xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision cff58d652c764314d7039da79a2cfc9cc3764cc7)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
1026cec326SBarry Smith {
1126cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1226cec326SBarry Smith 
1326cec326SBarry Smith   PetscFunctionBegin;
1426cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1526cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1626cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
1726cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
1826cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2026cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2126cec326SBarry Smith #else
2226cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
2326cec326SBarry Smith #endif
2426cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
2526cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
2626cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
2726cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
2826cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
2926cec326SBarry Smith 
3026cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3126cec326SBarry Smith 
3226cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
3326cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
3426cec326SBarry Smith 
3526cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
4126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
4326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
4726cec326SBarry Smith #endif
4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
4926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
5026cec326SBarry Smith #endif
5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
5226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
5326cec326SBarry Smith #endif
5426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
5726cec326SBarry Smith #endif
5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
6026cec326SBarry Smith #endif
6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
6226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
6326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
6426cec326SBarry Smith #endif
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
6926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
7326cec326SBarry Smith #endif
7426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
7626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
7726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
7926cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
8026cec326SBarry Smith }
8126cec326SBarry Smith 
8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
8326cec326SBarry Smith #define TYPE AIJ
8426cec326SBarry Smith #define TYPE_AIJ
8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
8626cec326SBarry Smith #undef TYPE
8726cec326SBarry Smith #undef TYPE_AIJ
8826cec326SBarry Smith 
89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
90d71ae5a4SJacob Faibussowitsch {
918a9c020eSBarry Smith   Mat B;
928a9c020eSBarry Smith 
938a9c020eSBarry Smith   PetscFunctionBegin;
948a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
958a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
968a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
97501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
998a9c020eSBarry Smith }
1008a9c020eSBarry Smith 
101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
102d71ae5a4SJacob Faibussowitsch {
1038a9c020eSBarry Smith   Mat B;
1048a9c020eSBarry Smith 
1058a9c020eSBarry Smith   PetscFunctionBegin;
1068a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1078a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
108501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1108a9c020eSBarry Smith }
1118a9c020eSBarry Smith 
11201bebe75SBarry Smith /*MC
11301bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
11401bebe75SBarry Smith 
11511a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
11611a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
11711a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
11801bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
11901bebe75SBarry Smith   the above preallocation routines for simplicity.
12001bebe75SBarry Smith 
12127430b45SBarry Smith    Options Database Key:
12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
12301bebe75SBarry Smith 
12411a5261eSBarry Smith   Developer Note:
1252ef1f0ffSBarry Smith   Level: beginner
1262ef1f0ffSBarry Smith 
12711a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
12801bebe75SBarry Smith    enough exist.
12901bebe75SBarry Smith 
1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
13101bebe75SBarry Smith M*/
13201bebe75SBarry Smith 
13301bebe75SBarry Smith /*MC
13401bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
13501bebe75SBarry Smith 
13611a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
13711a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
13811a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
13901bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14001bebe75SBarry Smith   the above preallocation routines for simplicity.
14101bebe75SBarry Smith 
14227430b45SBarry Smith    Options Database Key:
14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
14401bebe75SBarry Smith 
14501bebe75SBarry Smith   Level: beginner
14601bebe75SBarry Smith 
1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
14801bebe75SBarry Smith M*/
14901bebe75SBarry Smith 
150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
151d71ae5a4SJacob Faibussowitsch {
152f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
153f74ef234SStefano Zampini 
154f74ef234SStefano Zampini   PetscFunctionBegin;
155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
156b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
157f74ef234SStefano Zampini #endif
1581baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1591baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1603120d049SRichard Tran Mills 
1613120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1623120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1633120d049SRichard Tran Mills    * to differ from the parent matrix. */
1641baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1651baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
167f74ef234SStefano Zampini }
168f74ef234SStefano Zampini 
169ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
170d71ae5a4SJacob Faibussowitsch {
17126bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
17226bda2c4Sstefano_zampini 
17326bda2c4Sstefano_zampini   PetscFunctionBegin;
17446533700Sstefano_zampini   if (mat->A) {
1759566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1769566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
17746533700Sstefano_zampini   }
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17926bda2c4Sstefano_zampini }
18026bda2c4Sstefano_zampini 
181ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
182d71ae5a4SJacob Faibussowitsch {
18327d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
18427d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
18527d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
18627d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
187ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
18827d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
18927d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
19027d4218bSShri Abhyankar 
19127d4218bSShri Abhyankar   PetscFunctionBegin;
192f4259b30SLisandro Dalcin   *keptrows = NULL;
193ce496241SStefano Zampini 
19427d4218bSShri Abhyankar   ia = a->i;
19527d4218bSShri Abhyankar   ib = b->i;
1969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
1979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
19827d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
19927d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
20027d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
20127d4218bSShri Abhyankar     if (!na && !nb) {
20227d4218bSShri Abhyankar       cnt++;
20327d4218bSShri Abhyankar       goto ok1;
20427d4218bSShri Abhyankar     }
205ce496241SStefano Zampini     aa = aav + ia[i];
20627d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
20727d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
20827d4218bSShri Abhyankar     }
2098e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
21027d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
21127d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
21227d4218bSShri Abhyankar     }
21327d4218bSShri Abhyankar     cnt++;
21427d4218bSShri Abhyankar   ok1:;
21527d4218bSShri Abhyankar   }
2161c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
217ce496241SStefano Zampini   if (!n0rows) {
2189566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2203ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
221ce496241SStefano Zampini   }
2229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
22327d4218bSShri Abhyankar   cnt = 0;
22427d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22527d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22627d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22727d4218bSShri Abhyankar     if (!na && !nb) continue;
228ce496241SStefano Zampini     aa = aav + ia[i];
22927d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
23027d4218bSShri Abhyankar       if (aa[j] != 0.0) {
23127d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23227d4218bSShri Abhyankar         goto ok2;
23327d4218bSShri Abhyankar       }
23427d4218bSShri Abhyankar     }
2358e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23627d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23727d4218bSShri Abhyankar       if (bb[j] != 0.0) {
23827d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23927d4218bSShri Abhyankar         goto ok2;
24027d4218bSShri Abhyankar       }
24127d4218bSShri Abhyankar     }
24227d4218bSShri Abhyankar   ok2:;
24327d4218bSShri Abhyankar   }
2449566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2469566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24827d4218bSShri Abhyankar }
24927d4218bSShri Abhyankar 
250ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
251d71ae5a4SJacob Faibussowitsch {
25299e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
25394342113SStefano Zampini   PetscBool   cong;
25499e65526SBarry Smith 
25599e65526SBarry Smith   PetscFunctionBegin;
2569566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
25794342113SStefano Zampini   if (Y->assembled && cong) {
2589566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
25999e65526SBarry Smith   } else {
2609566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
26199e65526SBarry Smith   }
2623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26399e65526SBarry Smith }
26499e65526SBarry Smith 
265ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
266d71ae5a4SJacob Faibussowitsch {
267f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
268f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
269f1f41ecbSJed Brown 
270f1f41ecbSJed Brown   PetscFunctionBegin;
2710298fd71SBarry Smith   *zrows = NULL;
2729566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2739566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
274f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2759566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
277f1f41ecbSJed Brown }
278f1f41ecbSJed Brown 
279ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
280d71ae5a4SJacob Faibussowitsch {
2810716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
282a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
2830716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
2840716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
2850716a85fSBarry Smith   PetscReal         *work;
286ce496241SStefano Zampini   const PetscScalar *dummy;
2870716a85fSBarry Smith 
2880716a85fSBarry Smith   PetscFunctionBegin;
2899566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
2909566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
2919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
2929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
2939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
2949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
295857cbf51SRichard Tran Mills   if (type == NORM_2) {
296ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
297ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
298857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
299ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
300ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
301857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
302ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
303ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
304857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
305ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
306ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
307857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
308ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
309ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
310857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
311857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
3121c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3130716a85fSBarry Smith   } else {
3141c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3150716a85fSBarry Smith   }
3169566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
317857cbf51SRichard Tran Mills   if (type == NORM_2) {
318a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
319857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
320a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3210716a85fSBarry Smith   }
3223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3230716a85fSBarry Smith }
3240716a85fSBarry Smith 
325ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
326d71ae5a4SJacob Faibussowitsch {
327e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
328e52d2c62SBarry Smith   IS              sis, gis;
329e52d2c62SBarry Smith   const PetscInt *isis, *igis;
330e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
331e52d2c62SBarry Smith 
332e52d2c62SBarry Smith   PetscFunctionBegin;
3339566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3349566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3359566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3369566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3379566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3389566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
339e52d2c62SBarry Smith 
3409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3419566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3429566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
343e52d2c62SBarry Smith   n = ngis + nsis;
3449566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3459566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
346e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3479566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
348e52d2c62SBarry Smith 
3499566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3509566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3519566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3529566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
354e52d2c62SBarry Smith }
355e52d2c62SBarry Smith 
356dd6ea824SBarry Smith /*
3570f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3589e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3590f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3600f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
36172fa4726SStefano Zampini has an order N integer array but is fast to access.
3629e25ed09SBarry Smith */
363d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
364d71ae5a4SJacob Faibussowitsch {
36544a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
366d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
367dbb450caSBarry Smith 
3683a40ed3dSBarry Smith   PetscFunctionBegin;
36908401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
370aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
371eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
372c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
373b1fc9764SSatish Balay #else
3749566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
375905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
376b1fc9764SSatish Balay #endif
3773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3789e25ed09SBarry Smith }
3799e25ed09SBarry Smith 
380d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
381a8f51744SPierre Jolivet   do { \
382db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
383db4deed7SKarl Rupp     else high1 = nrow1; \
384fd3458f5SBarry Smith     lastcol1 = col; \
385fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
386fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
387fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
388fd3458f5SBarry Smith       else low1 = t; \
389ba4e3ef2SSatish Balay     } \
390fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
391fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
392fd3458f5SBarry Smith       if (rp1[_i] == col) { \
3930c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
3940c0d7e18SFande Kong           ap1[_i] += value; \
3950c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
3960c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
3979371c9d4SSatish Balay         } else ap1[_i] = value; \
39830770e4dSSatish Balay         goto a_noinsert; \
3990520107fSSatish Balay       } \
4000520107fSSatish Balay     } \
4019371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4029371c9d4SSatish Balay       low1  = 0; \
4039371c9d4SSatish Balay       high1 = nrow1; \
4049371c9d4SSatish Balay       goto a_noinsert; \
4059371c9d4SSatish Balay     } \
4069371c9d4SSatish Balay     if (nonew == 1) { \
4079371c9d4SSatish Balay       low1  = 0; \
4089371c9d4SSatish Balay       high1 = nrow1; \
4099371c9d4SSatish Balay       goto a_noinsert; \
4109371c9d4SSatish Balay     } \
41108401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
412fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4139371c9d4SSatish Balay     N = nrow1++ - 1; \
4149371c9d4SSatish Balay     a->nz++; \
4159371c9d4SSatish Balay     high1++; \
4160520107fSSatish Balay     /* shift up all the later entries in this row */ \
4179566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4189566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
419fd3458f5SBarry Smith     rp1[_i] = col; \
420fd3458f5SBarry Smith     ap1[_i] = value; \
42130770e4dSSatish Balay   a_noinsert:; \
422fd3458f5SBarry Smith     ailen[row] = nrow1; \
423a8f51744SPierre Jolivet   } while (0)
4240a198c4cSBarry Smith 
425d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
426a8f51744SPierre Jolivet   do { \
427db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
428db4deed7SKarl Rupp     else high2 = nrow2; \
429fd3458f5SBarry Smith     lastcol2 = col; \
430fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
431fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
432fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
433fd3458f5SBarry Smith       else low2 = t; \
434ba4e3ef2SSatish Balay     } \
435fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
436fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
437fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4380c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4390c0d7e18SFande Kong           ap2[_i] += value; \
4400c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4419371c9d4SSatish Balay         } else ap2[_i] = value; \
44230770e4dSSatish Balay         goto b_noinsert; \
44330770e4dSSatish Balay       } \
44430770e4dSSatish Balay     } \
4459371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4469371c9d4SSatish Balay       low2  = 0; \
4479371c9d4SSatish Balay       high2 = nrow2; \
4489371c9d4SSatish Balay       goto b_noinsert; \
4499371c9d4SSatish Balay     } \
4509371c9d4SSatish Balay     if (nonew == 1) { \
4519371c9d4SSatish Balay       low2  = 0; \
4529371c9d4SSatish Balay       high2 = nrow2; \
4539371c9d4SSatish Balay       goto b_noinsert; \
4549371c9d4SSatish Balay     } \
45508401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
456fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4579371c9d4SSatish Balay     N = nrow2++ - 1; \
4589371c9d4SSatish Balay     b->nz++; \
4599371c9d4SSatish Balay     high2++; \
46030770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4619566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4629566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
463fd3458f5SBarry Smith     rp2[_i] = col; \
464fd3458f5SBarry Smith     ap2[_i] = value; \
46530770e4dSSatish Balay   b_noinsert:; \
466fd3458f5SBarry Smith     bilen[row] = nrow2; \
467a8f51744SPierre Jolivet   } while (0)
46830770e4dSSatish Balay 
469ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
470d71ae5a4SJacob Faibussowitsch {
4712fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4722fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4732fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
474fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4752fd7e33dSBarry Smith 
4762fd7e33dSBarry Smith   PetscFunctionBegin;
4772fd7e33dSBarry Smith   /* code only works for square matrices A */
4782fd7e33dSBarry Smith 
4792fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
4809566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
4812fd7e33dSBarry Smith   row = row - diag;
4822fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
4832fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
4842fd7e33dSBarry Smith   }
485fff043a9SJunchao Zhang   if (l) {
4869566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
4879566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
4889566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
489fff043a9SJunchao Zhang   }
4902fd7e33dSBarry Smith 
4912fd7e33dSBarry Smith   /* diagonal part */
492fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
4939566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
4949566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row])));
4959566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
496fff043a9SJunchao Zhang   }
4972fd7e33dSBarry Smith 
4982fd7e33dSBarry Smith   /* right of diagonal part */
499fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5009566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5019566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5029566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
503fff043a9SJunchao Zhang   }
5043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5052fd7e33dSBarry Smith }
5062fd7e33dSBarry Smith 
507d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
508d71ae5a4SJacob Faibussowitsch {
50944a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
510071fcb05SBarry Smith   PetscScalar value = 0.0;
511d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
512d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
513ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5148a729477SBarry Smith 
5150520107fSSatish Balay   /* Some Variables required in the macro */
5164ee7247eSSatish Balay   Mat         A     = aij->A;
5174ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
51857809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
519ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
52030770e4dSSatish Balay   Mat         B                 = aij->B;
52130770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
522d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
523ce496241SStefano Zampini   MatScalar  *aa, *ba;
524fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5258d76821aSHong Zhang   PetscInt    nonew;
526a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5274ee7247eSSatish Balay 
5283a40ed3dSBarry Smith   PetscFunctionBegin;
5299566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5318a729477SBarry Smith   for (i = 0; i < m; i++) {
5325ef9f2a5SBarry Smith     if (im[i] < 0) continue;
53308401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5344b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5354b0e389bSBarry Smith       row      = im[i] - rstart;
536fd3458f5SBarry Smith       lastcol1 = -1;
5378e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5388e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
539fd3458f5SBarry Smith       rmax1    = aimax[row];
540fd3458f5SBarry Smith       nrow1    = ailen[row];
541fd3458f5SBarry Smith       low1     = 0;
542fd3458f5SBarry Smith       high1    = nrow1;
543fd3458f5SBarry Smith       lastcol2 = -1;
5448e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5458e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
546fd3458f5SBarry Smith       rmax2    = bimax[row];
547d498b1e9SBarry Smith       nrow2    = bilen[row];
548fd3458f5SBarry Smith       low2     = 0;
549fd3458f5SBarry Smith       high2    = nrow2;
550fd3458f5SBarry Smith 
5511eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
552071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
553c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
554fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
555fd3458f5SBarry Smith           col   = in[j] - cstart;
5568d76821aSHong Zhang           nonew = a->nonew;
557d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
558f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
559f7d195e4SLawrence Mitchell           continue;
560f7d195e4SLawrence Mitchell         } else {
561f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
562227d817aSBarry Smith           if (mat->was_assembled) {
56348a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
564aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
565eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
566fa46199cSSatish Balay             col--;
567b1fc9764SSatish Balay #else
568905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
569b1fc9764SSatish Balay #endif
570f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
5719566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIAIJ(mat));               /* Change aij->B from reduced/local format to expanded/global format */
5724b0e389bSBarry Smith               col = in[j];
5739bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
574f9508a3cSSatish Balay               B     = aij->B;
575f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5769371c9d4SSatish Balay               bimax = b->imax;
5779371c9d4SSatish Balay               bi    = b->i;
5789371c9d4SSatish Balay               bilen = b->ilen;
5799371c9d4SSatish Balay               bj    = b->j;
5809371c9d4SSatish Balay               ba    = b->a;
581*cff58d65SJunchao Zhang               rp2   = PetscSafePointerPlusOffset(bj, bi[row]);
582*cff58d65SJunchao Zhang               ap2   = PetscSafePointerPlusOffset(ba, bi[row]);
583d498b1e9SBarry Smith               rmax2 = bimax[row];
584d498b1e9SBarry Smith               nrow2 = bilen[row];
585d498b1e9SBarry Smith               low2  = 0;
586d498b1e9SBarry Smith               high2 = nrow2;
587d0f46423SBarry Smith               bm    = aij->B->rmap->n;
588f9508a3cSSatish Balay               ba    = b->a;
589d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
590f4f49eeaSPierre Jolivet               if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) {
5919566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
59298921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
5930587a0fcSBarry Smith             }
594c48de900SBarry Smith           } else col = in[j];
5958d76821aSHong Zhang           nonew = b->nonew;
596d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
5971eb62cbbSBarry Smith         }
5981eb62cbbSBarry Smith       }
5995ef9f2a5SBarry Smith     } else {
60028b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
60190f02eecSBarry Smith       if (!aij->donotstash) {
6025080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
603d36fbae8SSatish Balay         if (roworiented) {
6048e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
605d36fbae8SSatish Balay         } else {
6068e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6074b0e389bSBarry Smith         }
6081eb62cbbSBarry Smith       }
6098a729477SBarry Smith     }
61090f02eecSBarry Smith   }
6115519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6129566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6148a729477SBarry Smith }
6158a729477SBarry Smith 
6162b08fdbeSandi selinger /*
617904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6182b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
619904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6202b08fdbeSandi selinger */
621d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
622d71ae5a4SJacob Faibussowitsch {
623904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
624904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6254cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
626904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
627904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
628904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
629904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
630904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6316dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
632904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
633904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
634904d1e70Sandi selinger 
635904d1e70Sandi selinger   PetscFunctionBegin;
636904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
637904d1e70Sandi selinger   for (j = 0; j < am; j++) {
638904d1e70Sandi selinger     dnz = onz = 0;
639904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6406dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
641904d1e70Sandi selinger       /* If column is in the diagonal */
642904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
643904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
644904d1e70Sandi selinger         dnz++;
645904d1e70Sandi selinger       } else { /* off-diagonal entries */
646904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
647904d1e70Sandi selinger         onz++;
648904d1e70Sandi selinger       }
649904d1e70Sandi selinger     }
650904d1e70Sandi selinger     ailen[j] = dnz;
651904d1e70Sandi selinger     bilen[j] = onz;
652904d1e70Sandi selinger   }
6533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
654904d1e70Sandi selinger }
655904d1e70Sandi selinger 
656904d1e70Sandi selinger /*
657904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
658904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6591de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6601de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6611de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
662904d1e70Sandi selinger */
663d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
664d71ae5a4SJacob Faibussowitsch {
6653a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6663a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6674cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
668f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6693a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6703a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6713a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6723a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6733a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6746dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6751de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
676904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
677904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
6783a063d27Sandi selinger 
6793a063d27Sandi selinger   PetscFunctionBegin;
6803a063d27Sandi selinger   /* Iterate over all rows of the matrix */
6813a063d27Sandi selinger   for (j = 0; j < am; j++) {
682904d1e70Sandi selinger     dnz_row = onz_row = 0;
683904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
684904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
685e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
686e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
687ae8e66a0Sandi selinger       /* If column is in the diagonal */
6883a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
689904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
690904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
691904d1e70Sandi selinger         dnz_row++;
692ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
693904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
694904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
695904d1e70Sandi selinger         onz_row++;
6963a063d27Sandi selinger       }
6973a063d27Sandi selinger     }
698904d1e70Sandi selinger     ailen[j] = dnz_row;
699904d1e70Sandi selinger     bilen[j] = onz_row;
7003a063d27Sandi selinger   }
7013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7023a063d27Sandi selinger }
7033a063d27Sandi selinger 
704ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
705d71ae5a4SJacob Faibussowitsch {
706b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
707d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
708d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
709b49de8d1SLois Curfman McInnes 
7103a40ed3dSBarry Smith   PetscFunctionBegin;
711b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
71254c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
71354c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
71485835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
715b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
716b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
71754c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
71854c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
719b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
720b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7219566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
722fa852ad4SSatish Balay       } else {
72348a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
724aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
725eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
726fa46199cSSatish Balay         col--;
727b1fc9764SSatish Balay #else
728905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
729b1fc9764SSatish Balay #endif
730e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
73148a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
732b49de8d1SLois Curfman McInnes       }
733b49de8d1SLois Curfman McInnes     }
734b49de8d1SLois Curfman McInnes   }
7353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
736b49de8d1SLois Curfman McInnes }
737bc5ccf88SSatish Balay 
738ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
739d71ae5a4SJacob Faibussowitsch {
740bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
741b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
742bc5ccf88SSatish Balay 
743bc5ccf88SSatish Balay   PetscFunctionBegin;
7443ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
745bc5ccf88SSatish Balay 
7469566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7479566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7489566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
750bc5ccf88SSatish Balay }
751bc5ccf88SSatish Balay 
752d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
753d71ae5a4SJacob Faibussowitsch {
754bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
755b1d57f15SBarry Smith   PetscMPIInt  n;
756b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
757e44c0bd4SBarry Smith   PetscInt    *row, *col;
758ace3abfcSBarry Smith   PetscBool    other_disassembled;
75987828ca2SBarry Smith   PetscScalar *val;
760bc5ccf88SSatish Balay 
76191c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7626e111a19SKarl Rupp 
763bc5ccf88SSatish Balay   PetscFunctionBegin;
7644cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
765a2d1c673SSatish Balay     while (1) {
7669566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
767a2d1c673SSatish Balay       if (!flg) break;
768a2d1c673SSatish Balay 
769bc5ccf88SSatish Balay       for (i = 0; i < n;) {
770bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7712205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7722205254eSKarl Rupp           if (row[j] != rstart) break;
7732205254eSKarl Rupp         }
774bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
775bc5ccf88SSatish Balay         else ncols = n - i;
776bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7779566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
778bc5ccf88SSatish Balay         i = j;
779bc5ccf88SSatish Balay       }
780bc5ccf88SSatish Balay     }
7819566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
782bc5ccf88SSatish Balay   }
7838c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
784c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
7859ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
7869ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
7879566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
7889566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
7899ecce9b1SRichard Tran Mills   }
790e2cf4d64SStefano Zampini #endif
7919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
7929566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
793bc5ccf88SSatish Balay 
794bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
795071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
796bc5ccf88SSatish Balay   /*
797bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
798bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
799bc5ccf88SSatish Balay   */
800bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
8015f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
80235cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
8039566063dSJacob Faibussowitsch       PetscCall(MatDisAssemble_MPIAIJ(mat));
804ad59fb31SSatish Balay     }
805ad59fb31SSatish Balay   }
80648a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8079566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8088c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
809c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
810e2cf4d64SStefano Zampini #endif
8119566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
813bc5ccf88SSatish Balay 
8149566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8152205254eSKarl Rupp 
816f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
817a30b2313SHong Zhang 
8189566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
819e56f5c9eSBarry Smith 
8204f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
821f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
822e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
8231c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
824e56f5c9eSBarry Smith   }
8258c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
826c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
827e2cf4d64SStefano Zampini #endif
8283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
829bc5ccf88SSatish Balay }
830bc5ccf88SSatish Balay 
831ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
832d71ae5a4SJacob Faibussowitsch {
83344a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8343a40ed3dSBarry Smith 
8353a40ed3dSBarry Smith   PetscFunctionBegin;
8369566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8379566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8391eb62cbbSBarry Smith }
8401eb62cbbSBarry Smith 
841ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
842d71ae5a4SJacob Faibussowitsch {
8431b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8441b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8456e520ac8SStefano Zampini   PetscInt    r, len;
8469939a2d1SBarry Smith   PetscBool   cong;
8471eb62cbbSBarry Smith 
8483a40ed3dSBarry Smith   PetscFunctionBegin;
8496e520ac8SStefano Zampini   /* get locally owned rows */
8509566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8519566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
852dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
85397b48c8fSBarry Smith   if (x && b) {
8541b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8551b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8561b1dd7adSMatthew G. Knepley 
85728b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8589566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8599566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8601b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8619566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8629566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
86397b48c8fSBarry Smith   }
864a92ad425SStefano Zampini 
865a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8669566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8679566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
868a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
869a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
870a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
871a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
872a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
873a92ad425SStefano Zampini 
874a92ad425SStefano Zampini     nnwA = aijA->nonew;
875a92ad425SStefano Zampini     nnwB = aijB->nonew;
876a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
877a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
878a92ad425SStefano Zampini     if (!nnzA) {
8799566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
880a92ad425SStefano Zampini       aijA->nonew = 0;
881a92ad425SStefano Zampini     }
882a92ad425SStefano Zampini     if (!nnzB) {
8839566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
884a92ad425SStefano Zampini       aijB->nonew = 0;
885a92ad425SStefano Zampini     }
886a92ad425SStefano Zampini     /* Must zero here before the next loop */
8879566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
8889566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
8891b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
8901b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
891a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
8929566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
893e2d53e46SBarry Smith     }
894a92ad425SStefano Zampini     aijA->nonew = nnwA;
895a92ad425SStefano Zampini     aijB->nonew = nnwB;
8966eb55b6aSBarry Smith   } else {
8979566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
8989566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
8996eb55b6aSBarry Smith   }
9009566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9019566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9029566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9034f9cfa9eSBarry Smith 
9049939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
905f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9069939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
9079939a2d1SBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9089939a2d1SBarry Smith   }
9093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9101eb62cbbSBarry Smith }
9111eb62cbbSBarry Smith 
912ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
913d71ae5a4SJacob Faibussowitsch {
9149c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9155ba17502SJed Brown   PetscMPIInt        n = A->rmap->n;
916131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
91754bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
918131c27b5Sprj-   PetscMPIInt        p = 0;
91954bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
92054bd4135SMatthew G. Knepley   PetscSF            sf;
9219c7c4993SBarry Smith   const PetscScalar *xx;
922fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
923564f14d6SBarry Smith   Vec                xmask, lmask;
924564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
925564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
926564f14d6SBarry Smith   PetscScalar       *aa;
9279c7c4993SBarry Smith 
9289c7c4993SBarry Smith   PetscFunctionBegin;
92954bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
93154bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
93354bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
93454bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
935aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9365ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9379566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9385ba17502SJed Brown     }
93954bd4135SMatthew G. Knepley     rrows[r].rank  = p;
94054bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9419c7c4993SBarry Smith   }
9429566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9439566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
94454bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9459566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9469566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9479566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
94854bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9499371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9509371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
951564f14d6SBarry Smith   /* zero diagonal part of matrix */
9529566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9534cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9549566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9559566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9569566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
95754bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9599566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9609566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9619566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
962a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
963a92ad425SStefano Zampini     PetscBool cong;
964a92ad425SStefano Zampini 
9659566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
96628b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9679566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9689566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9699566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9709566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
971377aa5a1SBarry Smith   }
9729566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9734cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9749566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
975564f14d6SBarry Smith   ii = aij->i;
9768e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
977564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
978564f14d6SBarry Smith   if (aij->compressedrow.use) {
979564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
980564f14d6SBarry Smith     ii   = aij->compressedrow.i;
981564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
982564f14d6SBarry Smith     for (i = 0; i < m; i++) {
983564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
984564f14d6SBarry Smith       aj = aij->j + ii[i];
985fff043a9SJunchao Zhang       aa = aij_a + ii[i];
986564f14d6SBarry Smith 
987564f14d6SBarry Smith       for (j = 0; j < n; j++) {
98825266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
989377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
990564f14d6SBarry Smith           *aa = 0.0;
991564f14d6SBarry Smith         }
992564f14d6SBarry Smith         aa++;
993564f14d6SBarry Smith         aj++;
994564f14d6SBarry Smith       }
995564f14d6SBarry Smith       ridx++;
996564f14d6SBarry Smith     }
997564f14d6SBarry Smith   } else { /* do not use compressed row format */
998564f14d6SBarry Smith     m = l->B->rmap->n;
999564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1000564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1001564f14d6SBarry Smith       aj = aij->j + ii[i];
1002fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1003564f14d6SBarry Smith       for (j = 0; j < n; j++) {
100425266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1005377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1006564f14d6SBarry Smith           *aa = 0.0;
1007564f14d6SBarry Smith         }
1008564f14d6SBarry Smith         aa++;
1009564f14d6SBarry Smith         aj++;
1010564f14d6SBarry Smith       }
1011564f14d6SBarry Smith     }
1012564f14d6SBarry Smith   }
1013a92ad425SStefano Zampini   if (x && b) {
10149566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10159566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1016377aa5a1SBarry Smith   }
10179566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10189566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10199566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10209566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10214f9cfa9eSBarry Smith 
10224f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1023f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10244f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
10251c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10264f9cfa9eSBarry Smith   }
10273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10289c7c4993SBarry Smith }
10299c7c4993SBarry Smith 
1030ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1031d71ae5a4SJacob Faibussowitsch {
1032416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1033b1d57f15SBarry Smith   PetscInt    nt;
103419b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1035416022c9SBarry Smith 
10363a40ed3dSBarry Smith   PetscFunctionBegin;
10379566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
103808401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10399566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1040296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10419566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1042296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10441eb62cbbSBarry Smith }
