xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision d1a032db6cd7c39db5bfaa476c8e42d0c0ea531b)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */
10674b392bSAlexander #define TYPE AIJ
11674b392bSAlexander #define TYPE_AIJ
12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h"
13674b392bSAlexander #undef TYPE
14674b392bSAlexander #undef TYPE_AIJ
15674b392bSAlexander 
16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat)
1726cec326SBarry Smith {
1826cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1926cec326SBarry Smith 
2026cec326SBarry Smith   PetscFunctionBegin;
2126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
2226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
2326cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
2426cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
2526cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2826cec326SBarry Smith #else
2926cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
3026cec326SBarry Smith #endif
3126cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
3226cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
3326cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
3426cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
3526cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
36674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
37674b392bSAlexander }
38674b392bSAlexander 
39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat)
40674b392bSAlexander {
41674b392bSAlexander   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
42674b392bSAlexander   /* Save the nonzero states of the component matrices because those are what are used to determine
43674b392bSAlexander     the nonzero state of mat */
44674b392bSAlexander   PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate;
45674b392bSAlexander 
46674b392bSAlexander   PetscFunctionBegin;
47674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
48674b392bSAlexander   PetscCall(MatSetUp_MPI_Hash(mat));
49674b392bSAlexander   aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate;
50674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
51674b392bSAlexander }
52674b392bSAlexander 
53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
54674b392bSAlexander {
55674b392bSAlexander   PetscFunctionBegin;
56674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
5726cec326SBarry Smith 
5826cec326SBarry Smith   PetscCall(PetscFree(mat->data));
5926cec326SBarry Smith 
6026cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
6126cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
6226cec326SBarry Smith 
6326cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
6426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
69674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
7126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
7326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
7626cec326SBarry Smith #endif
7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
7926cec326SBarry Smith #endif
8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
8126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
8226cec326SBarry Smith #endif
8326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
8526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
8626cec326SBarry Smith #endif
87*d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
8826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
8926cec326SBarry Smith #endif
9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
9126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
9226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
9326cec326SBarry Smith #endif
9426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
9526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
9626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
9726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
9826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
9926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
10126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
10226cec326SBarry Smith #endif
10326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
10426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
10526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
10626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
10726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
10826cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
10926cec326SBarry Smith }
11026cec326SBarry Smith 
111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
112d71ae5a4SJacob Faibussowitsch {
1138a9c020eSBarry Smith   Mat B;
1148a9c020eSBarry Smith 
1158a9c020eSBarry Smith   PetscFunctionBegin;
1168a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
1178a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
1188a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
119501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
1203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1218a9c020eSBarry Smith }
1228a9c020eSBarry Smith 
123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
124d71ae5a4SJacob Faibussowitsch {
1258a9c020eSBarry Smith   Mat B;
1268a9c020eSBarry Smith 
1278a9c020eSBarry Smith   PetscFunctionBegin;
1288a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1298a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
130501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1328a9c020eSBarry Smith }
1338a9c020eSBarry Smith 
13401bebe75SBarry Smith /*MC
13501bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
13601bebe75SBarry Smith 
13711a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
13811a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
13911a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
14001bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14101bebe75SBarry Smith   the above preallocation routines for simplicity.
14201bebe75SBarry Smith 
14327430b45SBarry Smith    Options Database Key:
14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
14501bebe75SBarry Smith 
14611a5261eSBarry Smith   Developer Note:
1472ef1f0ffSBarry Smith   Level: beginner
1482ef1f0ffSBarry Smith 
14911a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
15001bebe75SBarry Smith    enough exist.
15101bebe75SBarry Smith 
1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
15301bebe75SBarry Smith M*/
15401bebe75SBarry Smith 
15501bebe75SBarry Smith /*MC
15601bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
15701bebe75SBarry Smith 
15811a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
15911a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
16011a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
16101bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
16201bebe75SBarry Smith   the above preallocation routines for simplicity.
16301bebe75SBarry Smith 
16427430b45SBarry Smith    Options Database Key:
16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
16601bebe75SBarry Smith 
16701bebe75SBarry Smith   Level: beginner
16801bebe75SBarry Smith 
1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
17001bebe75SBarry Smith M*/
17101bebe75SBarry Smith 
172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
173d71ae5a4SJacob Faibussowitsch {
174f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
175f74ef234SStefano Zampini 
176f74ef234SStefano Zampini   PetscFunctionBegin;
177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
178b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
179f74ef234SStefano Zampini #endif
1801baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1811baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1823120d049SRichard Tran Mills 
1833120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1843120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1853120d049SRichard Tran Mills    * to differ from the parent matrix. */
1861baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1871baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189f74ef234SStefano Zampini }
190f74ef234SStefano Zampini 
191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
192d71ae5a4SJacob Faibussowitsch {
19326bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
19426bda2c4Sstefano_zampini 
19526bda2c4Sstefano_zampini   PetscFunctionBegin;
19646533700Sstefano_zampini   if (mat->A) {
1979566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1989566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
19946533700Sstefano_zampini   }
2003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20126bda2c4Sstefano_zampini }
20226bda2c4Sstefano_zampini 
203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
204d71ae5a4SJacob Faibussowitsch {
20527d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
20627d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
20727d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
20827d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
209ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
21027d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
21127d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
21227d4218bSShri Abhyankar 
21327d4218bSShri Abhyankar   PetscFunctionBegin;
214f4259b30SLisandro Dalcin   *keptrows = NULL;
215ce496241SStefano Zampini 
21627d4218bSShri Abhyankar   ia = a->i;
21727d4218bSShri Abhyankar   ib = b->i;
2189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
22027d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22127d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22227d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22327d4218bSShri Abhyankar     if (!na && !nb) {
22427d4218bSShri Abhyankar       cnt++;
22527d4218bSShri Abhyankar       goto ok1;
22627d4218bSShri Abhyankar     }
227ce496241SStefano Zampini     aa = aav + ia[i];
22827d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
22927d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
23027d4218bSShri Abhyankar     }
2318e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23227d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23327d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
23427d4218bSShri Abhyankar     }
23527d4218bSShri Abhyankar     cnt++;
23627d4218bSShri Abhyankar   ok1:;
23727d4218bSShri Abhyankar   }
238462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
239ce496241SStefano Zampini   if (!n0rows) {
2409566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2419566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
243ce496241SStefano Zampini   }
2449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
24527d4218bSShri Abhyankar   cnt = 0;
24627d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
24727d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
24827d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
24927d4218bSShri Abhyankar     if (!na && !nb) continue;
250ce496241SStefano Zampini     aa = aav + ia[i];
25127d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
25227d4218bSShri Abhyankar       if (aa[j] != 0.0) {
25327d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
25427d4218bSShri Abhyankar         goto ok2;
25527d4218bSShri Abhyankar       }
25627d4218bSShri Abhyankar     }
2578e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
25827d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
25927d4218bSShri Abhyankar       if (bb[j] != 0.0) {
26027d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
26127d4218bSShri Abhyankar         goto ok2;
26227d4218bSShri Abhyankar       }
26327d4218bSShri Abhyankar     }
26427d4218bSShri Abhyankar   ok2:;
26527d4218bSShri Abhyankar   }
2669566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27027d4218bSShri Abhyankar }
27127d4218bSShri Abhyankar 
272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
273d71ae5a4SJacob Faibussowitsch {
27499e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
27594342113SStefano Zampini   PetscBool   cong;
27699e65526SBarry Smith 
27799e65526SBarry Smith   PetscFunctionBegin;
2789566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
27994342113SStefano Zampini   if (Y->assembled && cong) {
2809566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
28199e65526SBarry Smith   } else {
2829566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
28399e65526SBarry Smith   }
2843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28599e65526SBarry Smith }
28699e65526SBarry Smith 
287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
288d71ae5a4SJacob Faibussowitsch {
289f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
290f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
291f1f41ecbSJed Brown 
292f1f41ecbSJed Brown   PetscFunctionBegin;
2930298fd71SBarry Smith   *zrows = NULL;
2949566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2959566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
296f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2979566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
299f1f41ecbSJed Brown }
300f1f41ecbSJed Brown 
301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
302d71ae5a4SJacob Faibussowitsch {
3030716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
304a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
3050716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
3060716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
3070716a85fSBarry Smith   PetscReal         *work;
308ce496241SStefano Zampini   const PetscScalar *dummy;
3090716a85fSBarry Smith 
3100716a85fSBarry Smith   PetscFunctionBegin;
3119566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
3129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
3139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
3149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
3159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
3169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
317857cbf51SRichard Tran Mills   if (type == NORM_2) {
318ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
319ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
320857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
321ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
322ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
323857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
324ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
325ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
326857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
327ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
328ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
329857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
330ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
331ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
332857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
333857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
334e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3350716a85fSBarry Smith   } else {
336e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3370716a85fSBarry Smith   }
3389566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
339857cbf51SRichard Tran Mills   if (type == NORM_2) {
340a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
341857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
342a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3430716a85fSBarry Smith   }
3443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3450716a85fSBarry Smith }
3460716a85fSBarry Smith 
347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
348d71ae5a4SJacob Faibussowitsch {
349e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
350e52d2c62SBarry Smith   IS              sis, gis;
351e52d2c62SBarry Smith   const PetscInt *isis, *igis;
352e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
353e52d2c62SBarry Smith 
354e52d2c62SBarry Smith   PetscFunctionBegin;
3559566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3569566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3579566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3589566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3599566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3609566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
361e52d2c62SBarry Smith 
3629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3639566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3649566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
365e52d2c62SBarry Smith   n = ngis + nsis;
3669566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3679566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
368e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3699566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
370e52d2c62SBarry Smith 
3719566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3729566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3739566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3749566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
376e52d2c62SBarry Smith }
377e52d2c62SBarry Smith 
378dd6ea824SBarry Smith /*
3790f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3810f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
38372fa4726SStefano Zampini has an order N integer array but is fast to access.
