [ ] [ ] 60632da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60642da392ccSBarry Smith [ ] [ ] [ ] 6065fc4dec0aSBarry Smith 6066fc4dec0aSBarry Smith */ 6067d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6068d71ae5a4SJacob Faibussowitsch { 6069fc4dec0aSBarry Smith Mat At, Bt, Ct; 6070fc4dec0aSBarry Smith 6071fc4dec0aSBarry Smith PetscFunctionBegin; 60729566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60739566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 60749566063dSJacob Faibussowitsch PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct)); 60759566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60769566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60777fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60789566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60799566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6081fc4dec0aSBarry Smith } 6082fc4dec0aSBarry Smith 6083d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6084d71ae5a4SJacob Faibussowitsch { 60856718818eSStefano Zampini PetscBool cisdense; 6086fc4dec0aSBarry Smith 6087fc4dec0aSBarry Smith PetscFunctionBegin; 608808401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60899566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60909566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6091d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 609248a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60939566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6094f75ecaa4SHong Zhang 60954222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 60963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6097fc4dec0aSBarry Smith } 6098fc4dec0aSBarry Smith 6099d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6100d71ae5a4SJacob Faibussowitsch { 61014222ddf1SHong Zhang Mat_Product *product = C->product; 61024222ddf1SHong Zhang Mat A = product->A, B = product->B; 6103fc4dec0aSBarry Smith 6104fc4dec0aSBarry Smith PetscFunctionBegin; 610520f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 610620f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61074222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61084222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6110fc4dec0aSBarry Smith } 6111fc4dec0aSBarry Smith 6112d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6113d71ae5a4SJacob Faibussowitsch { 61144222ddf1SHong Zhang Mat_Product *product = C->product; 61154222ddf1SHong Zhang 61164222ddf1SHong Zhang PetscFunctionBegin; 611748a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61194222ddf1SHong Zhang } 6120394ed5ebSJunchao Zhang 612127430b45SBarry Smith /* 612227430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6123394ed5ebSJunchao Zhang 6124394ed5ebSJunchao Zhang Input Parameters: 6125394ed5ebSJunchao Zhang 6126651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6127651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6128394ed5ebSJunchao Zhang 6129158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6130394ed5ebSJunchao Zhang 6131394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6132394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6133394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6134394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6135394ed5ebSJunchao Zhang 6136394ed5ebSJunchao Zhang Similar for Set2. 6137394ed5ebSJunchao Zhang 6138394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6139394ed5ebSJunchao Zhang 6140158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6141394ed5ebSJunchao Zhang 6142394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6143394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6144394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6145394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6146394ed5ebSJunchao Zhang */ 6147d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6148d71ae5a4SJacob Faibussowitsch { 6149394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6150394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6151394ed5ebSJunchao Zhang 6152394ed5ebSJunchao Zhang PetscFunctionBegin; 61539566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6154394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6155394ed5ebSJunchao Zhang i[0] = 0; 6156394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6157394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6158394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6159394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6160394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6161394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6162394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6163394ed5ebSJunchao Zhang j[t] = j1[b1]; 6164394ed5ebSJunchao Zhang imap1[t1] = t; 6165394ed5ebSJunchao Zhang imap2[t2] = t; 6166394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6167394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61689371c9d4SSatish Balay t1++; 61699371c9d4SSatish Balay t2++; 61709371c9d4SSatish Balay t++; 6171394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6172394ed5ebSJunchao Zhang j[t] = j1[b1]; 6173394ed5ebSJunchao Zhang imap1[t1] = t; 6174394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61759371c9d4SSatish Balay t1++; 61769371c9d4SSatish Balay t++; 6177394ed5ebSJunchao Zhang } else { 6178394ed5ebSJunchao Zhang j[t] = j2[b2]; 6179394ed5ebSJunchao Zhang imap2[t2] = t; 6180394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61819371c9d4SSatish Balay t2++; 61829371c9d4SSatish Balay t++; 6183394ed5ebSJunchao Zhang } 6184394ed5ebSJunchao Zhang } 6185394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6186394ed5ebSJunchao Zhang while (b1 < e1) { 6187394ed5ebSJunchao Zhang j[t] = j1[b1]; 6188394ed5ebSJunchao Zhang imap1[t1] = t; 6189394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61909371c9d4SSatish Balay t1++; 61919371c9d4SSatish Balay t++; 6192394ed5ebSJunchao Zhang } 6193394ed5ebSJunchao Zhang while (b2 < e2) { 6194394ed5ebSJunchao Zhang j[t] = j2[b2]; 6195394ed5ebSJunchao Zhang imap2[t2] = t; 6196394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61979371c9d4SSatish Balay t2++; 61989371c9d4SSatish Balay t++; 6199394ed5ebSJunchao Zhang } 6200394ed5ebSJunchao Zhang i[r + 1] = t; 6201394ed5ebSJunchao Zhang } 62023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6203394ed5ebSJunchao Zhang } 6204394ed5ebSJunchao Zhang 620527430b45SBarry Smith /* 620627430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6207394ed5ebSJunchao Zhang 6208394ed5ebSJunchao Zhang Input Parameters: 6209394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6210394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6211394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6212394ed5ebSJunchao Zhang 6213394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6214394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6215394ed5ebSJunchao Zhang 6216394ed5ebSJunchao Zhang Output Parameters: 6217394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6218394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6219394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6220394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6221394ed5ebSJunchao Zhang 6222394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6223158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6224158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6225394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6226394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6227394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6228394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6229394ed5ebSJunchao Zhang 6230394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6231394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6232394ed5ebSJunchao Zhang 6233394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6234394ed5ebSJunchao Zhang 6235158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6236394ed5ebSJunchao Zhang */ 6237d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6238d71ae5a4SJacob Faibussowitsch { 6239394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6240394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6241394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6242394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6243394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6244394ed5ebSJunchao Zhang 6245394ed5ebSJunchao Zhang PetscFunctionBegin; 62469566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62479566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6248394ed5ebSJunchao Zhang m = rend - rstart; 6249394ed5ebSJunchao Zhang 6250651b1cf9SStefano Zampini /* Skip negative rows */ 6251651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62529371c9d4SSatish Balay if (i[k] >= 0) break; 6253394ed5ebSJunchao Zhang 6254394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6255394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6256394ed5ebSJunchao Zhang */ 6257394ed5ebSJunchao Zhang while (k < n) { 6258394ed5ebSJunchao Zhang row = i[k]; 6259394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62609371c9d4SSatish Balay for (s = k; s < n; s++) 62619371c9d4SSatish Balay if (i[s] != row) break; 6262651b1cf9SStefano Zampini 6263651b1cf9SStefano Zampini /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */ 6264394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 6265651b1cf9SStefano Zampini if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT; 626654c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6267394ed5ebSJunchao Zhang } 62689566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6269158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6270394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6271394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6272394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6273394ed5ebSJunchao Zhang 6274394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6275394ed5ebSJunchao Zhang Atot += mid - k; 6276394ed5ebSJunchao Zhang Btot += s - mid; 6277394ed5ebSJunchao Zhang 6278651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6279394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6280394ed5ebSJunchao Zhang col = j[p]; 62819371c9d4SSatish Balay do { 6282651b1cf9SStefano Zampini j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */ 62839371c9d4SSatish Balay p++; 6284651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6285394ed5ebSJunchao Zhang Annz++; 6286394ed5ebSJunchao Zhang } 6287394ed5ebSJunchao Zhang 6288651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6289394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6290394ed5ebSJunchao Zhang col = j[p]; 6291d71ae5a4SJacob Faibussowitsch do { 6292d71ae5a4SJacob Faibussowitsch p++; 6293d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6294394ed5ebSJunchao Zhang Bnnz++; 6295394ed5ebSJunchao Zhang } 6296394ed5ebSJunchao Zhang k = s; 6297394ed5ebSJunchao Zhang } 6298394ed5ebSJunchao Zhang 6299394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6300158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6301158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6302158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6303158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6304394ed5ebSJunchao Zhang 63056aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6306394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6307394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6308394ed5ebSJunchao Zhang k = rowBegin[r]; 6309394ed5ebSJunchao Zhang mid = rowMid[r]; 6310394ed5ebSJunchao Zhang s = rowEnd[r]; 63118e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63128e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6313394ed5ebSJunchao Zhang Atot += mid - k; 6314394ed5ebSJunchao Zhang Btot += s - mid; 6315394ed5ebSJunchao Zhang 6316394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6317394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6318394ed5ebSJunchao Zhang col = j[p]; 6319394ed5ebSJunchao Zhang q = p; 6320d71ae5a4SJacob Faibussowitsch do { 6321d71ae5a4SJacob Faibussowitsch p++; 6322d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6323394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6324394ed5ebSJunchao Zhang Annz++; 6325394ed5ebSJunchao Zhang } 6326394ed5ebSJunchao Zhang 6327394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6328394ed5ebSJunchao Zhang col = j[p]; 6329394ed5ebSJunchao Zhang q = p; 6330d71ae5a4SJacob Faibussowitsch do { 6331d71ae5a4SJacob Faibussowitsch p++; 6332d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6333394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6334394ed5ebSJunchao Zhang Bnnz++; 6335394ed5ebSJunchao Zhang } 6336394ed5ebSJunchao Zhang } 6337394ed5ebSJunchao Zhang /* Output */ 6338394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6339394ed5ebSJunchao Zhang *Annz_ = Annz; 6340394ed5ebSJunchao Zhang *Atot_ = Atot; 6341394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6342394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6343394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6344394ed5ebSJunchao