10451eb62cbbSBarry Smith 
1046ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1047d71ae5a4SJacob Faibussowitsch {
1048bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1049bd0c2dcbSBarry Smith 
1050bd0c2dcbSBarry Smith   PetscFunctionBegin;
10519566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1053bd0c2dcbSBarry Smith }
1054bd0c2dcbSBarry Smith 
1055ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1056d71ae5a4SJacob Faibussowitsch {
1057416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
105801ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10593a40ed3dSBarry Smith 
10603a40ed3dSBarry Smith   PetscFunctionBegin;
10619566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10629566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10639566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10649566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1066da3a660dSBarry Smith }
1067da3a660dSBarry Smith 
1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1069d71ae5a4SJacob Faibussowitsch {
1070416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1071da3a660dSBarry Smith 
10723a40ed3dSBarry Smith   PetscFunctionBegin;
1073da3a660dSBarry Smith   /* do nondiagonal part */
10749566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1075da3a660dSBarry Smith   /* do local part */
10769566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10779613dc34SJunchao Zhang   /* add partial results together */
10789566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10799566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1081da3a660dSBarry Smith }
1082da3a660dSBarry Smith 
1083ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1084d71ae5a4SJacob Faibussowitsch {
10854f423910Svictorle   MPI_Comm    comm;
1086ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1087ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1088cd0d46ebSvictorle   IS          Me, Notme;
1089b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
109054d735aeSStefano Zampini   PetscBool   lf;
1091b1d57f15SBarry Smith   PetscMPIInt size;
1092cd0d46ebSvictorle 
1093cd0d46ebSvictorle   PetscFunctionBegin;
109442e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
10959566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
10961c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
10973ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
10989566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
10999566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11003ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
110142e5f5b4Svictorle 
11027dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11039566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11049566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1106cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1107cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11089566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11099566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11109566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
111166501d38Svictorle   Aoff = Aoffs[0];
11129566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
111366501d38Svictorle   Boff = Boffs[0];
11149566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11159566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11169566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11179566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11189566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11199566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1121cd0d46ebSvictorle }
1122cd0d46ebSvictorle 
1123ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1124d71ae5a4SJacob Faibussowitsch {
1125416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1126da3a660dSBarry Smith 
11273a40ed3dSBarry Smith   PetscFunctionBegin;
1128da3a660dSBarry Smith   /* do nondiagonal part */
11299566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1130da3a660dSBarry Smith   /* do local part */
11319566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11329613dc34SJunchao Zhang   /* add partial results together */
11339566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11349566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1136da3a660dSBarry Smith }
1137da3a660dSBarry Smith 
11381eb62cbbSBarry Smith /*
11391eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11401eb62cbbSBarry Smith    diagonal block
11411eb62cbbSBarry Smith */
1142ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1143d71ae5a4SJacob Faibussowitsch {
1144416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11453a40ed3dSBarry Smith 
11463a40ed3dSBarry Smith   PetscFunctionBegin;
114708401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1148aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11499566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11511eb62cbbSBarry Smith }
11521eb62cbbSBarry Smith 
1153ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1154d71ae5a4SJacob Faibussowitsch {
1155052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11563a40ed3dSBarry Smith 
11573a40ed3dSBarry Smith   PetscFunctionBegin;
11589566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11599566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1161052efed2SBarry Smith }
1162052efed2SBarry Smith 
1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1164d71ae5a4SJacob Faibussowitsch {
11658e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11668e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11678e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11683ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11692e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
117017a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
117117a3732bSBarry Smith   PetscInt64         nz, hnz;
11723ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11733ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11743ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
117517a3732bSBarry Smith   PetscMPIInt        rank;
11768e2fed03SBarry Smith 
11778e2fed03SBarry Smith   PetscFunctionBegin;
11789566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
11793ea6fe3dSLisandro Dalcin 
11803ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
11813ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
11823ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
11833ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
11843ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
11858e2fed03SBarry Smith   nz = A->nz + B->nz;
11863ea6fe3dSLisandro Dalcin 
11873ea6fe3dSLisandro Dalcin   /* write matrix header */
11880700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
11899371c9d4SSatish Balay   header[1] = M;
11909371c9d4SSatish Balay   header[2] = N;
119117a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
119217a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
119338b83642SBarry Smith   if (rank == 0) {
119438b83642SBarry Smith     if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT;
119538b83642SBarry Smith     else header[3] = (PetscInt)hnz;
119638b83642SBarry Smith   }
11979566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
11988e2fed03SBarry Smith 
11993ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12013ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12029566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12039566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12048e2fed03SBarry Smith 
12053ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12069566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12073ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12083ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12093ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12103ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12118e2fed03SBarry Smith     }
12129371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12139371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12148e2fed03SBarry Smith   }
121517a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12169566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12179566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12188e2fed03SBarry Smith 
12193ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12209566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12219566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12233ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12243ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12253ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12262e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12278e2fed03SBarry Smith     }
12289371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12299371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12308e2fed03SBarry Smith   }
12319566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12329566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
123317a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12349566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12359566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12368e2fed03SBarry Smith 
12373ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12389566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12408e2fed03SBarry Smith }
12418e2fed03SBarry Smith 
12429804daf3SBarry Smith #include <petscdraw.h>
1243ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1244d71ae5a4SJacob Faibussowitsch {
124544a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
124632dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1247ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1248b0a32e0cSBarry Smith   PetscViewer       sviewer;
1249f3ef73ceSBarry Smith   PetscViewerFormat format;
1250416022c9SBarry Smith 
12513a40ed3dSBarry Smith   PetscFunctionBegin;
12529566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12539566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12549566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
125532077d6dSBarry Smith   if (iascii) {
12569566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1257ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
1258f4f49eeaSPierre Jolivet       PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12599566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12609566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1261ef5fdb51SBarry Smith       for (i = 0; i < (PetscInt)size; i++) {
1262ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1263ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1264ef5fdb51SBarry Smith         navg += nz[i];
1265ef5fdb51SBarry Smith       }
12669566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1267ef5fdb51SBarry Smith       navg = navg / size;
12689566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12693ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1270ef5fdb51SBarry Smith     }
12719566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1272456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12734e220ebcSLois Curfman McInnes       MatInfo   info;
12746335e310SSatish Balay       PetscInt *inodes = NULL;
1275923f20ffSKris Buschelman 
12769566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12779566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12789566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12799566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1280923f20ffSKris Buschelman       if (!inodes) {
12819371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12829371c9d4SSatish Balay                                                      (double)info.memory));
12836831982aSBarry Smith       } else {
12849371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12859371c9d4SSatish Balay                                                      (double)info.memory));
12866831982aSBarry Smith       }
12879566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
12889566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
12899566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
12909566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
12919566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
12929566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
12939566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
12949566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
12953ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1296fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1297923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
12989566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1299923f20ffSKris Buschelman       if (inodes) {
13009566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1301d38fa0fbSBarry Smith       } else {
13029566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1303d38fa0fbSBarry Smith       }
13043ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13054aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13063ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
130708480c60SBarry Smith     }
13088e2fed03SBarry Smith   } else if (isbinary) {
13098e2fed03SBarry Smith     if (size == 1) {
13109566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13119566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13128e2fed03SBarry Smith     } else {
13139566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13148e2fed03SBarry Smith     }
13153ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
131671e56450SStefano Zampini   } else if (iascii && size == 1) {
13179566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13189566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13193ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13200f5bd95cSBarry Smith   } else if (isdraw) {
1321b0a32e0cSBarry Smith     PetscDraw draw;
1322ace3abfcSBarry Smith     PetscBool isnull;
13239566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13249566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13253ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
132619bcc07fSBarry Smith   }
132719bcc07fSBarry Smith 
132871e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
132971e56450SStefano Zampini     Mat A = NULL, Av;
133071e56450SStefano Zampini     IS  isrow, iscol;
13312ee70a88SLois Curfman McInnes 
13329566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13339566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13349566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13359566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
133671e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
133771e56450SStefano Zampini     /*
133871e56450SStefano Zampini     Mat *AA, A = NULL, Av;
133971e56450SStefano Zampini     IS  isrow,iscol;
134071e56450SStefano Zampini 
13419566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13429566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13439566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1344dd400576SPatrick Sanan     if (rank == 0) {
13459566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
134671e56450SStefano Zampini        A    = AA[0];
134771e56450SStefano Zampini        Av   = AA[0];
134895373324SBarry Smith     }
13499566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
135071e56450SStefano Zampini */
13519566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13529566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
135355843e3eSBarry Smith     /*
135455843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1355b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
135655843e3eSBarry Smith     */
13579566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1358dd400576SPatrick Sanan     if (rank == 0) {
135948a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13609566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
136195373324SBarry Smith     }
13629566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13639566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
136495373324SBarry Smith   }
13653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13661eb62cbbSBarry Smith }
13671eb62cbbSBarry Smith 
1368d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1369d71ae5a4SJacob Faibussowitsch {
1370ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1371416022c9SBarry Smith 
13723a40ed3dSBarry Smith   PetscFunctionBegin;
13739566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13749566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13759566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13769566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
137748a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1379416022c9SBarry Smith }
1380416022c9SBarry Smith 
1381ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1382d71ae5a4SJacob Faibussowitsch {
138344a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1384f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1385ace3abfcSBarry Smith   PetscBool   hasop;
13868a729477SBarry Smith 
13873a40ed3dSBarry Smith   PetscFunctionBegin;
1388a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
13899566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
13903ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1391a2b30743SBarry Smith   }
1392a2b30743SBarry Smith 
139348a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
13944e980039SJed Brown 
1395c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1396da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
13979566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
13982798e883SHong Zhang       its--;
1399da3a660dSBarry Smith     }
14002798e883SHong Zhang 
14012798e883SHong Zhang     while (its--) {
14029566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14039566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14042798e883SHong Zhang 
1405c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14069566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14079566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14082798e883SHong Zhang 
1409c14dc6b6SHong Zhang       /* local sweep */
14109566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14112798e883SHong Zhang     }
14123a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1413da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14149566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14152798e883SHong Zhang       its--;
1416da3a660dSBarry Smith     }
14172798e883SHong Zhang     while (its--) {
14189566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14199566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14202798e883SHong Zhang 
1421c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14229566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14239566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1424c14dc6b6SHong Zhang 
1425c14dc6b6SHong Zhang       /* local sweep */
14269566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14272798e883SHong Zhang     }
14283a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1429da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14309566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14312798e883SHong Zhang       its--;
1432da3a660dSBarry Smith     }
14332798e883SHong Zhang     while (its--) {
14349566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14359566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14362798e883SHong Zhang 
1437c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14389566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14399566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14402798e883SHong Zhang 
1441c14dc6b6SHong Zhang       /* local sweep */
14429566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14432798e883SHong Zhang     }
1444a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1445a7420bb7SBarry Smith     Vec xx1;
1446a7420bb7SBarry Smith 
14479566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14489566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1449a7420bb7SBarry Smith 
14509566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14519566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1452a7420bb7SBarry Smith     if (!mat->diag) {
14539566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14549566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1455a7420bb7SBarry Smith     }
14569566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1457bd0c2dcbSBarry Smith     if (hasop) {
14589566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1459bd0c2dcbSBarry Smith     } else {
14609566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1461bd0c2dcbSBarry Smith     }
14629566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1463887ee2caSBarry Smith 
14649566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1465a7420bb7SBarry Smith 
1466a7420bb7SBarry Smith     /* local sweep */
14679566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14689566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14699566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1470ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1471c14dc6b6SHong Zhang 
14729566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1473a0808db4SHong Zhang 
14747b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14768a729477SBarry Smith }
1477a66be287SLois Curfman McInnes 
1478ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1479d71ae5a4SJacob Faibussowitsch {
148072e6a0cfSJed Brown   Mat             aA, aB, Aperm;
148172e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
148272e6a0cfSJed Brown   PetscScalar    *aa, *ba;
148372e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
148472e6a0cfSJed Brown   PetscSF         rowsf, sf;
14850298fd71SBarry Smith   IS              parcolp = NULL;
148672e6a0cfSJed Brown   PetscBool       done;
148742e855d1Svictor 
148842e855d1Svictor   PetscFunctionBegin;
14899566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
14909566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
14919566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
14929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
149372e6a0cfSJed Brown 
149472e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
14959566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
14969566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
14979566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
149872e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
14999566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15009566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
150172e6a0cfSJed Brown 
150272e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15039566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15049566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15059566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
150672e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15079566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15089566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15099566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
151072e6a0cfSJed Brown 
15119566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15129566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15139566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
151472e6a0cfSJed Brown 
151572e6a0cfSJed Brown   /* Find out where my gcols should go */
15169566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15199566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15209566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15219566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152472e6a0cfSJed Brown 
15259566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15269566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15279566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
152872e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1529131c27b5Sprj-     PetscInt    row = rdest[i];
1530131c27b5Sprj-     PetscMPIInt rowner;
15319566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
153272e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1533131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1534131c27b5Sprj-       PetscMPIInt cowner;
15359566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
153672e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
153772e6a0cfSJed Brown       else onnz[i]++;
153872e6a0cfSJed Brown     }
153972e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1540131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1541131c27b5Sprj-       PetscMPIInt cowner;
15429566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
154372e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
154472e6a0cfSJed Brown       else onnz[i]++;
154572e6a0cfSJed Brown     }
154672e6a0cfSJed Brown   }
15479566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15489566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15499566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15509566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15519566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
155272e6a0cfSJed Brown 
15539566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15549566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15559566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
155672e6a0cfSJed Brown   for (i = 0; i < m; i++) {
155772e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1558970468b0SJed Brown     PetscInt  j0, rowlen;
155972e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1560970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1561970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15629566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1563970468b0SJed Brown     }
156472e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1565970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1566970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15679566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1568970468b0SJed Brown     }
156972e6a0cfSJed Brown   }
15709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15729566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15739566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15749566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15759566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15769566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15779566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15789566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15799566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
158072e6a0cfSJed Brown   *B = Aperm;
15813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
158242e855d1Svictor }
158342e855d1Svictor 
1584ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1585d71ae5a4SJacob Faibussowitsch {
1586c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1587c5e4d11fSDmitry Karpeev 
1588c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
15899566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1590c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
15913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1592c5e4d11fSDmitry Karpeev }
1593c5e4d11fSDmitry Karpeev 
1594ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1595d71ae5a4SJacob Faibussowitsch {
1596a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1597a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
15983966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1599a66be287SLois Curfman McInnes 
16003a40ed3dSBarry Smith   PetscFunctionBegin;
16014e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16029566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16032205254eSKarl Rupp 
16049371c9d4SSatish Balay   isend[0] = info->nz_used;
16059371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16069371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16079371c9d4SSatish Balay   isend[3] = info->memory;
16089371c9d4SSatish Balay   isend[4] = info->mallocs;
16092205254eSKarl Rupp 
16109566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16112205254eSKarl Rupp 
16129371c9d4SSatish Balay   isend[0] += info->nz_used;
16139371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16149371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16159371c9d4SSatish Balay   isend[3] += info->memory;
16169371c9d4SSatish Balay   isend[4] += info->mallocs;
1617a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16184e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16194e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16204e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16214e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16224e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1623a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
16241c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16252205254eSKarl Rupp 
16264e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16274e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16284e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16294e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16304e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1631a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
16321c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16332205254eSKarl Rupp 
16344e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16354e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16364e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16374e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16384e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1639a66be287SLois Curfman McInnes   }
16404e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16414e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16424e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1644a66be287SLois Curfman McInnes }
1645a66be287SLois Curfman McInnes 
1646d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1647d71ae5a4SJacob Faibussowitsch {
1648c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1649c74985f6SBarry Smith 
16503a40ed3dSBarry Smith   PetscFunctionBegin;
165112c028f9SKris Buschelman   switch (op) {
1652512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
165312c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
165428b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1655a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
165612c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16570ad02fcaSStefano Zampini   case MAT_USE_INODES:
165812c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16591a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1660fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16619566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16629566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
166312c028f9SKris Buschelman     break;
166412c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
166543674050SBarry Smith     MatCheckPreallocated(A, 1);
16664e0d8c25SBarry Smith     a->roworiented = flg;
16672205254eSKarl Rupp 
16689566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16699566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
167012c028f9SKris Buschelman     break;
16718c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1672d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1673d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1674d71ae5a4SJacob Faibussowitsch     break;
1675d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1676d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1677d71ae5a4SJacob Faibussowitsch     break;
1678c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1679ffa07934SHong Zhang   case MAT_SPD:
168077e54ba9SKris Buschelman   case MAT_SYMMETRIC:
168177e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1682bf108f30SBarry Smith   case MAT_HERMITIAN:
1683bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1684b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1685b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1686b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
168777e54ba9SKris Buschelman     break;
1688d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1689d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1690d71ae5a4SJacob Faibussowitsch     break;
1691957cac9fSHong Zhang   case MAT_STRUCTURE_ONLY:
1692957cac9fSHong Zhang     /* The option is handled directly by MatSetOption() */
1693957cac9fSHong Zhang     break;
1694d71ae5a4SJacob Faibussowitsch   default:
1695d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
16963a40ed3dSBarry Smith   }
16973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1698c74985f6SBarry Smith }
1699c74985f6SBarry Smith 
1700d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1701d71ae5a4SJacob Faibussowitsch {
1702154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
170387828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1704d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1705d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1706b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
170739e00950SLois Curfman McInnes 
17083a40ed3dSBarry Smith   PetscFunctionBegin;
170928b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17107a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17117a0afa10SBarry Smith 
171270f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17137a0afa10SBarry Smith     /*
17147a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17157a0afa10SBarry Smith     */
17167a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1717b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1718d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17197a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17202205254eSKarl Rupp       if (max < tmp) max = tmp;
17217a0afa10SBarry Smith     }
17229566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17237a0afa10SBarry Smith   }
17247a0afa10SBarry Smith 
1725aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1726abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
172739e00950SLois Curfman McInnes 
17289371c9d4SSatish Balay   pvA = &vworkA;
17299371c9d4SSatish Balay   pcA = &cworkA;
17309371c9d4SSatish Balay   pvB = &vworkB;
17319371c9d4SSatish Balay   pcB = &cworkB;
17329371c9d4SSatish Balay   if (!v) {
17339371c9d4SSatish Balay     pvA = NULL;
17349371c9d4SSatish Balay     pvB = NULL;
17359371c9d4SSatish Balay   }
17369371c9d4SSatish Balay   if (!idx) {
17379371c9d4SSatish Balay     pcA = NULL;
17389371c9d4SSatish Balay     if (!v) pcB = NULL;
17399371c9d4SSatish Balay   }
17409566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17419566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1742154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1743154123eaSLois Curfman McInnes 
174470f0671dSBarry Smith   cmap = mat->garray;
1745154123eaSLois Curfman McInnes   if (v || idx) {
1746154123eaSLois Curfman McInnes     if (nztot) {
1747154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1748b1d57f15SBarry Smith       PetscInt imark = -1;
1749154123eaSLois Curfman McInnes       if (v) {
175070f0671dSBarry Smith         *v = v_p = mat->rowvalues;
175139e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
175270f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1753154123eaSLois Curfman McInnes           else break;
1754154123eaSLois Curfman McInnes         }
1755154123eaSLois Curfman McInnes         imark = i;
175670f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
175770f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1758154123eaSLois Curfman McInnes       }
1759154123eaSLois Curfman McInnes       if (idx) {
176070f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
176170f0671dSBarry Smith         if (imark > -1) {
1762ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
176370f0671dSBarry Smith         } else {
1764154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
176570f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1766154123eaSLois Curfman McInnes             else break;
1767154123eaSLois Curfman McInnes           }
1768154123eaSLois Curfman McInnes           imark = i;
176970f0671dSBarry Smith         }
177070f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
177170f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
177239e00950SLois Curfman McInnes       }
17733f97c4b0SBarry Smith     } else {
1774f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1775f4259b30SLisandro Dalcin       if (v) *v = NULL;
17761ca473b0SSatish Balay     }
1777154123eaSLois Curfman McInnes   }
177839e00950SLois Curfman McInnes   *nz = nztot;
17799566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17809566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
178239e00950SLois Curfman McInnes }
178339e00950SLois Curfman McInnes 
1784d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1785d71ae5a4SJacob Faibussowitsch {
17867a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
17873a40ed3dSBarry Smith 
17883a40ed3dSBarry Smith   PetscFunctionBegin;
178928b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
17907a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
17913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179239e00950SLois Curfman McInnes }
179339e00950SLois Curfman McInnes 
1794ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1795d71ae5a4SJacob Faibussowitsch {
1796855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1797ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1798d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1799329f5518SBarry Smith   PetscReal        sum = 0.0;
1800fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
180104ca555eSLois Curfman McInnes 
18023a40ed3dSBarry Smith   PetscFunctionBegin;
180317699dbbSLois Curfman McInnes   if (aij->size == 1) {
18049566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
180537fa93a5SLois Curfman McInnes   } else {
18069566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18079566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
180804ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1809fff043a9SJunchao Zhang       v = amata;
181004ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18119371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18129371c9d4SSatish Balay         v++;
181304ca555eSLois Curfman McInnes       }
1814fff043a9SJunchao Zhang       v = bmata;
181504ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18169371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18179371c9d4SSatish Balay         v++;
181804ca555eSLois Curfman McInnes       }
18191c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18208f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18219566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18223a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1823329f5518SBarry Smith       PetscReal *tmp, *tmp2;
1824b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18259566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
18269566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2));
182704ca555eSLois Curfman McInnes       *norm = 0.0;
18289371c9d4SSatish Balay       v     = amata;
18299371c9d4SSatish Balay       jj    = amat->j;
183004ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18319371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18329371c9d4SSatish Balay         v++;
183304ca555eSLois Curfman McInnes       }
18349371c9d4SSatish Balay       v  = bmata;
18359371c9d4SSatish Balay       jj = bmat->j;
183604ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18379371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18389371c9d4SSatish Balay         v++;
183904ca555eSLois Curfman McInnes       }
18401c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1841d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
184204ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
184304ca555eSLois Curfman McInnes       }
18449566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18459566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
18469566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18473a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1848329f5518SBarry Smith       PetscReal ntemp = 0.0;
1849d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18508e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
185104ca555eSLois Curfman McInnes         sum = 0.0;
185204ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18539371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18549371c9d4SSatish Balay           v++;
185504ca555eSLois Curfman McInnes         }
18568e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
185704ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18589371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18599371c9d4SSatish Balay           v++;
186004ca555eSLois Curfman McInnes         }
1861515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
186204ca555eSLois Curfman McInnes       }
18631c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18649566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1865ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18669566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18679566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
186837fa93a5SLois Curfman McInnes   }
18693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1870855ac2c5SLois Curfman McInnes }
1871855ac2c5SLois Curfman McInnes 
1872ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1873d71ae5a4SJacob Faibussowitsch {
1874a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1875a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1876071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1877071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1878a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1879ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1880b7c46309SBarry Smith 
18813a40ed3dSBarry Smith   PetscFunctionBegin;
18827fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18839371c9d4SSatish Balay   ma = A->rmap->n;
18849371c9d4SSatish Balay   na = A->cmap->n;
18859371c9d4SSatish Balay   mb = a->B->rmap->n;
18869371c9d4SSatish Balay   nb = a->B->cmap->n;
18879371c9d4SSatish Balay   ai = Aloc->i;
18889371c9d4SSatish Balay   aj = Aloc->j;
18899371c9d4SSatish Balay   bi = Bloc->i;
18909371c9d4SSatish Balay   bj = Bloc->j;
1891fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
189280bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
189380bcc5a1SJed Brown     PetscSFNode         *oloc;
1894713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
189580bcc5a1SJed Brown 
18969566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
189780bcc5a1SJed Brown     /* compute d_nnz for preallocation */
18989566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1899cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
190080bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19019566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
190280bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
190380bcc5a1SJed Brown     /* map those to global */
19049566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19059566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19069566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19079566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
190857168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
190957168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19109566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1911d4bb536fSBarry Smith 
19129566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19139566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
19149566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs)));
19159566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19169566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19179566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1918fc4dec0aSBarry Smith   } else {
1919fc4dec0aSBarry Smith     B = *matout;
19209566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1921fc4dec0aSBarry Smith   }
1922b7c46309SBarry Smith 
1923f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1924a8661f62Sandi selinger   A_diag      = a->A;
1925a8661f62Sandi selinger   B_diag      = &b->A;
1926a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1927a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1928a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1929a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1930f79cb1a0Sandi selinger 
1931f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1932ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1933f79cb1a0Sandi selinger 
19344cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1935a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19367fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19379566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1938f79cb1a0Sandi selinger 
1939b7c46309SBarry Smith   /* copy over the B part */
19409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19419566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1942ce496241SStefano Zampini   pbv = bv;
1943d0f46423SBarry Smith   row = A->rmap->rstart;
19442205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
194561a2fbbaSHong Zhang   cols_tmp = cols;
1946da668accSHong Zhang   for (i = 0; i < mb; i++) {
1947da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19489566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19492205254eSKarl Rupp     row++;
1950720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1951720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1952b7c46309SBarry Smith   }
19539566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19549566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1955fc73b1b3SBarry Smith 
19569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19579566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1958cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19590de55854SLois Curfman McInnes     *matout = B;
19600de55854SLois Curfman McInnes   } else {
19619566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19620de55854SLois Curfman McInnes   }
19633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1964b7c46309SBarry Smith }
1965b7c46309SBarry Smith 
1966ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1967d71ae5a4SJacob Faibussowitsch {
19684b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19694b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1970b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1971a008b906SSatish Balay 
19723a40ed3dSBarry Smith   PetscFunctionBegin;
19739566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19744b967eb1SSatish Balay   if (rr) {
19759566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
197608401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19774b967eb1SSatish Balay     /* Overlap communication with computation. */
19789566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1979a008b906SSatish Balay   }
19804b967eb1SSatish Balay   if (ll) {
19819566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
198208401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1983dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19844b967eb1SSatish Balay   }
19854b967eb1SSatish Balay   /* scale  the diagonal block */
1986dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19874b967eb1SSatish Balay 
19884b967eb1SSatish Balay   if (rr) {
19894b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
19909566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1991dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
19924b967eb1SSatish Balay   }
19933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1994a008b906SSatish Balay }
1995a008b906SSatish Balay 
1996ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
1997d71ae5a4SJacob Faibussowitsch {
1998bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
19993a40ed3dSBarry Smith 
20003a40ed3dSBarry Smith   PetscFunctionBegin;
20019566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2003bb5a7306SBarry Smith }
2004bb5a7306SBarry Smith 
2005ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2006d71ae5a4SJacob Faibussowitsch {
2007d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2008d4bb536fSBarry Smith   Mat         a, b, c, d;
2009ace3abfcSBarry Smith   PetscBool   flg;
2010d4bb536fSBarry Smith 
20113a40ed3dSBarry Smith   PetscFunctionBegin;
20129371c9d4SSatish Balay   a = matA->A;
20139371c9d4SSatish Balay   b = matA->B;
20149371c9d4SSatish Balay   c = matB->A;
20159371c9d4SSatish Balay   d = matB->B;
2016d4bb536fSBarry Smith 
20179566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
201848a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
20191c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2021d4bb536fSBarry Smith }
2022d4bb536fSBarry Smith 
2023ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2024d71ae5a4SJacob Faibussowitsch {
2025cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2026cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2027cb5b572fSBarry Smith 
2028cb5b572fSBarry Smith   PetscFunctionBegin;
202933f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
203033f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2031cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2032cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2033cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2034cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2035cb5b572fSBarry Smith        then copying the submatrices */
20369566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2037cb5b572fSBarry Smith   } else {
20389566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20399566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2040cb5b572fSBarry Smith   }
20419566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2043cb5b572fSBarry Smith }
2044cb5b572fSBarry Smith 
2045001ddc4fSHong Zhang /*
2046001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2047001ddc4fSHong Zhang    have different nonzero structure.