3849e25ed09SBarry Smith */
385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
386d71ae5a4SJacob Faibussowitsch {
38744a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
388d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
389dbb450caSBarry Smith 
3903a40ed3dSBarry Smith   PetscFunctionBegin;
39108401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
393eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
394c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
395b1fc9764SSatish Balay #else
3969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
397905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
398b1fc9764SSatish Balay #endif
3993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4009e25ed09SBarry Smith }
4019e25ed09SBarry Smith 
402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
403a8f51744SPierre Jolivet   do { \
404db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
405db4deed7SKarl Rupp     else high1 = nrow1; \
406fd3458f5SBarry Smith     lastcol1 = col; \
407fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
408fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
409fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
410fd3458f5SBarry Smith       else low1 = t; \
411ba4e3ef2SSatish Balay     } \
412fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
413fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
414fd3458f5SBarry Smith       if (rp1[_i] == col) { \
4150c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4160c0d7e18SFande Kong           ap1[_i] += value; \
4179680b7ceSStefano Zampini           /* Not sure LogFlops will slow down the code or not */ \
4180c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4199371c9d4SSatish Balay         } else ap1[_i] = value; \
42030770e4dSSatish Balay         goto a_noinsert; \
4210520107fSSatish Balay       } \
4220520107fSSatish Balay     } \
4239371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4249371c9d4SSatish Balay       low1  = 0; \
4259371c9d4SSatish Balay       high1 = nrow1; \
4269371c9d4SSatish Balay       goto a_noinsert; \
4279371c9d4SSatish Balay     } \
4289371c9d4SSatish Balay     if (nonew == 1) { \
4299371c9d4SSatish Balay       low1  = 0; \
4309371c9d4SSatish Balay       high1 = nrow1; \
4319371c9d4SSatish Balay       goto a_noinsert; \
4329371c9d4SSatish Balay     } \
43308401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
434fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4359371c9d4SSatish Balay     N = nrow1++ - 1; \
4369371c9d4SSatish Balay     a->nz++; \
4379371c9d4SSatish Balay     high1++; \
4380520107fSSatish Balay     /* shift up all the later entries in this row */ \
4399566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4409566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
441fd3458f5SBarry Smith     rp1[_i] = col; \
442fd3458f5SBarry Smith     ap1[_i] = value; \
44330770e4dSSatish Balay   a_noinsert:; \
444fd3458f5SBarry Smith     ailen[row] = nrow1; \
445a8f51744SPierre Jolivet   } while (0)
4460a198c4cSBarry Smith 
447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
448a8f51744SPierre Jolivet   do { \
449db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
450db4deed7SKarl Rupp     else high2 = nrow2; \
451fd3458f5SBarry Smith     lastcol2 = col; \
452fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
453fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
454fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
455fd3458f5SBarry Smith       else low2 = t; \
456ba4e3ef2SSatish Balay     } \
457fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
458fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
459fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4600c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4610c0d7e18SFande Kong           ap2[_i] += value; \
4620c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4639371c9d4SSatish Balay         } else ap2[_i] = value; \
46430770e4dSSatish Balay         goto b_noinsert; \
46530770e4dSSatish Balay       } \
46630770e4dSSatish Balay     } \
4679371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4689371c9d4SSatish Balay       low2  = 0; \
4699371c9d4SSatish Balay       high2 = nrow2; \
4709371c9d4SSatish Balay       goto b_noinsert; \
4719371c9d4SSatish Balay     } \
4729371c9d4SSatish Balay     if (nonew == 1) { \
4739371c9d4SSatish Balay       low2  = 0; \
4749371c9d4SSatish Balay       high2 = nrow2; \
4759371c9d4SSatish Balay       goto b_noinsert; \
4769371c9d4SSatish Balay     } \
47708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
478fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4799371c9d4SSatish Balay     N = nrow2++ - 1; \
4809371c9d4SSatish Balay     b->nz++; \
4819371c9d4SSatish Balay     high2++; \
48230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4839566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4849566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
485fd3458f5SBarry Smith     rp2[_i] = col; \
486fd3458f5SBarry Smith     ap2[_i] = value; \
48730770e4dSSatish Balay   b_noinsert:; \
488fd3458f5SBarry Smith     bilen[row] = nrow2; \
489a8f51744SPierre Jolivet   } while (0)
49030770e4dSSatish Balay 
491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
492d71ae5a4SJacob Faibussowitsch {
4932fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4942fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4952fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
496fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4972fd7e33dSBarry Smith 
4982fd7e33dSBarry Smith   PetscFunctionBegin;
4992fd7e33dSBarry Smith   /* code only works for square matrices A */
5002fd7e33dSBarry Smith 
5012fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
5029566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
5032fd7e33dSBarry Smith   row = row - diag;
5042fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
5052fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
5062fd7e33dSBarry Smith   }
507fff043a9SJunchao Zhang   if (l) {
5089566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5099566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
5109566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
511fff043a9SJunchao Zhang   }
5122fd7e33dSBarry Smith 
5132fd7e33dSBarry Smith   /* diagonal part */
514fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
5159566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
51657508eceSPierre Jolivet     PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row]));
5179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
518fff043a9SJunchao Zhang   }
5192fd7e33dSBarry Smith 
5202fd7e33dSBarry Smith   /* right of diagonal part */
521fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5229566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5239566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
525fff043a9SJunchao Zhang   }
5263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5272fd7e33dSBarry Smith }
5282fd7e33dSBarry Smith 
529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
530d71ae5a4SJacob Faibussowitsch {
53144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
532071fcb05SBarry Smith   PetscScalar value = 0.0;
533d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
534d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
535ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5368a729477SBarry Smith 
5370520107fSSatish Balay   /* Some Variables required in the macro */
5384ee7247eSSatish Balay   Mat         A     = aij->A;
5394ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
54057809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
541ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
54230770e4dSSatish Balay   Mat         B                 = aij->B;
54330770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
544d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
545ce496241SStefano Zampini   MatScalar  *aa, *ba;
546fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5478d76821aSHong Zhang   PetscInt    nonew;
548a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5494ee7247eSSatish Balay 
5503a40ed3dSBarry Smith   PetscFunctionBegin;
5519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5538a729477SBarry Smith   for (i = 0; i < m; i++) {
5545ef9f2a5SBarry Smith     if (im[i] < 0) continue;
55508401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5564b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5574b0e389bSBarry Smith       row      = im[i] - rstart;
558fd3458f5SBarry Smith       lastcol1 = -1;
5598e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5608e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
561fd3458f5SBarry Smith       rmax1    = aimax[row];
562fd3458f5SBarry Smith       nrow1    = ailen[row];
563fd3458f5SBarry Smith       low1     = 0;
564fd3458f5SBarry Smith       high1    = nrow1;
565fd3458f5SBarry Smith       lastcol2 = -1;
5668e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5678e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
568fd3458f5SBarry Smith       rmax2    = bimax[row];
569d498b1e9SBarry Smith       nrow2    = bilen[row];
570fd3458f5SBarry Smith       low2     = 0;
571fd3458f5SBarry Smith       high2    = nrow2;
572fd3458f5SBarry Smith 
5731eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
574071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
575c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
576fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
577fd3458f5SBarry Smith           col   = in[j] - cstart;
5788d76821aSHong Zhang           nonew = a->nonew;
579d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
580f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
581f7d195e4SLawrence Mitchell           continue;
582f7d195e4SLawrence Mitchell         } else {
583f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
584227d817aSBarry Smith           if (mat->was_assembled) {
58548a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
587eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
588fa46199cSSatish Balay             col--;
589b1fc9764SSatish Balay #else
590905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
591b1fc9764SSatish Balay #endif
592f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
593eb14dd14SAlex Lindsay               PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));  /* Change aij->B from reduced/local format to expanded/global format */
5944b0e389bSBarry Smith               col = in[j];
5959bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
596f9508a3cSSatish Balay               B     = aij->B;
597f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5989371c9d4SSatish Balay               bimax = b->imax;
5999371c9d4SSatish Balay               bi    = b->i;
6009371c9d4SSatish Balay               bilen = b->ilen;
6019371c9d4SSatish Balay               bj    = b->j;
6029371c9d4SSatish Balay               ba    = b->a;
603cff58d65SJunchao Zhang               rp2   = PetscSafePointerPlusOffset(bj, bi[row]);
604cff58d65SJunchao Zhang               ap2   = PetscSafePointerPlusOffset(ba, bi[row]);
605d498b1e9SBarry Smith               rmax2 = bimax[row];
606d498b1e9SBarry Smith               nrow2 = bilen[row];
607d498b1e9SBarry Smith               low2  = 0;
608d498b1e9SBarry Smith               high2 = nrow2;
609d0f46423SBarry Smith               bm    = aij->B->rmap->n;
610f9508a3cSSatish Balay               ba    = b->a;
611d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
612966bd95aSPierre Jolivet               PetscCheck(1 == ((Mat_SeqAIJ *)aij->B->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
6139566063dSJacob Faibussowitsch               PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
6140587a0fcSBarry Smith             }
615c48de900SBarry Smith           } else col = in[j];
6168d76821aSHong Zhang           nonew = b->nonew;
617d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
6181eb62cbbSBarry Smith         }
6191eb62cbbSBarry Smith       }
6205ef9f2a5SBarry Smith     } else {
62128b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
62290f02eecSBarry Smith       if (!aij->donotstash) {
6235080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
624d36fbae8SSatish Balay         if (roworiented) {
6258e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
626d36fbae8SSatish Balay         } else {
6278e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6284b0e389bSBarry Smith         }
6291eb62cbbSBarry Smith       }
6308a729477SBarry Smith     }
63190f02eecSBarry Smith   }
6325519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6358a729477SBarry Smith }
6368a729477SBarry Smith 
6372b08fdbeSandi selinger /*
638904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6392b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
640904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6412b08fdbeSandi selinger */
642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
643d71ae5a4SJacob Faibussowitsch {
644904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
645904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6464cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
647904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
648904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
649904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
650904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
651904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6526dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
653904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
654904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
655904d1e70Sandi selinger 
656904d1e70Sandi selinger   PetscFunctionBegin;
657904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
658904d1e70Sandi selinger   for (j = 0; j < am; j++) {