Zhang *Btot_ = Btot; 6345394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6347394ed5ebSJunchao Zhang } 6348394ed5ebSJunchao Zhang 634927430b45SBarry Smith /* 635027430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6351158ec288SJunchao Zhang 6352158ec288SJunchao Zhang Input Parameters: 6353158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6354158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6355158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6356651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6357158ec288SJunchao Zhang 6358158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6359158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6360158ec288SJunchao Zhang 6361158ec288SJunchao Zhang Example: 6362158ec288SJunchao Zhang nnz1 = 4 6363158ec288SJunchao Zhang nnz = 6 6364158ec288SJunchao Zhang imap = [1,3,4,5] 6365158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6366158ec288SJunchao Zhang then, 6367158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6368158ec288SJunchao Zhang */ 6369d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6370d71ae5a4SJacob Faibussowitsch { 6371158ec288SJunchao Zhang PetscCount k, p; 6372158ec288SJunchao Zhang 6373158ec288SJunchao Zhang PetscFunctionBegin; 6374158ec288SJunchao Zhang jmap_new[0] = 0; 6375158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6376158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6377158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6378158ec288SJunchao Zhang } 6379158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6381158ec288SJunchao Zhang } 6382158ec288SJunchao Zhang 63832c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data) 63842c4ab24aSJunchao Zhang { 63852c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data; 63862c4ab24aSJunchao Zhang 63872c4ab24aSJunchao Zhang PetscFunctionBegin; 63882c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63892c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63902c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63912c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63922c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63932c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63942c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63952c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 63962c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 63972c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 63982c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 63992c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 64002c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 64012c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 64022c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 64032c4ab24aSJunchao Zhang } 64042c4ab24aSJunchao Zhang 6405d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6406d71ae5a4SJacob Faibussowitsch { 6407394ed5ebSJunchao Zhang MPI_Comm comm; 6408394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6409394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6410394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6411394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64122c4ab24aSJunchao Zhang PetscContainer container; 64132c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6414394ed5ebSJunchao Zhang 6415394ed5ebSJunchao Zhang PetscFunctionBegin; 64169566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64179566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6418cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6419eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6420cbc6b225SStefano Zampini #else 64219566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6422cbc6b225SStefano Zampini #endif 64239566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6424cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6425cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6426cbc6b225SStefano Zampini 64279566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64309566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64319566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64329566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64339566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64349566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64359566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6436394ed5ebSJunchao Zhang 64376aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6438394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6439394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6440e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6441e8729f6fSJunchao Zhang 6442e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6443394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6444394ed5ebSJunchao Zhang 6445394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6446394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6447394ed5ebSJunchao Zhang will have positive row indices. 6448394ed5ebSJunchao Zhang */ 6449394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 6450394ed5ebSJunchao Zhang if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT; /* e.g., -2^31, minimal to move them ahead */ 6451394ed5ebSJunchao Zhang else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */ 6452f7d195e4SLawrence Mitchell else { 6453f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 6454f7d195e4SLawrence Mitchell if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */ 6455f7d195e4SLawrence Mitchell } 6456394ed5ebSJunchao Zhang } 6457394ed5ebSJunchao Zhang 6458da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64599566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6460651b1cf9SStefano Zampini 6461651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6462651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64639371c9d4SSatish Balay if (i1[k] > PETSC_MIN_INT) break; 6464651b1cf9SStefano Zampini PetscInt i1start = k; 6465651b1cf9SStefano Zampini 64669566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */ 6467394ed5ebSJunchao Zhang for (; k < rem; k++) i1[k] += PETSC_MAX_INT; /* Revert row indices of local rows*/ 6468394ed5ebSJunchao Zhang 6469394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6470394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6471394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6472394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6473394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6474394ed5ebSJunchao Zhang const PetscInt *ranges; 6475394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6476394ed5ebSJunchao Zhang 64779566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64789566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6479394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6480394ed5ebSJunchao Zhang PetscMPIInt owner; 6481394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6482cbc6b225SStefano Zampini 6483394ed5ebSJunchao Zhang /* Locate a row range */ 6484394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64859566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6486394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6487394ed5ebSJunchao Zhang 6488394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 64899566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6490394ed5ebSJunchao Zhang 6491394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6492394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6493394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6494394ed5ebSJunchao Zhang PetscInt *nentries2; 6495394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6496cbc6b225SStefano Zampini 64979566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 64989566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 64999566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 65009566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6501394ed5ebSJunchao Zhang sendto = sendto2; 6502394ed5ebSJunchao Zhang nentries = nentries2; 6503394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6504394ed5ebSJunchao Zhang } 6505394ed5ebSJunchao Zhang sendto[nsend] = owner; 6506394ed5ebSJunchao Zhang nentries[nsend] = p - k; 65079566063dSJacob Faibussowitsch PetscCall(PetscCountCast(p - k, &nentries[nsend])); 6508394ed5ebSJunchao Zhang nsend++; 6509394ed5ebSJunchao Zhang k = p; 6510394ed5ebSJunchao Zhang } 6511394ed5ebSJunchao Zhang 6512394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6513394ed5ebSJunchao Zhang PetscSF sf1; 6514394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6515394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6516394ed5ebSJunchao Zhang PetscInt *offsets; 6517394ed5ebSJunchao Zhang PetscSFNode *iremote; 6518394ed5ebSJunchao Zhang 65199566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6522394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6523394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6524394ed5ebSJunchao Zhang iremote[k].index = 0; 6525394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 652654c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6527394ed5ebSJunchao Zhang } 65289566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65299566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65309566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65319566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6532e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6533394ed5ebSJunchao Zhang 6534394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6535394ed5ebSJunchao Zhang PetscSF sf2; 6536394ed5ebSJunchao Zhang nroots = nroots2; 6537394ed5ebSJunchao Zhang nleaves = nleaves2; 65389566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65399566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6541394ed5ebSJunchao Zhang p = 0; 6542394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 654354c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6544394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6545394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 6546394ed5ebSJunchao Zhang iremote[p].index = offsets[k] + q; 6547394ed5ebSJunchao Zhang } 6548394ed5ebSJunchao Zhang } 65499566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6550394ed5ebSJunchao Zhang 6551394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6552394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6553394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65549566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6555834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6556834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6557834dcf29SHansol Suh PetscInt *i1prem = i1 ? i1 + rem : NULL; /* silence ubsan warnings about pointer arithmetic on null pointer */ 6558834dcf29SHansol Suh PetscInt *j1prem = j1 ? j1 + rem : NULL; 6559834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6560834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6561834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6562834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6563394ed5ebSJunchao Zhang 65649566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65659566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6566394ed5ebSJunchao Zhang 6567394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6568394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65699566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6570394ed5ebSJunchao Zhang 6571651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6572651b1cf9SStefano Zampini PetscCount *Cperm1; 6573834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6574834dcf29SHansol Suh PetscCount *perm1prem = perm1 ? perm1 + rem : NULL; 6575651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6576834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6577651b1cf9SStefano Zampini 6578651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6579651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6580651b1cf9SStefano Zampini PetscBool hypre; 6581651b1cf9SStefano Zampini const char *name; 6582651b1cf9SStefano Zampini PetscCall(PetscObjectGetName((PetscObject)mat, &name)); 6583651b1cf9SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre)); 6584651b1cf9SStefano Zampini if (hypre) { 6585651b1cf9SStefano Zampini PetscInt *minj; 6586651b1cf9SStefano Zampini PetscBT hasdiag; 6587651b1cf9SStefano Zampini 6588651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6589651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 6590651b1cf9SStefano Zampini for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT; 6591651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6592651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6593651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6594651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6595651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6596651b1cf9SStefano Zampini } 6597651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6598651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6599651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6600651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6601651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6602651b1cf9SStefano