2048001ddc4fSHong Zhang */
2049d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2050d71ae5a4SJacob Faibussowitsch {
2051001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
205295b7e79eSJed Brown 
205395b7e79eSJed Brown   PetscFunctionBegin;
205495b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
205595b7e79eSJed Brown   for (i = 0; i < m; i++) {
20568e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2057001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2058001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
205995b7e79eSJed Brown     nnz[i] = 0;
206095b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2061001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2062001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
206395b7e79eSJed Brown       nnz[i]++;
206495b7e79eSJed Brown     }
206595b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
206695b7e79eSJed Brown   }
20673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
206895b7e79eSJed Brown }
206995b7e79eSJed Brown 
2070001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2071d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2072d71ae5a4SJacob Faibussowitsch {
2073001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2074001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2075001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2076001ddc4fSHong Zhang 
2077001ddc4fSHong Zhang   PetscFunctionBegin;
20789566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2080001ddc4fSHong Zhang }
2081001ddc4fSHong Zhang 
2082ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2083d71ae5a4SJacob Faibussowitsch {
2084ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2085ac90fabeSBarry Smith 
2086ac90fabeSBarry Smith   PetscFunctionBegin;
2087ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
20889566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
20899566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2090ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
20919566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2092ac90fabeSBarry Smith   } else {
20939f5f6813SShri Abhyankar     Mat       B;
20949f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2095d9d719b4SStefano Zampini 
20969566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
20979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
20989566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
20999566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21009566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21019566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21029566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21039566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21049566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21059566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21069566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21079566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21089566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2109ac90fabeSBarry Smith   }
21103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2111ac90fabeSBarry Smith }
2112ac90fabeSBarry Smith 
21132726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2114354c94deSBarry Smith 
2115ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2116d71ae5a4SJacob Faibussowitsch {
21175f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21185f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2119354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2120354c94deSBarry Smith 
21219566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21229566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21235f80ce2aSJacob Faibussowitsch   }
21243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2125354c94deSBarry Smith }
2126354c94deSBarry Smith 
2127ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2128d71ae5a4SJacob Faibussowitsch {
212999cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
213099cafbc1SBarry Smith 
213199cafbc1SBarry Smith   PetscFunctionBegin;
21329566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21339566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
213599cafbc1SBarry Smith }
213699cafbc1SBarry Smith 
2137ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2138d71ae5a4SJacob Faibussowitsch {
213999cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214099cafbc1SBarry Smith 
214199cafbc1SBarry Smith   PetscFunctionBegin;
21429566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21439566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214599cafbc1SBarry Smith }
214699cafbc1SBarry Smith 
2147ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2148d71ae5a4SJacob Faibussowitsch {
2149c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2150475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
2151475b8b61SHong Zhang   PetscScalar       *va, *vv;
2152475b8b61SHong Zhang   Vec                vB, vA;
2153475b8b61SHong Zhang   const PetscScalar *vb;
2154c91732d9SHong Zhang 
2155c91732d9SHong Zhang   PetscFunctionBegin;
2156c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
21579566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2158475b8b61SHong Zhang 
21599566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
2160c91732d9SHong Zhang   if (idx) {
2161475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2162d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2163c91732d9SHong Zhang     }
2164c91732d9SHong Zhang   }
2165c91732d9SHong Zhang 
2166c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
21679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21689566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2169c91732d9SHong Zhang 
21709566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21719566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2172475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2173c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2174475b8b61SHong Zhang       vv[i] = vb[i];
2175c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2176475b8b61SHong Zhang     } else {
2177475b8b61SHong Zhang       vv[i] = va[i];
21789371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2179c91732d9SHong Zhang     }
2180c91732d9SHong Zhang   }
21819566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
21829566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
21839566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21849566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21859566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21869566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2188c91732d9SHong Zhang }
2189c91732d9SHong Zhang 
2190eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2191eede4a3fSMark Adams {
2192eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2193eede4a3fSMark Adams   Vec         vB, vA;
2194eede4a3fSMark Adams 
2195eede4a3fSMark Adams   PetscFunctionBegin;
2196c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
2197eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2198c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
2199eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2200eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2201eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2202eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2203eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2204eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2205eede4a3fSMark Adams }
2206eede4a3fSMark Adams 
2207ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2208d71ae5a4SJacob Faibussowitsch {
2209f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2210f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2211f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2212f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2213f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2214f07e67edSHong Zhang   Vec                diagV, offdiagV;
2215ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2216ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2217f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2218f07e67edSHong Zhang   Mat                B = mat->B;
2219f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2220c87e5d42SMatthew Knepley 
2221c87e5d42SMatthew Knepley   PetscFunctionBegin;
2222f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2223f07e67edSHong Zhang   if (A->cmap->N == n) {
22249566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22259566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22269566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22279566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22289566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22293ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2230f07e67edSHong Zhang   } else if (n == 0) {
2231f07e67edSHong Zhang     if (m) {
22329566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22339371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22349371c9d4SSatish Balay         a[r] = 0.0;
22359371c9d4SSatish Balay         if (idx) idx[r] = -1;
22369371c9d4SSatish Balay       }
22379566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2238f07e67edSHong Zhang     }
22393ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2240f07e67edSHong Zhang   }
2241f07e67edSHong Zhang 
22429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22439566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22449566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22459566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2246f07e67edSHong Zhang 
2247f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22489566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2249ce496241SStefano Zampini   ba = bav;
2250f07e67edSHong Zhang   bi = b->i;
2251f07e67edSHong Zhang   bj = b->j;
22529566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2253f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2254f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2255f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22569371c9d4SSatish Balay       offdiagA[r]   = *ba;
22579371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2258f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2259f07e67edSHong Zhang       offdiagA[r] = 0.0;
2260f07e67edSHong Zhang 
2261f07e67edSHong Zhang       /* Find first hole in the cmap */
2262f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2263f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2264f07e67edSHong Zhang         if (col > j && j < cstart) {
2265f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2266f07e67edSHong Zhang           break;
2267f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2268f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2269f07e67edSHong Zhang           break;
2270f07e67edSHong Zhang         }
2271f07e67edSHong Zhang       }
22724e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2273f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2274f07e67edSHong Zhang         if (ncols == 0) {
2275f07e67edSHong Zhang           if (cstart) {
2276f07e67edSHong Zhang             offdiagIdx[r] = 0;
2277f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2278f07e67edSHong Zhang         } else { /* ncols > 0 */
2279f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2280f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2281f07e67edSHong Zhang         }
2282f07e67edSHong Zhang       }
2283f07e67edSHong Zhang     }
2284f07e67edSHong Zhang 
2285f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22869371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22879371c9d4SSatish Balay         offdiagA[r]   = *ba;
22889371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
22899371c9d4SSatish Balay       }
22909371c9d4SSatish Balay       ba++;
22919371c9d4SSatish Balay       bj++;
2292f07e67edSHong Zhang     }
2293f07e67edSHong Zhang   }
2294f07e67edSHong Zhang 
22959566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
22969566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2297f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2298f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2299f07e67edSHong Zhang       a[r] = diagA[r];
2300f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2301f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2302f07e67edSHong Zhang       a[r] = diagA[r];
2303c87e5d42SMatthew Knepley       if (idx) {
2304f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2305f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2306f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2307f07e67edSHong Zhang       }
2308f07e67edSHong Zhang     } else {
2309f07e67edSHong Zhang       a[r] = offdiagA[r];
2310f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2311c87e5d42SMatthew Knepley     }
2312c87e5d42SMatthew Knepley   }
23139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23149566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23159566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23169566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23179566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23189566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23199566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2321c87e5d42SMatthew Knepley }
2322c87e5d42SMatthew Knepley 
2323ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2324d71ae5a4SJacob Faibussowitsch {
232503bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2326fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2327fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
232803bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
232903bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
233003bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2331ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2332ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2333fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2334fa213d2fSHong Zhang   Mat                B = mat->B;
2335fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
233603bc72f1SMatthew Knepley 
233703bc72f1SMatthew Knepley   PetscFunctionBegin;
2338fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2339fa213d2fSHong Zhang   if (A->cmap->N == n) {
23409566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23419566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23429566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23439566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23449566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23453ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2346fa213d2fSHong Zhang   } else if (n == 0) {
2347fa213d2fSHong Zhang     if (m) {
23489566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23499371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23509371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23519371c9d4SSatish Balay         if (idx) idx[r] = -1;
23529371c9d4SSatish Balay       }
23539566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2354fa213d2fSHong Zhang     }
23553ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2356fa213d2fSHong Zhang   }
2357fa213d2fSHong Zhang 
23589566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23599566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23609566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23619566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2362fa213d2fSHong Zhang 
2363fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2365ce496241SStefano Zampini   ba = bav;
2366fa213d2fSHong Zhang   bi = b->i;
2367fa213d2fSHong Zhang   bj = b->j;
23689566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2369fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2370fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2371fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23729371c9d4SSatish Balay       offdiagA[r]   = *ba;
23739371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2374fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2375fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2376fa213d2fSHong Zhang 
2377fa213d2fSHong Zhang       /* Find first hole in the cmap */
2378fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2379fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2380fa213d2fSHong Zhang         if (col > j && j < cstart) {
2381fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2382fa213d2fSHong Zhang           break;
2383fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2384fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2385fa213d2fSHong Zhang           break;
2386fa213d2fSHong Zhang         }
2387fa213d2fSHong Zhang       }
23884e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2389fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2390fa213d2fSHong Zhang         if (ncols == 0) {
2391fa213d2fSHong Zhang           if (cstart) {
2392fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2393fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2394fa213d2fSHong Zhang         } else { /* ncols > 0 */
2395fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2396fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2397fa213d2fSHong Zhang         }
2398fa213d2fSHong Zhang       }
2399fa213d2fSHong Zhang     }
2400fa213d2fSHong Zhang 
2401fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24029371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24039371c9d4SSatish Balay         offdiagA[r]   = *ba;
24049371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24059371c9d4SSatish Balay       }
24069371c9d4SSatish Balay       ba++;
24079371c9d4SSatish Balay       bj++;
2408fa213d2fSHong Zhang     }
2409fa213d2fSHong Zhang   }
2410fa213d2fSHong Zhang 
24119566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24129566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2413fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2414fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
241503bc72f1SMatthew Knepley       a[r] = diagA[r];
2416fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2417fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2418fa213d2fSHong Zhang       a[r] = diagA[r];
2419fa213d2fSHong Zhang       if (idx) {
2420fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
242103bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2422fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2423fa213d2fSHong Zhang       }
242403bc72f1SMatthew Knepley     } else {
242503bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2426fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
242703bc72f1SMatthew Knepley     }
242803bc72f1SMatthew Knepley   }
24299566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24309566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24319566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24329566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24339566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24349566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24359566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
243703bc72f1SMatthew Knepley }
243803bc72f1SMatthew Knepley 
2439ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2440d71ae5a4SJacob Faibussowitsch {
2441c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24421a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24431a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2444c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2445c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2446c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2447ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2448ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24491a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24501a254869SHong Zhang   Mat                B = mat->B;
24511a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2452c87e5d42SMatthew Knepley 
2453c87e5d42SMatthew Knepley   PetscFunctionBegin;
24541a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24551a254869SHong Zhang   if (A->cmap->N == n) {
24569566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24579566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24589566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24599566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24609566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24613ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24621a254869SHong Zhang   } else if (n == 0) {
24631a254869SHong Zhang     if (m) {
24649566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24659371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24669371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24679371c9d4SSatish Balay         if (idx) idx[r] = -1;
24689371c9d4SSatish Balay       }
24699566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24701a254869SHong Zhang     }
24713ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24721a254869SHong Zhang   }
24731a254869SHong Zhang 
24749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24759566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24769566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24779566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24781a254869SHong Zhang 
24791a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24809566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2481ce496241SStefano Zampini   ba = bav;
24821a254869SHong Zhang   bi = b->i;
24831a254869SHong Zhang   bj = b->j;
24849566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24851a254869SHong Zhang   for (r = 0; r < m; r++) {
24861a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24871a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24889371c9d4SSatish Balay       offdiagA[r]   = *ba;
24899371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
24901a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
24911a254869SHong Zhang       offdiagA[r] = 0.0;
24921a254869SHong Zhang 
24931a254869SHong Zhang       /* Find first hole in the cmap */
24941a254869SHong Zhang       for (j = 0; j < ncols; j++) {
24951a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
24961a254869SHong Zhang         if (col > j && j < cstart) {
24971a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
24981a254869SHong Zhang           break;
24991a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25001a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25011a254869SHong Zhang           break;
25021a254869SHong Zhang         }
25031a254869SHong Zhang       }
25044e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25051a254869SHong Zhang         /* a hole is outside compressed Bcols */
25061a254869SHong Zhang         if (ncols == 0) {
25071a254869SHong Zhang           if (cstart) {
25081a254869SHong Zhang             offdiagIdx[r] = 0;
25091a254869SHong Zhang           } else offdiagIdx[r] = cend;
25101a254869SHong Zhang         } else { /* ncols > 0 */
25111a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25121a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25131a254869SHong Zhang         }
25141a254869SHong Zhang       }
25151a254869SHong Zhang     }
25161a254869SHong Zhang 
25171a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25189371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25199371c9d4SSatish Balay         offdiagA[r]   = *ba;
25209371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25219371c9d4SSatish Balay       }
25229371c9d4SSatish Balay       ba++;
25239371c9d4SSatish Balay       bj++;
25241a254869SHong Zhang     }
25251a254869SHong Zhang   }
25261a254869SHong Zhang 
25279566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25289566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25291a254869SHong Zhang   for (r = 0; r < m; ++r) {
25301a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2531c87e5d42SMatthew Knepley       a[r] = diagA[r];
25321a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25331a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25341a254869SHong Zhang       a[r] = diagA[r];
25351a254869SHong Zhang       if (idx) {
25361a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2537c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25381a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25391a254869SHong Zhang       }
2540c87e5d42SMatthew Knepley     } else {
2541c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25421a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2543c87e5d42SMatthew Knepley     }
2544c87e5d42SMatthew Knepley   }
25459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25469566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25479566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25489566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25499566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25509566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25519566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2553c87e5d42SMatthew Knepley }
2554c87e5d42SMatthew Knepley 
2555d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2556d71ae5a4SJacob Faibussowitsch {
2557f6d58c54SBarry Smith   Mat *dummy;
25585494a064SHong Zhang 
25595494a064SHong Zhang   PetscFunctionBegin;
25609566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2561f6d58c54SBarry Smith   *newmat = *dummy;
25629566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25645494a064SHong Zhang }
25655494a064SHong Zhang 
2566ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2567d71ae5a4SJacob Faibussowitsch {
2568bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2569bbead8a2SBarry Smith 
2570bbead8a2SBarry Smith   PetscFunctionBegin;
25719566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25727b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2574bbead8a2SBarry Smith }
2575bbead8a2SBarry Smith 
2576d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2577d71ae5a4SJacob Faibussowitsch {
257873a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
257973a71a0fSBarry Smith 
258073a71a0fSBarry Smith   PetscFunctionBegin;
258108401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25829566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2583679944adSJunchao Zhang   if (x->assembled) {
25849566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2585679944adSJunchao Zhang   } else {
25869566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2587679944adSJunchao Zhang   }
25889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
25899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
25903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
259173a71a0fSBarry Smith }
2592bbead8a2SBarry Smith 
2593ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2594d71ae5a4SJacob Faibussowitsch {
2595b1b1104fSBarry Smith   PetscFunctionBegin;
2596b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2597b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
25983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2599b1b1104fSBarry Smith }
2600b1b1104fSBarry Smith 
2601b1b1104fSBarry Smith /*@
2602f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2603f2afee66SBarry Smith 
26042ef1f0ffSBarry Smith   Not Collective
2605f2afee66SBarry Smith 
2606f2afee66SBarry Smith   Input Parameter:
2607f2afee66SBarry Smith . A - the matrix
2608f2afee66SBarry Smith 
2609f2afee66SBarry Smith   Output Parameter:
2610f2afee66SBarry Smith . nz - the number of nonzeros
2611f2afee66SBarry Smith 
2612f2afee66SBarry Smith   Level: advanced
2613f2afee66SBarry Smith 
2614fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2615f2afee66SBarry Smith @*/
2616d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2617d71ae5a4SJacob Faibussowitsch {
2618f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2619f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2620dfebb78cSStefano Zampini   PetscBool   isaij;
2621f2afee66SBarry Smith 
2622f2afee66SBarry Smith   PetscFunctionBegin;
2623dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2624dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2625f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2627f2afee66SBarry Smith }
2628f2afee66SBarry Smith 
2629f2afee66SBarry Smith /*@
2630b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2631b1b1104fSBarry Smith 
2632c3339decSBarry Smith   Collective
2633b1b1104fSBarry Smith 
2634b1b1104fSBarry Smith   Input Parameters:
2635b1b1104fSBarry Smith + A  - the matrix
263611a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2637b1b1104fSBarry Smith 
263896a0c994SBarry Smith   Level: advanced
263996a0c994SBarry Smith 
2640fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2641b1b1104fSBarry Smith @*/
2642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2643d71ae5a4SJacob Faibussowitsch {
2644b1b1104fSBarry Smith   PetscFunctionBegin;
2645cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2647b1b1104fSBarry Smith }
2648b1b1104fSBarry Smith 
2649d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject)
2650d71ae5a4SJacob Faibussowitsch {
2651b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2652b1b1104fSBarry Smith 
2653b1b1104fSBarry Smith   PetscFunctionBegin;
2654d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2655b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26569566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26571baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2658d0609cedSBarry Smith   PetscOptionsHeadEnd();
26593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2660b1b1104fSBarry Smith }
2661b1b1104fSBarry Smith 
2662ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2663d71ae5a4SJacob Faibussowitsch {
26647d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2665c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26667d68702bSBarry Smith 
26677d68702bSBarry Smith   PetscFunctionBegin;
2668c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26699566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26705519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2671b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26729566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2673b83222d8SBarry Smith     aij->nonew = nonew;
26747d68702bSBarry Smith   }
26759566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26777d68702bSBarry Smith }
26787d68702bSBarry Smith 
2679ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2680d71ae5a4SJacob Faibussowitsch {
26813b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26823b49f96aSBarry Smith 
26833b49f96aSBarry Smith   PetscFunctionBegin;
268408401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26859566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26863b49f96aSBarry Smith   if (d) {
26873b49f96aSBarry Smith     PetscInt rstart;
26889566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
26893b49f96aSBarry Smith     *d += rstart;
26903b49f96aSBarry Smith   }
26913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26923b49f96aSBarry Smith }
26933b49f96aSBarry Smith 
2694ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2695d71ae5a4SJacob Faibussowitsch {
2696a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2697a8ee9fb5SBarry Smith 
2698a8ee9fb5SBarry Smith   PetscFunctionBegin;
26999566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2701a8ee9fb5SBarry Smith }
27023b49f96aSBarry Smith 
270358c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2704dec0b466SHong Zhang {
2705dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2706dec0b466SHong Zhang 
2707dec0b466SHong Zhang   PetscFunctionBegin;
270858c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
270958c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2711dec0b466SHong Zhang }
2712dec0b466SHong Zhang 
2713cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2714cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2715cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2716cda55fadSBarry Smith                                        MatMult_MPIAIJ,
271797304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27187c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27197c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2720f4259b30SLisandro Dalcin                                        NULL,
2721f4259b30SLisandro Dalcin                                        NULL,
2722f4259b30SLisandro Dalcin                                        NULL,
2723f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2724f4259b30SLisandro Dalcin                                        NULL,
2725f4259b30SLisandro Dalcin                                        NULL,
272641f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2727b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
272897304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2729cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2730cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2731cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2732cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
273397304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2734cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2735cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2736cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2737d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2738f4259b30SLisandro Dalcin                                        NULL,
2739f4259b30SLisandro Dalcin                                        NULL,
2740f4259b30SLisandro Dalcin                                        NULL,
2741f4259b30SLisandro Dalcin                                        NULL,
274226cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2743f4259b30SLisandro Dalcin                                        NULL,
2744f4259b30SLisandro Dalcin                                        NULL,
2745a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2746f4259b30SLisandro Dalcin                                        NULL,
2747d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2748f4259b30SLisandro Dalcin                                        NULL,
2749f4259b30SLisandro Dalcin                                        NULL,
2750f4259b30SLisandro Dalcin                                        NULL,
2751f4259b30SLisandro Dalcin                                        NULL,
2752d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27537dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2754cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2755cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2756cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2757d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2758cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27597d68702bSBarry Smith                                        MatShift_MPIAIJ,
276099e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2761564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
276273a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27638a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27648a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2765f4259b30SLisandro Dalcin                                        NULL,
2766f4259b30SLisandro Dalcin                                        NULL,
276793dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2768f4259b30SLisandro Dalcin                                        NULL,
2769cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
277072e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2771f4259b30SLisandro Dalcin                                        NULL,
27727dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2773e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2774e03a110bSBarry Smith                                        MatView_MPIAIJ,
2775f4259b30SLisandro Dalcin                                        NULL,
2776f4259b30SLisandro Dalcin                                        NULL,
2777f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2778f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2779f4259b30SLisandro Dalcin                                        NULL,
2780f4259b30SLisandro Dalcin                                        NULL,
2781f4259b30SLisandro Dalcin                                        NULL,
2782d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2783c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2784f4259b30SLisandro Dalcin                                        NULL,
2785f4259b30SLisandro Dalcin                                        NULL,
2786f4259b30SLisandro Dalcin                                        NULL,
2787f4259b30SLisandro Dalcin                                        NULL,
27883acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2789b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2790f4259b30SLisandro Dalcin                                        NULL,
2791f4259b30SLisandro Dalcin                                        NULL,
2792f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2793f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2794f4259b30SLisandro Dalcin                                        NULL,
2795f4259b30SLisandro Dalcin                                        NULL,
27965bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
27976cff0a6bSPierre Jolivet                                        NULL,
2798f4259b30SLisandro Dalcin                                        NULL,
2799f4259b30SLisandro Dalcin                                        NULL,
2800f4259b30SLisandro Dalcin                                        NULL,
2801f4259b30SLisandro Dalcin                                        NULL,
2802f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2803f4259b30SLisandro Dalcin                                        NULL,
280426be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2805f4259b30SLisandro Dalcin                                        NULL,
2806f4259b30SLisandro Dalcin                                        NULL,
2807cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2808f4259b30SLisandro Dalcin                                        NULL,
2809f4259b30SLisandro Dalcin                                        NULL,
2810f4259b30SLisandro Dalcin                                        NULL,
2811b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28124222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2813f4259b30SLisandro Dalcin                                        NULL,
2814f4259b30SLisandro Dalcin                                        NULL,
28152fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2816f4259b30SLisandro Dalcin                                        NULL,
2817d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
281899cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
281969db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2820f4259b30SLisandro Dalcin                                        NULL,
2821f4259b30SLisandro Dalcin                                        NULL,
2822f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2823f4259b30SLisandro Dalcin                                        NULL,
28245494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2825f4259b30SLisandro Dalcin                                        NULL,
28263b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2827d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2828f4259b30SLisandro Dalcin                                        NULL,
2829c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2830f4259b30SLisandro Dalcin                                        NULL,
2831f4259b30SLisandro Dalcin                                        NULL,
2832b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2833f4259b30SLisandro Dalcin                                        NULL,
2834f4259b30SLisandro Dalcin                                        NULL,
2835f4259b30SLisandro Dalcin                                        NULL,
2836b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2837f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2838a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2839bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2840a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28417dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2842f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2843f4259b30SLisandro Dalcin                                        NULL,
2844f4259b30SLisandro Dalcin                                        NULL,
2845187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2846f4259b30SLisandro Dalcin                                        NULL,
2847f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2848f4259b30SLisandro Dalcin                                        NULL,
2849f4259b30SLisandro Dalcin                                        NULL,
2850f4259b30SLisandro Dalcin                                        NULL,
2851f4259b30SLisandro Dalcin                                        NULL,
285246533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2853f4259b30SLisandro Dalcin                                        NULL,
2854f4259b30SLisandro Dalcin                                        NULL,
28559c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2856a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28574222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2858f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2859f4259b30SLisandro Dalcin                                        NULL,
286072833a62Smarkadams4                                        NULL,
286172833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28622d776b49SBarry Smith                                        NULL,
2863dec0b466SHong Zhang                                        /*150*/ NULL,
2864eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
2865eede4a3fSMark Adams                                        MatGetRowSumAbs_MPIAIJ};
286636ce4990SBarry Smith 
2867ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2868d71ae5a4SJacob Faibussowitsch {
28692e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28702e8a6d31SBarry Smith 
28712e8a6d31SBarry Smith   PetscFunctionBegin;
28729566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28739566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28752e8a6d31SBarry Smith }
28762e8a6d31SBarry Smith 
2877ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2878d71ae5a4SJacob Faibussowitsch {
28792e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28802e8a6d31SBarry Smith 
28812e8a6d31SBarry Smith   PetscFunctionBegin;
28829566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28839566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28852e8a6d31SBarry Smith }
28868a729477SBarry Smith 
2887d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2888d71ae5a4SJacob Faibussowitsch {
2889ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
28905d2a9ed1SStefano Zampini   PetscMPIInt size;
2891a23d5eceSKris Buschelman 
2892a23d5eceSKris Buschelman   PetscFunctionBegin;
2893ad79cf63SBarry Smith   if (B->hash_active) {
2894aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2895ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2896ad79cf63SBarry Smith   }
28979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
28989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2899899cda47SBarry Smith 
2900cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2901eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2902cb7b82ddSBarry Smith #else
29039566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2904cb7b82ddSBarry Smith #endif
29059566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29069566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29079566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2908cb7b82ddSBarry Smith 
29099566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2910c508b908SBarry Smith 
2911c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29129566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29139566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29149566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29159566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29169566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2917c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2918cb7b82ddSBarry Smith 
2919c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2920ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29219566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29229566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29239566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29249566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2925c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2926899cda47SBarry Smith 
29279566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29289566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2929526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2930cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
293115001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2933a23d5eceSKris Buschelman }
2934a23d5eceSKris Buschelman 
2935ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2936d71ae5a4SJacob Faibussowitsch {
2937ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2938846b4da1SFande Kong 
2939846b4da1SFande Kong   PetscFunctionBegin;
2940846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29419566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29429566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2943846b4da1SFande Kong 
2944846b4da1SFande Kong #if defined(PETSC_USE_CTABLE)
2945eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2946846b4da1SFande Kong #else
29479566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2948846b4da1SFande Kong #endif
29499566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29509566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29519566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2952846b4da1SFande Kong 
29539566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->A));
29549566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->B));
2955846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2956846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2957846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
29583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2959846b4da1SFande Kong }
2960846b4da1SFande Kong 
2961d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2962d71ae5a4SJacob Faibussowitsch {
2963d6dfbf8fSBarry Smith   Mat         mat;
2964416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2965d6dfbf8fSBarry Smith 
29663a40ed3dSBarry Smith   PetscFunctionBegin;
2967f4259b30SLisandro Dalcin   *newmat = NULL;
29689566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29699566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29709566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29719566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2972273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2973e1b6402fSHong Zhang 
2974d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2975501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2976e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2977d6dfbf8fSBarry Smith 
297817699dbbSLois Curfman McInnes   a->size         = oldmat->size;
297917699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2980e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2981e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2982501880eeSStefano Zampini   a->rowindices   = NULL;
2983501880eeSStefano Zampini   a->rowvalues    = NULL;
2984bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
2985d6dfbf8fSBarry Smith 
29869566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
29879566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2988420957c1SBarry Smith   if (matin->hash_active) {
2989420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2990420957c1SBarry Smith   } else {
2991420957c1SBarry Smith     mat->preallocated = matin->preallocated;
29922ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
2993aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2994eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2995b1fc9764SSatish Balay #else
29969566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
29979566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
2998b1fc9764SSatish Balay #endif
2999501880eeSStefano Zampini     } else a->colmap = NULL;
30003f41c07dSBarry Smith     if (oldmat->garray) {
3001b1d57f15SBarry Smith       PetscInt len;
3002d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30039566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30049566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3005501880eeSStefano Zampini     } else a->garray = NULL;
3006d6dfbf8fSBarry Smith 
30070de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30080de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30090de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3010aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3011*cff58d65SJunchao Zhang     if (oldmat->Mvctx) {
3012*cff58d65SJunchao Zhang       a->Mvctx = oldmat->Mvctx;
3013*cff58d65SJunchao Zhang       PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx));
3014*cff58d65SJunchao Zhang     }
30159566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30169566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3017420957c1SBarry Smith   }
30189566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30198a729477SBarry Smith   *newmat = mat;
30203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30218a729477SBarry Smith }
3022416022c9SBarry Smith 
3023d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3024d71ae5a4SJacob Faibussowitsch {
302552f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
302652f91c60SVaclav Hapla 
302752f91c60SVaclav Hapla   PetscFunctionBegin;
302852f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
302952f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3030c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30319566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30329566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30339566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
303452f91c60SVaclav Hapla   if (isbinary) {
30359566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
303652f91c60SVaclav Hapla   } else if (ishdf5) {
303752f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30389566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
303952f91c60SVaclav Hapla #else
304052f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
304152f91c60SVaclav Hapla #endif
304252f91c60SVaclav Hapla   } else {
304398921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
304452f91c60SVaclav Hapla   }
30453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
304652f91c60SVaclav Hapla }
304752f91c60SVaclav Hapla 
3048d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3049d71ae5a4SJacob Faibussowitsch {
30503ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30513ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30523ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30538fb81238SShri Abhyankar 
30548fb81238SShri Abhyankar   PetscFunctionBegin;
30559566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30568fb81238SShri Abhyankar 
30573ea6fe3dSLisandro Dalcin   /* read in matrix header */
30589566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
305908401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30609371c9d4SSatish Balay   M  = header[1];
30619371c9d4SSatish Balay   N  = header[2];
30629371c9d4SSatish Balay   nz = header[3];
306308401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
306408401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
306508401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
306608ea439dSMark F. Adams 
30673ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30689566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30693ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30703ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30713ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30739566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30748fb81238SShri Abhyankar 
30753ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30769566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3077aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30788fb81238SShri Abhyankar 
30793ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30809566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30829566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
30839371c9d4SSatish Balay   rowidxs[0] = 0;
30849371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
308538b83642SBarry Smith   if (nz != PETSC_MAX_INT) {
30861c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
308708401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
308838b83642SBarry Smith   }
308938b83642SBarry Smith 
30903ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
30919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
30929566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
30939566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
30943ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
30959566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
30969566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
30979566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
30983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30998fb81238SShri Abhyankar }
31008fb81238SShri Abhyankar 
31013782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3102ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3103d71ae5a4SJacob Faibussowitsch {
31044aa3045dSJed Brown   IS          iscol_local;
3105c5e4d11fSDmitry Karpeev   PetscBool   isstride;
3106c5e4d11fSDmitry Karpeev   PetscMPIInt lisstride = 0, gisstride;
31073782ecc7SHong Zhang 
31083782ecc7SHong Zhang   PetscFunctionBegin;
31093782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31109566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31113782ecc7SHong Zhang 
3112c5e4d11fSDmitry Karpeev   if (isstride) {
3113c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31149566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31159566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31169566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
3117c5e4d11fSDmitry Karpeev     if (mstart == start && mlen - mstart == len) lisstride = 1;
3118c5e4d11fSDmitry Karpeev   }
31193782ecc7SHong Zhang 
31201c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3121c5e4d11fSDmitry Karpeev   if (gisstride) {
3122c5e4d11fSDmitry Karpeev     PetscInt N;
31239566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31249566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31259566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31269566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3127c5e4d11fSDmitry Karpeev   } else {
3128c5bfad50SMark F. Adams     PetscInt cbs;
31299566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31309566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31319566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3132b79d0421SJed Brown   }
31333782ecc7SHong Zhang 
31343782ecc7SHong Zhang   *isseq = iscol_local;
31353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3136c5e4d11fSDmitry Karpeev }
31378d2139bdSHong Zhang 
3138ddfdf956SHong Zhang /*
31399c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31409c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3141ddfdf956SHong Zhang 
3142ddfdf956SHong Zhang  Input Parameters:
314327430b45SBarry Smith +   mat - matrix
314427430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31459c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
314627430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3147ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
314827430b45SBarry Smith 
314927430b45SBarry Smith  Output Parameters:
315027430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
315127430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
315227430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
315327430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3154ddfdf956SHong Zhang  */
3155ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[])
3156d71ae5a4SJacob Faibussowitsch {
3157040216a4SHong Zhang   Vec             x, cmap;
3158040216a4SHong Zhang   const PetscInt *is_idx;
3159040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31609c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3161040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3162040216a4SHong Zhang   Mat             B    = a->B;
3163040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3164a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31658b3fa1f7SHong Zhang   MPI_Comm        comm;
31663a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31673782ecc7SHong Zhang 
31683782ecc7SHong Zhang   PetscFunctionBegin;
31699566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31709566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31718b3fa1f7SHong Zhang 
3172ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31739566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31749566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31759566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31769566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31770a351717SHong Zhang 
31789c988bcaSHong Zhang   /* Get start indices */
31799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3180ddfdf956SHong Zhang   isstart -= ncols;
31819566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3182040216a4SHong Zhang 
31839566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
31849566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
31859566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
31869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3187ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
31888b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3189ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
31909c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
31918b3fa1f7SHong Zhang   }
31929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
31939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
31949566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
31958b3fa1f7SHong Zhang 
31969c988bcaSHong Zhang   /* Get iscol_d */
31979566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
31989566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
31999566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3200feb78a15SHong Zhang 
32019c988bcaSHong Zhang   /* Get isrow_d */
32029566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3203feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32059566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32069c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32079566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3208feb78a15SHong Zhang 
32099566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32109566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32119566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3212feb78a15SHong Zhang 
32139c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32149566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32159566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3216ddfdf956SHong Zhang 
32179566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
321807250d77SHong Zhang 
32199566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32209566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
322164efcef9SHong Zhang 
32229c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3223ddfdf956SHong Zhang   /* off-process column indices */
32249c988bcaSHong Zhang   count = 0;
32259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3227feb78a15SHong Zhang 
32289566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32299566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32308b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3231f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32329c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32331c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32341c645242SHong Zhang       count++;
32358b3fa1f7SHong Zhang     }
32368b3fa1f7SHong Zhang   }
32379566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32389566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
323907250d77SHong Zhang 
32409566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3241b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3242b6d9b4e0SHong Zhang 
32439566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32449c988bcaSHong Zhang   *garray = cmap1;
32459c988bcaSHong Zhang 
32469566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32479566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32489566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3250040216a4SHong Zhang }
3251040216a4SHong Zhang 
3252b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3253d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3254d71ae5a4SJacob Faibussowitsch {
3255b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32561fd43edeSHong Zhang   Mat         M = NULL;
32573b00a383SHong Zhang   MPI_Comm    comm;
3258b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32593b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3260b20e2604SHong Zhang   PetscInt    n;
32613b00a383SHong Zhang 
32623b00a383SHong Zhang   PetscFunctionBegin;
32639566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32643b00a383SHong Zhang 
32653b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3266b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32679566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
326828b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32693b00a383SHong Zhang 
32709566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
327128b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32723b00a383SHong Zhang 
32739566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
327428b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32753b00a383SHong Zhang 
3276b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3277b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32789566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32799566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
328048a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32819566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32829566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
32833b00a383SHong Zhang 
32843b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
32859c988bcaSHong Zhang     const PetscInt *garray;
3286b20e2604SHong Zhang     PetscInt        BsubN;
32873b00a383SHong Zhang 
3288b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
32899566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
32903b00a383SHong Zhang 
3291b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
32929566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
32939566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
32943b00a383SHong Zhang 
32959c988bcaSHong Zhang     /* Create submatrix M */
32969566063dSJacob Faibussowitsch     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M));
32973b00a383SHong Zhang 
3298b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3299b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33007cfce09cSHong Zhang 
33019566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3302b20e2604SHong Zhang     n = asub->B->cmap->N;
3303b20e2604SHong Zhang     if (BsubN > n) {
3304c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33057cfce09cSHong Zhang       const PetscInt *idx;
33069c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33079566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33087cfce09cSHong Zhang 
33099566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33107cfce09cSHong Zhang       j = 0;
33119566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3312b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33137cfce09cSHong Zhang         if (j >= BsubN) break;
33149c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33157cfce09cSHong Zhang 
33169c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33177cfce09cSHong Zhang           idx_new[i] = idx[j++];
331898921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33197cfce09cSHong Zhang       }
33209566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33217cfce09cSHong Zhang 
33229566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33239566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33247cfce09cSHong Zhang 
3325b20e2604SHong Zhang     } else if (BsubN < n) {
332698921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3327b20e2604SHong Zhang     }
33287cfce09cSHong Zhang 
33299566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3330b20e2604SHong Zhang     *submat = M;
33313b00a383SHong Zhang 
3332e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33339566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33349566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33353b00a383SHong Zhang 
33369566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33379566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33383b00a383SHong Zhang 
33399566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33409566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33413b00a383SHong Zhang   }
33423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33433b00a383SHong Zhang }
33443b00a383SHong Zhang 
3345d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3346d71ae5a4SJacob Faibussowitsch {
33471358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33483782ecc7SHong Zhang   PetscInt  csize;
334918e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33504a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33513782ecc7SHong Zhang   MPI_Comm  comm;
33523782ecc7SHong Zhang 
33533782ecc7SHong Zhang   PetscFunctionBegin;
3354bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3355a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33568f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33579566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3358d5761cdaSHong Zhang     if (isrow_d) {
3359d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3360d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3361d5761cdaSHong Zhang     } else {
33629566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3363d5761cdaSHong Zhang       if (iscol_local) {
3364d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3365d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3366d5761cdaSHong Zhang       }
3367d5761cdaSHong Zhang     }
33688f69fa7bSHong Zhang   } else {
3369e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
337018e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33719566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33723782ecc7SHong Zhang     if (!n) {
337318e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33743782ecc7SHong Zhang     } else {
33759566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33769566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3377ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33788f69fa7bSHong Zhang     }
33793782ecc7SHong Zhang 
3380e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
338118e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33829566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
338318e627e3SHong Zhang     if (!n) {
338418e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
338518e627e3SHong Zhang     } else {
33869566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
33879566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
338818e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
338918e627e3SHong Zhang     }
339018e627e3SHong Zhang 
33919566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
33921c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
339318e627e3SHong Zhang     sameRowDist = tsameDist[0];
339418e627e3SHong Zhang   }
339518e627e3SHong Zhang 
339618e627e3SHong Zhang   if (sameRowDist) {
3397b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
33983b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
33999566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34003ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3401b20e2604SHong Zhang     } else { /* sameRowDist */
34023b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34031358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34041358a193SHong Zhang         PetscBool sorted;
34059566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34069566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34079566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
340808401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34091358a193SHong Zhang 
34109566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34111358a193SHong Zhang         if (sorted) {
34121358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34139566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34143ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34153782ecc7SHong Zhang         }
34161358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
341748c0d076SHong Zhang         IS iscol_sub;
34189566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
341948c0d076SHong Zhang         if (iscol_sub) {
34209566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34213ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
342248c0d076SHong Zhang         }
34231358a193SHong Zhang       }
34241358a193SHong Zhang     }
34251358a193SHong Zhang   }
34263782ecc7SHong Zhang 
3427bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34283782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34299566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
343028b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34313782ecc7SHong Zhang   } else {
343248a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34331358a193SHong Zhang   }
34343782ecc7SHong Zhang 
34359566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34369566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34378f69fa7bSHong Zhang 
3438b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34399566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34409566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3441b79d0421SJed Brown   }
34423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34434aa3045dSJed Brown }
34444aa3045dSJed Brown 
3445feb78a15SHong Zhang /*@C
344611a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3447feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3448feb78a15SHong Zhang 
3449d083f849SBarry Smith   Collective
3450feb78a15SHong Zhang 
3451feb78a15SHong Zhang   Input Parameters:
3452feb78a15SHong Zhang + comm   - MPI communicator
3453feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3454b20e2604SHong Zhang . B      - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine
34552ef1f0ffSBarry Smith - garray - global index of `B` columns
3456feb78a15SHong Zhang 
3457feb78a15SHong Zhang   Output Parameter:
34582ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
345927430b45SBarry Smith 
3460feb78a15SHong Zhang   Level: advanced
3461feb78a15SHong Zhang 
3462feb78a15SHong Zhang   Notes:
346311a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
346411a5261eSBarry Smith 
34652ef1f0ffSBarry Smith   `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore.