659904d1e70Sandi selinger     dnz = onz = 0;
660904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6616dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
662904d1e70Sandi selinger       /* If column is in the diagonal */
663904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
664904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
665904d1e70Sandi selinger         dnz++;
666904d1e70Sandi selinger       } else { /* off-diagonal entries */
667904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
668904d1e70Sandi selinger         onz++;
669904d1e70Sandi selinger       }
670904d1e70Sandi selinger     }
671904d1e70Sandi selinger     ailen[j] = dnz;
672904d1e70Sandi selinger     bilen[j] = onz;
673904d1e70Sandi selinger   }
6743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
675904d1e70Sandi selinger }
676904d1e70Sandi selinger 
677904d1e70Sandi selinger /*
678904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
679904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6801de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6811de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6821de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
683904d1e70Sandi selinger */
684d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
685d71ae5a4SJacob Faibussowitsch {
6863a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6873a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6884cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
689f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6903a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6913a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6923a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6933a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6943a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6956dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6961de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
697904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
698904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
6993a063d27Sandi selinger 
7003a063d27Sandi selinger   PetscFunctionBegin;
7013a063d27Sandi selinger   /* Iterate over all rows of the matrix */
7023a063d27Sandi selinger   for (j = 0; j < am; j++) {
703904d1e70Sandi selinger     dnz_row = onz_row = 0;
704904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
705904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
706e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
707e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
708ae8e66a0Sandi selinger       /* If column is in the diagonal */
7093a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
710904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
711904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
712904d1e70Sandi selinger         dnz_row++;
713ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
714904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
715904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
716904d1e70Sandi selinger         onz_row++;
7173a063d27Sandi selinger       }
7183a063d27Sandi selinger     }
719904d1e70Sandi selinger     ailen[j] = dnz_row;
720904d1e70Sandi selinger     bilen[j] = onz_row;
7213a063d27Sandi selinger   }
7223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7233a063d27Sandi selinger }
7243a063d27Sandi selinger 
725ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
726d71ae5a4SJacob Faibussowitsch {
727b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
728d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
729d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
730b49de8d1SLois Curfman McInnes 
7313a40ed3dSBarry Smith   PetscFunctionBegin;
732b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
73354c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
73454c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
73585835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
736b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
737b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
73854c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
73954c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
740b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
741b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7429566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
743fa852ad4SSatish Balay       } else {
74448a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
745aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
746eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
747fa46199cSSatish Balay         col--;
748b1fc9764SSatish Balay #else
749905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
750b1fc9764SSatish Balay #endif
751e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
75248a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
753b49de8d1SLois Curfman McInnes       }
754b49de8d1SLois Curfman McInnes     }
755b49de8d1SLois Curfman McInnes   }
7563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
757b49de8d1SLois Curfman McInnes }
758bc5ccf88SSatish Balay 
759ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
760d71ae5a4SJacob Faibussowitsch {
761bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
762b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
763bc5ccf88SSatish Balay 
764bc5ccf88SSatish Balay   PetscFunctionBegin;
7653ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
766bc5ccf88SSatish Balay 
7679566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7689566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7699566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
771bc5ccf88SSatish Balay }
772bc5ccf88SSatish Balay 
773d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
774d71ae5a4SJacob Faibussowitsch {
775bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
776b1d57f15SBarry Smith   PetscMPIInt  n;
777b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
778e44c0bd4SBarry Smith   PetscInt    *row, *col;
779c0edf612SJunchao Zhang   PetscBool    all_assembled;
78087828ca2SBarry Smith   PetscScalar *val;
781bc5ccf88SSatish Balay 
78291c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7836e111a19SKarl Rupp 
784bc5ccf88SSatish Balay   PetscFunctionBegin;
7854cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
786a2d1c673SSatish Balay     while (1) {
7879566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
788a2d1c673SSatish Balay       if (!flg) break;
789a2d1c673SSatish Balay 
790bc5ccf88SSatish Balay       for (i = 0; i < n;) {
791bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7922205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7932205254eSKarl Rupp           if (row[j] != rstart) break;
7942205254eSKarl Rupp         }
795bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
796bc5ccf88SSatish Balay         else ncols = n - i;
797bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7989566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
799bc5ccf88SSatish Balay         i = j;
800bc5ccf88SSatish Balay       }
801bc5ccf88SSatish Balay     }
8029566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
803bc5ccf88SSatish Balay   }
8048c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
805c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
8069ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
8079ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
8089566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
8099566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
8109ecce9b1SRichard Tran Mills   }
811e2cf4d64SStefano Zampini #endif
8129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
8139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
814bc5ccf88SSatish Balay 
815b638e6b4SJunchao Zhang   /* determine if any process has disassembled, if so we must
816071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
817bc5ccf88SSatish Balay   /*
818bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
819b638e6b4SJunchao Zhang      no process disassembled thus we can skip this stuff
820bc5ccf88SSatish Balay   */
821bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
8225440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
823c0edf612SJunchao Zhang     if (mat->was_assembled && !all_assembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
824eb14dd14SAlex Lindsay       PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
825ad59fb31SSatish Balay     }
826ad59fb31SSatish Balay   }
82748a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8289566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8298c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
830c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
831e2cf4d64SStefano Zampini #endif
8329566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
834bc5ccf88SSatish Balay 
8359566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8362205254eSKarl Rupp 
837f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
838a30b2313SHong Zhang 
8399566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
840e56f5c9eSBarry Smith 
8414f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
842f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
843e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
844462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
845e56f5c9eSBarry Smith   }
8468c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
847c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
848e2cf4d64SStefano Zampini #endif
8493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
850bc5ccf88SSatish Balay }
851bc5ccf88SSatish Balay 
852ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
853d71ae5a4SJacob Faibussowitsch {
85444a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8553a40ed3dSBarry Smith 
8563a40ed3dSBarry Smith   PetscFunctionBegin;
8579566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8589566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8601eb62cbbSBarry Smith }
8611eb62cbbSBarry Smith 
862ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
863d71ae5a4SJacob Faibussowitsch {
8641b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8651b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8666e520ac8SStefano Zampini   PetscInt    r, len;
8679939a2d1SBarry Smith   PetscBool   cong;
8681eb62cbbSBarry Smith 
8693a40ed3dSBarry Smith   PetscFunctionBegin;
8706e520ac8SStefano Zampini   /* get locally owned rows */
8719566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8729566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
873dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
87497b48c8fSBarry Smith   if (x && b) {
8751b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8761b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8771b1dd7adSMatthew G. Knepley 
87828b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8799566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8809566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8811b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8829566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8839566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
88497b48c8fSBarry Smith   }
885a92ad425SStefano Zampini 
886a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8879566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8889566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
889a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
890a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
891a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
892a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
893a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
894a92ad425SStefano Zampini 
895a92ad425SStefano Zampini     nnwA = aijA->nonew;
896a92ad425SStefano Zampini     nnwB = aijB->nonew;
897a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
898a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
899a92ad425SStefano Zampini     if (!nnzA) {
9009566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
901a92ad425SStefano Zampini       aijA->nonew = 0;
902a92ad425SStefano Zampini     }
903a92ad425SStefano Zampini     if (!nnzB) {
9049566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
905a92ad425SStefano Zampini       aijB->nonew = 0;
906a92ad425SStefano Zampini     }
907a92ad425SStefano Zampini     /* Must zero here before the next loop */
9089566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9099566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9101b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
9111b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
912a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
9139566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
914e2d53e46SBarry Smith     }
915a92ad425SStefano Zampini     aijA->nonew = nnwA;
916a92ad425SStefano Zampini     aijB->nonew = nnwB;
9176eb55b6aSBarry Smith   } else {
9189566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9199566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9206eb55b6aSBarry Smith   }
9219566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9229566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9244f9cfa9eSBarry Smith 
9259939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
926f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9279939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
928462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9299939a2d1SBarry Smith   }
9303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9311eb62cbbSBarry Smith }
9321eb62cbbSBarry Smith 
933ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
934d71ae5a4SJacob Faibussowitsch {
9359c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9366497c311SBarry Smith   PetscInt           n = A->rmap->n;