Zampini } 6603651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6604651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6605651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6606651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6607651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6608651b1cf9SStefano Zampini } 6609651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6610651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6611651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6612651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6613651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6614651b1cf9SStefano Zampini } 6615651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6616651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6617651b1cf9SStefano Zampini } 6618651b1cf9SStefano Zampini 6619651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6620651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6621651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6622651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6623394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6624394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6625394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6626394ed5ebSJunchao Zhang 6627651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66289566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6629651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66309566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6631394ed5ebSJunchao Zhang 6632394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6633394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6634394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6635394ed5ebSJunchao Zhang 66369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6640394ed5ebSJunchao Zhang 6641394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6642158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6643158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6644158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6645158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6646394ed5ebSJunchao Zhang 66479566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66489566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6649158ec288SJunchao Zhang 6650158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6651158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6652158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6653158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6654158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6655158ec288SJunchao Zhang 6656158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6657158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6658158ec288SJunchao Zhang 6659158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6660158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6661158ec288SJunchao Zhang 6662158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6663158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6664158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6665158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66669566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66679566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6668e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66699566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6670394ed5ebSJunchao Zhang 6671158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6672158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6673158ec288SJunchao Zhang 6674394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6675394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6676394ed5ebSJunchao Zhang PetscInt *Aj_new; 66779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66789566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66799566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6680394ed5ebSJunchao Zhang Aj = Aj_new; 6681394ed5ebSJunchao Zhang } 6682394ed5ebSJunchao Zhang 6683394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6684394ed5ebSJunchao Zhang PetscInt *Bj_new; 66859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66869566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66879566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6688394ed5ebSJunchao Zhang Bj = Bj_new; 6689394ed5ebSJunchao Zhang } 6690394ed5ebSJunchao Zhang 6691cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6692394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6693cbc6b225SStefano Zampini MatType rtype; 6694394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6695cf8ba265SJunchao Zhang PetscObjectState state; 66969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66979566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6698394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 66999371c9d4SSatish Balay if (cstart) { 67009371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 67019371c9d4SSatish Balay } 6702c508b908SBarry Smith 67039566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6704c508b908SBarry Smith 6705c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6706c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 67079566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 67080da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6709c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6710c508b908SBarry Smith 6711c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6712c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 67139566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 67140da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6715c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6716c508b908SBarry Smith 67179566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67185bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6719cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6720cf8ba265SJunchao Zhang PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6721cbc6b225SStefano Zampini 6722394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6723394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 6724394ed5ebSJunchao Zhang a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */ 6725394ed5ebSJunchao Zhang a->free_a = b->free_a = PETSC_TRUE; 6726394ed5ebSJunchao Zhang a->free_ij = b->free_ij = PETSC_TRUE; 6727394ed5ebSJunchao Zhang 6728cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67299566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67309566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67319566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67329566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6733cbc6b225SStefano Zampini 67342c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67352c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67362c4ab24aSJunchao Zhang coo->n = coo_n; 67372c4ab24aSJunchao Zhang coo->sf = sf2; 67382c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67392c4ab24aSJunchao Zhang coo->recvlen = nroots; 67402c4ab24aSJunchao Zhang coo->Annz = Annz; 67412c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67422c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67432c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67442c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67452c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67462c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67472c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67482c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67492c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67502c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67512c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67522c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67532c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67542c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67552c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67562c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67572c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67582c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67592c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67602c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67612c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67622c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 67632c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67642c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67652c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6767394ed5ebSJunchao Zhang } 6768394ed5ebSJunchao Zhang 6769d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6770d71ae5a4SJacob Faibussowitsch { 6771394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6772394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6773394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67742c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67752c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67762c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67772c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67782c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67792c4ab24aSJunchao Zhang PetscContainer container; 67802c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6781394ed5ebSJunchao Zhang 6782394ed5ebSJunchao Zhang PetscFunctionBegin; 67832c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67842c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67852c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67862c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67872c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67882c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67892c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67902c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67912c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67922c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67932c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67942c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67952c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67962c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67972c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67982c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 67992c4ab24aSJunchao Zhang 68009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 68019566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6802394ed5ebSJunchao Zhang 6803394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 68042c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6805394ed5ebSJunchao Zhang 6806394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 68072c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6808394ed5ebSJunchao Zhang /* Add local entries to A and B */ 68092c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6810da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6811158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6812158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6813394ed5ebSJunchao Zhang } 68142c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6815158ec288SJunchao Zhang PetscScalar sum = 0.0; 6816158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6817158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6818394ed5ebSJunchao Zhang } 68192c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6820394ed5ebSJunchao Zhang 6821394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68222c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6823394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6824394ed5ebSJunchao Zhang } 68252c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6826394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6827394ed5ebSJunchao Zhang } 68289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6831394ed5ebSJunchao Zhang } 6832394ed5ebSJunchao Zhang 6833ccd8e176SBarry Smith /*MC 6834ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6835ccd8e176SBarry Smith 6836ccd8e176SBarry Smith Options Database Keys: 683711a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6838ccd8e176SBarry Smith 6839ccd8e176SBarry Smith Level: beginner 68400cd7f59aSBarry Smith 68410cd7f59aSBarry Smith Notes: 68422ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68430cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68440cd7f59aSBarry Smith in the matrix 68450cd7f59aSBarry Smith 684611a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 684711a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6848ccd8e176SBarry Smith 68491cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6850ccd8e176SBarry Smith M*/ 6851d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6852d71ae5a4SJacob Faibussowitsch { 6853ccd8e176SBarry Smith Mat_MPIAIJ *b; 6854ccd8e176SBarry Smith PetscMPIInt size; 6855ccd8e176SBarry Smith 6856ccd8e176SBarry Smith PetscFunctionBegin; 68579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68582205254eSKarl Rupp 68594dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6860ccd8e176SBarry Smith B->data = (void *)b; 6861aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6862ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6863ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6864ccd8e176SBarry Smith b->size = size; 68652205254eSKarl Rupp 68669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6867ccd8e176SBarry Smith 6868ccd8e176SBarry Smith /* build cache for off array entries formed */ 68699566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68702205254eSKarl Rupp 6871ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6872f4259b30SLisandro Dalcin b->colmap = NULL; 6873f4259b30SLisandro Dalcin b->garray = NULL; 6874ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6875ccd8e176SBarry Smith 6876ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68770298fd71SBarry Smith b->lvec = NULL; 68780298fd71SBarry Smith b->Mvctx = NULL; 6879ccd8e176SBarry Smith 6880ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6881f4259b30SLisandro Dalcin b->rowindices = NULL; 6882f4259b30SLisandro Dalcin b->rowvalues = NULL; 6883ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6884ccd8e176SBarry Smith 6885f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68860298fd71SBarry Smith b->spptr = NULL; 6887f60c3dc2SHong Zhang 68889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 68949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68983d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 68999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 69003d0639e7SStefano Zampini #endif 6901d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6902d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6903d5e393b6SSuyash Tandon #endif 69043d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 69059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 69063d0639e7SStefano Zampini #endif 69079779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 69089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6909191b95cbSRichard Tran Mills #endif 69109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 69119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 69129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 69139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 69145d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 69159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 69165d7652ecSHong Zhang #endif 6917d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6919d24d4204SJose E. Roman #endif 69209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69223dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69253dad0653Sstefano_zampini #endif 69269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69309566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6932ccd8e176SBarry Smith } 693381824310SBarry Smith 6934cce60c4dSBarry Smith /*@C 693511a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 693603bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 693703bfb495SBarry Smith 6938d083f849SBarry Smith Collective 693903bfb495SBarry Smith 694003bfb495SBarry Smith Input Parameters: 694103bfb495SBarry Smith + comm - MPI communicator 694211a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 694303bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6944d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 69452ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69462ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69472ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6948483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 694904ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 695003bfb495SBarry Smith . a - matrix values 6951483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69522ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 695303bfb495SBarry Smith - oa - matrix values 695403bfb495SBarry Smith 695503bfb495SBarry Smith Output Parameter: 695603bfb495SBarry Smith . mat - the matrix 695703bfb495SBarry Smith 695803bfb495SBarry Smith Level: advanced 695903bfb495SBarry Smith 696003bfb495SBarry Smith Notes: 69612ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc. The user 6962292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 696303bfb495SBarry Smith 69642ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 696503bfb495SBarry Smith 69662ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 696703bfb495SBarry Smith 69687b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69697b55108eSBarry Smith 6970dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6971dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6972dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6973dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 697411a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6975dca341c0SJed Brown communication if it is known that only local entries will be set. 697603bfb495SBarry Smith 69771cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6978db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69792b26979fSBarry Smith @*/ 6980d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6981d71ae5a4SJacob Faibussowitsch { 698203bfb495SBarry Smith Mat_MPIAIJ *maij; 698303bfb495SBarry Smith 698403bfb495SBarry Smith PetscFunctionBegin; 698508401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6986aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6987aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69889566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69899566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69909566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 699103bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69922205254eSKarl Rupp 69938d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 699403bfb495SBarry Smith 69959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 699703bfb495SBarry Smith 69989566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 69999566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 700003bfb495SBarry Smith 70019566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 70029566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 70039566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 70049566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 70059566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 70063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 700703bfb495SBarry Smith } 700803bfb495SBarry Smith 70094e84afc0SStefano Zampini typedef struct { 70104e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 70114e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 70124e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 70134e84afc0SStefano Zampini 70144e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 70154e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 70164e84afc0SStefano Zampini PetscScalar *bufa; 70174e84afc0SStefano Zampini Mat P_oth; 70184e84afc0SStefano Zampini 70194e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7020ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70214e84afc0SStefano Zampini 7022ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70234e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70244e84afc0SStefano Zampini of the temporary storage */ 70254e84afc0SStefano Zampini PetscBool reusesym; 70264e84afc0SStefano Zampini 70274e84afc0SStefano Zampini /* support for COO values insertion */ 7028ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7029ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7030ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7031ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7032c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7033c215019aSStefano Zampini PetscMemType mtype; 70344e84afc0SStefano Zampini 70354e84afc0SStefano Zampini /* customization */ 70364e84afc0SStefano Zampini PetscBool abmerge; 7037abb89eb1SStefano Zampini PetscBool P_oth_bind; 70384e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70394e84afc0SStefano Zampini 7040ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7041d71ae5a4SJacob Faibussowitsch { 70424e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70434e84afc0SStefano Zampini PetscInt i; 70444e84afc0SStefano Zampini 70454e84afc0SStefano Zampini PetscFunctionBegin; 70469566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70479566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70489566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70499566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70509566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70519566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70529566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 705348a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70549566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70559566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70569566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70579566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70589566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70599566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70614e84afc0SStefano Zampini } 70624e84afc0SStefano Zampini 7063fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7064fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7065fff043a9SJunchao Zhang */ 7066d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7067d71ae5a4SJacob Faibussowitsch { 7068c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7069c215019aSStefano Zampini 7070c215019aSStefano Zampini PetscFunctionBegin; 70719566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7072c215019aSStefano Zampini if (f) { 70739566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7074c215019aSStefano Zampini } else { 7075c215019aSStefano Zampini const PetscScalar *vv; 7076c215019aSStefano Zampini 70779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7078c215019aSStefano Zampini if (n && idx) { 7079c215019aSStefano Zampini PetscScalar *w = v; 7080c215019aSStefano Zampini const PetscInt *oi = idx; 7081c215019aSStefano Zampini PetscInt j; 7082c215019aSStefano Zampini 7083c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7084c215019aSStefano Zampini } else { 70859566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7086c215019aSStefano Zampini } 70879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7088c215019aSStefano Zampini } 70893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7090c215019aSStefano Zampini } 7091c215019aSStefano Zampini 7092d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7093d71ae5a4SJacob Faibussowitsch { 70944e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70954e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70964e84afc0SStefano Zampini 70974e84afc0SStefano Zampini PetscFunctionBegin; 70984e84afc0SStefano Zampini MatCheckProduct(C, 1); 709928b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 71004e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 71014e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 710248a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 710348a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 71044e84afc0SStefano Zampini } 71054e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7106abb89eb1SStefano Zampini 7107abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 710808401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 71099566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7110abb89eb1SStefano Zampini } 71114e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 71124e84afc0SStefano Zampini PetscInt noff = mmdata->off[i + 1] - mmdata->off[i]; 71134e84afc0SStefano Zampini 71144e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 71154e84afc0SStefano Zampini if (noff) { 7116c215019aSStefano Zampini PetscInt nown = mmdata->own[i + 1] - mmdata->own[i]; 7117c215019aSStefano Zampini 71189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71204e84afc0SStefano Zampini n_o += noff; 71214e84afc0SStefano Zampini n_d += nown; 71224e84afc0SStefano Zampini } else { 7123c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7124c215019aSStefano Zampini 71259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71264e84afc0SStefano Zampini n_d += mm->nz; 71274e84afc0SStefano Zampini } 71284e84afc0SStefano Zampini } 7129c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71309566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71319566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71324e84afc0SStefano Zampini } 71339566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71354e84afc0SStefano Zampini } 71364e84afc0SStefano Zampini 71374e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71384e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7139d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7140d71ae5a4SJacob Faibussowitsch { 71414e84afc0SStefano Zampini Mat_Product *product = C->product; 7142ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71434e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71444e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71454e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71464e84afc0SStefano Zampini IS glob = NULL; 71474e84afc0SStefano