3466feb78a15SHong Zhang 
34671cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3468feb78a15SHong Zhang @*/
3469d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat)
3470d71ae5a4SJacob Faibussowitsch {
3471feb78a15SHong Zhang   Mat_MPIAIJ        *maij;
3472e489de8fSHong Zhang   Mat_SeqAIJ        *b  = (Mat_SeqAIJ *)B->data, *bnew;
3473a5348796SHong Zhang   PetscInt          *oi = b->i, *oj = b->j, i, nz, col;
3474ce496241SStefano Zampini   const PetscScalar *oa;
3475e489de8fSHong Zhang   Mat                Bnew;
3476feb78a15SHong Zhang   PetscInt           m, n, N;
34774ab4d6f4SRichard Tran Mills   MatType            mpi_mat_type;
3478feb78a15SHong Zhang 
3479feb78a15SHong Zhang   PetscFunctionBegin;
34809566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
34819566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
348208401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
348337a5e0faSPierre Jolivet   PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3484b6d9b4e0SHong Zhang   /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */
348508401ef6SPierre Jolivet   /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */
3486feb78a15SHong Zhang 
3487e489de8fSHong Zhang   /* Get global columns of mat */
34881c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm));
3489feb78a15SHong Zhang 
34909566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N));
34914ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
34924ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
34934ab4d6f4SRichard Tran Mills   PetscCall(MatSetType(*mat, mpi_mat_type));
34944ab4d6f4SRichard Tran Mills 
349537a5e0faSPierre Jolivet   if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs));
3496feb78a15SHong Zhang   maij = (Mat_MPIAIJ *)(*mat)->data;
3497feb78a15SHong Zhang 
3498feb78a15SHong Zhang   (*mat)->preallocated = PETSC_TRUE;
3499feb78a15SHong Zhang 
35009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
35019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
3502feb78a15SHong Zhang 
3503e489de8fSHong Zhang   /* Set A as diagonal portion of *mat */
3504feb78a15SHong Zhang   maij->A = A;
3505feb78a15SHong Zhang 
3506a5348796SHong Zhang   nz = oi[m];
3507a5348796SHong Zhang   for (i = 0; i < nz; i++) {
3508a5348796SHong Zhang     col   = oj[i];
3509a5348796SHong Zhang     oj[i] = garray[col];
3510feb78a15SHong Zhang   }
3511feb78a15SHong Zhang 
3512e489de8fSHong Zhang   /* Set Bnew as off-diagonal portion of *mat */
35139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &oa));
35149566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew));
35159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &oa));
3516e489de8fSHong Zhang   bnew        = (Mat_SeqAIJ *)Bnew->data;
3517e489de8fSHong Zhang   bnew->maxnz = b->maxnz; /* allocated nonzeros of B */
3518e489de8fSHong Zhang   maij->B     = Bnew;
3519d5761cdaSHong Zhang 
352008401ef6SPierre Jolivet   PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N);
3521d5761cdaSHong Zhang 
3522e489de8fSHong Zhang   b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */
3523d5761cdaSHong Zhang   b->free_a       = PETSC_FALSE;
3524d5761cdaSHong Zhang   b->free_ij      = PETSC_FALSE;
35259566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&B));
3526d5761cdaSHong Zhang 
3527e489de8fSHong Zhang   bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */
3528e489de8fSHong Zhang   bnew->free_a       = PETSC_TRUE;
3529e489de8fSHong Zhang   bnew->free_ij      = PETSC_TRUE;
3530feb78a15SHong Zhang 
3531a5348796SHong Zhang   /* condense columns of maij->B */
35329566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
35339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
35349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
35359566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
35369566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3538feb78a15SHong Zhang }
3539feb78a15SHong Zhang 
3540ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35414aa3045dSJed Brown 
3542d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3543d71ae5a4SJacob Faibussowitsch {
354498b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
354585f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
354698b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35471fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
354898b658c4SHong Zhang   MatScalar      *aa;
354900e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3550a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
355198b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
355298b658c4SHong Zhang   IS              iscol_sub, iscmap;
355398b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
355418e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3555a31a438cSHong Zhang   MPI_Comm        comm;
35567e2c5f70SBarry Smith 
3557a0ff6018SBarry Smith   PetscFunctionBegin;
35589566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3559d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35609566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
356128b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35629566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3563d5761cdaSHong Zhang 
35649566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
356528b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3566d5761cdaSHong Zhang 
35679566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
356828b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3569d5761cdaSHong Zhang 
35709566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3571d5761cdaSHong Zhang 
3572d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35733b00a383SHong Zhang     PetscBool flg;
35743b00a383SHong Zhang 
35759566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35769566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3577bcae8d28SHong Zhang 
35783b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3579366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35809566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3581366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
35821c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3583366a327dSHong Zhang     if (allcolumns) {
3584366a327dSHong Zhang       iscol_sub = iscol_local;
35859566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35869566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3587366a327dSHong Zhang 
35883b00a383SHong Zhang     } else {
35891358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3590244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35919566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
35929566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
35939566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
35948d2139bdSHong Zhang       count = 0;
3595a31a438cSHong Zhang       k     = 0;
3596a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3597a31a438cSHong Zhang         j = is_idx[i];
3598a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3599a31a438cSHong Zhang           /* diagonal part of mat */
36008d2139bdSHong Zhang           idx[count]     = j;
3601366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36024a3daf6eSHong Zhang         } else if (Bn) {
3603a31a438cSHong Zhang           /* off-diagonal part of mat */
3604a31a438cSHong Zhang           if (j == garray[k]) {
36058d2139bdSHong Zhang             idx[count]     = j;
3606a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3607a31a438cSHong Zhang           } else if (j > garray[k]) {
3608a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3609a31a438cSHong Zhang             if (j == garray[k]) {
3610a31a438cSHong Zhang               idx[count]     = j;
3611a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36128d2139bdSHong Zhang             }
36138d2139bdSHong Zhang           }
36148d2139bdSHong Zhang         }
36158d2139bdSHong Zhang       }
36169566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36178d2139bdSHong Zhang 
36189566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36199566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36209566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3621b6d9b4e0SHong Zhang 
36229566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3623a31a438cSHong Zhang     }
36248b3fa1f7SHong Zhang 
36253b00a383SHong Zhang     /* (3) Create sequential Msub */
36269566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3627d5761cdaSHong Zhang   }
36288d2139bdSHong Zhang 
36299566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
363098b658c4SHong Zhang   aij = (Mat_SeqAIJ *)(Msub)->data;
363198b658c4SHong Zhang   ii  = aij->i;
36329566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3633a0ff6018SBarry Smith 
3634a0ff6018SBarry Smith   /*
3635a0ff6018SBarry Smith       m - number of local rows
3636a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3637a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3638a0ff6018SBarry Smith   */
36399566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
364098b658c4SHong Zhang 
36413b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36423b00a383SHong Zhang     /* (4) Create parallel newmat */
364398b658c4SHong Zhang     PetscMPIInt rank, size;
3644bcae8d28SHong Zhang     PetscInt    csize;
364598b658c4SHong Zhang 
36469566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36479566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
364800e6dbe6SBarry Smith 
3649a0ff6018SBarry Smith     /*
365000e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
365100e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3652a0ff6018SBarry Smith     */
365300e6dbe6SBarry Smith 
365400e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36559566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36566a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36579566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3658a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3659e2c4fddaSBarry Smith         nlocal = m;
36606a6a5d1dSBarry Smith       } else {
3661a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3662ab50ec6bSBarry Smith       }
3663ab50ec6bSBarry Smith     } else {
36646a6a5d1dSBarry Smith       nlocal = csize;
36656a6a5d1dSBarry Smith     }
36669566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
366700e6dbe6SBarry Smith     rstart = rend - nlocal;
3668aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
366900e6dbe6SBarry Smith 
367000e6dbe6SBarry Smith     /* next, compute all the lengths */
367198b658c4SHong Zhang     jj = aij->j;
36729566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
367300e6dbe6SBarry Smith     olens = dlens + m;
367400e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
367500e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
367600e6dbe6SBarry Smith       olen = 0;
367700e6dbe6SBarry Smith       dlen = 0;
367800e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
367915b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
368000e6dbe6SBarry Smith         else dlen++;
368100e6dbe6SBarry Smith         jj++;
368200e6dbe6SBarry Smith       }
368300e6dbe6SBarry Smith       olens[i] = olen;
368400e6dbe6SBarry Smith       dlens[i] = dlen;
368500e6dbe6SBarry Smith     }
3686b6d9b4e0SHong Zhang 
36879566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36889566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
368998b658c4SHong Zhang 
36909566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36919566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
36929566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
36939566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
36949566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
36959566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3696d5761cdaSHong Zhang 
3697d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3698a0ff6018SBarry Smith     M = *newmat;
36999566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
370008401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
37019566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3702c48de900SBarry Smith     /*
3703c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3704c48de900SBarry Smith        rather than the slower MatSetValues().
3705c48de900SBarry Smith     */
3706c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3707c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3708a0ff6018SBarry Smith   }
3709548ecf4dSHong Zhang 
37103b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37129566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
371398b658c4SHong Zhang 
371498b658c4SHong Zhang   jj = aij->j;
37159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3716a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3717a0ff6018SBarry Smith     row = rstart + i;
371800e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
371915b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37209566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37219371c9d4SSatish Balay     jj += nz;
37229371c9d4SSatish Balay     aa += nz;
3723a0ff6018SBarry Smith   }
37249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37259566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3726a0ff6018SBarry Smith 
37279566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37289566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3729fee21e36SBarry Smith 
37309566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
373198b658c4SHong Zhang 
373298b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3733fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37343b00a383SHong Zhang     *newmat = M;
3735f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37369566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
373798b658c4SHong Zhang 
3738f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37399566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
374098b658c4SHong Zhang 
3741f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37429566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3743bcae8d28SHong Zhang 
3744bcae8d28SHong Zhang     if (iscol_local) {
3745f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37469566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3747bcae8d28SHong Zhang     }
374898b658c4SHong Zhang   }
37493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3750a0ff6018SBarry Smith }
3751273d9f13SBarry Smith 
3752df40acb1SHong Zhang /*
3753df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3754df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3755df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3756df40acb1SHong Zhang 
375711a5261eSBarry Smith   This requires a sequential iscol with all indices.
3758df40acb1SHong Zhang */
3759d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3760d71ae5a4SJacob Faibussowitsch {
3761df40acb1SHong Zhang   PetscMPIInt rank, size;
3762df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3763df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3764df40acb1SHong Zhang   Mat         M, Mreuse;
376598b658c4SHong Zhang   MatScalar  *aa, *vwork;
3766df40acb1SHong Zhang   MPI_Comm    comm;
3767df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37680b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3769df40acb1SHong Zhang 
3770df40acb1SHong Zhang   PetscFunctionBegin;
37719566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37739566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3774df40acb1SHong Zhang 
37750b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37769566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37779566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37780b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
37791c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37800b27a90eSHong Zhang 
3781df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37829566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
378328b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37849566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3785df40acb1SHong Zhang   } else {
37869566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3787df40acb1SHong Zhang   }
3788df40acb1SHong Zhang 
3789df40acb1SHong Zhang   /*
3790df40acb1SHong Zhang       m - number of local rows
3791df40acb1SHong Zhang       n - number of columns (same on all processors)
3792df40acb1SHong Zhang       rstart - first row in new global matrix generated
3793df40acb1SHong Zhang   */
37949566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
37959566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3796df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
3797df40acb1SHong Zhang     aij = (Mat_SeqAIJ *)(Mreuse)->data;
3798df40acb1SHong Zhang     ii  = aij->i;
3799df40acb1SHong Zhang     jj  = aij->j;
3800df40acb1SHong Zhang 
3801df40acb1SHong Zhang     /*
3802df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3803df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3804df40acb1SHong Zhang     */
3805df40acb1SHong Zhang 
3806df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3807df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38089566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3809df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3810df40acb1SHong Zhang         nlocal = m;
3811df40acb1SHong Zhang       } else {
3812df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3813df40acb1SHong Zhang       }
3814df40acb1SHong Zhang     } else {
3815df40acb1SHong Zhang       nlocal = csize;
3816df40acb1SHong Zhang     }
38179566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3818df40acb1SHong Zhang     rstart = rend - nlocal;
3819aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3820df40acb1SHong Zhang 
3821df40acb1SHong Zhang     /* next, compute all the lengths */
38229566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3823df40acb1SHong Zhang     olens = dlens + m;
3824df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3825df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3826df40acb1SHong Zhang       olen = 0;
3827df40acb1SHong Zhang       dlen = 0;
3828df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3829df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3830df40acb1SHong Zhang         else dlen++;
3831df40acb1SHong Zhang         jj++;
3832df40acb1SHong Zhang       }
3833df40acb1SHong Zhang       olens[i] = olen;
3834df40acb1SHong Zhang       dlens[i] = dlen;
3835df40acb1SHong Zhang     }
38369566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38379566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38389566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38399566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38409566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38419566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3842df40acb1SHong Zhang   } else {
3843df40acb1SHong Zhang     PetscInt ml, nl;
3844df40acb1SHong Zhang 
3845df40acb1SHong Zhang     M = *newmat;
38469566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
384708401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38489566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3849df40acb1SHong Zhang     /*
3850df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3851df40acb1SHong Zhang        rather than the slower MatSetValues().
3852df40acb1SHong Zhang     */
3853df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3854df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3855df40acb1SHong Zhang   }
38569566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
3857df40acb1SHong Zhang   aij = (Mat_SeqAIJ *)(Mreuse)->data;
3858df40acb1SHong Zhang   ii  = aij->i;
3859df40acb1SHong Zhang   jj  = aij->j;
38602e5835c6SStefano Zampini 
38612e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38629566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3863df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3864df40acb1SHong Zhang     row   = rstart + i;
3865df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38669371c9d4SSatish Balay     cwork = jj;
38678e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38689371c9d4SSatish Balay     vwork = aa;
38698e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38709566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3871df40acb1SHong Zhang   }
38729566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3873df40acb1SHong Zhang 
38749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38759566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3876df40acb1SHong Zhang   *newmat = M;
3877df40acb1SHong Zhang 
3878df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3879df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38809566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38819566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3882df40acb1SHong Zhang   }
38833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3884df40acb1SHong Zhang }
3885df40acb1SHong Zhang 
3886ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3887d71ae5a4SJacob Faibussowitsch {
38886a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
3889899cda47SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii;
3890ccd8e176SBarry Smith   const PetscInt *JJ;
3891eeb24464SBarry Smith   PetscBool       nooffprocentries;
38926a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3893ccd8e176SBarry Smith 
3894ccd8e176SBarry Smith   PetscFunctionBegin;
3895aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]);
3896899cda47SBarry Smith 
38979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
38989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3899d0f46423SBarry Smith   m      = B->rmap->n;
3900d0f46423SBarry Smith   cstart = B->cmap->rstart;
3901d0f46423SBarry Smith   cend   = B->cmap->rend;
3902d0f46423SBarry Smith   rstart = B->rmap->rstart;
3903899cda47SBarry Smith 
39049566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3905ccd8e176SBarry Smith 
390676bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39078f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3908ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39098e3a54c0SPierre Jolivet       JJ  = PetscSafePointerPlusOffset(J, Ii[i]);
391008401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
391108401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
391208401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3913ecc77c7aSBarry Smith     }
391476bd3646SJed Brown   }
3915ecc77c7aSBarry Smith 
39168f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3917b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39188e3a54c0SPierre Jolivet     JJ      = PetscSafePointerPlusOffset(J, Ii[i]);
3919ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3920ccd8e176SBarry Smith     d       = 0;
39210daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39220daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3923ccd8e176SBarry Smith     }
3924ccd8e176SBarry Smith     d_nnz[i] = d;
3925ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3926ccd8e176SBarry Smith   }
39279566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39289566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3929ccd8e176SBarry Smith 
39308f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3931ccd8e176SBarry Smith     ii = i + rstart;
39328e3a54c0SPierre Jolivet     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES));
3933ccd8e176SBarry Smith   }
3934eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3935eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39379566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3938eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3939ccd8e176SBarry Smith 
39406a3d2595SBarry Smith   /* count number of entries below block diagonal */
39416a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39426a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39436a3d2595SBarry Smith   Aij->ld = ld;
39446a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39456a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39466a3d2595SBarry Smith     j   = 0;
3947ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39486a3d2595SBarry Smith     ld[i] = j;
3949720a2405SPierre Jolivet     if (J) J += nnz;
39506a3d2595SBarry Smith   }
39516a3d2595SBarry Smith 
39529566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3954ccd8e176SBarry Smith }
3955ccd8e176SBarry Smith 
39561eea217eSSatish Balay /*@
395711a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3958ccd8e176SBarry Smith   (the default parallel PETSc format).
3959ccd8e176SBarry Smith 
3960d083f849SBarry Smith   Collective
3961ccd8e176SBarry Smith 
3962ccd8e176SBarry Smith   Input Parameters:
3963a1661176SMatthew Knepley + B - the matrix
3964d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
3965d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
3966ccd8e176SBarry Smith - v - optional values in the matrix
3967ccd8e176SBarry Smith 
3968ccd8e176SBarry Smith   Level: developer
3969ccd8e176SBarry Smith 
397012251496SSatish Balay   Notes:
39712ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39722ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
397311a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
397412251496SSatish Balay 
39752ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
397612251496SSatish Balay 
3977a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3978a4bd8bc0SBarry Smith 
3979a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3980a4bd8bc0SBarry Smith 
3981a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3982a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3983a4bd8bc0SBarry Smith 
398412251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
398512251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3986c5e4d11fSDmitry Karpeev   as shown
398727430b45SBarry Smith .vb
398827430b45SBarry Smith         1 0 0
398927430b45SBarry Smith         2 0 3     P0
399027430b45SBarry Smith        -------
399127430b45SBarry Smith         4 5 6     P1
399227430b45SBarry Smith 
399327430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
399427430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
399527430b45SBarry Smith         j =  {0,0,2}  [size = 3]
399627430b45SBarry Smith         v =  {1,2,3}  [size = 3]
399727430b45SBarry Smith 
399827430b45SBarry Smith      Process1 [P1] rows_owned=[2]
399927430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
400027430b45SBarry Smith         j =  {0,1,2}  [size = 3]
400127430b45SBarry Smith         v =  {4,5,6}  [size = 3]
400227430b45SBarry Smith .ve
400312251496SSatish Balay 
4004fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4005a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4006ccd8e176SBarry Smith @*/
4007d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4008d71ae5a4SJacob Faibussowitsch {
4009ccd8e176SBarry Smith   PetscFunctionBegin;
4010cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4012ccd8e176SBarry Smith }
4013ccd8e176SBarry Smith 
4014273d9f13SBarry Smith /*@C
401511a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4016273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4017273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
401820f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4019273d9f13SBarry Smith 
4020d083f849SBarry Smith   Collective
4021273d9f13SBarry Smith 
4022273d9f13SBarry Smith   Input Parameters:
40231c4f3114SJed Brown + B     - the matrix
4024273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4025273d9f13SBarry Smith            (same value is used for all local rows)
4026273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4027273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40282ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4029273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40303287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40313287b5eaSJed Brown            the diagonal entry even if it is zero.
4032273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4033273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4034273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4035273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40362ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4037273d9f13SBarry Smith            structure. The size of this array is equal to the number
4038273d9f13SBarry Smith            of local rows, i.e 'm'.
4039273d9f13SBarry Smith 
40402920cce0SJacob Faibussowitsch   Example Usage:
404127430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
404227430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
404327430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
404427430b45SBarry Smith   as follows
404527430b45SBarry Smith 
404627430b45SBarry Smith .vb
404727430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
404827430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
404927430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
405027430b45SBarry Smith     -------------------------------------
405127430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
405227430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
405327430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
405427430b45SBarry Smith     -------------------------------------
405527430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
405627430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
405727430b45SBarry Smith .ve
405827430b45SBarry Smith 
405927430b45SBarry Smith   This can be represented as a collection of submatrices as
406027430b45SBarry Smith .vb
406127430b45SBarry Smith       A B C
406227430b45SBarry Smith       D E F
406327430b45SBarry Smith       G H I
406427430b45SBarry Smith .ve
406527430b45SBarry Smith 
406627430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
406727430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
406827430b45SBarry Smith 
406927430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407027430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407127430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
407227430b45SBarry Smith 
407327430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
407427430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
407527430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
407627430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
407727430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
407827430b45SBarry Smith   matrix, ans [DF] as another `MATSEQAIJ` matrix.
407927430b45SBarry Smith 
408020f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
408120f4b53cSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
408227430b45SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
408320f4b53cSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
408427430b45SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
408520f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
408627430b45SBarry Smith .vb
408727430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
408827430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
408927430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
409027430b45SBarry Smith .ve
409120f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
409227430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
409327430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
409427430b45SBarry Smith   34 values.
409527430b45SBarry Smith 
409620f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
409727430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
409820f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
409927430b45SBarry Smith .vb
410027430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
410127430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
410227430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
410327430b45SBarry Smith .ve
410427430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
410527430b45SBarry Smith   hence pre-allocation is perfect.
410627430b45SBarry Smith 
410727430b45SBarry Smith   Level: intermediate
410827430b45SBarry Smith 
410927430b45SBarry Smith   Notes:
411049a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
411149a6f317SBarry Smith 
411227430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41130598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4114651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4115273d9f13SBarry Smith 
4116273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4117273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4118273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4119273d9f13SBarry Smith 
4120273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4121a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4122a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4123a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4124a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4125a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4126a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4127a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4128a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4129273d9f13SBarry Smith 
41302ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4131273d9f13SBarry Smith 
413227430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4133aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
413427430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4135aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4136aa95bbe8SBarry Smith 
41371cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4138a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4139273d9f13SBarry Smith @*/
4140d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4141d71ae5a4SJacob Faibussowitsch {
4142273d9f13SBarry Smith   PetscFunctionBegin;
41436ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41446ba663aaSJed Brown   PetscValidType(B, 1);
4145cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4147273d9f13SBarry Smith }
4148273d9f13SBarry Smith 
414958d36128SBarry Smith /*@
415011a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41518f8f2f0dSBarry Smith   CSR format for the local rows.