937131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
93854bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
939131c27b5Sprj-   PetscMPIInt        p = 0;
94054bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
94154bd4135SMatthew G. Knepley   PetscSF            sf;
9429c7c4993SBarry Smith   const PetscScalar *xx;
943fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
944564f14d6SBarry Smith   Vec                xmask, lmask;
945564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
946564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
947564f14d6SBarry Smith   PetscScalar       *aa;
9489c7c4993SBarry Smith 
9499c7c4993SBarry Smith   PetscFunctionBegin;
95054bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
95254bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
95454bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
95554bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
956aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9575ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9589566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9595ba17502SJed Brown     }
96054bd4135SMatthew G. Knepley     rrows[r].rank  = p;
96154bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9629c7c4993SBarry Smith   }
9639566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9649566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
96554bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9669566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9679566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9689566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
96954bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9709371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9719371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
972564f14d6SBarry Smith   /* zero diagonal part of matrix */
9739566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9744cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9759566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9769566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9779566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
97854bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9799566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9809566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9819566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9829566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
983a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
984a92ad425SStefano Zampini     PetscBool cong;
985a92ad425SStefano Zampini 
9869566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
98728b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9889566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9899566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9909566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9919566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
992377aa5a1SBarry Smith   }
9939566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9944cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
996564f14d6SBarry Smith   ii = aij->i;
9978e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
998564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
999564f14d6SBarry Smith   if (aij->compressedrow.use) {
1000564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
1001564f14d6SBarry Smith     ii   = aij->compressedrow.i;
1002564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
1003564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1004564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1005564f14d6SBarry Smith       aj = aij->j + ii[i];
1006fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1007564f14d6SBarry Smith 
1008564f14d6SBarry Smith       for (j = 0; j < n; j++) {
100925266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1010377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
1011564f14d6SBarry Smith           *aa = 0.0;
1012564f14d6SBarry Smith         }
1013564f14d6SBarry Smith         aa++;
1014564f14d6SBarry Smith         aj++;
1015564f14d6SBarry Smith       }
1016564f14d6SBarry Smith       ridx++;
1017564f14d6SBarry Smith     }
1018564f14d6SBarry Smith   } else { /* do not use compressed row format */
1019564f14d6SBarry Smith     m = l->B->rmap->n;
1020564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1021564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1022564f14d6SBarry Smith       aj = aij->j + ii[i];
1023fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1024564f14d6SBarry Smith       for (j = 0; j < n; j++) {
102525266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1026377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1027564f14d6SBarry Smith           *aa = 0.0;
1028564f14d6SBarry Smith         }
1029564f14d6SBarry Smith         aa++;
1030564f14d6SBarry Smith         aj++;
1031564f14d6SBarry Smith       }
1032564f14d6SBarry Smith     }
1033564f14d6SBarry Smith   }
1034a92ad425SStefano Zampini   if (x && b) {
10359566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10369566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1037377aa5a1SBarry Smith   }
10389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10399566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10409566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10419566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10424f9cfa9eSBarry Smith 
10434f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1044f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10454f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1046462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10474f9cfa9eSBarry Smith   }
10483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10499c7c4993SBarry Smith }
10509c7c4993SBarry Smith 
1051ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1052d71ae5a4SJacob Faibussowitsch {
1053416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1054b1d57f15SBarry Smith   PetscInt    nt;
105519b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1056416022c9SBarry Smith 
10573a40ed3dSBarry Smith   PetscFunctionBegin;
10589566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
105908401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10609566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1061296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10629566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1063296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10651eb62cbbSBarry Smith }
10661eb62cbbSBarry Smith 
1067ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1068d71ae5a4SJacob Faibussowitsch {
1069bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1070bd0c2dcbSBarry Smith 
1071bd0c2dcbSBarry Smith   PetscFunctionBegin;
10729566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1074bd0c2dcbSBarry Smith }
1075bd0c2dcbSBarry Smith 
1076ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1077d71ae5a4SJacob Faibussowitsch {
1078416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
107901ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10803a40ed3dSBarry Smith 
10813a40ed3dSBarry Smith   PetscFunctionBegin;
10829566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10839566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10849566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10859566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1087da3a660dSBarry Smith }
1088da3a660dSBarry Smith 
1089ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1090d71ae5a4SJacob Faibussowitsch {
1091416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1092da3a660dSBarry Smith 
10933a40ed3dSBarry Smith   PetscFunctionBegin;
1094da3a660dSBarry Smith   /* do nondiagonal part */
10959566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1096da3a660dSBarry Smith   /* do local part */
10979566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10989613dc34SJunchao Zhang   /* add partial results together */
10999566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11009566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1102da3a660dSBarry Smith }
1103da3a660dSBarry Smith 
1104ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1105d71ae5a4SJacob Faibussowitsch {
11064f423910Svictorle   MPI_Comm    comm;
1107ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1108ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1109cd0d46ebSvictorle   IS          Me, Notme;
1110b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
111154d735aeSStefano Zampini   PetscBool   lf;
1112b1d57f15SBarry Smith   PetscMPIInt size;
1113cd0d46ebSvictorle 
1114cd0d46ebSvictorle   PetscFunctionBegin;
111542e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
11169566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
11175440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
11183ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11199566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11209566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11213ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
112242e5f5b4Svictorle 
11237dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11249566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11259566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1127cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1128cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11299566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11309566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11319566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
113266501d38Svictorle   Aoff = Aoffs[0];
11339566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
113466501d38Svictorle   Boff = Boffs[0];
11359566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11369566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11379566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11389566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11399566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11409566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1142cd0d46ebSvictorle }
1143cd0d46ebSvictorle 
1144ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1145d71ae5a4SJacob Faibussowitsch {
1146416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1147da3a660dSBarry Smith 
11483a40ed3dSBarry Smith   PetscFunctionBegin;
1149da3a660dSBarry Smith   /* do nondiagonal part */
11509566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1151da3a660dSBarry Smith   /* do local part */
11529566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11539613dc34SJunchao Zhang   /* add partial results together */
11549566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11559566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1157da3a660dSBarry Smith }
1158da3a660dSBarry Smith 
11591eb62cbbSBarry Smith /*
11601eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11611eb62cbbSBarry Smith    diagonal block
11621eb62cbbSBarry Smith */
1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1164d71ae5a4SJacob Faibussowitsch {
1165416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11663a40ed3dSBarry Smith 
11673a40ed3dSBarry Smith   PetscFunctionBegin;
116808401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1169aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11709566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11721eb62cbbSBarry Smith }
11731eb62cbbSBarry Smith 
1174ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1175d71ae5a4SJacob Faibussowitsch {
1176052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11773a40ed3dSBarry Smith 
11783a40ed3dSBarry Smith   PetscFunctionBegin;
11799566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11809566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1182052efed2SBarry Smith }
1183052efed2SBarry Smith 
1184ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1185d71ae5a4SJacob Faibussowitsch {
11868e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11878e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11888e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11893ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11902e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
119117a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
119217a3732bSBarry Smith   PetscInt64         nz, hnz;
11933ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11943ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11953ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
119617a3732bSBarry Smith   PetscMPIInt        rank;
11978e2fed03SBarry Smith 
11988e2fed03SBarry Smith   PetscFunctionBegin;
11999566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
12003ea6fe3dSLisandro Dalcin 
12013ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
12023ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
12033ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
12043ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
12053ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
12068e2fed03SBarry Smith   nz = A->nz + B->nz;
12073ea6fe3dSLisandro Dalcin 
12083ea6fe3dSLisandro Dalcin   /* write matrix header */
12090700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
12109371c9d4SSatish Balay   header[1] = M;
12119371c9d4SSatish Balay   header[2] = N;
121217a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
121317a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
1214835f2295SStefano Zampini   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
12159566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12168e2fed03SBarry Smith 
12173ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12193ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12209566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12219566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12228e2fed03SBarry Smith 