Zampini const char *prefix; 71484e84afc0SStefano Zampini char pprefix[256]; 71494e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 715082a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 715182a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7152ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7153ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7154ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7155ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7156ddea5d60SJunchao Zhang 71574e84afc0SStefano Zampini MatProductType ptype; 7158d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71594e84afc0SStefano Zampini PetscMPIInt size; 71604e84afc0SStefano Zampini 71614e84afc0SStefano Zampini PetscFunctionBegin; 71624e84afc0SStefano Zampini MatCheckProduct(C, 1); 716328b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71644e84afc0SStefano Zampini ptype = product->type; 7165b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7166fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7167fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7168fa046f9fSJunchao Zhang } 71694e84afc0SStefano Zampini switch (ptype) { 71704e84afc0SStefano Zampini case MATPRODUCT_AB: 71714e84afc0SStefano Zampini A = product->A; 71724e84afc0SStefano Zampini P = product->B; 71734e84afc0SStefano Zampini m = A->rmap->n; 71744e84afc0SStefano Zampini n = P->cmap->n; 71754e84afc0SStefano Zampini M = A->rmap->N; 71764e84afc0SStefano Zampini N = P->cmap->N; 7177ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71784e84afc0SStefano Zampini break; 71794e84afc0SStefano Zampini case MATPRODUCT_AtB: 71804e84afc0SStefano Zampini P = product->A; 71814e84afc0SStefano Zampini A = product->B; 71824e84afc0SStefano Zampini m = P->cmap->n; 71834e84afc0SStefano Zampini n = A->cmap->n; 71844e84afc0SStefano Zampini M = P->cmap->N; 71854e84afc0SStefano Zampini N = A->cmap->N; 71864e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71874e84afc0SStefano Zampini break; 71884e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71894e84afc0SStefano Zampini A = product->A; 71904e84afc0SStefano Zampini P = product->B; 71914e84afc0SStefano Zampini m = P->cmap->n; 71924e84afc0SStefano Zampini n = P->cmap->n; 71934e84afc0SStefano Zampini M = P->cmap->N; 71944e84afc0SStefano Zampini N = P->cmap->N; 71954e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71964e84afc0SStefano Zampini break; 7197d71ae5a4SJacob Faibussowitsch default: 7198d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 71994e84afc0SStefano Zampini } 72009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 72014e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 72024e84afc0SStefano Zampini 72034e84afc0SStefano Zampini /* defaults */ 72044e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 72054e84afc0SStefano Zampini mp[i] = NULL; 72064e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 72074e84afc0SStefano Zampini rmapt[i] = -1; 72084e84afc0SStefano Zampini cmapt[i] = -1; 72094e84afc0SStefano Zampini rmapa[i] = NULL; 72104e84afc0SStefano Zampini cmapa[i] = NULL; 72114e84afc0SStefano Zampini } 72124e84afc0SStefano Zampini 72134e84afc0SStefano Zampini /* customization */ 72149566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 72154e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 72164e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72174e84afc0SStefano Zampini if (product->api_user) { 7218d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72199566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72209566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7221d0609cedSBarry Smith PetscOptionsEnd(); 72224e84afc0SStefano Zampini } else { 7223d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72249566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72259566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7226d0609cedSBarry Smith PetscOptionsEnd(); 7227abb89eb1SStefano Zampini } 7228abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7229abb89eb1SStefano Zampini if (product->api_user) { 7230d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72319566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7232d0609cedSBarry Smith PetscOptionsEnd(); 7233abb89eb1SStefano Zampini } else { 7234d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72359566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7236d0609cedSBarry Smith PetscOptionsEnd(); 72374e84afc0SStefano Zampini } 72384e84afc0SStefano Zampini } 72394e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72404e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72439566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72449566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72459566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7246ddea5d60SJunchao Zhang 7247ddea5d60SJunchao Zhang cp = 0; 72484e84afc0SStefano Zampini switch (ptype) { 72494e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72509566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72514e84afc0SStefano Zampini 7252ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7253ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72544e84afc0SStefano Zampini /* P is product->B */ 72559566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72569566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72579566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72589566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72599566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72609566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72619566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72624e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72639566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72649566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72659566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72664e84afc0SStefano Zampini rmapt[cp] = 1; 72674e84afc0SStefano Zampini cmapt[cp] = 2; 72684e84afc0SStefano Zampini cmapa[cp] = globidx; 72694e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72704e84afc0SStefano Zampini cp++; 7271ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72729566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72739566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72749566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72759566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72769566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72779566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72784e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72799566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72809566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72814e84afc0SStefano Zampini rmapt[cp] = 1; 72824e84afc0SStefano Zampini cmapt[cp] = 1; 72834e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72844e84afc0SStefano Zampini cp++; 72859566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72869566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72879566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72889566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72899566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72909566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72914e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72929566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72939566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72944e84afc0SStefano Zampini rmapt[cp] = 1; 72954e84afc0SStefano Zampini cmapt[cp] = 2; 72964e84afc0SStefano Zampini cmapa[cp] = p->garray; 72974e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72984e84afc0SStefano Zampini cp++; 72994e84afc0SStefano Zampini } 7300ddea5d60SJunchao Zhang 7301ddea5d60SJunchao Zhang /* A_off * P_other */ 73024e84afc0SStefano Zampini if (mmdata->P_oth) { 73039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 73049566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7305f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73069566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73079566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73089566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73099566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73109566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73119566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73129566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73134e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73149566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73159566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73164e84afc0SStefano Zampini rmapt[cp] = 1; 73174e84afc0SStefano Zampini cmapt[cp] = 2; 73184e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73194e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73204e84afc0SStefano Zampini cp++; 73214e84afc0SStefano Zampini } 73224e84afc0SStefano Zampini break; 7323ddea5d60SJunchao Zhang 73244e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73254e84afc0SStefano Zampini /* A is product->B */ 73269566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7327ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73289566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73299566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73309566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73319566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73329566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73339566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73344e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73359566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73369566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73379566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73384e84afc0SStefano Zampini rmapt[cp] = 2; 73394e84afc0SStefano Zampini rmapa[cp] = globidx; 73404e84afc0SStefano Zampini cmapt[cp] = 2; 73414e84afc0SStefano Zampini cmapa[cp] = globidx; 73424e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73434e84afc0SStefano Zampini cp++; 73444e84afc0SStefano Zampini } else { 73459566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73469566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73479566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73489566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73499566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73509566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73514e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73529566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73539566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73554e84afc0SStefano Zampini rmapt[cp] = 1; 73564e84afc0SStefano Zampini cmapt[cp] = 2; 73574e84afc0SStefano Zampini cmapa[cp] = globidx; 73584e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73594e84afc0SStefano Zampini cp++; 73609566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73619566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73629566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73639566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73649566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73659566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73664e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73679566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73689566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73694e84afc0SStefano Zampini rmapt[cp] = 2; 73704e84afc0SStefano Zampini rmapa[cp] = p->garray; 73714e84afc0SStefano Zampini cmapt[cp] = 2; 73724e84afc0SStefano Zampini cmapa[cp] = globidx; 73734e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73744e84afc0SStefano Zampini cp++; 73754e84afc0SStefano Zampini } 73764e84afc0SStefano Zampini break; 73774e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73789566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73794e84afc0SStefano Zampini /* P is product->B */ 73809566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73819566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73829566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73839566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73849566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73859566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73869566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73874e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73889566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73899566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73909566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73914e84afc0SStefano Zampini rmapt[cp] = 2; 73924e84afc0SStefano Zampini rmapa[cp] = globidx; 73934e84afc0SStefano Zampini cmapt[cp] = 2; 73944e84afc0SStefano Zampini cmapa[cp] = globidx; 73954e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73964e84afc0SStefano Zampini cp++; 73974e84afc0SStefano Zampini if (mmdata->P_oth) { 73989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 73999566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7400f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 74019566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 