41522fb0ec9aSBarry Smith 
4153d083f849SBarry Smith   Collective
41542fb0ec9aSBarry Smith 
41552fb0ec9aSBarry Smith   Input Parameters:
41562fb0ec9aSBarry Smith + comm - MPI communicator
415711a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41582fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4159d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4160d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4161d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4162d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41635693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41645693b835SJunchao Zhang . j    - global column indices
4165f1f2ae84SBarry Smith - a    - optional matrix values
41662fb0ec9aSBarry Smith 
41672fb0ec9aSBarry Smith   Output Parameter:
41682fb0ec9aSBarry Smith . mat - the matrix
416903bfb495SBarry Smith 
41702fb0ec9aSBarry Smith   Level: intermediate
41712fb0ec9aSBarry Smith 
41722fb0ec9aSBarry Smith   Notes:
41732ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
4174d4c8cc39SPierre Jolivet   thus you CANNOT change the matrix entries by changing the values of `a[]` after you have
4175d4c8cc39SPierre Jolivet   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41762fb0ec9aSBarry Smith 
41772ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
417812251496SSatish Balay 
41795693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4180a4bd8bc0SBarry Smith 
41815693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4182a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4183a4bd8bc0SBarry Smith 
418412251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
4185d4c8cc39SPierre Jolivet   row-major ordering, i.e., for the following matrix, the input data expected is
4186c5e4d11fSDmitry Karpeev   as shown
41872ef1f0ffSBarry Smith .vb
41882ef1f0ffSBarry Smith         1 0 0
41892ef1f0ffSBarry Smith         2 0 3     P0
41902ef1f0ffSBarry Smith        -------
41912ef1f0ffSBarry Smith         4 5 6     P1
41928f8f2f0dSBarry Smith 
41932ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
41942ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
41952ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
41962ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
41972fb0ec9aSBarry Smith 
41982ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
41992ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
42002ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
42012ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
42022ef1f0ffSBarry Smith .ve
42032ef1f0ffSBarry Smith 
4204d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
42055693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42062fb0ec9aSBarry Smith @*/
4207d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4208d71ae5a4SJacob Faibussowitsch {
42092fb0ec9aSBarry Smith   PetscFunctionBegin;
421008401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
421108401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42129566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42139566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42149566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42159566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42169566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42182fb0ec9aSBarry Smith }
42192fb0ec9aSBarry Smith 
42208f8f2f0dSBarry Smith /*@
422111a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42222ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42232ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42246a3d2595SBarry Smith 
42256a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42268f8f2f0dSBarry Smith 
42278f8f2f0dSBarry Smith   Collective
42288f8f2f0dSBarry Smith 
42298f8f2f0dSBarry Smith   Input Parameters:
42308f8f2f0dSBarry Smith + mat - the matrix
423111a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42328f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
423311a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42348f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
423511a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
423611a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42378f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42388f8f2f0dSBarry Smith . J   - column indices
42398f8f2f0dSBarry Smith - v   - matrix values
42408f8f2f0dSBarry Smith 
42412ef1f0ffSBarry Smith   Level: deprecated
42428f8f2f0dSBarry Smith 
42431cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4244a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42458f8f2f0dSBarry Smith @*/
4246d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4247d71ae5a4SJacob Faibussowitsch {
42486a3d2595SBarry Smith   PetscInt        nnz, i;
42498f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42508f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4251fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4252fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42538f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42546a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42556a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42568f8f2f0dSBarry Smith 
42578f8f2f0dSBarry Smith   PetscFunctionBegin;
4258aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
425908401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
426008401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
426108401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42628f8f2f0dSBarry Smith 
42639566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42658f8f2f0dSBarry Smith 
42668f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42674c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42684c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42694c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42704c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42714c17f1ccSBarry Smith       }
42724c17f1ccSBarry Smith     }
42738f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42748f8f2f0dSBarry Smith     Iii = Ii[i];
42758f8f2f0dSBarry Smith     ldi = ld[i];
42768f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42779566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42789566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42799566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42808f8f2f0dSBarry Smith     ad += md;
42818f8f2f0dSBarry Smith     ao += nnz - md;
42828f8f2f0dSBarry Smith   }
42838f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42848f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42859566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42869566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42879566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42889566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42899566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
42928f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
42933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42948f8f2f0dSBarry Smith }
42958f8f2f0dSBarry Smith 
42966a3d2595SBarry Smith /*@
429711a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
42986a3d2595SBarry Smith 
42996a3d2595SBarry Smith   Collective
43006a3d2595SBarry Smith 
43016a3d2595SBarry Smith   Input Parameters:
43026a3d2595SBarry Smith + mat - the matrix
43036a3d2595SBarry Smith - v   - matrix values, stored by row
43046a3d2595SBarry Smith 
43056a3d2595SBarry Smith   Level: intermediate
43066a3d2595SBarry Smith 
4307a4bd8bc0SBarry Smith   Notes:
43086a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43096a3d2595SBarry Smith 
4310a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4311a4bd8bc0SBarry Smith 
43121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4313a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43146a3d2595SBarry Smith @*/
4315d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4316d71ae5a4SJacob Faibussowitsch {
43176a3d2595SBarry Smith   PetscInt        nnz, i, m;
43186a3d2595SBarry Smith   PetscBool       nooffprocentries;
43196a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43206a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43216a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43226a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43236a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43246a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43256a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43266a3d2595SBarry Smith 
43276a3d2595SBarry Smith   PetscFunctionBegin;
43286a3d2595SBarry Smith   m = mat->rmap->n;
43296a3d2595SBarry Smith 
43306a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43316a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43326a3d2595SBarry Smith   Iii = 0;
43336a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43346a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43356a3d2595SBarry Smith     ldi = ld[i];
43366a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43376a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43386a3d2595SBarry Smith     ad += md;
4339810441c8SPierre Jolivet     if (ao) {
4340810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4341810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43426a3d2595SBarry Smith       ao += nnz - md;
4343810441c8SPierre Jolivet     }
43446a3d2595SBarry Smith     Iii += nnz;
43456a3d2595SBarry Smith   }
43466a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43476a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43486a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43496a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43506a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43516a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43526a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43536a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43546a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43556a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43576a3d2595SBarry Smith }
43586a3d2595SBarry Smith 
4359273d9f13SBarry Smith /*@C
436011a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4361273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4362273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43632ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4364273d9f13SBarry Smith 
4365d083f849SBarry Smith   Collective
4366273d9f13SBarry Smith 
4367273d9f13SBarry Smith   Input Parameters:
4368273d9f13SBarry Smith + comm  - MPI communicator
436911a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4370273d9f13SBarry Smith           This value should be the same as the local size used in creating the
4371273d9f13SBarry Smith           y vector for the matrix-vector product y = Ax.
4372273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
437345f401ebSJose E. Roman           x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4374273d9f13SBarry Smith           calculated if N is given) For square matrices n is almost always m.
437511a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
437611a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4377273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4378273d9f13SBarry Smith           (same value is used for all local rows)
4379273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4380273d9f13SBarry Smith           DIAGONAL portion of the local submatrix (possibly different for each row)
43812ef1f0ffSBarry Smith           or `NULL`, if `d_nz` is used to specify the nonzero structure.
4382273d9f13SBarry Smith           The size of this array is equal to the number of local rows, i.e 'm'.
4383273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4384273d9f13SBarry Smith           submatrix (same value is used for all local rows).
4385273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4386273d9f13SBarry Smith           OFF-DIAGONAL portion of the local submatrix (possibly different for
43872ef1f0ffSBarry Smith           each row) or `NULL`, if `o_nz` is used to specify the nonzero
4388273d9f13SBarry Smith           structure. The size of this array is equal to the number
4389273d9f13SBarry Smith           of local rows, i.e 'm'.
4390273d9f13SBarry Smith 
4391273d9f13SBarry Smith   Output Parameter:
4392273d9f13SBarry Smith . A - the matrix
4393273d9f13SBarry Smith 
439427430b45SBarry Smith   Options Database Keys:
439527430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
439627430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
439727430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
4398727bdf9bSBarry Smith                                       See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter`
4399727bdf9bSBarry Smith                                       to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
440027430b45SBarry Smith 
44012ef1f0ffSBarry Smith   Level: intermediate
44022ef1f0ffSBarry Smith 
440327430b45SBarry Smith   Notes:
440477433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4405f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
440611a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4407175b88e8SBarry Smith 
440849a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
440949a6f317SBarry Smith 
44102ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44112ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4412273d9f13SBarry Smith   storage requirements for this matrix.
4413273d9f13SBarry Smith 
441411a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4415273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4416273d9f13SBarry Smith   that argument.
4417273d9f13SBarry Smith 
4418727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
4419727bdf9bSBarry Smith   `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
4420727bdf9bSBarry Smith 
4421273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4422273d9f13SBarry Smith   (possibly both).
4423273d9f13SBarry Smith 
442433a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
4425727bdf9bSBarry Smith   first `m0` rows belong to process 0, the next `m1` rows belong to
4426727bdf9bSBarry Smith   process 1, the next `m2` rows belong to process 2, etc., where
4427727bdf9bSBarry Smith   `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores
442833a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4429273d9f13SBarry Smith 
443033a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
443133a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4432df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
443333a7c187SSatish Balay 
443433a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
443533a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
443633a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
443733a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
443833a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
443933a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
444033a7c187SSatish Balay   illustrates this concept.
444133a7c187SSatish Balay 
444233a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
444333a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
444433a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
444533a7c187SSatish Balay   local matrix (a rectangular submatrix).
4446273d9f13SBarry Smith 
44472ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4448273d9f13SBarry Smith 
444997d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44502ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4451da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4452da57b5cdSKarl Rupp .vb
44532ef1f0ffSBarry Smith   MatCreate(..., &A);
44542ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44552ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44562ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4457da57b5cdSKarl Rupp .ve
445897d05335SKris Buschelman 
4459273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4460273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4461273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4462273d9f13SBarry Smith 
44632920cce0SJacob Faibussowitsch   Example Usage:
4464273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4465273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4466273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4467efc377ccSKarl Rupp   as follows
4468273d9f13SBarry Smith 
4469273d9f13SBarry Smith .vb
4470273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4471273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4472273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4473273d9f13SBarry Smith     -------------------------------------
4474273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4475273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4476273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4477273d9f13SBarry Smith     -------------------------------------
4478273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4479273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4480273d9f13SBarry Smith .ve
4481273d9f13SBarry Smith 
4482da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4483273d9f13SBarry Smith 
4484273d9f13SBarry Smith .vb
4485273d9f13SBarry Smith       A B C
4486273d9f13SBarry Smith       D E F
4487273d9f13SBarry Smith       G H I
4488273d9f13SBarry Smith .ve
4489273d9f13SBarry Smith 
4490273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4491273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4492273d9f13SBarry Smith 
4493273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4494273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4495273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4496273d9f13SBarry Smith 
4497273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4498273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4499273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4500273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
450127430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
4502273d9f13SBarry Smith   matrix, ans [DF] as another SeqAIJ matrix.
4503273d9f13SBarry Smith 
45042ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45052ef1f0ffSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
4506273d9f13SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
45072ef1f0ffSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
4508273d9f13SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45092ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4510273d9f13SBarry Smith .vb
451127430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
451227430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
451327430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4514273d9f13SBarry Smith .ve
45152ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4516273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4517273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4518273d9f13SBarry Smith   34 values.
4519273d9f13SBarry Smith 
45202ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4521a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4522da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4523273d9f13SBarry Smith .vb
452427430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
452527430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
452627430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4527273d9f13SBarry Smith .ve
4528273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4529273d9f13SBarry Smith   hence pre-allocation is perfect.
4530273d9f13SBarry Smith 
45311cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4532727bdf9bSBarry Smith           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`,
4533727bdf9bSBarry Smith           `MatGetOwnershipRangesColumn()`, `PetscLayout`
4534273d9f13SBarry Smith @*/
4535d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4536d71ae5a4SJacob Faibussowitsch {
4537b1d57f15SBarry Smith   PetscMPIInt size;
4538273d9f13SBarry Smith 
4539273d9f13SBarry Smith   PetscFunctionBegin;
45409566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45419566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45429566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4543273d9f13SBarry Smith   if (size > 1) {
45449566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45459566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4546273d9f13SBarry Smith   } else {
45479566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45489566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4549273d9f13SBarry Smith   }
45503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4551273d9f13SBarry Smith }
4552195d93cdSBarry Smith 
45530b98dbb4SBarry Smith /*MC
45540b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix
45550b98dbb4SBarry Smith 
45560b98dbb4SBarry Smith     Synopsis:
45570b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45580b98dbb4SBarry Smith 
45590b98dbb4SBarry Smith     Not Collective
45600b98dbb4SBarry Smith 
45610b98dbb4SBarry Smith     Input Parameter:
45620b98dbb4SBarry Smith .   A - the `MATMPIAIJ` matrix
45630b98dbb4SBarry Smith 
45640b98dbb4SBarry Smith     Output Parameters:
45650b98dbb4SBarry Smith +   Ad - the diagonal portion of the matrix
45664cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45672ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45680b98dbb4SBarry Smith -   ierr - error code
45690b98dbb4SBarry Smith 
45700b98dbb4SBarry Smith      Level: advanced
45710b98dbb4SBarry Smith 
45720b98dbb4SBarry Smith     Note:
45730b98dbb4SBarry Smith     Use  `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45740b98dbb4SBarry Smith 
45751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()`
45760b98dbb4SBarry Smith M*/
45770b98dbb4SBarry Smith 
45780b98dbb4SBarry Smith /*MC
45790b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45800b98dbb4SBarry Smith 
45810b98dbb4SBarry Smith     Synopsis:
45820b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45830b98dbb4SBarry Smith 
45840b98dbb4SBarry Smith     Not Collective
45850b98dbb4SBarry Smith 
45860b98dbb4SBarry Smith     Input Parameters:
45870b98dbb4SBarry Smith +   A - the `MATMPIAIJ` matrix
45880b98dbb4SBarry Smith .   Ad - the diagonal portion of the matrix
45894cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45902ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45910b98dbb4SBarry Smith -   ierr - error code
45920b98dbb4SBarry Smith 
45930b98dbb4SBarry Smith      Level: advanced
45940b98dbb4SBarry Smith 
45951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()`
45960b98dbb4SBarry Smith M*/
45970b98dbb4SBarry Smith 
4598127ca0efSMatthew Knepley /*@C
45990ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4600127ca0efSMatthew Knepley 
46012ef1f0ffSBarry Smith   Not Collective
4602127ca0efSMatthew Knepley 
4603127ca0efSMatthew Knepley   Input Parameter:
460411a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4605127ca0efSMatthew Knepley 
4606127ca0efSMatthew Knepley   Output Parameters:
460711a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
460811a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
46092ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4610127ca0efSMatthew Knepley 
46110ab4885dSBarry Smith   Level: intermediate
46120ab4885dSBarry Smith 
461311a5261eSBarry Smith   Note:
46142ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
46152ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
46162ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4617127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4618127ca0efSMatthew Knepley 
4619fe59aa6dSJacob Faibussowitsch   Fortran Notes:
46200ab4885dSBarry Smith   `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()`
4621127ca0efSMatthew Knepley 
4622fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4623127ca0efSMatthew Knepley @*/
4624d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4625d71ae5a4SJacob Faibussowitsch {
4626195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
462704cf37c7SBarry Smith   PetscBool   flg;
4628b1d57f15SBarry Smith 
4629195d93cdSBarry Smith   PetscFunctionBegin;
46309566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
463128b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
463221e72a00SBarry Smith   if (Ad) *Ad = a->A;
463321e72a00SBarry Smith   if (Ao) *Ao = a->B;
463421e72a00SBarry Smith   if (colmap) *colmap = a->garray;
46353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4636195d93cdSBarry Smith }
4637a2243be0SBarry Smith 
4638d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4639d71ae5a4SJacob Faibussowitsch {
4640110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
46419b8102ccSHong Zhang   PetscInt    *indx;
4642110bb6e1SHong Zhang   PetscScalar *values;
4643421ddf4dSJunchao Zhang   MatType      rootType;
46449b8102ccSHong Zhang 
46459b8102ccSHong Zhang   PetscFunctionBegin;
46469566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4647110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4648110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4649110bb6e1SHong Zhang 
465048a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4651a22543b6SHong Zhang     /* Check sum(n) = N */
46521c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
465308401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4654a22543b6SHong Zhang 
46559566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46569b8102ccSHong Zhang     rstart -= m;
46579b8102ccSHong Zhang 
4658d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46599b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46609566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46619566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46629566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46639b8102ccSHong Zhang     }
46649b8102ccSHong Zhang 
46659566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46669566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46679566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46689566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46699566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46709566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46719566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46729566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4673d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46749566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46759b8102ccSHong Zhang   }
46769b8102ccSHong Zhang 
4677110bb6e1SHong Zhang   /* numeric phase */
46789566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46799b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46809566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46819b8102ccSHong Zhang     Ii = i + rstart;
46829566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46839566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46849b8102ccSHong Zhang   }
46859566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46869566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4688c5d6d63eSBarry Smith }
4689c5d6d63eSBarry Smith 
4690d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data)
4691d71ae5a4SJacob Faibussowitsch {
46926718818eSStefano Zampini   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data;
469351a7d1a8SHong Zhang 
469451a7d1a8SHong Zhang   PetscFunctionBegin;
46953ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
46969566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
46979566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
46989566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
46999566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
47009566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
47019566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
47029566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
47039566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
47049566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
47059566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
47069566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
47079566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
47089566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
47099566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
47103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
471151a7d1a8SHong Zhang }
471251a7d1a8SHong Zhang 
4713c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4714c6db04a5SJed Brown #include <petscbt.h>
47154ebed01fSBarry Smith 
4716d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4717d71ae5a4SJacob Faibussowitsch {
4718ce94432eSBarry Smith   MPI_Comm             comm;
471955d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4720b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
4721a2ea699eSBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj;
4722b1d57f15SBarry Smith   PetscInt             proc, m;
4723b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
4724b1d57f15SBarry Smith   PetscInt             k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4725b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
472655d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
472755d1abb9SHong Zhang   MPI_Status          *status;
4728fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4729dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
473055d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4731776b82aeSLisandro Dalcin   PetscContainer       container;
473255d1abb9SHong Zhang 
473355d1abb9SHong Zhang   PetscFunctionBegin;
47349566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
47359566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
47363c2c1871SHong Zhang 
47379566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47389566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
473955d1abb9SHong Zhang 
47409566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
474128b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
47429566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
47439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4744fff043a9SJunchao Zhang   aa = a_a;
4745bf0cc555SLisandro Dalcin 
474655d1abb9SHong Zhang   bi     = merge->bi;
474755d1abb9SHong Zhang   bj     = merge->bj;
474855d1abb9SHong Zhang   buf_ri = merge->buf_ri;
474955d1abb9SHong Zhang   buf_rj = merge->buf_rj;
475055d1abb9SHong Zhang 
47519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47527a2fc3feSBarry Smith   owners = merge->rowmap->range;
475355d1abb9SHong Zhang   len_s  = merge->len_s;
475455d1abb9SHong Zhang 
475555d1abb9SHong Zhang   /* send and recv matrix values */
47569566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47579566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
475855d1abb9SHong Zhang 
47599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
476055d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
476155d1abb9SHong Zhang     if (!len_s[proc]) continue;
476255d1abb9SHong Zhang     i = owners[proc];
47639566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
476455d1abb9SHong Zhang     k++;
476555d1abb9SHong Zhang   }
476655d1abb9SHong Zhang 
47679566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47689566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47699566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
477055d1abb9SHong Zhang 
47719566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47729566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
477355d1abb9SHong Zhang 
477455d1abb9SHong Zhang   /* insert mat values of mpimat */
47759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
477755d1abb9SHong Zhang 
477855d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
477955d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4780f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
478155d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4782a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
478355d1abb9SHong Zhang   }
478455d1abb9SHong Zhang 
478555d1abb9SHong Zhang   /* set values of ba */
47867a2fc3feSBarry Smith   m = merge->rowmap->n;
478755d1abb9SHong Zhang   for (i = 0; i < m; i++) {
478855d1abb9SHong Zhang     arow = owners[rank] + i;
478955d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
479055d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47919566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
479255d1abb9SHong Zhang 
479355d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
479455d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
479555d1abb9SHong Zhang     aj     = a->j + ai[arow];
4796fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
479755d1abb9SHong Zhang     nextaj = 0;
479855d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
479955d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
480055d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
480155d1abb9SHong Zhang       }
480255d1abb9SHong Zhang     }
480355d1abb9SHong Zhang 
480455d1abb9SHong Zhang     /* add received vals into ba */
480555d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
480655d1abb9SHong Zhang       /* i-th row */
480755d1abb9SHong Zhang       if (i == *nextrow[k]) {
480855d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4809f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4810f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
481155d1abb9SHong Zhang         nextaj = 0;
481255d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
481355d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
481455d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
481555d1abb9SHong Zhang           }
481655d1abb9SHong Zhang         }
48179371c9d4SSatish Balay         nextrow[k]++;
48189371c9d4SSatish Balay         nextai[k]++;
481955d1abb9SHong Zhang       }
482055d1abb9SHong Zhang     }
48219566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
482255d1abb9SHong Zhang   }
48239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
48249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
48259566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
482655d1abb9SHong Zhang 
48279566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
48289566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
48299566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
48309566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
48319566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
48323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
483355d1abb9SHong Zhang }
483438f152feSBarry Smith 
4835d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4836d71ae5a4SJacob Faibussowitsch {
483755a3bba9SHong Zhang   Mat                  B_mpi;
4838c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4839b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4840b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4841d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
4842a2f3521dSMark F. Adams   PetscInt             len, proc, *dnz, *onz, bs, cbs;
4843c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4844b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
484555d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
484658cb9c82SHong Zhang   MPI_Status          *status;
48470298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4848be0fcf8dSHong Zhang   PetscBT              lnkbt;
484951a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4850776b82aeSLisandro Dalcin   PetscContainer       container;
485102c68681SHong Zhang 
4852e5f2cdd8SHong Zhang   PetscFunctionBegin;
48539566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48543c2c1871SHong Zhang 
485538f152feSBarry Smith   /* make sure it is a PETSc comm */
48569566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48579566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
485955d1abb9SHong Zhang 
48609566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4862e5f2cdd8SHong Zhang 
48636abd8857SHong Zhang   /* determine row ownership */
48649566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48659566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48669566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48679566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48689566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
487155d1abb9SHong Zhang 
48727a2fc3feSBarry Smith   m      = merge->rowmap->n;
48737a2fc3feSBarry Smith   owners = merge->rowmap->range;
48746abd8857SHong Zhang 
48756abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48763e06a4e6SHong Zhang   len_s = merge->len_s;
487751a7d1a8SHong Zhang 
48782257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4879c2234fe3SHong Zhang   merge->nsend = 0;
4880409913e3SHong Zhang   for (proc = 0; proc < size; proc++) {
48812257cef7SHong Zhang     len_si[proc] = 0;
48823e06a4e6SHong Zhang     if (proc == rank) {
48836abd8857SHong Zhang       len_s[proc] = 0;
48843e06a4e6SHong Zhang     } else {
488502c68681SHong Zhang       len_si[proc] = owners[proc + 1] - owners[proc] + 1;
48863e06a4e6SHong Zhang       len_s[proc]  = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */
48873e06a4e6SHong Zhang     }
48883e06a4e6SHong Zhang     if (len_s[proc]) {
4889c2234fe3SHong Zhang       merge->nsend++;
48902257cef7SHong Zhang       nrows = 0;
48912257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48922257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48932257cef7SHong Zhang       }
48942257cef7SHong Zhang       len_si[proc] = 2 * (nrows + 1);
48952257cef7SHong Zhang       len += len_si[proc];
4896409913e3SHong Zhang     }
489758cb9c82SHong Zhang   }
4898409913e3SHong Zhang 
48992257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
49009566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
49019566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4902671beff6SHong Zhang 
49033e06a4e6SHong Zhang   /* post the Irecv of j-structure */
49049566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
49059566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
490602c68681SHong Zhang 
49073e06a4e6SHong Zhang   /* post the Isend of j-structure */
49089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
49093e06a4e6SHong Zhang 
49102257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
4911409913e3SHong Zhang     if (!len_s[proc]) continue;
491202c68681SHong Zhang     i = owners[proc];
49139566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
491451a7d1a8SHong Zhang     k++;
491551a7d1a8SHong Zhang   }
491651a7d1a8SHong Zhang 
49173e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
49189566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
49199566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
492002c68681SHong Zhang 
492102c68681SHong Zhang   /* send and recv i-structure */
49229566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
49239566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
492402c68681SHong Zhang 
49259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
49263e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
49272257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
492802c68681SHong Zhang     if (!len_s[proc]) continue;
49293e06a4e6SHong Zhang     /* form outgoing message for i-structure:
49303e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
49313e06a4e6SHong Zhang                [1:nrows]:           row index (global)
49323e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
49333e06a4e6SHong Zhang     */
49342257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
49353e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
49363e06a4e6SHong Zhang     buf_si[0]   = nrows;
49373e06a4e6SHong Zhang     buf_si_i[0] = 0;
49383e06a4e6SHong Zhang     nrows       = 0;
49393e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
49403e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
49413e06a4e6SHong Zhang       if (anzi) {
49423e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
49433e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
49443e06a4e6SHong Zhang         nrows++;
49453e06a4e6SHong Zhang       }
49463e06a4e6SHong Zhang     }
49479566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
494802c68681SHong Zhang     k++;
49492257cef7SHong Zhang     buf_si += len_si[proc];
495002c68681SHong Zhang   }
49512257cef7SHong Zhang 
49529566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49539566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
495402c68681SHong Zhang 
49559566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
495648a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49573e06a4e6SHong Zhang 
49589566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49599566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49609566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49619566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49629566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49639566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49649566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
496558cb9c82SHong Zhang 
4966bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
496758cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49689566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
496958cb9c82SHong Zhang   bi[0] = 0;
497058cb9c82SHong Zhang 
4971be0fcf8dSHong Zhang   /* create and initialize a linked list */
4972be0fcf8dSHong Zhang   nlnk = N + 1;
49739566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
497458cb9c82SHong Zhang 
4975bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4976bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49779566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49782205254eSKarl Rupp 
497958cb9c82SHong Zhang   current_space = free_space;
498058cb9c82SHong Zhang 
4981bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49829566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49831d79065fSBarry Smith 
49843e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49852257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49863e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49873e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4988a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49893e06a4e6SHong Zhang   }
49902257cef7SHong Zhang 
4991d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4992bcc1bcd5SHong Zhang   len = 0;
499358cb9c82SHong Zhang   for (i = 0; i < m; i++) {
499458cb9c82SHong Zhang     bnzi = 0;
499558cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
499658cb9c82SHong Zhang     arow = owners[rank] + i;
499758cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
499858cb9c82SHong Zhang     aj   = a->j + ai[arow];
49999566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
500058cb9c82SHong Zhang     bnzi += nlnk;
500158cb9c82SHong Zhang     /* add received col data into lnk */
500251a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
500355d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
50043e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
50053e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
50069566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
50073e06a4e6SHong Zhang         bnzi += nlnk;
50089371c9d4SSatish Balay         nextrow[k]++;
50099371c9d4SSatish Balay         nextai[k]++;
50103e06a4e6SHong Zhang       }
501158cb9c82SHong Zhang     }
5012bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
501358cb9c82SHong Zhang 
501458cb9c82SHong Zhang     /* if free space is not available, make more free space */
501548a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
501658cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
50179566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
50189566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
5019bcc1bcd5SHong Zhang 
502058cb9c82SHong Zhang     current_space->array += bnzi;
502158cb9c82SHong Zhang     current_space->local_used += bnzi;
502258cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
502358cb9c82SHong Zhang 
502458cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
502558cb9c82SHong Zhang   }
5026bcc1bcd5SHong Zhang 
50279566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
5028bcc1bcd5SHong Zhang 
50299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
50309566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
50319566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
5032409913e3SHong Zhang 
5033bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
50349566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
50359566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
503654b84b50SHong Zhang   if (n == PETSC_DECIDE) {
50379566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
503854b84b50SHong Zhang   } else {
50399566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
504054b84b50SHong Zhang   }
50419566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
50429566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
50439566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
5044d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
50459566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
504658cb9c82SHong Zhang 
504790431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
50486abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5049affca5deSHong Zhang   merge->bi        = bi;
5050affca5deSHong Zhang   merge->bj        = bj;
505102c68681SHong Zhang   merge->buf_ri    = buf_ri;
505202c68681SHong Zhang   merge->buf_rj    = buf_rj;
50530298fd71SBarry Smith   merge->coi       = NULL;
50540298fd71SBarry Smith   merge->coj       = NULL;
50550298fd71SBarry Smith   merge->owners_co = NULL;
5056affca5deSHong Zhang 
50579566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5058bf0cc555SLisandro Dalcin 
5059affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50609566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50619566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
50629566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50639566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50649566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5065affca5deSHong Zhang   *mpimat = B_mpi;
506638f152feSBarry Smith 
50679566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5069e5f2cdd8SHong Zhang }
507025616d81SHong Zhang 
5071cc4c1da9SBarry Smith /*@
507211a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5073d4036a1aSHong Zhang   matrices from each processor
5074d4036a1aSHong Zhang 
5075d083f849SBarry Smith   Collective
5076d4036a1aSHong Zhang 
5077d4036a1aSHong Zhang   Input Parameters:
5078d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5079d4036a1aSHong Zhang . seqmat - the input sequential matrices
508011a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
508111a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
508211a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5083d4036a1aSHong Zhang 
5084d4036a1aSHong Zhang   Output Parameter:
5085d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5086d4036a1aSHong Zhang 
5087d4036a1aSHong Zhang   Level: advanced
5088d4036a1aSHong Zhang 
508911a5261eSBarry Smith   Note:
5090d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5091d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
5092b6971eaeSBarry Smith   destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`.