12233ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12253ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12263ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12273ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12283ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12298e2fed03SBarry Smith     }
12309371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12319371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12328e2fed03SBarry Smith   }
123317a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12349566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12359566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12368e2fed03SBarry Smith 
12373ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12413ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12423ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12433ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12442e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12458e2fed03SBarry Smith     }
12469371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12479371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12488e2fed03SBarry Smith   }
12499566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
125117a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12529566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12539566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12548e2fed03SBarry Smith 
12553ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12569566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12588e2fed03SBarry Smith }
12598e2fed03SBarry Smith 
12609804daf3SBarry Smith #include <petscdraw.h>
1261ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1262d71ae5a4SJacob Faibussowitsch {
126344a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
126432dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
12659f196a02SMartin Diehl   PetscBool         isdraw, isascii, isbinary;
1266b0a32e0cSBarry Smith   PetscViewer       sviewer;
1267f3ef73ceSBarry Smith   PetscViewerFormat format;
1268416022c9SBarry Smith 
12693a40ed3dSBarry Smith   PetscFunctionBegin;
12709566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12719f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
12729566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
12739f196a02SMartin Diehl   if (isascii) {
12749566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1275ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
12761690c2aeSBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12779566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12789566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1279835f2295SStefano Zampini       for (i = 0; i < size; i++) {
1280ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1281ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1282ef5fdb51SBarry Smith         navg += nz[i];
1283ef5fdb51SBarry Smith       }
12849566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1285ef5fdb51SBarry Smith       navg = navg / size;
12869566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12873ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1288ef5fdb51SBarry Smith     }
12899566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1290456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12914e220ebcSLois Curfman McInnes       MatInfo   info;
12926335e310SSatish Balay       PetscInt *inodes = NULL;
1293923f20ffSKris Buschelman 
12949566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12959566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12969566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12979566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1298923f20ffSKris Buschelman       if (!inodes) {
12999371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
1300835f2295SStefano Zampini                                                      info.memory));
13016831982aSBarry Smith       } else {
1302835f2295SStefano Zampini         PetscCall(
1303835f2295SStefano Zampini           PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory));
13046831982aSBarry Smith       }
13059566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
13069566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13079566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
13089566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13099566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
13109566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
13119566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
13129566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
13133ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1314fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1315923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13169566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1317923f20ffSKris Buschelman       if (inodes) {
13189566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1319d38fa0fbSBarry Smith       } else {
13209566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1321d38fa0fbSBarry Smith       }
13223ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13234aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13243ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
132508480c60SBarry Smith     }
13268e2fed03SBarry Smith   } else if (isbinary) {
13278e2fed03SBarry Smith     if (size == 1) {
13289566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13299566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13308e2fed03SBarry Smith     } else {
13319566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13328e2fed03SBarry Smith     }
13333ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13349f196a02SMartin Diehl   } else if (isascii && size == 1) {
13359566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13369566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13373ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13380f5bd95cSBarry Smith   } else if (isdraw) {
1339b0a32e0cSBarry Smith     PetscDraw draw;
1340ace3abfcSBarry Smith     PetscBool isnull;
13419566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13429566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13433ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
134419bcc07fSBarry Smith   }
134519bcc07fSBarry Smith 
134671e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
134771e56450SStefano Zampini     Mat A = NULL, Av;
134871e56450SStefano Zampini     IS  isrow, iscol;
13492ee70a88SLois Curfman McInnes 
13509566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13519566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13529566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13539566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
135471e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
135571e56450SStefano Zampini     /*
135671e56450SStefano Zampini     Mat *AA, A = NULL, Av;
135771e56450SStefano Zampini     IS  isrow,iscol;
135871e56450SStefano Zampini 
13599566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13609566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13619566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1362dd400576SPatrick Sanan     if (rank == 0) {
13639566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
136471e56450SStefano Zampini        A    = AA[0];
136571e56450SStefano Zampini        Av   = AA[0];
136695373324SBarry Smith     }
13679566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
136871e56450SStefano Zampini */
13699566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13709566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
137155843e3eSBarry Smith     /*
137255843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1373b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
137455843e3eSBarry Smith     */
13759566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1376dd400576SPatrick Sanan     if (rank == 0) {
137748a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13789566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
137995373324SBarry Smith     }
13809566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13819566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
138295373324SBarry Smith   }
13833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13841eb62cbbSBarry Smith }
13851eb62cbbSBarry Smith 
1386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1387d71ae5a4SJacob Faibussowitsch {
13889f196a02SMartin Diehl   PetscBool isascii, isdraw, issocket, isbinary;
1389416022c9SBarry Smith 
13903a40ed3dSBarry Smith   PetscFunctionBegin;
13919f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
13929566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13939566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13949566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
13959f196a02SMartin Diehl   if (isascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1397416022c9SBarry Smith }
1398416022c9SBarry Smith 
1399ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1400d71ae5a4SJacob Faibussowitsch {
140144a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1402f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1403ace3abfcSBarry Smith   PetscBool   hasop;
14048a729477SBarry Smith 
14053a40ed3dSBarry Smith   PetscFunctionBegin;
1406a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
14079566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14083ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1409a2b30743SBarry Smith   }
1410a2b30743SBarry Smith 
141148a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
14124e980039SJed Brown 
1413c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1414da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14159566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14162798e883SHong Zhang       its--;
1417da3a660dSBarry Smith     }
14182798e883SHong Zhang 
14192798e883SHong Zhang     while (its--) {
14209566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14219566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14222798e883SHong Zhang 
1423c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14249566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14259566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14262798e883SHong Zhang 
1427c14dc6b6SHong Zhang       /* local sweep */
14289566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14292798e883SHong Zhang     }
14303a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1431da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14329566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14332798e883SHong Zhang       its--;
1434da3a660dSBarry Smith     }
14352798e883SHong Zhang     while (its--) {
14369566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14379566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14382798e883SHong Zhang 
1439c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14409566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14419566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1442c14dc6b6SHong Zhang 
1443c14dc6b6SHong Zhang       /* local sweep */
14449566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14452798e883SHong Zhang     }
14463a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1447da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14489566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14492798e883SHong Zhang       its--;
1450da3a660dSBarry Smith     }
14512798e883SHong Zhang     while (its--) {
14529566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14539566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14542798e883SHong Zhang 
1455c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14569566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14579566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14582798e883SHong Zhang 
1459c14dc6b6SHong Zhang       /* local sweep */
14609566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14612798e883SHong Zhang     }
1462a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1463a7420bb7SBarry Smith     Vec xx1;
1464a7420bb7SBarry Smith 
14659566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14669566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1467a7420bb7SBarry Smith 
14689566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14699566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1470a7420bb7SBarry Smith     if (!mat->diag) {
14719566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14729566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1473a7420bb7SBarry Smith     }
14749566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1475bd0c2dcbSBarry Smith     if (hasop) {
14769566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1477bd0c2dcbSBarry Smith     } else {
14789566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1479bd0c2dcbSBarry Smith     }
14809566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1481887ee2caSBarry Smith 
14829566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1483a7420bb7SBarry Smith 
1484a7420bb7SBarry Smith     /* local sweep */
14859566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14869566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14879566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1488ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1489c14dc6b6SHong Zhang 
14909566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1491a0808db4SHong Zhang 
14927b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14948a729477SBarry Smith }
1495a66be287SLois Curfman McInnes 
1496ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1497d71ae5a4SJacob Faibussowitsch {
149872e6a0cfSJed Brown   Mat             aA, aB, Aperm;
149972e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