74029566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 74039566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 74049566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74059566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74069566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74079566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74084e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74099566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74109566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74114e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 74124e84afc0SStefano Zampini cp++; 74139566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 74149566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74159566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74169566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74179566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74189566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74194e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74209566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74219566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74224e84afc0SStefano Zampini rmapt[cp] = 2; 74234e84afc0SStefano Zampini rmapa[cp] = globidx; 74244e84afc0SStefano Zampini cmapt[cp] = 2; 74254e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74264e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74274e84afc0SStefano Zampini cp++; 74284e84afc0SStefano Zampini } 74294e84afc0SStefano Zampini break; 7430d71ae5a4SJacob Faibussowitsch default: 7431d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74324e84afc0SStefano Zampini } 74334e84afc0SStefano Zampini /* sanity check */ 74349371c9d4SSatish Balay if (size > 1) 74359371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74364e84afc0SStefano Zampini 74379566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7438ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7439ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7440ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7441ddea5d60SJunchao Zhang } 74424e84afc0SStefano Zampini mmdata->cp = cp; 74434e84afc0SStefano Zampini C->product->data = mmdata; 74444e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74454e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74464e84afc0SStefano Zampini 7447c215019aSStefano Zampini /* memory type */ 7448c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7450d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7452c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7453d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74543214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7455c215019aSStefano Zampini 74564e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7457ddea5d60SJunchao Zhang 7458ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7459ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7460ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7461ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7462ddea5d60SJunchao Zhang */ 74634e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74644e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74654e84afc0SStefano Zampini if (mptmp[cp]) continue; 7466ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74674e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74684e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74694e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74704e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74714e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74724e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74734e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74744e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7475ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7476ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74774e84afc0SStefano Zampini } 74784e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74794e84afc0SStefano Zampini } 7480ddea5d60SJunchao Zhang 7481ddea5d60SJunchao Zhang /* 7482ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7483ddea5d60SJunchao Zhang 7484ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7485ddea5d60SJunchao Zhang 7486d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7487ddea5d60SJunchao Zhang 7488ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7489ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7490ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7491ddea5d60SJunchao Zhang 7492ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7493da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7494ddea5d60SJunchao Zhang */ 74959566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7497ddea5d60SJunchao Zhang 7498ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7499ddea5d60SJunchao Zhang if (hasoffproc) { 75004e84afc0SStefano Zampini PetscSF msf; 75014e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 75024e84afc0SStefano Zampini 75039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 75049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 75059566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7506ddea5d60SJunchao Zhang 75074e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 75084e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75094e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 75104e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7511ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 75124e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75134e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75144e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75154e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 75164e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75174e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75184e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75194e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75204e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75214e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75224e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75234e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75244e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7525ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75264e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75274e84afc0SStefano Zampini *coi++ = gr; 75284e84afc0SStefano Zampini *idxoff++ = j; 75294e84afc0SStefano Zampini } 75304e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75314e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75324e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75334e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75344e84afc0SStefano Zampini } else { /* offdiag */ 75354e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75364e84afc0SStefano Zampini } 75374e84afc0SStefano Zampini ncoo_o += nz; 7538ddea5d60SJunchao Zhang } else { /* this is a local row */ 75394e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75404e84afc0SStefano Zampini } 75414e84afc0SStefano Zampini } 75424e84afc0SStefano Zampini } 75434e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75444e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75454e84afc0SStefano Zampini } 75464e84afc0SStefano Zampini 75479566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75489566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75499566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75509566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75514e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75529566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75539566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75549566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75559566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75569566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75579566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7558ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75599566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75604e84afc0SStefano Zampini coo_i = coo_i2; 75614e84afc0SStefano Zampini coo_j = coo_j2; 75624e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75634e84afc0SStefano Zampini ncoo = ncoo_d; 75649566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7565c215019aSStefano Zampini 75669566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75679566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75689566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75694e84afc0SStefano Zampini } 7570c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75714e84afc0SStefano Zampini 7572ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75734e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75744e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75754e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75764e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75774e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75784e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75794e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75804e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75814e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75824e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75834e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75844e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75854e84afc0SStefano Zampini 75864e84afc0SStefano Zampini if (mptmp[cp]) continue; 7587ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7588ddea5d60SJunchao Zhang /* fill coo_i */ 75894e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75904e84afc0SStefano Zampini const PetscInt gr = i + rs; 75914e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75924e84afc0SStefano Zampini } 7593ddea5d60SJunchao Zhang /* fill coo_j */ 7594ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75959566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7596ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7597ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7598ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75994e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 76004e84afc0SStefano Zampini } 76014e84afc0SStefano Zampini ncoo_d += mm->nz; 7602ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 76034e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76044e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 76054e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 76064e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7607ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 76084e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7609ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76104e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 76114e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 76124e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7613ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76144e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 76154e84afc0SStefano Zampini } 76164e84afc0SStefano Zampini ncoo_d += nz; 76174e84afc0SStefano Zampini } 76184e84afc0SStefano Zampini } 76194e84afc0SStefano Zampini } 76204e84afc0SStefano Zampini } 762148a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76229566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 762348a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76249566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7625ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76269566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76274e84afc0SStefano Zampini 76284e84afc0SStefano Zampini /* preallocate with COO data */ 76299566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76309566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76324e84afc0SStefano Zampini } 76334e84afc0SStefano Zampini 7634d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7635d71ae5a4SJacob Faibussowitsch { 76364e84afc0SStefano Zampini Mat_Product *product = mat->product; 76374e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76384e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7639abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76404e84afc0SStefano Zampini #else 76414e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76424e84afc0SStefano Zampini #endif 76434e84afc0SStefano Zampini 76444e84afc0SStefano Zampini PetscFunctionBegin; 76454e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76464e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 764748a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 764865e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7649abb89eb1SStefano Zampini switch (product->type) { 7650abb89eb1SStefano Zampini case MATPRODUCT_AB: 7651abb89eb1SStefano Zampini if (product->api_user) { 7652d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76539566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7654d0609cedSBarry Smith PetscOptionsEnd(); 7655abb89eb1SStefano Zampini } else { 7656d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76579566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7658d0609cedSBarry