50932ef1f0ffSBarry Smith 
50941cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5095d4036a1aSHong Zhang @*/
5096d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5097d71ae5a4SJacob Faibussowitsch {
50987e63b356SHong Zhang   PetscMPIInt size;
509955d1abb9SHong Zhang 
510055d1abb9SHong Zhang   PetscFunctionBegin;
51019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
51027e63b356SHong Zhang   if (size == 1) {
51039566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
51047e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
51059566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
51067e63b356SHong Zhang     } else {
51079566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
51087e63b356SHong Zhang     }
51099566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51103ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
51117e63b356SHong Zhang   }
51129566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
511348a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
51149566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
51159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
511755d1abb9SHong Zhang }
51184ebed01fSBarry Smith 
5119bc08b0f1SBarry Smith /*@
51202920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
51218a9c020eSBarry Smith 
51228a9c020eSBarry Smith   Not Collective
51238a9c020eSBarry Smith 
51242fe279fdSBarry Smith   Input Parameter:
512520f4b53cSBarry Smith . A - the matrix
51268a9c020eSBarry Smith 
51278a9c020eSBarry Smith   Output Parameter:
51288a9c020eSBarry Smith . A_loc - the local sequential matrix generated
51298a9c020eSBarry Smith 
51308a9c020eSBarry Smith   Level: developer
51318a9c020eSBarry Smith 
51328a9c020eSBarry Smith   Notes:
51332920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
51342920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
51352920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
51362920cce0SJacob Faibussowitsch 
513711a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51388a9c020eSBarry Smith 
51392920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
51402920cce0SJacob Faibussowitsch 
514111a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
51428a9c020eSBarry Smith 
51431cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
51448a9c020eSBarry Smith @*/
5145d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5146d71ae5a4SJacob Faibussowitsch {
51478a9c020eSBarry Smith   PetscBool mpi;
51488a9c020eSBarry Smith 
51498a9c020eSBarry Smith   PetscFunctionBegin;
51508a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51518a9c020eSBarry Smith   if (mpi) {
51528a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51538a9c020eSBarry Smith   } else {
51548a9c020eSBarry Smith     *A_loc = A;
51558a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51568a9c020eSBarry Smith   }
51573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51588a9c020eSBarry Smith }
51598a9c020eSBarry Smith 
51608a9c020eSBarry Smith /*@
51612920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
516225616d81SHong Zhang 
516332fba14fSHong Zhang   Not Collective
516425616d81SHong Zhang 
516525616d81SHong Zhang   Input Parameters:
516625616d81SHong Zhang + A     - the matrix
516711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
516825616d81SHong Zhang 
516925616d81SHong Zhang   Output Parameter:
517025616d81SHong Zhang . A_loc - the local sequential matrix generated
517125616d81SHong Zhang 
517225616d81SHong Zhang   Level: developer
517325616d81SHong Zhang 
517477c65a98SStefano Zampini   Notes:
51752920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51762920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51772920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51782920cce0SJacob Faibussowitsch 
517911a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51808a9c020eSBarry Smith 
51812920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51822920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51832920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51842920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
518577c65a98SStefano Zampini 
51861cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
518725616d81SHong Zhang @*/
5188d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5189d71ae5a4SJacob Faibussowitsch {
519001b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5191b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5192b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5193ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5194ce496241SStefano Zampini   PetscScalar       *ca, *cam;
519577c65a98SStefano Zampini   PetscMPIInt        size;
5196d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
51975a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
51988661ff28SBarry Smith   PetscBool          match;
519925616d81SHong Zhang 
520025616d81SHong Zhang   PetscFunctionBegin;
52019566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
520228b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
52039566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
520477c65a98SStefano Zampini   if (size == 1) {
520577c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52069566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
520777c65a98SStefano Zampini       *A_loc = mpimat->A;
520877c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52099566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
521077c65a98SStefano Zampini     }
52113ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
521277c65a98SStefano Zampini   }
521370a9ba44SHong Zhang 
52149566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5215f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5216f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
52179371c9d4SSatish Balay   ai = a->i;
52189371c9d4SSatish Balay   aj = a->j;
52199371c9d4SSatish Balay   bi = b->i;
52209371c9d4SSatish Balay   bj = b->j;
52219566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
52229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5223ce496241SStefano Zampini   aa = aav;
5224ce496241SStefano Zampini   ba = bav;
522501b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
52269566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5227dea91ad1SHong Zhang     ci[0] = 0;
5228ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
52299566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
52309566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5231dea91ad1SHong Zhang     k = 0;
523201b7ae99SHong Zhang     for (i = 0; i < am; i++) {
52335a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52345a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
523501b7ae99SHong Zhang       /* off-diagonal portion of A */
52365a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52375a7d977cSHong Zhang         col = cmap[*bj];
52385a7d977cSHong Zhang         if (col >= cstart) break;
52399371c9d4SSatish Balay         cj[k] = col;
52409371c9d4SSatish Balay         bj++;
52415a7d977cSHong Zhang         ca[k++] = *ba++;
52425a7d977cSHong Zhang       }
52435a7d977cSHong Zhang       /* diagonal portion of A */
52445a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
52455a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
52465a7d977cSHong Zhang         ca[k++] = *aa++;
52475a7d977cSHong Zhang       }
52485a7d977cSHong Zhang       /* off-diagonal portion of A */
52495a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52505a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52515a7d977cSHong Zhang         ca[k++] = *ba++;
52525a7d977cSHong Zhang       }
525325616d81SHong Zhang     }
5254dea91ad1SHong Zhang     /* put together the new matrix */
52559566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5256dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5257dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5258dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5259e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5260e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5261dea91ad1SHong Zhang     mat->nonew   = 0;
52625a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52635a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5264fff043a9SJunchao Zhang     ci  = mat->i;
5265fff043a9SJunchao Zhang     cj  = mat->j;
52669566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52675a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52685a7d977cSHong Zhang       /* off-diagonal portion of A */
52695a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52705a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52715a7d977cSHong Zhang         col = cmap[*bj];
52725a7d977cSHong Zhang         if (col >= cstart) break;
52739371c9d4SSatish Balay         *cam++ = *ba++;
52749371c9d4SSatish Balay         bj++;
52755a7d977cSHong Zhang       }
52765a7d977cSHong Zhang       /* diagonal portion of A */
5277ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5278a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52795a7d977cSHong Zhang       /* off-diagonal portion of A */
5280f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52819371c9d4SSatish Balay         *cam++ = *ba++;
52829371c9d4SSatish Balay         bj++;
5283f33d1a9aSHong Zhang       }
52845a7d977cSHong Zhang     }
52859566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
528698921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52879566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52889566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52899566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
529125616d81SHong Zhang }
529225616d81SHong Zhang 
5293ed502f03SStefano Zampini /*@
529411a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52954cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5296ed502f03SStefano Zampini 
5297ed502f03SStefano Zampini   Not Collective
5298ed502f03SStefano Zampini 
5299ed502f03SStefano Zampini   Input Parameters:
5300ed502f03SStefano Zampini + A     - the matrix
530111a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5302ed502f03SStefano Zampini 
5303d8d19677SJose E. Roman   Output Parameters:
53042ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5305ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5306ed502f03SStefano Zampini 
5307ed502f03SStefano Zampini   Level: developer
5308ed502f03SStefano Zampini 
530911a5261eSBarry Smith   Note:
53102ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
53114cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5312ed502f03SStefano Zampini 
53131cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5314ed502f03SStefano Zampini @*/
5315d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5316d71ae5a4SJacob Faibussowitsch {
5317ed502f03SStefano Zampini   Mat             Ao, Ad;
5318ed502f03SStefano Zampini   const PetscInt *cmap;
5319ed502f03SStefano Zampini   PetscMPIInt     size;
5320ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5321ed502f03SStefano Zampini 
5322ed502f03SStefano Zampini   PetscFunctionBegin;
53239566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
53249566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5325ed502f03SStefano Zampini   if (size == 1) {
5326ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
53279566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5328ed502f03SStefano Zampini       *A_loc = Ad;
5329ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53309566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5331ed502f03SStefano Zampini     }
53329566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
53333ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5334ed502f03SStefano Zampini   }
53359566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
53369566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5337ed502f03SStefano Zampini   if (f) {
53389566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5339ed502f03SStefano Zampini   } else {
5340ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5341ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5342ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5343ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5344ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5345ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5346ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5347ed502f03SStefano Zampini     PetscScalar       *ca;
5348ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5349ed502f03SStefano Zampini 
53509566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53519566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53529566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53539566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5354ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5355ed502f03SStefano Zampini       PetscInt k;
53569566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53579566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53589566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5359ed502f03SStefano Zampini       ci[0] = 0;
5360ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5361ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5362ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5363ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5364ed502f03SStefano Zampini         /* diagonal portion of A */
5365ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5366ed502f03SStefano Zampini           cj[k] = *aj++;
5367ed502f03SStefano Zampini           ca[k] = *aa++;
5368ed502f03SStefano Zampini         }
5369ed502f03SStefano Zampini         /* off-diagonal portion of A */
5370ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5371ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5372ed502f03SStefano Zampini           ca[k] = *ba++;
5373ed502f03SStefano Zampini         }
5374ed502f03SStefano Zampini       }
5375ed502f03SStefano Zampini       /* put together the new matrix */
53769566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5377ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5378ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5379ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5380ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5381ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5382ed502f03SStefano Zampini       c->nonew   = 0;
53839566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5384ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53859566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5386ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5387ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5388ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5389ed502f03SStefano Zampini         /* diagonal portion of A */
5390ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5391ed502f03SStefano Zampini         /* off-diagonal portion of A */
5392ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5393ed502f03SStefano Zampini       }
53949566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
539598921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53969566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
53979566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5398ed502f03SStefano Zampini     if (glob) {
5399ed502f03SStefano Zampini       PetscInt cst, *gidx;
5400ed502f03SStefano Zampini 
54019566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
54029566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5403ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5404ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
54059566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5406ed502f03SStefano Zampini     }
5407ed502f03SStefano Zampini   }
54089566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
54093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5410ed502f03SStefano Zampini }
5411ed502f03SStefano Zampini 
541232fba14fSHong Zhang /*@C
541311a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
541432fba14fSHong Zhang 
541532fba14fSHong Zhang   Not Collective
541632fba14fSHong Zhang 
541732fba14fSHong Zhang   Input Parameters:
541832fba14fSHong Zhang + A     - the matrix
541911a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
542020f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
542120f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
542232fba14fSHong Zhang 
542332fba14fSHong Zhang   Output Parameter:
542432fba14fSHong Zhang . A_loc - the local sequential matrix generated
542532fba14fSHong Zhang 
542632fba14fSHong Zhang   Level: developer
542732fba14fSHong Zhang 
54281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
542932fba14fSHong Zhang @*/
5430d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5431d71ae5a4SJacob Faibussowitsch {
543232fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
543332fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
543432fba14fSHong Zhang   IS          isrowa, iscola;
543532fba14fSHong Zhang   Mat        *aloc;
54364a2b5492SBarry Smith   PetscBool   match;
543732fba14fSHong Zhang 
543832fba14fSHong Zhang   PetscFunctionBegin;
54399566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
544028b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
54419566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
544232fba14fSHong Zhang   if (!row) {
54439371c9d4SSatish Balay     start = A->rmap->rstart;
54449371c9d4SSatish Balay     end   = A->rmap->rend;
54459566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
544632fba14fSHong Zhang   } else {
544732fba14fSHong Zhang     isrowa = *row;
544832fba14fSHong Zhang   }
544932fba14fSHong Zhang   if (!col) {
5450d0f46423SBarry Smith     start = A->cmap->rstart;
545132fba14fSHong Zhang     cmap  = a->garray;
5452d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5453d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54549566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
545532fba14fSHong Zhang     ncols = 0;
545632fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
545732fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
545832fba14fSHong Zhang       else break;
545932fba14fSHong Zhang     }
546032fba14fSHong Zhang     imark = i;
546132fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
546232fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54639566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
546432fba14fSHong Zhang   } else {
546532fba14fSHong Zhang     iscola = *col;
546632fba14fSHong Zhang   }
546732fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54689566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
546932fba14fSHong Zhang     aloc[0] = *A_loc;
547032fba14fSHong Zhang   }
54719566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5472109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54739566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5474109e0772SStefano Zampini   }
547532fba14fSHong Zhang   *A_loc = aloc[0];
54769566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
547748a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
547848a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54799566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
548132fba14fSHong Zhang }
548232fba14fSHong Zhang 
54835c65b9ecSFande Kong /*
54845c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54855c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54865c65b9ecSFande Kong  * on a global size.
54875c65b9ecSFande Kong  * */
5488ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5489d71ae5a4SJacob Faibussowitsch {
54905c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5491f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5492131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5493131c27b5Sprj-   PetscMPIInt            owner;
54945c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54955c65b9ecSFande Kong   const PetscInt        *lrowindices;
54965c65b9ecSFande Kong   PetscSF                sf, osf;
54975c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
54985c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
54995c65b9ecSFande Kong   MPI_Comm               comm;
55005c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5501fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
55025c65b9ecSFande Kong 
55035c65b9ecSFande Kong   PetscFunctionBegin;
55049566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
55055c65b9ecSFande Kong   /* plocalsize is the number of roots
55065c65b9ecSFande Kong    * nrows is the number of leaves
55075c65b9ecSFande Kong    * */
55089566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
55099566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
55109566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
55119566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
55125c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55135c65b9ecSFande Kong     /* Find a remote index and an owner for a row
55145c65b9ecSFande Kong      * The row could be local or remote
55155c65b9ecSFande Kong      * */
551634bcad68SFande Kong     owner = 0;
551734bcad68SFande Kong     lidx  = 0;
55189566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
55195c65b9ecSFande Kong     iremote[i].index = lidx;
55205c65b9ecSFande Kong     iremote[i].rank  = owner;
55215c65b9ecSFande Kong   }
55225c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
55239566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5524f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
55255c65b9ecSFande Kong    * offsets
55265c65b9ecSFande Kong    * */
55279566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55289566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55299566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5530bc8e477aSFande Kong 
55319566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
55329566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
55339566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
55345c65b9ecSFande Kong   roffsets[0] = 0;
55355c65b9ecSFande Kong   roffsets[1] = 0;
55365c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
55374cf0e950SBarry Smith     /* diagonal */
55385c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
55394cf0e950SBarry Smith     /* off-diagonal */
55405c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
55415c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
55425c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
55435c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
55445c65b9ecSFande Kong   }
55459566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
55469566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
55475c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
55489566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55499566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55509566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55519566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55529566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55539566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55549566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55555c65b9ecSFande Kong   dntotalcols = 0;
55565c65b9ecSFande Kong   ontotalcols = 0;
5557bc8e477aSFande Kong   ncol        = 0;
55585c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55595c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5560bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55614cf0e950SBarry Smith     /* diagonal */
55625c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55634cf0e950SBarry Smith     /* off-diagonal */
55645c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55655c65b9ecSFande Kong   }
55665c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55675c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55685c65b9ecSFande Kong    * */
55699566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55709566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55719566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55725c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55734cf0e950SBarry Smith   /* diagonal */
55749566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55754cf0e950SBarry Smith   /* off-diagonal */
55769566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55774cf0e950SBarry Smith   /* diagonal */
55789566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55794cf0e950SBarry Smith   /* off-diagonal */
55809566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55815c65b9ecSFande Kong   dntotalcols = 0;
55825c65b9ecSFande Kong   ontotalcols = 0;
55835c65b9ecSFande Kong   ntotalcols  = 0;
55845c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
558534bcad68SFande Kong     owner = 0;
55869566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55875c65b9ecSFande Kong     /* Set iremote for diag matrix */
55885c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55895c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55905c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55915c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55925c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55935c65b9ecSFande Kong     }
55944cf0e950SBarry Smith     /* off-diagonal */
55955c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
55965c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
55975c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
55985c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
55995c65b9ecSFande Kong     }
56005c65b9ecSFande Kong   }
56019566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
56029566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
56039566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
56049566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
56055c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
56065c65b9ecSFande Kong    * Diag matrix
56075c65b9ecSFande Kong    * */
56089566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
56099566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
56109566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
56115c65b9ecSFande Kong 
56129566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
56134cf0e950SBarry Smith   /* off-diagonal */
56149566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
56159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
56169566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
56179566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56194cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
56209566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56219566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56229566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
56235c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
56245c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
56259566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56265c65b9ecSFande Kong   /* We want P_oth store global indices */
56279566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
56285c65b9ecSFande Kong   /* Use memory scalable approach */
56299566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
56309566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
56319566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56329566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56335c65b9ecSFande Kong   /* Convert back to local indices */
56345c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
56359566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56365c65b9ecSFande Kong   nout = 0;
56379566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
563808401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
56399566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
56405c65b9ecSFande Kong   /* Exchange values */
56419566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56429566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56455c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
56465c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
56479566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
56489566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56495c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56509566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56519566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56529566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56539566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56555c65b9ecSFande Kong }
56565c65b9ecSFande Kong 
56575c65b9ecSFande Kong /*
56585c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56595c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56605c65b9ecSFande Kong  * */
5661d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5662d71ae5a4SJacob Faibussowitsch {
56635c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5664bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5665bc8e477aSFande Kong   IS          rows, map;
5666bc8e477aSFande Kong   PetscHMapI  hamp;
5667bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56685c65b9ecSFande Kong   MPI_Comm    comm;
56695c65b9ecSFande Kong   PetscSF     sf, osf;
5670bc8e477aSFande Kong   PetscBool   has;
56715c65b9ecSFande Kong 
56725c65b9ecSFande Kong   PetscFunctionBegin;
56739566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56749566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56755c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56765c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56775c65b9ecSFande Kong    * */
56785c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56795c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5680eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56819566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5682bc8e477aSFande Kong     count = 0;
5683bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5684bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5685bc8e477aSFande Kong       key = a->garray[i] / dof;
56869566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5687bc8e477aSFande Kong       if (!has) {
5688bc8e477aSFande Kong         mapping[i] = count;
56899566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5690bc8e477aSFande Kong       } else {
5691bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5692bc8e477aSFande Kong         mapping[i] = count - 1;
56935c65b9ecSFande Kong       }
5694bc8e477aSFande Kong     }
56959566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
56969566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5697eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
56989566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
56995c65b9ecSFande Kong     off = 0;
57009566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
57019566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
57029566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
57039566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
57045c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
57059566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
57069566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
57079566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
57089566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
57099566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
57105c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
57115c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
571235cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5713fff043a9SJunchao Zhang      */
5714fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5715fff043a9SJunchao Zhang 
57169566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
57179566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
571808401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
57195c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
57205c65b9ecSFande Kong     /* Update values in place */
57219566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
57229566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
57239566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57249566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57259566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57269566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57279566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
57289566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
57296718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
57309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
57313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57325c65b9ecSFande Kong }
57335c65b9ecSFande Kong 
573425616d81SHong Zhang /*@C
573520f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
573625616d81SHong Zhang 
5737c3339decSBarry Smith   Collective
573825616d81SHong Zhang 
573925616d81SHong Zhang   Input Parameters:
574011a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
574111a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
574211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
574325616d81SHong Zhang 
5744f1a722f8SMatthew G. Knepley   Output Parameters:
574527430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
574627430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5747f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
574825616d81SHong Zhang 
574925616d81SHong Zhang   Level: developer
575025616d81SHong Zhang 
575120f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
575225616d81SHong Zhang @*/
5753d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5754d71ae5a4SJacob Faibussowitsch {
5755899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5756b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
575725616d81SHong Zhang   IS          isrowb, iscolb;
57580298fd71SBarry Smith   Mat        *bseq = NULL;
575925616d81SHong Zhang 
576025616d81SHong Zhang   PetscFunctionBegin;
576120f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
576220f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57639566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
576425616d81SHong Zhang 
576525616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5766d0f46423SBarry Smith     start = A->cmap->rstart;
576725616d81SHong Zhang     cmap  = a->garray;
5768d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5769d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57709566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
577125616d81SHong Zhang     ncols = 0;
57720390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
577325616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
577425616d81SHong Zhang       else break;
577525616d81SHong Zhang     }
577625616d81SHong Zhang     imark = i;
57770390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57780390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57799566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57809566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
578125616d81SHong Zhang   } else {
578208401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57839371c9d4SSatish Balay     isrowb = *rowb;
57849371c9d4SSatish Balay     iscolb = *colb;
57859566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
578625616d81SHong Zhang     bseq[0] = *B_seq;
578725616d81SHong Zhang   }
57889566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
578925616d81SHong Zhang   *B_seq = bseq[0];
57909566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
579125616d81SHong Zhang   if (!rowb) {
57929566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
579325616d81SHong Zhang   } else {
579425616d81SHong Zhang     *rowb = isrowb;
579525616d81SHong Zhang   }
579625616d81SHong Zhang   if (!colb) {
57979566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
579825616d81SHong Zhang   } else {
579925616d81SHong Zhang     *colb = iscolb;
580025616d81SHong Zhang   }
58019566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
58023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
580325616d81SHong Zhang }
5804429d309bSHong Zhang 
5805f8487c73SHong Zhang /*
580627430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
580701b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5808429d309bSHong Zhang 
5809c3339decSBarry Smith     Collective
5810429d309bSHong Zhang 
5811429d309bSHong Zhang    Input Parameters:
581227430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
581327430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5814429d309bSHong Zhang 
5815429d309bSHong Zhang    Output Parameter:
58160298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
58170298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
58180298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5819598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5820429d309bSHong Zhang 
582111a5261eSBarry Smith     Developer Note:
582211a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
58236eb45d04SBarry Smith      for this matrix. This is not desirable..
58246eb45d04SBarry Smith 
5825429d309bSHong Zhang     Level: developer
5826429d309bSHong Zhang 
5827f8487c73SHong Zhang */
5828d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5829d71ae5a4SJacob Faibussowitsch {
5830899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
583187025532SHong Zhang   Mat_SeqAIJ        *b_oth;
58324b8d542aSHong Zhang   VecScatter         ctx;
5833ce94432eSBarry Smith   MPI_Comm           comm;
58343515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
58353515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5836277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
5837f4259b30SLisandro Dalcin   PetscInt           i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len;
5838277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5839ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5840ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5841429d309bSHong Zhang 
5842429d309bSHong Zhang   PetscFunctionBegin;
58439566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
58449566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5845a7c7454dSHong Zhang 
584620f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
584720f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58489566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58499566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5850a6b2eed2SHong Zhang 
5851ec07b8f8SHong Zhang   if (size == 1) {
5852ec07b8f8SHong Zhang     startsj_s = NULL;
5853ec07b8f8SHong Zhang     bufa_ptr  = NULL;
585452f7967eSHong Zhang     *B_oth    = NULL;
58553ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5856ec07b8f8SHong Zhang   }
5857ec07b8f8SHong Zhang 
5858fa83eaafSHong Zhang   ctx = a->Mvctx;
58594b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58604b8d542aSHong Zhang 
58619566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58623515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58639566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58649566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5866ddea5d60SJunchao Zhang   rwaits = reqs;
58678e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5868429d309bSHong Zhang 
5869b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5870429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5871a6b2eed2SHong Zhang     /* i-array */
5872a6b2eed2SHong Zhang     /*  post receives */
58739566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5874a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
587574268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5876e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58779566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5878429d309bSHong Zhang     }
5879a6b2eed2SHong Zhang 
5880a6b2eed2SHong Zhang     /* pack the outgoing message */
58819566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58822205254eSKarl Rupp 
58832205254eSKarl Rupp     sstartsj[0] = 0;
58842205254eSKarl Rupp     rstartsj[0] = 0;
5885a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58863515ee7fSJunchao Zhang     if (nsends) {
58873515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58889566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58893515ee7fSJunchao Zhang     }
5890a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58913515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5892e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
589387025532SHong Zhang       for (j = 0; j < nrows; j++) {
5894d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5895e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
58969566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
58972205254eSKarl Rupp 
5898e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
58992205254eSKarl Rupp 
5900e42f35eeSHong Zhang           len += ncols;
59019566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5902e42f35eeSHong Zhang         }
5903a6b2eed2SHong Zhang         k++;
5904429d309bSHong Zhang       }
59059566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
59062205254eSKarl Rupp 
5907dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5908429d309bSHong Zhang     }
590987025532SHong Zhang     /* recvs and sends of i-array are completed */
59109566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59119566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5912e42f35eeSHong Zhang 
5913a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
59149566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
59159566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5916a6b2eed2SHong Zhang 
591787025532SHong Zhang     /* create i-array of B_oth */
59189566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
59192205254eSKarl Rupp 
592087025532SHong Zhang     b_othi[0] = 0;
5921a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5922a6b2eed2SHong Zhang     k         = 0;
5923a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
59243515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
59253515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
592687025532SHong Zhang       for (j = 0; j < nrows; j++) {
592787025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
59289566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5929f91af8c7SBarry Smith         k++;
5930a6b2eed2SHong Zhang       }
5931dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5932a6b2eed2SHong Zhang     }
59339566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5934a6b2eed2SHong Zhang 
59356aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
59369566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
59379566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5938a6b2eed2SHong Zhang 
593987025532SHong Zhang     /* j-array */
5940a6b2eed2SHong Zhang     /*  post receives of j-array */
5941a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
594287025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59439566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5944a6b2eed2SHong Zhang     }
5945e42f35eeSHong Zhang 
5946e42f35eeSHong Zhang     /* pack the outgoing message j-array */
59473515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5948a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5949e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5950a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
595187025532SHong Zhang       for (j = 0; j < nrows; j++) {
5952d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5953e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59549566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5955ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59569566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5957e42f35eeSHong Zhang         }
595887025532SHong Zhang       }
59599566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
596087025532SHong Zhang     }
596187025532SHong Zhang 
596287025532SHong Zhang     /* recvs and sends of j-array are completed */
59639566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
596487025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5965b7f45c76SHong Zhang     sstartsj = *startsj_s;
59661d79065fSBarry Smith     rstartsj = *startsj_r;
596787025532SHong Zhang     bufa     = *bufa_ptr;
596887025532SHong Zhang     b_oth    = (Mat_SeqAIJ *)(*B_oth)->data;
59699566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5970ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
597187025532SHong Zhang 
597287025532SHong Zhang   /* a-array */
597387025532SHong Zhang   /*  post receives of a-array */
597487025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
597587025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59769566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
597787025532SHong Zhang   }
5978e42f35eeSHong Zhang 
5979e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59803515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
598187025532SHong Zhang   for (i = 0; i < nsends; i++) {
5982e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
598387025532SHong Zhang     bufA  = bufa + sstartsj[i];
598487025532SHong Zhang     for (j = 0; j < nrows; j++) {
5985d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5986e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59879566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5988ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59899566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5990e42f35eeSHong Zhang       }
5991a6b2eed2SHong Zhang     }
59929566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5993a6b2eed2SHong Zhang   }
599487025532SHong Zhang   /* recvs and sends of a-array are completed */
59959566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59969566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
5997a6b2eed2SHong Zhang 
599887025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5999a6b2eed2SHong Zhang     /* put together the new matrix */
60009566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
6001a6b2eed2SHong Zhang 
6002a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
6003a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
600487025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
6005e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
6006e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
600787025532SHong Zhang     b_oth->nonew   = 0;
6008a6b2eed2SHong Zhang 
60099566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
6010b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
60119566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
60129566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
6013dea91ad1SHong Zhang     } else {
6014b7f45c76SHong Zhang       *startsj_s = sstartsj;
60151d79065fSBarry Smith       *startsj_r = rstartsj;
601687025532SHong Zhang       *bufa_ptr  = bufa;
601787025532SHong Zhang     }
6018fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
60199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
6020dea91ad1SHong Zhang   }
60213515ee7fSJunchao Zhang 
60229566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
60239566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
60249566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
60253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6026429d309bSHong Zhang }
6027ccd8e176SBarry Smith 
6028cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
6029cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
6030ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
60319779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
6032a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
6033191b95cbSRichard Tran Mills #endif
6034ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
6035cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
60365d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6037cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
60385d7652ecSHong Zhang #endif
6039d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
6040d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
6041d24d4204SJose E. Roman #endif
604263c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
604363c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
604463c07aadSStefano Zampini #endif
60453338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
60463338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60473338378cSStefano Zampini #endif
6048d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6049d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6050d5e393b6SSuyash Tandon #endif
60513d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60523d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60533d0639e7SStefano Zampini #endif
6054d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60554222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60564222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
605717667f90SBarry Smith 
6058fc4dec0aSBarry Smith /*
6059fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6060fc4dec0aSBarry Smith 
6061fc4dec0aSBarry Smith                n                       p                          p
60622da392ccSBarry Smith         [             ]       [             ]         [                 ]
60632da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60642da392ccSBarry Smith         [             ]       [             ]         [                 ]
6065fc4dec0aSBarry Smith 
6066fc4dec0aSBarry Smith */
6067d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6068d71ae5a4SJacob Faibussowitsch {
6069fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6070fc4dec0aSBarry Smith 
6071fc4dec0aSBarry Smith   PetscFunctionBegin;
60729566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60739566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
60749566063dSJacob Faibussowitsch   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct));
60759566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60769566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60777fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60789566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60799566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6081fc4dec0aSBarry Smith }
6082fc4dec0aSBarry Smith 
6083d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6084d71ae5a4SJacob Faibussowitsch {
60856718818eSStefano Zampini   PetscBool cisdense;
6086fc4dec0aSBarry Smith 
6087fc4dec0aSBarry Smith   PetscFunctionBegin;
608808401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60899566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60909566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6091d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
609248a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60939566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6094f75ecaa4SHong Zhang 
60954222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
60963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6097fc4dec0aSBarry Smith }
6098fc4dec0aSBarry Smith 
6099d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6100d71ae5a4SJacob Faibussowitsch {
61014222ddf1SHong Zhang   Mat_Product *product = C->product;
61024222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6103fc4dec0aSBarry Smith 
6104fc4dec0aSBarry Smith   PetscFunctionBegin;
610520f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
610620f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
61074222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
61084222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
61093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6110fc4dec0aSBarry Smith }
6111fc4dec0aSBarry Smith 
6112d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6113d71ae5a4SJacob Faibussowitsch {
61144222ddf1SHong Zhang   Mat_Product *product = C->product;
61154222ddf1SHong Zhang 
61164222ddf1SHong Zhang   PetscFunctionBegin;
611748a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
61183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61194222ddf1SHong Zhang }
6120394ed5ebSJunchao Zhang 
612127430b45SBarry Smith /*
612227430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6123394ed5ebSJunchao Zhang 
6124394ed5ebSJunchao Zhang   Input Parameters:
6125394ed5ebSJunchao Zhang 
6126651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6127651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6128394ed5ebSJunchao Zhang 
6129158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6130394ed5ebSJunchao Zhang 
6131394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6132394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6133394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6134394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6135394ed5ebSJunchao Zhang 
6136394ed5ebSJunchao Zhang     Similar for Set2.