150072e6a0cfSJed Brown   PetscScalar    *aa, *ba;
150172e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
150272e6a0cfSJed Brown   PetscSF         rowsf, sf;
15030298fd71SBarry Smith   IS              parcolp = NULL;
150472e6a0cfSJed Brown   PetscBool       done;
150542e855d1Svictor 
150642e855d1Svictor   PetscFunctionBegin;
15079566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
15089566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
15099566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
15109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
151172e6a0cfSJed Brown 
151272e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
15139566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
15149566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
15159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
151672e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15179566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
151972e6a0cfSJed Brown 
152072e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15219566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
152472e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15259566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15269566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15279566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152872e6a0cfSJed Brown 
15299566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15309566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15319566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
153272e6a0cfSJed Brown 
153372e6a0cfSJed Brown   /* Find out where my gcols should go */
15349566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15369566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15379566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15389566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15399566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15409566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15419566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
154272e6a0cfSJed Brown 
15439566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15449566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15459566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
154672e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1547131c27b5Sprj-     PetscInt    row = rdest[i];
1548131c27b5Sprj-     PetscMPIInt rowner;
15499566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
155072e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1551131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1552131c27b5Sprj-       PetscMPIInt cowner;
15539566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
155472e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155572e6a0cfSJed Brown       else onnz[i]++;
155672e6a0cfSJed Brown     }
155772e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1558131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1559131c27b5Sprj-       PetscMPIInt cowner;
15609566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
156172e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
156272e6a0cfSJed Brown       else onnz[i]++;
156372e6a0cfSJed Brown     }
156472e6a0cfSJed Brown   }
15659566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15669566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15679566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15689566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15699566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
157072e6a0cfSJed Brown 
15719566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15729566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15739566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
157472e6a0cfSJed Brown   for (i = 0; i < m; i++) {
157572e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1576970468b0SJed Brown     PetscInt  j0, rowlen;
157772e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1578970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1579970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15809566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1581970468b0SJed Brown     }
158272e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1583970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1584970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15859566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1586970468b0SJed Brown     }
158772e6a0cfSJed Brown   }
15889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15909566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15919566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15949566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15959566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15969566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15979566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
159872e6a0cfSJed Brown   *B = Aperm;
15993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
160042e855d1Svictor }
160142e855d1Svictor 
1602ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1603d71ae5a4SJacob Faibussowitsch {
1604c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1605c5e4d11fSDmitry Karpeev 
1606c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
16079566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1608c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
16093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1610c5e4d11fSDmitry Karpeev }
1611c5e4d11fSDmitry Karpeev 
1612ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1613d71ae5a4SJacob Faibussowitsch {
1614a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1615a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16163966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1617a66be287SLois Curfman McInnes 
16183a40ed3dSBarry Smith   PetscFunctionBegin;
16194e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16209566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16212205254eSKarl Rupp 
16229371c9d4SSatish Balay   isend[0] = info->nz_used;
16239371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16249371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16259371c9d4SSatish Balay   isend[3] = info->memory;
16269371c9d4SSatish Balay   isend[4] = info->mallocs;
16272205254eSKarl Rupp 
16289566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16292205254eSKarl Rupp 
16309371c9d4SSatish Balay   isend[0] += info->nz_used;
16319371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16329371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16339371c9d4SSatish Balay   isend[3] += info->memory;
16349371c9d4SSatish Balay   isend[4] += info->mallocs;
1635a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16364e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16374e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16384e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16394e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16404e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1641a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1642462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16432205254eSKarl Rupp 
16444e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16454e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16464e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16474e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16484e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1649a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1650462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16512205254eSKarl Rupp 
16524e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16534e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16544e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16554e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16564e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1657a66be287SLois Curfman McInnes   }
16584e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16594e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16604e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1662a66be287SLois Curfman McInnes }
1663a66be287SLois Curfman McInnes 
1664d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1665d71ae5a4SJacob Faibussowitsch {
1666c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1667c74985f6SBarry Smith 
16683a40ed3dSBarry Smith   PetscFunctionBegin;
166912c028f9SKris Buschelman   switch (op) {
1670512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
167112c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
167228b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1673a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
167412c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16750ad02fcaSStefano Zampini   case MAT_USE_INODES:
167612c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16771a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1678fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16799566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16809566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168112c028f9SKris Buschelman     break;
168212c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
168343674050SBarry Smith     MatCheckPreallocated(A, 1);
16844e0d8c25SBarry Smith     a->roworiented = flg;
16852205254eSKarl Rupp 
16869566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168812c028f9SKris Buschelman     break;
1689d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1690d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1691d71ae5a4SJacob Faibussowitsch     break;
1692c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1693ffa07934SHong Zhang   case MAT_SPD:
169477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
169577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1696bf108f30SBarry Smith   case MAT_HERMITIAN:
1697bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1698b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1699b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1700b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
17019725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
170277e54ba9SKris Buschelman     break;
1703d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1704d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1705d71ae5a4SJacob Faibussowitsch     break;
1706d71ae5a4SJacob Faibussowitsch   default:
1707888c827cSStefano Zampini     break;
17083a40ed3dSBarry Smith   }
17093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1710c74985f6SBarry Smith }
1711c74985f6SBarry Smith 
1712d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1713d71ae5a4SJacob Faibussowitsch {
1714154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
171587828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1716d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1717d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1718b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
171939e00950SLois Curfman McInnes 
17203a40ed3dSBarry Smith   PetscFunctionBegin;
172128b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17227a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17237a0afa10SBarry Smith 
172470f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17257a0afa10SBarry Smith     /*
17267a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17277a0afa10SBarry Smith     */
17287a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1729b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1730d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17317a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17322205254eSKarl Rupp       if (max < tmp) max = tmp;
17337a0afa10SBarry Smith     }
17349566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17357a0afa10SBarry Smith   }
17367a0afa10SBarry Smith 
1737aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1738abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
173939e00950SLois Curfman McInnes 
17409371c9d4SSatish Balay   pvA = &vworkA;
17419371c9d4SSatish Balay   pcA = &cworkA;
17429371c9d4SSatish Balay   pvB = &vworkB;
17439371c9d4SSatish Balay   pcB = &cworkB;
17449371c9d4SSatish Balay   if (!v) {
17459371c9d4SSatish Balay     pvA = NULL;
17469371c9d4SSatish Balay     pvB = NULL;
17479371c9d4SSatish Balay   }
17489371c9d4SSatish Balay   if (!idx) {
17499371c9d4SSatish Balay     pcA = NULL;
17509371c9d4SSatish Balay     if (!v) pcB = NULL;
17519371c9d4SSatish Balay   }
17529566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17539566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1754154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1755154123eaSLois Curfman McInnes 
175670f0671dSBarry Smith   cmap = mat->garray;
1757154123eaSLois Curfman McInnes   if (v || idx) {
1758154123eaSLois Curfman McInnes     if (nztot) {
1759154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1760b1d57f15SBarry Smith       PetscInt imark = -1;
1761154123eaSLois Curfman McInnes       if (v) {
176270f0671dSBarry Smith         *v = v_p = mat->rowvalues;
176339e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
176470f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1765154123eaSLois Curfman McInnes           else break;
1766154123eaSLois Curfman McInnes         }
1767154123eaSLois Curfman McInnes         imark = i;
176870f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
176970f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1770154123eaSLois Curfman McInnes       }
1771154123eaSLois Curfman McInnes       if (idx) {
177270f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
177370f0671dSBarry Smith         if (imark > -1) {
1774ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
177570f0671dSBarry Smith         } else {
1776154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