Smith PetscOptionsEnd(); 7659abb89eb1SStefano Zampini } 7660abb89eb1SStefano Zampini break; 7661abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7662abb89eb1SStefano Zampini if (product->api_user) { 7663d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76649566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7665d0609cedSBarry Smith PetscOptionsEnd(); 7666abb89eb1SStefano Zampini } else { 7667d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76689566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7669d0609cedSBarry Smith PetscOptionsEnd(); 7670abb89eb1SStefano Zampini } 7671abb89eb1SStefano Zampini break; 7672abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7673abb89eb1SStefano Zampini if (product->api_user) { 7674d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76759566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7676d0609cedSBarry Smith PetscOptionsEnd(); 7677abb89eb1SStefano Zampini } else { 7678d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76799566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7680d0609cedSBarry Smith PetscOptionsEnd(); 7681abb89eb1SStefano Zampini } 7682abb89eb1SStefano Zampini break; 7683d71ae5a4SJacob Faibussowitsch default: 7684d71ae5a4SJacob Faibussowitsch break; 7685abb89eb1SStefano Zampini } 7686abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7687abb89eb1SStefano Zampini } 76884e84afc0SStefano Zampini #endif 76894e84afc0SStefano Zampini if (match) { 76904e84afc0SStefano Zampini switch (product->type) { 76914e84afc0SStefano Zampini case MATPRODUCT_AB: 76924e84afc0SStefano Zampini case MATPRODUCT_AtB: 7693d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7694d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7695d71ae5a4SJacob Faibussowitsch break; 7696d71ae5a4SJacob Faibussowitsch default: 7697d71ae5a4SJacob Faibussowitsch break; 76984e84afc0SStefano Zampini } 76994e84afc0SStefano Zampini } 77004e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 77019566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 77023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 770381824310SBarry Smith } 770498921bdaSJacob Faibussowitsch 770598921bdaSJacob Faibussowitsch /* 770672833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 770772833a62Smarkadams4 770872833a62Smarkadams4 n - the number of block indices in cc[] 770972833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 771072833a62Smarkadams4 */ 7711d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7712d71ae5a4SJacob Faibussowitsch { 771372833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 771472833a62Smarkadams4 const PetscInt *idx; 771572833a62Smarkadams4 771672833a62Smarkadams4 PetscFunctionBegin; 771772833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 771872833a62Smarkadams4 if (nidx) { 771972833a62Smarkadams4 cnt = 0; 772072833a62Smarkadams4 cc[cnt] = idx[0] / bs; 772172833a62Smarkadams4 for (j = 1; j < nidx; j++) { 772272833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 772372833a62Smarkadams4 } 772472833a62Smarkadams4 } 772572833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 772672833a62Smarkadams4 *n = cnt + 1; 77273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772872833a62Smarkadams4 } 772972833a62Smarkadams4 773072833a62Smarkadams4 /* 773172833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 773272833a62Smarkadams4 773372833a62Smarkadams4 ncollapsed - the number of block indices 773472833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 773572833a62Smarkadams4 */ 7736d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7737d71ae5a4SJacob Faibussowitsch { 773872833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 773972833a62Smarkadams4 774072833a62Smarkadams4 PetscFunctionBegin; 774172833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 774272833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 774372833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 774472833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77459371c9d4SSatish Balay cprevtmp = cprev; 77469371c9d4SSatish Balay cprev = merged; 77479371c9d4SSatish Balay merged = cprevtmp; 774872833a62Smarkadams4 } 774972833a62Smarkadams4 *ncollapsed = nprev; 775072833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 775272833a62Smarkadams4 } 775372833a62Smarkadams4 77542d776b49SBarry Smith /* 775572833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 775672833a62Smarkadams4 775772833a62Smarkadams4 Input Parameter: 775872833a62Smarkadams4 . Amat - matrix 775972833a62Smarkadams4 - symmetrize - make the result symmetric 776072833a62Smarkadams4 + scale - scale with diagonal 776172833a62Smarkadams4 776272833a62Smarkadams4 Output Parameter: 776372833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 776472833a62Smarkadams4 776572833a62Smarkadams4 */ 7766e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7767d71ae5a4SJacob Faibussowitsch { 776872833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 776972833a62Smarkadams4 MPI_Comm comm; 777072833a62Smarkadams4 Mat Gmat; 777172833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 777272833a62Smarkadams4 Mat a, b, c; 777372833a62Smarkadams4 MatType jtype; 777472833a62Smarkadams4 777572833a62Smarkadams4 PetscFunctionBegin; 777672833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 777772833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 777872833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 777972833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 778072833a62Smarkadams4 nloc = (Iend - Istart) / bs; 778172833a62Smarkadams4 778272833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 778372833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 778472833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 778572833a62Smarkadams4 778672833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 778772833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 778872833a62Smarkadams4 implementation */ 778972833a62Smarkadams4 if (bs > 1) { 779072833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 779172833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 779272833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 779372833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 779472833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 779572833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 779672833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 77972cf69117Smarkadams4 MatScalar *aa, val, *AA; 77982cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 77999371c9d4SSatish Balay if (isseqaij) { 78009371c9d4SSatish Balay a = Amat; 78019371c9d4SSatish Balay b = NULL; 78029371c9d4SSatish Balay } else { 780372833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 78049371c9d4SSatish Balay a = d->A; 78059371c9d4SSatish Balay b = d->B; 780672833a62Smarkadams4 } 780772833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 780872833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 780972833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 78102cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 781159ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 781259ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 781359ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 781459ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 781559ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 781672833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 781759ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 781859ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 781959ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 782059ee9f9fSPierre Jolivet else { 782159ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 782259ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 782359ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 782472833a62Smarkadams4 } 782559ee9f9fSPierre Jolivet } 782659ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 782759ee9f9fSPierre Jolivet } 782859ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 782972833a62Smarkadams4 if (!ok) { 783072833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 783159ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 783272833a62Smarkadams4 goto old_bs; 783372833a62Smarkadams4 } 783472833a62Smarkadams4 } 783572833a62Smarkadams4 } 783672833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 783772833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 783872833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78392cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 784072833a62Smarkadams4 // diag 784172833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 784272833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 784372833a62Smarkadams4 ai = aseq->i; 784472833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 784572833a62Smarkadams4 aj = aseq->j + ai[brow]; 784672833a62Smarkadams4 for (int k = 0; k < n; k += bs) { // block columns 784772833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 784872833a62Smarkadams4 val = 0; 7849e02fb3cdSMark Adams if (index_size == 0) { 785072833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 785172833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 785272833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // columns in block 785372833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 785472833a62Smarkadams4 } 785572833a62Smarkadams4 } 7856e02fb3cdSMark Adams } else { // use (index,index) value if provided 7857e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7858e02fb3cdSMark Adams int ii = index[iii]; 7859e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 7860e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // columns in block 7861e02fb3cdSMark Adams int jj = index[jjj]; 7862cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7863e02fb3cdSMark Adams } 7864e02fb3cdSMark Adams } 7865e02fb3cdSMark Adams } 786659ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 786772833a62Smarkadams4 AA[k / bs] = val; 786872833a62Smarkadams4 } 786972833a62Smarkadams4 grow = Istart / bs + brow / bs; 787066521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 787172833a62Smarkadams4 } 787272833a62Smarkadams4 // off-diag 787372833a62Smarkadams4 if (ismpiaij) { 787472833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 787572833a62Smarkadams4 const PetscScalar *vals; 787672833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 787772833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 787872833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 787972833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 788072833a62Smarkadams4 for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 788159ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 788272833a62Smarkadams4 AA[k / bs] = 0; 788372833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 788472833a62Smarkadams4 } 788572833a62Smarkadams4 nc = ncols / bs; 788672833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7887e02fb3cdSMark Adams if (index_size == 0) { 788872833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 788972833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 789072833a62Smarkadams4 for (int k = 0; k < ncols; k += bs) { 789172833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // cols in block 789259ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 789372833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 789472833a62Smarkadams4 } 789572833a62Smarkadams4 } 789672833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 789772833a62Smarkadams4 } 7898e02fb3cdSMark Adams } else { // use (index,index) value if provided 7899e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7900e02fb3cdSMark Adams int ii = index[iii]; 7901e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 7902e02fb3cdSMark Adams for (int k = 0; k < ncols; k += bs) { 7903e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // cols in block 7904e02fb3cdSMark Adams int jj = index[jjj]; 7905e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7906e02fb3cdSMark Adams } 7907e02fb3cdSMark Adams } 7908e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7909e02fb3cdSMark Adams } 7910e02fb3cdSMark Adams } 791172833a62Smarkadams4 grow = Istart / bs + brow / bs; 791266521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 791372833a62Smarkadams4 } 791472833a62Smarkadams4 } 791572833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 791672833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79172cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 791872833a62Smarkadams4 } else { 791972833a62Smarkadams4 const PetscScalar *vals; 792072833a62Smarkadams4 const PetscInt *idx; 792172833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 792272833a62Smarkadams4 old_bs: 792372833a62Smarkadams4 /* 792472833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 792572833a62Smarkadams4 */ 792672833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 792772833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 792872833a62Smarkadams4 if (isseqaij) { 792972833a62Smarkadams4 