6137394ed5ebSJunchao Zhang 
6138394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6139394ed5ebSJunchao Zhang 
6140158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6141394ed5ebSJunchao Zhang 
6142394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6143394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6144394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6145394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6146394ed5ebSJunchao Zhang */
6147d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6148d71ae5a4SJacob Faibussowitsch {
6149394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6150394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6151394ed5ebSJunchao Zhang 
6152394ed5ebSJunchao Zhang   PetscFunctionBegin;
61539566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6154394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6155394ed5ebSJunchao Zhang   i[0]        = 0;
6156394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6157394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6158394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6159394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6160394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6161394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6162394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6163394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6164394ed5ebSJunchao Zhang         imap1[t1] = t;
6165394ed5ebSJunchao Zhang         imap2[t2] = t;
6166394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6167394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61689371c9d4SSatish Balay         t1++;
61699371c9d4SSatish Balay         t2++;
61709371c9d4SSatish Balay         t++;
6171394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6172394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6173394ed5ebSJunchao Zhang         imap1[t1] = t;
6174394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61759371c9d4SSatish Balay         t1++;
61769371c9d4SSatish Balay         t++;
6177394ed5ebSJunchao Zhang       } else {
6178394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6179394ed5ebSJunchao Zhang         imap2[t2] = t;
6180394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61819371c9d4SSatish Balay         t2++;
61829371c9d4SSatish Balay         t++;
6183394ed5ebSJunchao Zhang       }
6184394ed5ebSJunchao Zhang     }
6185394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6186394ed5ebSJunchao Zhang     while (b1 < e1) {
6187394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6188394ed5ebSJunchao Zhang       imap1[t1] = t;
6189394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61909371c9d4SSatish Balay       t1++;
61919371c9d4SSatish Balay       t++;
6192394ed5ebSJunchao Zhang     }
6193394ed5ebSJunchao Zhang     while (b2 < e2) {
6194394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6195394ed5ebSJunchao Zhang       imap2[t2] = t;
6196394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
61979371c9d4SSatish Balay       t2++;
61989371c9d4SSatish Balay       t++;
6199394ed5ebSJunchao Zhang     }
6200394ed5ebSJunchao Zhang     i[r + 1] = t;
6201394ed5ebSJunchao Zhang   }
62023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6203394ed5ebSJunchao Zhang }
6204394ed5ebSJunchao Zhang 
620527430b45SBarry Smith /*
620627430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6207394ed5ebSJunchao Zhang 
6208394ed5ebSJunchao Zhang   Input Parameters:
6209394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6210394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6211394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6212394ed5ebSJunchao Zhang 
6213394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6214394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6215394ed5ebSJunchao Zhang 
6216394ed5ebSJunchao Zhang   Output Parameters:
6217394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6218394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6219394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6220394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6221394ed5ebSJunchao Zhang 
6222394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6223158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6224158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6225394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6226394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6227394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6228394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6229394ed5ebSJunchao Zhang 
6230394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6231394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6232394ed5ebSJunchao Zhang 
6233394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6234394ed5ebSJunchao Zhang 
6235158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6236394ed5ebSJunchao Zhang */
6237d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6238d71ae5a4SJacob Faibussowitsch {
6239394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6240394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6241394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6242394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6243394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6244394ed5ebSJunchao Zhang 
6245394ed5ebSJunchao Zhang   PetscFunctionBegin;
62469566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62479566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6248394ed5ebSJunchao Zhang   m = rend - rstart;
6249394ed5ebSJunchao Zhang 
6250651b1cf9SStefano Zampini   /* Skip negative rows */
6251651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62529371c9d4SSatish Balay     if (i[k] >= 0) break;
6253394ed5ebSJunchao Zhang 
6254394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6255394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6256394ed5ebSJunchao Zhang   */
6257394ed5ebSJunchao Zhang   while (k < n) {
6258394ed5ebSJunchao Zhang     row = i[k];
6259394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62609371c9d4SSatish Balay     for (s = k; s < n; s++)
62619371c9d4SSatish Balay       if (i[s] != row) break;
6262651b1cf9SStefano Zampini 
6263651b1cf9SStefano Zampini     /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */
6264394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
6265651b1cf9SStefano Zampini       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT;
626654c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6267394ed5ebSJunchao Zhang     }
62689566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6269158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6270394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6271394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6272394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6273394ed5ebSJunchao Zhang 
6274394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6275394ed5ebSJunchao Zhang     Atot += mid - k;
6276394ed5ebSJunchao Zhang     Btot += s - mid;
6277394ed5ebSJunchao Zhang 
6278651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6279394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6280394ed5ebSJunchao Zhang       col = j[p];
62819371c9d4SSatish Balay       do {
6282651b1cf9SStefano Zampini         j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */
62839371c9d4SSatish Balay         p++;
6284651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6285394ed5ebSJunchao Zhang       Annz++;
6286394ed5ebSJunchao Zhang     }
6287394ed5ebSJunchao Zhang 
6288651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6289394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6290394ed5ebSJunchao Zhang       col = j[p];
6291d71ae5a4SJacob Faibussowitsch       do {
6292d71ae5a4SJacob Faibussowitsch         p++;
6293d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6294394ed5ebSJunchao Zhang       Bnnz++;
6295394ed5ebSJunchao Zhang     }
6296394ed5ebSJunchao Zhang     k = s;
6297394ed5ebSJunchao Zhang   }
6298394ed5ebSJunchao Zhang 
6299394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6300158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6301158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6302158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6303158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6304394ed5ebSJunchao Zhang 
63056aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6306394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6307394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6308394ed5ebSJunchao Zhang     k   = rowBegin[r];
6309394ed5ebSJunchao Zhang     mid = rowMid[r];
6310394ed5ebSJunchao Zhang     s   = rowEnd[r];
63118e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
63128e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6313394ed5ebSJunchao Zhang     Atot += mid - k;
6314394ed5ebSJunchao Zhang     Btot += s - mid;
6315394ed5ebSJunchao Zhang 
6316394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6317394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6318394ed5ebSJunchao Zhang       col = j[p];
6319394ed5ebSJunchao Zhang       q   = p;
6320d71ae5a4SJacob Faibussowitsch       do {
6321d71ae5a4SJacob Faibussowitsch         p++;
6322d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6323394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6324394ed5ebSJunchao Zhang       Annz++;
6325394ed5ebSJunchao Zhang     }
6326394ed5ebSJunchao Zhang 
6327394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6328394ed5ebSJunchao Zhang       col = j[p];
6329394ed5ebSJunchao Zhang       q   = p;
6330d71ae5a4SJacob Faibussowitsch       do {
6331d71ae5a4SJacob Faibussowitsch         p++;
6332d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6333394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6334394ed5ebSJunchao Zhang       Bnnz++;
6335394ed5ebSJunchao Zhang     }
6336394ed5ebSJunchao Zhang   }
6337394ed5ebSJunchao Zhang   /* Output */
6338394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6339394ed5ebSJunchao Zhang   *Annz_  = Annz;
6340394ed5ebSJunchao Zhang   *Atot_  = Atot;
6341394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6342394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6343394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6344394ed5ebSJunchao Zhang   *Btot_  = Btot;
6345394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
63463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6347394ed5ebSJunchao Zhang }
6348394ed5ebSJunchao Zhang 
634927430b45SBarry Smith /*
635027430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6351158ec288SJunchao Zhang 
6352158ec288SJunchao Zhang   Input Parameters:
6353158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6354158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6355158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6356651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6357158ec288SJunchao Zhang 
6358158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6359158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6360158ec288SJunchao Zhang 
6361158ec288SJunchao Zhang   Example:
6362158ec288SJunchao Zhang     nnz1 = 4
6363158ec288SJunchao Zhang     nnz  = 6
6364158ec288SJunchao Zhang     imap = [1,3,4,5]
6365158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6366158ec288SJunchao Zhang    then,
6367158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6368158ec288SJunchao Zhang */
6369d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6370d71ae5a4SJacob Faibussowitsch {
6371158ec288SJunchao Zhang   PetscCount k, p;
6372158ec288SJunchao Zhang 
6373158ec288SJunchao Zhang   PetscFunctionBegin;
6374158ec288SJunchao Zhang   jmap_new[0] = 0;
6375158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6376158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6377158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6378158ec288SJunchao Zhang   }
6379158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6381158ec288SJunchao Zhang }
6382158ec288SJunchao Zhang 
63832c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data)
63842c4ab24aSJunchao Zhang {
63852c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data;
63862c4ab24aSJunchao Zhang 
63872c4ab24aSJunchao Zhang   PetscFunctionBegin;
63882c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63892c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63902c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63912c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63922c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63932c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
63942c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
63952c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
63962c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
63972c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
63982c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
63992c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
64002c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
64012c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
64022c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
64032c4ab24aSJunchao Zhang }
64042c4ab24aSJunchao Zhang 
6405d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6406d71ae5a4SJacob Faibussowitsch {
6407394ed5ebSJunchao Zhang   MPI_Comm             comm;
6408394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6409394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6410394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6411394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
64122c4ab24aSJunchao Zhang   PetscContainer       container;
64132c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6414394ed5ebSJunchao Zhang 
6415394ed5ebSJunchao Zhang   PetscFunctionBegin;
64169566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
64179566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6418cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6419eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6420cbc6b225SStefano Zampini #else
64219566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6422cbc6b225SStefano Zampini #endif
64239566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6424cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6425cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6426cbc6b225SStefano Zampini 
64279566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
64289566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
64299566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
64309566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
64319566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
64329566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
64339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
64349566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
64359566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6436394ed5ebSJunchao Zhang 
64376aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6438394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6439394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6440e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6441e8729f6fSJunchao Zhang 
6442e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6443394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6444394ed5ebSJunchao Zhang 
6445394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6446394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6447394ed5ebSJunchao Zhang      will have positive row indices.
6448394ed5ebSJunchao Zhang   */
6449394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
6450394ed5ebSJunchao Zhang     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT;                /* e.g., -2^31, minimal to move them ahead */
6451394ed5ebSJunchao Zhang     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */
6452f7d195e4SLawrence Mitchell     else {
6453f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
6454f7d195e4SLawrence Mitchell       if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */
6455f7d195e4SLawrence Mitchell     }
6456394ed5ebSJunchao Zhang   }
6457394ed5ebSJunchao Zhang 
6458da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64599566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6460651b1cf9SStefano Zampini 
6461651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6462651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64639371c9d4SSatish Balay     if (i1[k] > PETSC_MIN_INT) break;
6464651b1cf9SStefano Zampini   PetscInt i1start = k;
6465651b1cf9SStefano Zampini 
64669566063dSJacob Faibussowitsch   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */
6467394ed5ebSJunchao Zhang   for (; k < rem; k++) i1[k] += PETSC_MAX_INT;                                    /* Revert row indices of local rows*/
6468394ed5ebSJunchao Zhang 
6469394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6470394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6471394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6472394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6473394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6474394ed5ebSJunchao Zhang   const PetscInt *ranges;
6475394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6476394ed5ebSJunchao Zhang 
64779566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6479394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6480394ed5ebSJunchao Zhang     PetscMPIInt owner;
6481394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6482cbc6b225SStefano Zampini 
6483394ed5ebSJunchao Zhang     /* Locate a row range */
6484394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64859566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6486394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6487394ed5ebSJunchao Zhang 
6488394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
64899566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6490394ed5ebSJunchao Zhang 
6491394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6492394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6493394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6494394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6495394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6496cbc6b225SStefano Zampini 
64979566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
64989566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
64999566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
65009566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6501394ed5ebSJunchao Zhang       sendto   = sendto2;
6502394ed5ebSJunchao Zhang       nentries = nentries2;
6503394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6504394ed5ebSJunchao Zhang     }
6505394ed5ebSJunchao Zhang     sendto[nsend]   = owner;
6506394ed5ebSJunchao Zhang     nentries[nsend] = p - k;
65079566063dSJacob Faibussowitsch     PetscCall(PetscCountCast(p - k, &nentries[nsend]));
6508394ed5ebSJunchao Zhang     nsend++;
6509394ed5ebSJunchao Zhang     k = p;
6510394ed5ebSJunchao Zhang   }
6511394ed5ebSJunchao Zhang 
6512394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6513394ed5ebSJunchao Zhang   PetscSF      sf1;
6514394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6515394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6516394ed5ebSJunchao Zhang   PetscInt    *offsets;
6517394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6518394ed5ebSJunchao Zhang 
65199566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
65209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
65219566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6522394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6523394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6524394ed5ebSJunchao Zhang     iremote[k].index = 0;
6525394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
652654c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6527394ed5ebSJunchao Zhang   }
65289566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
65299566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
65309566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
65319566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6532e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6533394ed5ebSJunchao Zhang 
6534394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6535394ed5ebSJunchao Zhang   PetscSF sf2;
6536394ed5ebSJunchao Zhang   nroots  = nroots2;
6537394ed5ebSJunchao Zhang   nleaves = nleaves2;
65389566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
65399566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
65409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6541394ed5ebSJunchao Zhang   p = 0;
6542394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
654354c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6544394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6545394ed5ebSJunchao Zhang       iremote[p].rank  = sendto[k];
6546394ed5ebSJunchao Zhang       iremote[p].index = offsets[k] + q;
6547394ed5ebSJunchao Zhang     }
6548394ed5ebSJunchao Zhang   }
65499566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6550394ed5ebSJunchao Zhang 
6551394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6552394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6553394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6555834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6556834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6557834dcf29SHansol Suh   PetscInt *i1prem = i1 ? i1 + rem : NULL; /* silence ubsan warnings about pointer arithmetic on null pointer */
6558834dcf29SHansol Suh   PetscInt *j1prem = j1 ? j1 + rem : NULL;
6559834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6560834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6561834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6562834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6563394ed5ebSJunchao Zhang 
65649566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65659566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6566394ed5ebSJunchao Zhang 
6567394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6568394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65699566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6570394ed5ebSJunchao Zhang 
6571651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6572651b1cf9SStefano Zampini   PetscCount *Cperm1;
6573834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6574834dcf29SHansol Suh   PetscCount *perm1prem = perm1 ? perm1 + rem : NULL;
6575651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6576834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6577651b1cf9SStefano Zampini 
6578651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6579651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6580651b1cf9SStefano Zampini   PetscBool   hypre;
6581651b1cf9SStefano Zampini   const char *name;
6582651b1cf9SStefano Zampini   PetscCall(PetscObjectGetName((PetscObject)mat, &name));
6583651b1cf9SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre));
6584651b1cf9SStefano Zampini   if (hypre) {
6585651b1cf9SStefano Zampini     PetscInt *minj;
6586651b1cf9SStefano Zampini     PetscBT   hasdiag;
6587651b1cf9SStefano Zampini 
6588651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6589651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
6590651b1cf9SStefano Zampini     for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT;
6591651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6592651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6593651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6594651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6595651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6596651b1cf9SStefano Zampini     }
6597651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6598651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6599651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6600651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6601651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6602651b1cf9SStefano Zampini     }
6603651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6604651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6605651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6606651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6607651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6608651b1cf9SStefano Zampini     }
6609651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6610651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6611651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6612651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6613651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6614651b1cf9SStefano Zampini     }
6615651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6616651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6617651b1cf9SStefano Zampini   }
6618651b1cf9SStefano Zampini 
6619651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6620651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6621651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6622651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6623394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6624394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6625394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6626394ed5ebSJunchao Zhang 
6627651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
66289566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6629651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
66309566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6631394ed5ebSJunchao Zhang 
6632394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6633394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6634394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6635394ed5ebSJunchao Zhang 
66369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
66379566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
66389566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
66399566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6640394ed5ebSJunchao Zhang 
6641394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6642158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6643158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6644158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6645158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6646394ed5ebSJunchao Zhang 
66479566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66489566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6649158ec288SJunchao Zhang 
6650158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6651158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6652158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6653158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6654158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6655158ec288SJunchao Zhang 
6656158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6657158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6658158ec288SJunchao Zhang 
6659158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6660158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6661158ec288SJunchao Zhang 
6662158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6663158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6664158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6665158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66669566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66679566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6668e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66699566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6670394ed5ebSJunchao Zhang 
6671158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6672158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6673158ec288SJunchao Zhang 
6674394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6675394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6676394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66779566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66789566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66799566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6680394ed5ebSJunchao Zhang     Aj = Aj_new;
6681394ed5ebSJunchao Zhang   }
6682394ed5ebSJunchao Zhang 
6683394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6684394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66859566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66869566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66879566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6688394ed5ebSJunchao Zhang     Bj = Bj_new;
6689394ed5ebSJunchao Zhang   }
6690394ed5ebSJunchao Zhang 
6691cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6692394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6693cbc6b225SStefano Zampini   MatType          rtype;
6694394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6695cf8ba265SJunchao Zhang   PetscObjectState state;
66969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
66979566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6698394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
66999371c9d4SSatish Balay   if (cstart) {
67009371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
67019371c9d4SSatish Balay   }
6702c508b908SBarry Smith 
67039566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6704c508b908SBarry Smith 
6705c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6706c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
67079566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
67080da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6709c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6710c508b908SBarry Smith 
6711c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6712c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
67139566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
67140da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6715c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6716c508b908SBarry Smith 
67179566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
67185bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6719cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6720cf8ba265SJunchao Zhang   PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6721cbc6b225SStefano Zampini 
6722394ed5ebSJunchao Zhang   a               = (Mat_SeqAIJ *)mpiaij->A->data;
6723394ed5ebSJunchao Zhang   b               = (Mat_SeqAIJ *)mpiaij->B->data;
6724394ed5ebSJunchao Zhang   a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */
6725394ed5ebSJunchao Zhang   a->free_a = b->free_a = PETSC_TRUE;
6726394ed5ebSJunchao Zhang   a->free_ij = b->free_ij = PETSC_TRUE;
6727394ed5ebSJunchao Zhang 
6728cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
67299566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
67309566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
67319566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
67329566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6733cbc6b225SStefano Zampini 
67342c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
67352c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
67362c4ab24aSJunchao Zhang   coo->n       = coo_n;
67372c4ab24aSJunchao Zhang   coo->sf      = sf2;
67382c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
67392c4ab24aSJunchao Zhang   coo->recvlen = nroots;
67402c4ab24aSJunchao Zhang   coo->Annz    = Annz;
67412c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
67422c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
67432c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
67442c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67452c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67462c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67472c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67482c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67492c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67502c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67512c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67522c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67532c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67542c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67552c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67562c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67572c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67582c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67592c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67602c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67612c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67622c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
67632c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ));
67642c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67652c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6767394ed5ebSJunchao Zhang }
6768394ed5ebSJunchao Zhang 
6769d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6770d71ae5a4SJacob Faibussowitsch {
6771394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6772394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6773394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67742c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67752c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67762c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67772c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67782c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67792c4ab24aSJunchao Zhang   PetscContainer       container;
67802c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6781394ed5ebSJunchao Zhang 
6782394ed5ebSJunchao Zhang   PetscFunctionBegin;
67832c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67842c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67852c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67862c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67872c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67882c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67892c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67902c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67912c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67922c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67932c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
67942c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
67952c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
67962c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
67972c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
67982c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
67992c4ab24aSJunchao Zhang 
68009566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
68019566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6802394ed5ebSJunchao Zhang 
6803394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
68042c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6805394ed5ebSJunchao Zhang 
6806394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
68072c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6808394ed5ebSJunchao Zhang   /* Add local entries to A and B */
68092c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6810da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6811158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6812158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6813394ed5ebSJunchao Zhang   }
68142c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6815158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6816158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6817158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6818394ed5ebSJunchao Zhang   }
68192c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6820394ed5ebSJunchao Zhang 
6821394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
68222c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6823394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6824394ed5ebSJunchao Zhang   }
68252c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6826394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6827394ed5ebSJunchao Zhang   }
68289566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
68299566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
68303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6831394ed5ebSJunchao Zhang }
6832394ed5ebSJunchao Zhang 
6833ccd8e176SBarry Smith /*MC
6834ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6835ccd8e176SBarry Smith 
6836ccd8e176SBarry Smith    Options Database Keys:
683711a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6838ccd8e176SBarry Smith 
6839ccd8e176SBarry Smith    Level: beginner
68400cd7f59aSBarry Smith 
68410cd7f59aSBarry Smith    Notes:
68422ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
68430cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
68440cd7f59aSBarry Smith     in the matrix
68450cd7f59aSBarry Smith 
684611a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
684711a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6848ccd8e176SBarry Smith 
68491cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6850ccd8e176SBarry Smith M*/
6851d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6852d71ae5a4SJacob Faibussowitsch {
6853ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6854ccd8e176SBarry Smith   PetscMPIInt size;
6855ccd8e176SBarry Smith 
6856ccd8e176SBarry Smith   PetscFunctionBegin;
68579566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68582205254eSKarl Rupp 
68594dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6860ccd8e176SBarry Smith   B->data       = (void *)b;
6861aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6862ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6863ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6864ccd8e176SBarry Smith   b->size       = size;
68652205254eSKarl Rupp 
68669566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6867ccd8e176SBarry Smith 
6868ccd8e176SBarry Smith   /* build cache for off array entries formed */
68699566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68702205254eSKarl Rupp 
6871ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6872f4259b30SLisandro Dalcin   b->colmap      = NULL;
6873f4259b30SLisandro Dalcin   b->garray      = NULL;
6874ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6875ccd8e176SBarry Smith 
6876ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68770298fd71SBarry Smith   b->lvec  = NULL;
68780298fd71SBarry Smith   b->Mvctx = NULL;
6879ccd8e176SBarry Smith 
6880ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6881f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6882f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6883ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6884ccd8e176SBarry Smith 
6885f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68860298fd71SBarry Smith   b->spptr = NULL;
6887f60c3dc2SHong Zhang 
68889566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68899566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68909566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68929566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68939566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
68949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
68959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
68969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
68979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
68983d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
68999566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
69003d0639e7SStefano Zampini #endif
6901d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6902d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6903d5e393b6SSuyash Tandon #endif
69043d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
69059566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
69063d0639e7SStefano Zampini #endif
69079779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
69089566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6909191b95cbSRichard Tran Mills #endif
69109566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
69119566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
69129566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
69139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
69145d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
69159566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
69165d7652ecSHong Zhang #endif
6917d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
69189566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6919d24d4204SJose E. Roman #endif
69209566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
69219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
69223dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
69239566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
69249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
69253dad0653Sstefano_zampini #endif
69269566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
69279566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
69289566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
69299566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
69309566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
69313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6932ccd8e176SBarry Smith }
693381824310SBarry Smith 
6934cce60c4dSBarry Smith /*@C
693511a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
693603bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
693703bfb495SBarry Smith 
6938d083f849SBarry Smith   Collective
693903bfb495SBarry Smith 
694003bfb495SBarry Smith   Input Parameters:
694103bfb495SBarry Smith + comm - MPI communicator
694211a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
694303bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6944d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
69452ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
69462ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69472ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6948483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
694904ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
695003bfb495SBarry Smith . a    - matrix values
6951483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69522ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
695303bfb495SBarry Smith - oa   - matrix values
695403bfb495SBarry Smith 
695503bfb495SBarry Smith   Output Parameter:
695603bfb495SBarry Smith . mat - the matrix
695703bfb495SBarry Smith 
695803bfb495SBarry Smith   Level: advanced
695903bfb495SBarry Smith 
696003bfb495SBarry Smith   Notes:
69612ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc. The user
6962292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
696303bfb495SBarry Smith 
69642ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
696503bfb495SBarry Smith 
69662ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
696703bfb495SBarry Smith 
69687b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69697b55108eSBarry Smith 
6970dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6971dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6972dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6973dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
697411a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6975dca341c0SJed Brown   communication if it is known that only local entries will be set.