177770f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1778154123eaSLois Curfman McInnes             else break;
1779154123eaSLois Curfman McInnes           }
1780154123eaSLois Curfman McInnes           imark = i;
178170f0671dSBarry Smith         }
178270f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
178370f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
178439e00950SLois Curfman McInnes       }
17853f97c4b0SBarry Smith     } else {
1786f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1787f4259b30SLisandro Dalcin       if (v) *v = NULL;
17881ca473b0SSatish Balay     }
1789154123eaSLois Curfman McInnes   }
179039e00950SLois Curfman McInnes   *nz = nztot;
17919566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17929566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179439e00950SLois Curfman McInnes }
179539e00950SLois Curfman McInnes 
1796d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1797d71ae5a4SJacob Faibussowitsch {
17987a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
17993a40ed3dSBarry Smith 
18003a40ed3dSBarry Smith   PetscFunctionBegin;
180128b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
18027a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
18033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
180439e00950SLois Curfman McInnes }
180539e00950SLois Curfman McInnes 
1806ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1807d71ae5a4SJacob Faibussowitsch {
1808855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1809ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1810d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1811329f5518SBarry Smith   PetscReal        sum = 0.0;
1812fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
181304ca555eSLois Curfman McInnes 
18143a40ed3dSBarry Smith   PetscFunctionBegin;
181517699dbbSLois Curfman McInnes   if (aij->size == 1) {
18169566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
181737fa93a5SLois Curfman McInnes   } else {
18189566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
182004ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1821fff043a9SJunchao Zhang       v = amata;
182204ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18239371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18249371c9d4SSatish Balay         v++;
182504ca555eSLois Curfman McInnes       }
1826fff043a9SJunchao Zhang       v = bmata;
182704ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18289371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18299371c9d4SSatish Balay         v++;
183004ca555eSLois Curfman McInnes       }
1831462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18328f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18339566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18343a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1835e91c04dfSPierre Jolivet       PetscReal *tmp;
1836b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18379566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
183804ca555eSLois Curfman McInnes       *norm = 0.0;
18399371c9d4SSatish Balay       v     = amata;
18409371c9d4SSatish Balay       jj    = amat->j;
184104ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18429371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18439371c9d4SSatish Balay         v++;
184404ca555eSLois Curfman McInnes       }
18459371c9d4SSatish Balay       v  = bmata;
18469371c9d4SSatish Balay       jj = bmat->j;
184704ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18489371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18499371c9d4SSatish Balay         v++;
185004ca555eSLois Curfman McInnes       }
1851e91c04dfSPierre Jolivet       PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1852d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
1853e91c04dfSPierre Jolivet         if (tmp[j] > *norm) *norm = tmp[j];
185404ca555eSLois Curfman McInnes       }
18559566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18569566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18573a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1858329f5518SBarry Smith       PetscReal ntemp = 0.0;
1859d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18608e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
186104ca555eSLois Curfman McInnes         sum = 0.0;
186204ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18639371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18649371c9d4SSatish Balay           v++;
186504ca555eSLois Curfman McInnes         }
18668e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
186704ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18689371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18699371c9d4SSatish Balay           v++;
187004ca555eSLois Curfman McInnes         }
1871515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
187204ca555eSLois Curfman McInnes       }
1873462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18749566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1875ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18769566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18779566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
187837fa93a5SLois Curfman McInnes   }
18793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1880855ac2c5SLois Curfman McInnes }
1881855ac2c5SLois Curfman McInnes 
1882ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1883d71ae5a4SJacob Faibussowitsch {
1884a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1885a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1886071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1887071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1888a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1889ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1890b7c46309SBarry Smith 
18913a40ed3dSBarry Smith   PetscFunctionBegin;
18927fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18939371c9d4SSatish Balay   ma = A->rmap->n;
18949371c9d4SSatish Balay   na = A->cmap->n;
18959371c9d4SSatish Balay   mb = a->B->rmap->n;
18969371c9d4SSatish Balay   nb = a->B->cmap->n;
18979371c9d4SSatish Balay   ai = Aloc->i;
18989371c9d4SSatish Balay   aj = Aloc->j;
18999371c9d4SSatish Balay   bi = Bloc->i;
19009371c9d4SSatish Balay   bj = Bloc->j;
1901fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
190280bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
190380bcc5a1SJed Brown     PetscSFNode         *oloc;
1904713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
190580bcc5a1SJed Brown 
19069566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
190780bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19089566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1909cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
191080bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19119566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
191280bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
191380bcc5a1SJed Brown     /* map those to global */
19149566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19159566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19169566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19179566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
191857168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
191957168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19209566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1921d4bb536fSBarry Smith 
19229566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19239566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
192458b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(B, A->cmap->bs, A->rmap->bs));
19259566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19269566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19279566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1928fc4dec0aSBarry Smith   } else {
1929fc4dec0aSBarry Smith     B = *matout;
19309566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1931fc4dec0aSBarry Smith   }
1932b7c46309SBarry Smith 
1933f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1934a8661f62Sandi selinger   A_diag      = a->A;
1935a8661f62Sandi selinger   B_diag      = &b->A;
1936a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1937a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1938a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1939a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1940f79cb1a0Sandi selinger 
1941f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1942ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1943f79cb1a0Sandi selinger 
19444cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1945a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19467fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19479566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1948f79cb1a0Sandi selinger 
1949b7c46309SBarry Smith   /* copy over the B part */
19509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1952ce496241SStefano Zampini   pbv = bv;
1953d0f46423SBarry Smith   row = A->rmap->rstart;
19542205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
195561a2fbbaSHong Zhang   cols_tmp = cols;
1956da668accSHong Zhang   for (i = 0; i < mb; i++) {
1957da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19589566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19592205254eSKarl Rupp     row++;
1960720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1961720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1962b7c46309SBarry Smith   }
19639566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1965fc73b1b3SBarry Smith 
19669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1968cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19690de55854SLois Curfman McInnes     *matout = B;
19700de55854SLois Curfman McInnes   } else {
19719566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19720de55854SLois Curfman McInnes   }
19733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1974b7c46309SBarry Smith }
1975b7c46309SBarry Smith 
1976ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1977d71ae5a4SJacob Faibussowitsch {
19784b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19794b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1980b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1981a008b906SSatish Balay 
19823a40ed3dSBarry Smith   PetscFunctionBegin;
19839566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19844b967eb1SSatish Balay   if (rr) {
19859566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
198608401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19874b967eb1SSatish Balay     /* Overlap communication with computation. */
19889566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1989a008b906SSatish Balay   }
19904b967eb1SSatish Balay   if (ll) {
19919566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
199208401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1993dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19944b967eb1SSatish Balay   }
19954b967eb1SSatish Balay   /* scale  the diagonal block */
1996dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19974b967eb1SSatish Balay 
19984b967eb1SSatish Balay   if (rr) {
19994b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
20009566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
2001dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
20024b967eb1SSatish Balay   }
20033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2004a008b906SSatish Balay }
2005a008b906SSatish Balay 
2006ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2007d71ae5a4SJacob Faibussowitsch {
2008bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20093a40ed3dSBarry Smith 
20103a40ed3dSBarry Smith   PetscFunctionBegin;
20119566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2013bb5a7306SBarry Smith }
2014bb5a7306SBarry Smith 
2015ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2016d71ae5a4SJacob Faibussowitsch {
2017d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2018d4bb536fSBarry Smith   Mat         a, b, c, d;
2019ace3abfcSBarry Smith   PetscBool   flg;
2020d4bb536fSBarry Smith 
20213a40ed3dSBarry Smith   PetscFunctionBegin;
20229371c9d4SSatish Balay   a = matA->A;
20239371c9d4SSatish Balay   b = matA->B;
20249371c9d4SSatish Balay   c = matB->A;
20259371c9d4SSatish Balay   d = matB->B;
2026d4bb536fSBarry Smith 
20279566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
202848a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
20295440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2031d4bb536fSBarry Smith }
2032d4bb536fSBarry Smith 
2033ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2034d71ae5a4SJacob Faibussowitsch {
2035cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2036cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2037cb5b572fSBarry Smith 
2038cb5b572fSBarry Smith   PetscFunctionBegin;
203933f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
204033f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2041cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2042cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2043cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2044cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2045cb5b572fSBarry Smith        then copying the submatrices */
20469566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2047cb5b572fSBarry Smith   } else {
20489566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20499566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2050cb5b572fSBarry Smith   }
20519566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2053cb5b572fSBarry Smith }
2054cb5b572fSBarry Smith 
2055001ddc4fSHong Zhang /*
2056001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2057001ddc4fSHong Zhang    have different nonzero structure.