PetscInt max_d_nnz; 793072833a62Smarkadams4 /* 793172833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 793272833a62Smarkadams4 */ 793372833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 793472833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 793572833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 793648a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 793772833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 793872833a62Smarkadams4 } else if (ismpiaij) { 793972833a62Smarkadams4 Mat Daij, Oaij; 794072833a62Smarkadams4 const PetscInt *garray; 794172833a62Smarkadams4 PetscInt max_d_nnz; 794272833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 794372833a62Smarkadams4 /* 794472833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 794572833a62Smarkadams4 */ 794672833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 794772833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 794872833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 794948a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 795072833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 795172833a62Smarkadams4 /* 795272833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 795372833a62Smarkadams4 */ 795472833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 795572833a62Smarkadams4 o_nnz[jj] = 0; 795672833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 795772833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 795872833a62Smarkadams4 o_nnz[jj] += ncols; 795972833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 796072833a62Smarkadams4 } 796172833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 796272833a62Smarkadams4 } 796372833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 796472833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 796572833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 796672833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 796772833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 796872833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 796972833a62Smarkadams4 PetscInt dest_row = Ii / bs; 797072833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 797172833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 797272833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 797372833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 797472833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 797572833a62Smarkadams4 } 797672833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 797772833a62Smarkadams4 } 797872833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 797972833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 798072833a62Smarkadams4 } 798172833a62Smarkadams4 } else { 79822d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79832d776b49SBarry Smith else { 79842d776b49SBarry Smith Gmat = Amat; 79852d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 79862d776b49SBarry Smith } 79879371c9d4SSatish Balay if (isseqaij) { 79889371c9d4SSatish Balay a = Gmat; 79899371c9d4SSatish Balay b = NULL; 79909371c9d4SSatish Balay } else { 799172833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 79929371c9d4SSatish Balay a = d->A; 79939371c9d4SSatish Balay b = d->B; 799472833a62Smarkadams4 } 79952d776b49SBarry Smith if (filter >= 0 || scale) { 79962d776b49SBarry Smith /* take absolute value of each entry */ 799772833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 799872833a62Smarkadams4 MatInfo info; 799972833a62Smarkadams4 PetscScalar *avals; 800072833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 800172833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 800272833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 800372833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 800472833a62Smarkadams4 } 800572833a62Smarkadams4 } 80062d776b49SBarry Smith } 800772833a62Smarkadams4 if (symmetrize) { 8008b94d7dedSBarry Smith PetscBool isset, issym; 8009b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8010b94d7dedSBarry Smith if (!isset || !issym) { 801172833a62Smarkadams4 Mat matTrans; 801272833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80131fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 801472833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 801572833a62Smarkadams4 } 801672833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80172d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 801872833a62Smarkadams4 if (scale) { 801972833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 802072833a62Smarkadams4 Vec diag; 802172833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 802272833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 802372833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 802472833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 802572833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 802672833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 802772833a62Smarkadams4 } 802872833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80292d776b49SBarry Smith 80302d776b49SBarry Smith if (filter >= 0) { 80312ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80322ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80332d776b49SBarry Smith } 803472833a62Smarkadams4 *a_Gmat = Gmat; 80353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 803672833a62Smarkadams4 } 803772833a62Smarkadams4 803872833a62Smarkadams4 /* 803998921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 804098921bdaSJacob Faibussowitsch */ 804198921bdaSJacob Faibussowitsch 804298921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80439566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80449566063dSJacob Faibussowitsch #undef PetscCall 80459371c9d4SSatish Balay #define PetscCall(...) \ 80469371c9d4SSatish Balay do { \ 80475f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 804898921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 804998921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 805098921bdaSJacob Faibussowitsch return; \ 805198921bdaSJacob Faibussowitsch } \ 805298921bdaSJacob Faibussowitsch } while (0) 805398921bdaSJacob Faibussowitsch 805498921bdaSJacob Faibussowitsch #undef SETERRQ 80559371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80569371c9d4SSatish Balay do { \ 805798921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 805898921bdaSJacob Faibussowitsch return; \ 805998921bdaSJacob Faibussowitsch } while (0) 806098921bdaSJacob Faibussowitsch 806198921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 806298921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 806398921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 806498921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 806598921bdaSJacob Faibussowitsch #else 806698921bdaSJacob Faibussowitsch #endif 8067d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8068d71ae5a4SJacob Faibussowitsch { 806998921bdaSJacob Faibussowitsch Mat mat = *mmat; 807098921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 807198921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 807298921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 807398921bdaSJacob Faibussowitsch PetscScalar value; 807498921bdaSJacob Faibussowitsch 807598921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 807698921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80775f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 807898921bdaSJacob Faibussowitsch { 807998921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 808098921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 808198921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 808298921bdaSJacob Faibussowitsch 808398921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 808498921bdaSJacob Faibussowitsch Mat A = aij->A; 808598921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 808698921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 808798921bdaSJacob Faibussowitsch MatScalar *aa; 8088f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 808998921bdaSJacob Faibussowitsch Mat B = aij->B; 809098921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 809198921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 809298921bdaSJacob Faibussowitsch MatScalar *ba; 809398921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 809498921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 809598921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 809698921bdaSJacob Faibussowitsch 809798921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 809898921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 809998921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 810098921bdaSJacob Faibussowitsch 810198921bdaSJacob Faibussowitsch PetscFunctionBegin; 81029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 810498921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 810598921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81066bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 810798921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 810898921bdaSJacob Faibussowitsch row = im[i] - rstart; 810998921bdaSJacob Faibussowitsch lastcol1 = -1; 811098921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 811198921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 811298921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 811398921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 811498921bdaSJacob Faibussowitsch low1 = 0; 811598921bdaSJacob Faibussowitsch high1 = nrow1; 811698921bdaSJacob Faibussowitsch lastcol2 = -1; 811798921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 811898921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 811998921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 812098921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 812198921bdaSJacob Faibussowitsch low2 = 0; 812298921bdaSJacob Faibussowitsch high2 = nrow2; 812398921bdaSJacob Faibussowitsch 812498921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 812598921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 812698921bdaSJacob Faibussowitsch else value = v[i + j * m]; 812798921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 812898921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 812998921bdaSJacob Faibussowitsch col = in[j] - cstart; 813098921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 813198921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 813298921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 813363a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 813498921bdaSJacob Faibussowitsch } else { 813598921bdaSJacob Faibussowitsch if (mat->was_assembled) { 813648a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 813798921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8138eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 813998921bdaSJacob Faibussowitsch col--; 814098921bdaSJacob Faibussowitsch #else 814198921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 814298921bdaSJacob Faibussowitsch #endif 8143f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 81449566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 814598921bdaSJacob Faibussowitsch col = in[j]; 814698921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 814798921bdaSJacob Faibussowitsch B = aij->B; 814898921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81499371c9d4SSatish Balay bimax = b->imax; 81509371c9d4SSatish Balay bi = b->i; 81519371c9d4SSatish Balay bilen = b->ilen; 81529371c9d4SSatish Balay bj = b->j; 815398921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 815498921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 815598921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 815698921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 815798921bdaSJacob Faibussowitsch low2 = 0; 815898921bdaSJacob Faibussowitsch high2 = nrow2; 815998921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 816098921bdaSJacob Faibussowitsch ba = b->a; 816198921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 816298921bdaSJacob Faibussowitsch } 816398921bdaSJacob Faibussowitsch } else col = in[j]; 816498921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 816598921bdaSJacob Faibussowitsch } 816698921bdaSJacob Faibussowitsch } 816798921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 816898921bdaSJacob Faibussowitsch if (roworiented) { 81699566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 817098921bdaSJacob Faibussowitsch } else { 81719566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 817298921bdaSJacob Faibussowitsch } 817398921bdaSJacob Faibussowitsch } 817498921bdaSJacob Faibussowitsch } 81759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 817798921bdaSJacob Faibussowitsch } 817898921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 817998921bdaSJacob Faibussowitsch } 818072833a62Smarkadams4 818198921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 818298921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 818398921bdaSJacob Faibussowitsch * original definitions */ 81849566063dSJacob Faibussowitsch #undef PetscCall 818598921bdaSJacob Faibussowitsch #undef SETERRQ 8186