697603bfb495SBarry Smith 
69771cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6978db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69792b26979fSBarry Smith @*/
6980d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6981d71ae5a4SJacob Faibussowitsch {
698203bfb495SBarry Smith   Mat_MPIAIJ *maij;
698303bfb495SBarry Smith 
698403bfb495SBarry Smith   PetscFunctionBegin;
698508401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6986aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6987aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69889566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69899566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69909566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
699103bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69922205254eSKarl Rupp 
69938d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
699403bfb495SBarry Smith 
69959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
69969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
699703bfb495SBarry Smith 
69989566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
69999566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
700003bfb495SBarry Smith 
70019566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
70029566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
70039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
70049566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
70059566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
70063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
700703bfb495SBarry Smith }
700803bfb495SBarry Smith 
70094e84afc0SStefano Zampini typedef struct {
70104e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
70114e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
70124e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
70134e84afc0SStefano Zampini 
70144e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
70154e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
70164e84afc0SStefano Zampini   PetscScalar *bufa;
70174e84afc0SStefano Zampini   Mat          P_oth;
70184e84afc0SStefano Zampini 
70194e84afc0SStefano Zampini   /* may take advantage of merging product->B */
7020ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
70214e84afc0SStefano Zampini 
7022ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
70234e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
70244e84afc0SStefano Zampini      of the temporary storage */
70254e84afc0SStefano Zampini   PetscBool reusesym;
70264e84afc0SStefano Zampini 
70274e84afc0SStefano Zampini   /* support for COO values insertion */
7028ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
7029ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
7030ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
7031ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
7032c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
7033c215019aSStefano Zampini   PetscMemType mtype;
70344e84afc0SStefano Zampini 
70354e84afc0SStefano Zampini   /* customization */
70364e84afc0SStefano Zampini   PetscBool abmerge;
7037abb89eb1SStefano Zampini   PetscBool P_oth_bind;
70384e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
70394e84afc0SStefano Zampini 
7040ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
7041d71ae5a4SJacob Faibussowitsch {
70424e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
70434e84afc0SStefano Zampini   PetscInt             i;
70444e84afc0SStefano Zampini 
70454e84afc0SStefano Zampini   PetscFunctionBegin;
70469566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70479566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70489566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70499566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70509566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70519566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70529566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
705348a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70549566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70559566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70569566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70579566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70589566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70599566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70614e84afc0SStefano Zampini }
70624e84afc0SStefano Zampini 
7063fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7064fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7065fff043a9SJunchao Zhang  */
7066d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7067d71ae5a4SJacob Faibussowitsch {
7068c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7069c215019aSStefano Zampini 
7070c215019aSStefano Zampini   PetscFunctionBegin;
70719566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7072c215019aSStefano Zampini   if (f) {
70739566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7074c215019aSStefano Zampini   } else {
7075c215019aSStefano Zampini     const PetscScalar *vv;
7076c215019aSStefano Zampini 
70779566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7078c215019aSStefano Zampini     if (n && idx) {
7079c215019aSStefano Zampini       PetscScalar    *w  = v;
7080c215019aSStefano Zampini       const PetscInt *oi = idx;
7081c215019aSStefano Zampini       PetscInt        j;
7082c215019aSStefano Zampini 
7083c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7084c215019aSStefano Zampini     } else {
70859566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7086c215019aSStefano Zampini     }
70879566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7088c215019aSStefano Zampini   }
70893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7090c215019aSStefano Zampini }
7091c215019aSStefano Zampini 
7092d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7093d71ae5a4SJacob Faibussowitsch {
70944e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
70954e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
70964e84afc0SStefano Zampini 
70974e84afc0SStefano Zampini   PetscFunctionBegin;
70984e84afc0SStefano Zampini   MatCheckProduct(C, 1);
709928b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
71004e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
71014e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
710248a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
710348a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
71044e84afc0SStefano Zampini   }
71054e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7106abb89eb1SStefano Zampini 
7107abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
710808401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
71099566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7110abb89eb1SStefano Zampini   }
71114e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
71124e84afc0SStefano Zampini     PetscInt noff = mmdata->off[i + 1] - mmdata->off[i];
71134e84afc0SStefano Zampini 
71144e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
71154e84afc0SStefano Zampini     if (noff) {
7116c215019aSStefano Zampini       PetscInt nown = mmdata->own[i + 1] - mmdata->own[i];
7117c215019aSStefano Zampini 
71189566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
71199566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
71204e84afc0SStefano Zampini       n_o += noff;
71214e84afc0SStefano Zampini       n_d += nown;
71224e84afc0SStefano Zampini     } else {
7123c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7124c215019aSStefano Zampini 
71259566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
71264e84afc0SStefano Zampini       n_d += mm->nz;
71274e84afc0SStefano Zampini     }
71284e84afc0SStefano Zampini   }
7129c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
71309566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71319566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71324e84afc0SStefano Zampini   }
71339566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
71343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71354e84afc0SStefano Zampini }
71364e84afc0SStefano Zampini 
71374e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
71384e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7139d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7140d71ae5a4SJacob Faibussowitsch {
71414e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7142ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
71434e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
71444e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71454e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71464e84afc0SStefano Zampini   IS                     glob      = NULL;
71474e84afc0SStefano Zampini   const char            *prefix;
71484e84afc0SStefano Zampini   char                   pprefix[256];
71494e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
715082a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
715182a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7152ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7153ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7154ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7155ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7156ddea5d60SJunchao Zhang 
71574e84afc0SStefano Zampini   MatProductType ptype;
7158d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71594e84afc0SStefano Zampini   PetscMPIInt    size;
71604e84afc0SStefano Zampini 
71614e84afc0SStefano Zampini   PetscFunctionBegin;
71624e84afc0SStefano Zampini   MatCheckProduct(C, 1);
716328b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71644e84afc0SStefano Zampini   ptype = product->type;
7165b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7166fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7167fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7168fa046f9fSJunchao Zhang   }
71694e84afc0SStefano Zampini   switch (ptype) {
71704e84afc0SStefano Zampini   case MATPRODUCT_AB:
71714e84afc0SStefano Zampini     A          = product->A;
71724e84afc0SStefano Zampini     P          = product->B;
71734e84afc0SStefano Zampini     m          = A->rmap->n;
71744e84afc0SStefano Zampini     n          = P->cmap->n;
71754e84afc0SStefano Zampini     M          = A->rmap->N;
71764e84afc0SStefano Zampini     N          = P->cmap->N;
7177ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71784e84afc0SStefano Zampini     break;
71794e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71804e84afc0SStefano Zampini     P          = product->A;
71814e84afc0SStefano Zampini     A          = product->B;
71824e84afc0SStefano Zampini     m          = P->cmap->n;
71834e84afc0SStefano Zampini     n          = A->cmap->n;
71844e84afc0SStefano Zampini     M          = P->cmap->N;
71854e84afc0SStefano Zampini     N          = A->cmap->N;
71864e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71874e84afc0SStefano Zampini     break;
71884e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71894e84afc0SStefano Zampini     A          = product->A;
71904e84afc0SStefano Zampini     P          = product->B;
71914e84afc0SStefano Zampini     m          = P->cmap->n;
71924e84afc0SStefano Zampini     n          = P->cmap->n;
71934e84afc0SStefano Zampini     M          = P->cmap->N;
71944e84afc0SStefano Zampini     N          = P->cmap->N;
71954e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71964e84afc0SStefano Zampini     break;
7197d71ae5a4SJacob Faibussowitsch   default:
7198d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
71994e84afc0SStefano Zampini   }
72009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
72014e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
72024e84afc0SStefano Zampini 
72034e84afc0SStefano Zampini   /* defaults */
72044e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
72054e84afc0SStefano Zampini     mp[i]    = NULL;
72064e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
72074e84afc0SStefano Zampini     rmapt[i] = -1;
72084e84afc0SStefano Zampini     cmapt[i] = -1;
72094e84afc0SStefano Zampini     rmapa[i] = NULL;
72104e84afc0SStefano Zampini     cmapa[i] = NULL;
72114e84afc0SStefano Zampini   }
72124e84afc0SStefano Zampini 
72134e84afc0SStefano Zampini   /* customization */
72149566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
72154e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
72164e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
72174e84afc0SStefano Zampini     if (product->api_user) {
7218d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
72199566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72209566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7221d0609cedSBarry Smith       PetscOptionsEnd();
72224e84afc0SStefano Zampini     } else {
7223d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
72249566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72259566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7226d0609cedSBarry Smith       PetscOptionsEnd();
7227abb89eb1SStefano Zampini     }
7228abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7229abb89eb1SStefano Zampini     if (product->api_user) {
7230d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
72319566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7232d0609cedSBarry Smith       PetscOptionsEnd();
7233abb89eb1SStefano Zampini     } else {
7234d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
72359566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7236d0609cedSBarry Smith       PetscOptionsEnd();
72374e84afc0SStefano Zampini     }
72384e84afc0SStefano Zampini   }
72394e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
72404e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
72419566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
72429566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
72439566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
72449566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72459566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7246ddea5d60SJunchao Zhang 
7247ddea5d60SJunchao Zhang   cp = 0;
72484e84afc0SStefano Zampini   switch (ptype) {
72494e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72509566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72514e84afc0SStefano Zampini 
7252ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7253ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72544e84afc0SStefano Zampini       /* P is product->B */
72559566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72569566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72579566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72589566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72599566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72609566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72619566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72624e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72639566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72649566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72659566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72664e84afc0SStefano Zampini       rmapt[cp] = 1;
72674e84afc0SStefano Zampini       cmapt[cp] = 2;
72684e84afc0SStefano Zampini       cmapa[cp] = globidx;
72694e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72704e84afc0SStefano Zampini       cp++;
7271ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72729566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72739566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72749566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72759566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72769566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72779566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72784e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72799566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72809566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72814e84afc0SStefano Zampini       rmapt[cp] = 1;
72824e84afc0SStefano Zampini       cmapt[cp] = 1;
72834e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72844e84afc0SStefano Zampini       cp++;
72859566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72869566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72879566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72889566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72899566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72909566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72914e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72929566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72939566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72944e84afc0SStefano Zampini       rmapt[cp] = 1;
72954e84afc0SStefano Zampini       cmapt[cp] = 2;
72964e84afc0SStefano Zampini       cmapa[cp] = p->garray;
72974e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72984e84afc0SStefano Zampini       cp++;
72994e84afc0SStefano Zampini     }
7300ddea5d60SJunchao Zhang 
7301ddea5d60SJunchao Zhang     /* A_off * P_other */
73024e84afc0SStefano Zampini     if (mmdata->P_oth) {
73039566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
73049566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7305f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73069566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73079566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73089566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73099566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73109566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73119566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73129566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73134e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73149566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73159566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73164e84afc0SStefano Zampini       rmapt[cp] = 1;
73174e84afc0SStefano Zampini       cmapt[cp] = 2;
73184e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73194e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73204e84afc0SStefano Zampini       cp++;
73214e84afc0SStefano Zampini     }
73224e84afc0SStefano Zampini     break;
7323ddea5d60SJunchao Zhang 
73244e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
73254e84afc0SStefano Zampini     /* A is product->B */
73269566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7327ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
73289566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
73299566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73309566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73319566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73329566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73339566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73344e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73359566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73369566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73379566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73384e84afc0SStefano Zampini       rmapt[cp] = 2;
73394e84afc0SStefano Zampini       rmapa[cp] = globidx;
73404e84afc0SStefano Zampini       cmapt[cp] = 2;
73414e84afc0SStefano Zampini       cmapa[cp] = globidx;
73424e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73434e84afc0SStefano Zampini       cp++;
73444e84afc0SStefano Zampini     } else {
73459566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73469566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73479566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73489566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73499566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73509566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73514e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73529566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73539566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73549566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73554e84afc0SStefano Zampini       rmapt[cp] = 1;
73564e84afc0SStefano Zampini       cmapt[cp] = 2;
73574e84afc0SStefano Zampini       cmapa[cp] = globidx;
73584e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73594e84afc0SStefano Zampini       cp++;
73609566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73619566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73629566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73639566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73649566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73659566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73664e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73679566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73689566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73694e84afc0SStefano Zampini       rmapt[cp] = 2;
73704e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73714e84afc0SStefano Zampini       cmapt[cp] = 2;
73724e84afc0SStefano Zampini       cmapa[cp] = globidx;
73734e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73744e84afc0SStefano Zampini       cp++;
73754e84afc0SStefano Zampini     }
73764e84afc0SStefano Zampini     break;
73774e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73789566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73794e84afc0SStefano Zampini     /* P is product->B */
73809566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73819566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73829566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73839566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73849566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73859566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73869566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73874e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73889566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73899566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73909566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73914e84afc0SStefano Zampini     rmapt[cp] = 2;
73924e84afc0SStefano Zampini     rmapa[cp] = globidx;
73934e84afc0SStefano Zampini     cmapt[cp] = 2;
73944e84afc0SStefano Zampini     cmapa[cp] = globidx;
73954e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
73964e84afc0SStefano Zampini     cp++;
73974e84afc0SStefano Zampini     if (mmdata->P_oth) {
73989566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
73999566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7400f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
74019566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
74029566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
74039566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
74049566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74059566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74069566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74079566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74084e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74099566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74109566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74114e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
74124e84afc0SStefano Zampini       cp++;
74139566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
74149566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
74159566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74169566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74179566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74189566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74194e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74209566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74219566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74224e84afc0SStefano Zampini       rmapt[cp] = 2;
74234e84afc0SStefano Zampini       rmapa[cp] = globidx;
74244e84afc0SStefano Zampini       cmapt[cp] = 2;
74254e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
74264e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74274e84afc0SStefano Zampini       cp++;
74284e84afc0SStefano Zampini     }
74294e84afc0SStefano Zampini     break;
7430d71ae5a4SJacob Faibussowitsch   default:
7431d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
74324e84afc0SStefano Zampini   }
74334e84afc0SStefano Zampini   /* sanity check */
74349371c9d4SSatish Balay   if (size > 1)
74359371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
74364e84afc0SStefano Zampini 
74379566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7438ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7439ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7440ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7441ddea5d60SJunchao Zhang   }
74424e84afc0SStefano Zampini   mmdata->cp             = cp;
74434e84afc0SStefano Zampini   C->product->data       = mmdata;
74444e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74454e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74464e84afc0SStefano Zampini 
7447c215019aSStefano Zampini   /* memory type */
7448c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74499566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7450d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74519566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7452c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7453d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74543214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7455c215019aSStefano Zampini 
74564e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7457ddea5d60SJunchao Zhang 
7458ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7459ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7460ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7461ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7462ddea5d60SJunchao Zhang   */
74634e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74644e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74654e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7466ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74674e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74684e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74694e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74704e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74714e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74724e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74734e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74744e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7475ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7476ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74774e84afc0SStefano Zampini       }
74784e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74794e84afc0SStefano Zampini   }
7480ddea5d60SJunchao Zhang 
7481ddea5d60SJunchao Zhang   /*
7482ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7483ddea5d60SJunchao Zhang 
7484ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7485ddea5d60SJunchao Zhang 
7486d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7487ddea5d60SJunchao Zhang 
7488ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7489ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7490ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7491ddea5d60SJunchao Zhang 
7492ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7493da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7494ddea5d60SJunchao Zhang   */
74959566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
74969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7497ddea5d60SJunchao Zhang 
7498ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7499ddea5d60SJunchao Zhang   if (hasoffproc) {
75004e84afc0SStefano Zampini     PetscSF  msf;
75014e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
75024e84afc0SStefano Zampini 
75039566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
75049566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
75059566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7506ddea5d60SJunchao Zhang 
75074e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
75084e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
75094e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
75104e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7511ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
75124e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
75134e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
75144e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
75154e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
75164e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
75174e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
75184e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
75194e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
75204e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
75214e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
75224e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
75234e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
75244e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7525ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
75264e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
75274e84afc0SStefano Zampini               *coi++    = gr;
75284e84afc0SStefano Zampini               *idxoff++ = j;
75294e84afc0SStefano Zampini             }
75304e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
75314e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
75324e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75334e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
75344e84afc0SStefano Zampini             } else { /* offdiag */
75354e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75364e84afc0SStefano Zampini             }
75374e84afc0SStefano Zampini             ncoo_o += nz;
7538ddea5d60SJunchao Zhang           } else { /* this is a local row */
75394e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
75404e84afc0SStefano Zampini           }
75414e84afc0SStefano Zampini         }
75424e84afc0SStefano Zampini       }
75434e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
75444e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75454e84afc0SStefano Zampini     }
75464e84afc0SStefano Zampini 
75479566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75489566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75499566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75509566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75514e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75529566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75539566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75549566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75559566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75569566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75579566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7558ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75599566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75604e84afc0SStefano Zampini     coo_i = coo_i2;
75614e84afc0SStefano Zampini     coo_j = coo_j2;
75624e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75634e84afc0SStefano Zampini     ncoo = ncoo_d;
75649566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7565c215019aSStefano Zampini 
75669566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75679566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75689566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75694e84afc0SStefano Zampini   }
7570c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75714e84afc0SStefano Zampini 
7572ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75734e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75744e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75754e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75764e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75774e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75784e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75794e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75804e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75814e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75824e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75834e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75844e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75854e84afc0SStefano Zampini 
75864e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7587ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7588ddea5d60SJunchao Zhang       /* fill coo_i */
75894e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75904e84afc0SStefano Zampini         const PetscInt gr = i + rs;
75914e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
75924e84afc0SStefano Zampini       }
7593ddea5d60SJunchao Zhang       /* fill coo_j */
7594ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
75959566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7596ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7597ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7598ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
75994e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
76004e84afc0SStefano Zampini       }
76014e84afc0SStefano Zampini       ncoo_d += mm->nz;
7602ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
76034e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
76044e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
76054e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
76064e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7607ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
76084e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7609ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
76104e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
76114e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
76124e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7613ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
76144e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
76154e84afc0SStefano Zampini           }
76164e84afc0SStefano Zampini           ncoo_d += nz;
76174e84afc0SStefano Zampini         }
76184e84afc0SStefano Zampini       }
76194e84afc0SStefano Zampini     }
76204e84afc0SStefano Zampini   }
762148a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
76229566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
762348a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
76249566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7625ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
76269566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
76274e84afc0SStefano Zampini 
76284e84afc0SStefano Zampini   /* preallocate with COO data */
76299566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76309566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76324e84afc0SStefano Zampini }
76334e84afc0SStefano Zampini 
7634d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7635d71ae5a4SJacob Faibussowitsch {
76364e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76374e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76384e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7639abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76404e84afc0SStefano Zampini #else
76414e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76424e84afc0SStefano Zampini #endif
76434e84afc0SStefano Zampini 
76444e84afc0SStefano Zampini   PetscFunctionBegin;
76454e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76464e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
764748a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
764865e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7649abb89eb1SStefano Zampini     switch (product->type) {
7650abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7651abb89eb1SStefano Zampini       if (product->api_user) {
7652d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76539566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7654d0609cedSBarry Smith         PetscOptionsEnd();
7655abb89eb1SStefano Zampini       } else {
7656d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76579566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7658d0609cedSBarry Smith         PetscOptionsEnd();
7659abb89eb1SStefano Zampini       }
7660abb89eb1SStefano Zampini       break;
7661abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7662abb89eb1SStefano Zampini       if (product->api_user) {
7663d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76649566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7665d0609cedSBarry Smith         PetscOptionsEnd();
7666abb89eb1SStefano Zampini       } else {
7667d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76689566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7669d0609cedSBarry Smith         PetscOptionsEnd();
7670abb89eb1SStefano Zampini       }
7671abb89eb1SStefano Zampini       break;
7672abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7673abb89eb1SStefano Zampini       if (product->api_user) {
7674d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76759566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7676d0609cedSBarry Smith         PetscOptionsEnd();
7677abb89eb1SStefano Zampini       } else {
7678d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76799566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7680d0609cedSBarry Smith         PetscOptionsEnd();
7681abb89eb1SStefano Zampini       }
7682abb89eb1SStefano Zampini       break;
7683d71ae5a4SJacob Faibussowitsch     default:
7684d71ae5a4SJacob Faibussowitsch       break;
7685abb89eb1SStefano Zampini     }
7686abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7687abb89eb1SStefano Zampini   }
76884e84afc0SStefano Zampini #endif
76894e84afc0SStefano Zampini   if (match) {
76904e84afc0SStefano Zampini     switch (product->type) {
76914e84afc0SStefano Zampini     case MATPRODUCT_AB:
76924e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7693d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7694d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7695d71ae5a4SJacob Faibussowitsch       break;
7696d71ae5a4SJacob Faibussowitsch     default:
7697d71ae5a4SJacob Faibussowitsch       break;
76984e84afc0SStefano Zampini     }
76994e84afc0SStefano Zampini   }
77004e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
77019566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
77023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
770381824310SBarry Smith }
770498921bdaSJacob Faibussowitsch 
770598921bdaSJacob Faibussowitsch /*
770672833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
770772833a62Smarkadams4 
770872833a62Smarkadams4    n - the number of block indices in cc[]
770972833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
771072833a62Smarkadams4 */
7711d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7712d71ae5a4SJacob Faibussowitsch {
771372833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
771472833a62Smarkadams4   const PetscInt *idx;
771572833a62Smarkadams4 
771672833a62Smarkadams4   PetscFunctionBegin;
771772833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
771872833a62Smarkadams4   if (nidx) {
771972833a62Smarkadams4     cnt     = 0;
772072833a62Smarkadams4     cc[cnt] = idx[0] / bs;
772172833a62Smarkadams4     for (j = 1; j < nidx; j++) {
772272833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
772372833a62Smarkadams4     }
772472833a62Smarkadams4   }
772572833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
772672833a62Smarkadams4   *n = cnt + 1;
77273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
772872833a62Smarkadams4 }
772972833a62Smarkadams4 
773072833a62Smarkadams4 /*
773172833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
773272833a62Smarkadams4 
773372833a62Smarkadams4     ncollapsed - the number of block indices
773472833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
773572833a62Smarkadams4 */
7736d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7737d71ae5a4SJacob Faibussowitsch {
773872833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
773972833a62Smarkadams4 
774072833a62Smarkadams4   PetscFunctionBegin;
774172833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
774272833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
774372833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
774472833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77459371c9d4SSatish Balay     cprevtmp = cprev;
77469371c9d4SSatish Balay     cprev    = merged;
77479371c9d4SSatish Balay     merged   = cprevtmp;
774872833a62Smarkadams4   }
774972833a62Smarkadams4   *ncollapsed = nprev;
775072833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
775272833a62Smarkadams4 }
775372833a62Smarkadams4 
77542d776b49SBarry Smith /*
775572833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
775672833a62Smarkadams4 
775772833a62Smarkadams4  Input Parameter:
775872833a62Smarkadams4  . Amat - matrix
775972833a62Smarkadams4  - symmetrize - make the result symmetric
776072833a62Smarkadams4  + scale - scale with diagonal
776172833a62Smarkadams4 
776272833a62Smarkadams4  Output Parameter:
776372833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
776472833a62Smarkadams4 
776572833a62Smarkadams4 */
7766e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7767d71ae5a4SJacob Faibussowitsch {
776872833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
776972833a62Smarkadams4   MPI_Comm  comm;
777072833a62Smarkadams4   Mat       Gmat;
777172833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
777272833a62Smarkadams4   Mat       a, b, c;
777372833a62Smarkadams4   MatType   jtype;
777472833a62Smarkadams4 
777572833a62Smarkadams4   PetscFunctionBegin;
777672833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
777772833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
777872833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
777972833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
778072833a62Smarkadams4   nloc = (Iend - Istart) / bs;
778172833a62Smarkadams4 
778272833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
778372833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
778472833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
778572833a62Smarkadams4 
778672833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
778772833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
778872833a62Smarkadams4      implementation */
778972833a62Smarkadams4   if (bs > 1) {
779072833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
779172833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
779272833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
779372833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
779472833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
779572833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
779672833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
77972cf69117Smarkadams4       MatScalar *aa, val, *AA;
77982cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
77999371c9d4SSatish Balay       if (isseqaij) {
78009371c9d4SSatish Balay         a = Amat;
78019371c9d4SSatish Balay         b = NULL;
78029371c9d4SSatish Balay       } else {
780372833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
78049371c9d4SSatish Balay         a             = d->A;
78059371c9d4SSatish Balay         b             = d->B;
780672833a62Smarkadams4       }
780772833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
780872833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
780972833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
78102cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
781159ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
781259ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
781359ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
781459ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
781559ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
781672833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
781759ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
781859ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
781959ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
782059ee9f9fSPierre Jolivet             else {
782159ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
782259ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
782359ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
782472833a62Smarkadams4               }
782559ee9f9fSPierre Jolivet             }
782659ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
782759ee9f9fSPierre Jolivet           }
782859ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
782972833a62Smarkadams4           if (!ok) {
783072833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
783159ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
783272833a62Smarkadams4             goto old_bs;
783372833a62Smarkadams4           }
783472833a62Smarkadams4         }
783572833a62Smarkadams4       }
783672833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
783772833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
783872833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78392cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
784072833a62Smarkadams4       // diag
784172833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
784272833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
784372833a62Smarkadams4         ai               = aseq->i;
784472833a62Smarkadams4         n                = ai[brow + 1] - ai[brow];
784572833a62Smarkadams4         aj               = aseq->j + ai[brow];
784672833a62Smarkadams4         for (int k = 0; k < n; k += bs) {        // block columns
784772833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
784872833a62Smarkadams4           val        = 0;
7849e02fb3cdSMark Adams           if (index_size == 0) {
785072833a62Smarkadams4             for (int ii = 0; ii < bs; ii++) { // rows in block
785172833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
785272833a62Smarkadams4               for (int jj = 0; jj < bs; jj++) {         // columns in block
785372833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
785472833a62Smarkadams4               }
785572833a62Smarkadams4             }
7856e02fb3cdSMark Adams           } else {                                       // use (index,index) value if provided
7857e02fb3cdSMark Adams             for (int iii = 0; iii < index_size; iii++) { // rows in block
7858e02fb3cdSMark Adams               int ii = index[iii];
7859e02fb3cdSMark Adams               aa     = aseq->a + ai[brow + ii] + k;
7860e02fb3cdSMark Adams               for (int jjj = 0; jjj < index_size; jjj++) { // columns in block
7861e02fb3cdSMark Adams                 int jj = index[jjj];
7862cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7863e02fb3cdSMark Adams               }
7864e02fb3cdSMark Adams             }
7865e02fb3cdSMark Adams           }
786659ee9f9fSPierre Jolivet           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
786772833a62Smarkadams4           AA[k / bs] = val;
786872833a62Smarkadams4         }
786972833a62Smarkadams4         grow = Istart / bs + brow / bs;
787066521e1fSMark Adams         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES));
787172833a62Smarkadams4       }
787272833a62Smarkadams4       // off-diag
787372833a62Smarkadams4       if (ismpiaij) {
787472833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
787572833a62Smarkadams4         const PetscScalar *vals;
787672833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
787772833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
787872833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
787972833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
788072833a62Smarkadams4           for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
788159ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
788272833a62Smarkadams4             AA[k / bs] = 0;
788372833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
788472833a62Smarkadams4           }
788572833a62Smarkadams4           nc = ncols / bs;
788672833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7887e02fb3cdSMark Adams           if (index_size == 0) {
788872833a62Smarkadams4             for (int ii = 0; ii < bs; ii++) { // rows in block
788972833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
789072833a62Smarkadams4               for (int k = 0; k < ncols; k += bs) {
789172833a62Smarkadams4                 for (int jj = 0; jj < bs; jj++) { // cols in block
789259ee9f9fSPierre Jolivet                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
789372833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
789472833a62Smarkadams4                 }
789572833a62Smarkadams4               }
789672833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
789772833a62Smarkadams4             }
7898e02fb3cdSMark Adams           } else {                                       // use (index,index) value if provided
7899e02fb3cdSMark Adams             for (int iii = 0; iii < index_size; iii++) { // rows in block
7900e02fb3cdSMark Adams               int ii = index[iii];
7901e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
7902e02fb3cdSMark Adams               for (int k = 0; k < ncols; k += bs) {
7903e02fb3cdSMark Adams                 for (int jjj = 0; jjj < index_size; jjj++) { // cols in block
7904e02fb3cdSMark Adams                   int jj = index[jjj];
7905e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7906e02fb3cdSMark Adams                 }
7907e02fb3cdSMark Adams               }
7908e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7909e02fb3cdSMark Adams             }
7910e02fb3cdSMark Adams           }
791172833a62Smarkadams4           grow = Istart / bs + brow / bs;
791266521e1fSMark Adams           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES));
791372833a62Smarkadams4         }
791472833a62Smarkadams4       }
791572833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
791672833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79172cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
791872833a62Smarkadams4     } else {
791972833a62Smarkadams4       const PetscScalar *vals;
792072833a62Smarkadams4       const PetscInt    *idx;
792172833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
792272833a62Smarkadams4     old_bs:
792372833a62Smarkadams4       /*
792472833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
792572833a62Smarkadams4        */
792672833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
792772833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
792872833a62Smarkadams4       if (isseqaij) {
792972833a62Smarkadams4         PetscInt max_d_nnz;
793072833a62Smarkadams4         /*
793172833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
793272833a62Smarkadams4          */
793372833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
793472833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
793572833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
793648a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
793772833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
793872833a62Smarkadams4       } else if (ismpiaij) {
793972833a62Smarkadams4         Mat             Daij, Oaij;
794072833a62Smarkadams4         const PetscInt *garray;
794172833a62Smarkadams4         PetscInt        max_d_nnz;
794272833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
794372833a62Smarkadams4         /*
794472833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
794572833a62Smarkadams4          */
794672833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
794772833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
794872833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
794948a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
795072833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
795172833a62Smarkadams4         /*
795272833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
795372833a62Smarkadams4          */
795472833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
795572833a62Smarkadams4           o_nnz[jj] = 0;
795672833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
795772833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
795872833a62Smarkadams4             o_nnz[jj] += ncols;
795972833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
796072833a62Smarkadams4           }
796172833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
796272833a62Smarkadams4         }
796372833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
796472833a62Smarkadams4       /* get scalar copy (norms) of matrix */
796572833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
796672833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
796772833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
796872833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
796972833a62Smarkadams4         PetscInt dest_row = Ii / bs;
797072833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
797172833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
797272833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
797372833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
797472833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
797572833a62Smarkadams4         }
797672833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
797772833a62Smarkadams4       }
797872833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
797972833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
798072833a62Smarkadams4     }
798172833a62Smarkadams4   } else {
79822d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
79832d776b49SBarry Smith     else {
79842d776b49SBarry Smith       Gmat = Amat;
79852d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
79862d776b49SBarry Smith     }
79879371c9d4SSatish Balay     if (isseqaij) {
79889371c9d4SSatish Balay       a = Gmat;
79899371c9d4SSatish Balay       b = NULL;
79909371c9d4SSatish Balay     } else {
799172833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
79929371c9d4SSatish Balay       a             = d->A;
79939371c9d4SSatish Balay       b             = d->B;
799472833a62Smarkadams4     }
79952d776b49SBarry Smith     if (filter >= 0 || scale) {
79962d776b49SBarry Smith       /* take absolute value of each entry */
799772833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
799872833a62Smarkadams4         MatInfo      info;
799972833a62Smarkadams4         PetscScalar *avals;
800072833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
800172833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
800272833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
800372833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
800472833a62Smarkadams4       }
800572833a62Smarkadams4     }
80062d776b49SBarry Smith   }
800772833a62Smarkadams4   if (symmetrize) {
8008b94d7dedSBarry Smith     PetscBool isset, issym;
8009b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
8010b94d7dedSBarry Smith     if (!isset || !issym) {
801172833a62Smarkadams4       Mat matTrans;
801272833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
80131fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
801472833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
801572833a62Smarkadams4     }
801672833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80172d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
801872833a62Smarkadams4   if (scale) {
801972833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
802072833a62Smarkadams4     Vec diag;
802172833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
802272833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
802372833a62Smarkadams4     PetscCall(VecReciprocal(diag));
802472833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
802572833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
802672833a62Smarkadams4     PetscCall(VecDestroy(&diag));
802772833a62Smarkadams4   }
802872833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80292d776b49SBarry Smith 
80302d776b49SBarry Smith   if (filter >= 0) {
80312ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80322ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80332d776b49SBarry Smith   }
803472833a62Smarkadams4   *a_Gmat = Gmat;
80353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
803672833a62Smarkadams4 }
803772833a62Smarkadams4 
803872833a62Smarkadams4 /*
803998921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
804098921bdaSJacob Faibussowitsch */
804198921bdaSJacob Faibussowitsch 
804298921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80439566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80449566063dSJacob Faibussowitsch #undef PetscCall
80459371c9d4SSatish Balay #define PetscCall(...) \
80469371c9d4SSatish Balay   do { \
80475f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
804898921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
804998921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
805098921bdaSJacob Faibussowitsch       return; \
805198921bdaSJacob Faibussowitsch     } \
805298921bdaSJacob Faibussowitsch   } while (0)
805398921bdaSJacob Faibussowitsch 
805498921bdaSJacob Faibussowitsch #undef SETERRQ
80559371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80569371c9d4SSatish Balay   do { \
805798921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
805898921bdaSJacob Faibussowitsch     return; \
805998921bdaSJacob Faibussowitsch   } while (0)
806098921bdaSJacob Faibussowitsch 
806198921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
806298921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
806398921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
806498921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
806598921bdaSJacob Faibussowitsch #else
806698921bdaSJacob Faibussowitsch #endif
8067d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8068d71ae5a4SJacob Faibussowitsch {
806998921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
807098921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
807198921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
807298921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
807398921bdaSJacob Faibussowitsch   PetscScalar value;
807498921bdaSJacob Faibussowitsch 
807598921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
807698921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80775f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
807898921bdaSJacob Faibussowitsch   {
807998921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
808098921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
808198921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
808298921bdaSJacob Faibussowitsch 
808398921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
808498921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
808598921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
808698921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
808798921bdaSJacob Faibussowitsch     MatScalar  *aa;
8088f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
808998921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
809098921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
809198921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
809298921bdaSJacob Faibussowitsch     MatScalar  *ba;
809398921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
809498921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
809598921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
809698921bdaSJacob Faibussowitsch 
809798921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
809898921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
809998921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
810098921bdaSJacob Faibussowitsch 
810198921bdaSJacob Faibussowitsch     PetscFunctionBegin;
81029566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
81039566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
810498921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
810598921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
81066bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
810798921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
810898921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
810998921bdaSJacob Faibussowitsch         lastcol1 = -1;
811098921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
811198921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
811298921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
811398921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
811498921bdaSJacob Faibussowitsch         low1     = 0;
811598921bdaSJacob Faibussowitsch         high1    = nrow1;
811698921bdaSJacob Faibussowitsch         lastcol2 = -1;
811798921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
811898921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
811998921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
812098921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
812198921bdaSJacob Faibussowitsch         low2     = 0;
812298921bdaSJacob Faibussowitsch         high2    = nrow2;
812398921bdaSJacob Faibussowitsch 
812498921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
812598921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
812698921bdaSJacob Faibussowitsch           else value = v[i + j * m];
812798921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
812898921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
812998921bdaSJacob Faibussowitsch             col = in[j] - cstart;
813098921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
813198921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
813298921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
813363a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
813498921bdaSJacob Faibussowitsch           } else {
813598921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
813648a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
813798921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8138eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
813998921bdaSJacob Faibussowitsch               col--;
814098921bdaSJacob Faibussowitsch #else
814198921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
814298921bdaSJacob Faibussowitsch #endif
8143f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
81449566063dSJacob Faibussowitsch                 PetscCall(MatDisAssemble_MPIAIJ(mat));
814598921bdaSJacob Faibussowitsch                 col = in[j];
814698921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
814798921bdaSJacob Faibussowitsch                 B        = aij->B;
814898921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81499371c9d4SSatish Balay                 bimax    = b->imax;
81509371c9d4SSatish Balay                 bi       = b->i;
81519371c9d4SSatish Balay                 bilen    = b->ilen;
81529371c9d4SSatish Balay                 bj       = b->j;
815398921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
815498921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
815598921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
815698921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
815798921bdaSJacob Faibussowitsch                 low2     = 0;
815898921bdaSJacob Faibussowitsch                 high2    = nrow2;
815998921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
816098921bdaSJacob Faibussowitsch                 ba       = b->a;
816198921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
816298921bdaSJacob Faibussowitsch               }
816398921bdaSJacob Faibussowitsch             } else col = in[j];
816498921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
816598921bdaSJacob Faibussowitsch           }
816698921bdaSJacob Faibussowitsch         }
816798921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
816898921bdaSJacob Faibussowitsch         if (roworiented) {
81699566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
817098921bdaSJacob Faibussowitsch         } else {
81719566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
817298921bdaSJacob Faibussowitsch         }
817398921bdaSJacob Faibussowitsch       }
817498921bdaSJacob Faibussowitsch     }
81759566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81769566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
817798921bdaSJacob Faibussowitsch   }
817898921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
817998921bdaSJacob Faibussowitsch }
818072833a62Smarkadams4 
818198921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
818298921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
818398921bdaSJacob Faibussowitsch  * original definitions */
81849566063dSJacob Faibussowitsch #undef PetscCall
818598921bdaSJacob Faibussowitsch #undef SETERRQ
8186