2058001ddc4fSHong Zhang */
2059d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2060d71ae5a4SJacob Faibussowitsch {
2061001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
206295b7e79eSJed Brown 
206395b7e79eSJed Brown   PetscFunctionBegin;
206495b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
206595b7e79eSJed Brown   for (i = 0; i < m; i++) {
20668e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2067001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2068001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
206995b7e79eSJed Brown     nnz[i] = 0;
207095b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2071001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2072001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
207395b7e79eSJed Brown       nnz[i]++;
207495b7e79eSJed Brown     }
207595b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
207695b7e79eSJed Brown   }
20773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207895b7e79eSJed Brown }
207995b7e79eSJed Brown 
2080001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2081d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2082d71ae5a4SJacob Faibussowitsch {
2083001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2084001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2085001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2086001ddc4fSHong Zhang 
2087001ddc4fSHong Zhang   PetscFunctionBegin;
20889566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2090001ddc4fSHong Zhang }
2091001ddc4fSHong Zhang 
2092ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2093d71ae5a4SJacob Faibussowitsch {
2094ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2095ac90fabeSBarry Smith 
2096ac90fabeSBarry Smith   PetscFunctionBegin;
2097ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
20989566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
20999566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2100ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
21019566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2102ac90fabeSBarry Smith   } else {
21039f5f6813SShri Abhyankar     Mat       B;
21049f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2105d9d719b4SStefano Zampini 
21069566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21089566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21099566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21109566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21119566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21129566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21139566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21149566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21159566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21169566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21179566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21189566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2119ac90fabeSBarry Smith   }
21203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2121ac90fabeSBarry Smith }
2122ac90fabeSBarry Smith 
21232726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2124354c94deSBarry Smith 
2125ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2126d71ae5a4SJacob Faibussowitsch {
21275f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21285f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2129354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2130354c94deSBarry Smith 
21319566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21329566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21335f80ce2aSJacob Faibussowitsch   }
21343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2135354c94deSBarry Smith }
2136354c94deSBarry Smith 
2137ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2138d71ae5a4SJacob Faibussowitsch {
213999cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214099cafbc1SBarry Smith 
214199cafbc1SBarry Smith   PetscFunctionBegin;
21429566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21439566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214599cafbc1SBarry Smith }
214699cafbc1SBarry Smith 
2147ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2148d71ae5a4SJacob Faibussowitsch {
214999cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
215099cafbc1SBarry Smith 
215199cafbc1SBarry Smith   PetscFunctionBegin;
21529566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21539566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215599cafbc1SBarry Smith }
215699cafbc1SBarry Smith 
2157ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2158d71ae5a4SJacob Faibussowitsch {
2159c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2160475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
216162e5df07SMark Adams   PetscScalar       *vv;
2162475b8b61SHong Zhang   Vec                vB, vA;
216362e5df07SMark Adams   const PetscScalar *va, *vb;
2164c91732d9SHong Zhang 
2165c91732d9SHong Zhang   PetscFunctionBegin;
2166c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
21679566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2168475b8b61SHong Zhang 
216962e5df07SMark Adams   PetscCall(VecGetArrayRead(vA, &va));
2170c91732d9SHong Zhang   if (idx) {
2171475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2172d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2173c91732d9SHong Zhang     }
2174c91732d9SHong Zhang   }
2175c91732d9SHong Zhang 
2176c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
21779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2179c91732d9SHong Zhang 
21809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2182475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2183c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2184475b8b61SHong Zhang       vv[i] = vb[i];
2185c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2186475b8b61SHong Zhang     } else {
2187475b8b61SHong Zhang       vv[i] = va[i];
21889371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2189c91732d9SHong Zhang     }
2190c91732d9SHong Zhang   }
219162e5df07SMark Adams   PetscCall(VecRestoreArrayWrite(v, &vv));
219262e5df07SMark Adams   PetscCall(VecRestoreArrayRead(vA, &va));
21939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21949566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2198c91732d9SHong Zhang }
2199c91732d9SHong Zhang 
2200eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2201eede4a3fSMark Adams {
2202eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2203eede4a3fSMark Adams   Vec         vB, vA;
2204eede4a3fSMark Adams 
2205eede4a3fSMark Adams   PetscFunctionBegin;
2206c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
2207eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2208c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
2209eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2210eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2211eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2212eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2213eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2214eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2215eede4a3fSMark Adams }
2216eede4a3fSMark Adams 
2217ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2218d71ae5a4SJacob Faibussowitsch {
2219f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2220f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2221f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2222f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2223f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2224f07e67edSHong Zhang   Vec                diagV, offdiagV;
2225ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2226ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2227f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2228f07e67edSHong Zhang   Mat                B = mat->B;
2229f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2230c87e5d42SMatthew Knepley 
2231c87e5d42SMatthew Knepley   PetscFunctionBegin;
2232f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2233f07e67edSHong Zhang   if (A->cmap->N == n) {
22349566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22359566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22369566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22379566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22389566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22393ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2240f07e67edSHong Zhang   } else if (n == 0) {
2241f07e67edSHong Zhang     if (m) {
22429566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22439371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22449371c9d4SSatish Balay         a[r] = 0.0;
22459371c9d4SSatish Balay         if (idx) idx[r] = -1;
22469371c9d4SSatish Balay       }
22479566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2248f07e67edSHong Zhang     }
22493ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2250f07e67edSHong Zhang   }
2251f07e67edSHong Zhang 
22529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22539566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22549566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22559566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2256f07e67edSHong Zhang 
2257f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22589566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2259ce496241SStefano Zampini   ba = bav;
2260f07e67edSHong Zhang   bi = b->i;
2261f07e67edSHong Zhang   bj = b->j;
22629566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2263f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2264f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2265f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22669371c9d4SSatish Balay       offdiagA[r]   = *ba;
22679371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2268f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2269f07e67edSHong Zhang       offdiagA[r] = 0.0;
2270f07e67edSHong Zhang 
2271f07e67edSHong Zhang       /* Find first hole in the cmap */
2272f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2273f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2274f07e67edSHong Zhang         if (col > j && j < cstart) {
2275f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2276f07e67edSHong Zhang           break;
2277f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2278f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2279f07e67edSHong Zhang           break;
2280f07e67edSHong Zhang         }
2281f07e67edSHong Zhang       }
22824e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2283f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2284f07e67edSHong Zhang         if (ncols == 0) {
2285f07e67edSHong Zhang           if (cstart) {
2286f07e67edSHong Zhang             offdiagIdx[r] = 0;
2287f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2288f07e67edSHong Zhang         } else { /* ncols > 0 */
2289f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2290f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2291f07e67edSHong Zhang         }
2292f07e67edSHong Zhang       }
2293f07e67edSHong Zhang     }
2294f07e67edSHong Zhang 
2295f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22969371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22979371c9d4SSatish Balay         offdiagA[r]   = *ba;
22989371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
22999371c9d4SSatish Balay       }
23009371c9d4SSatish Balay       ba++;
23019371c9d4SSatish Balay       bj++;
2302f07e67edSHong Zhang     }
2303f07e67edSHong Zhang   }
2304f07e67edSHong Zhang 
23059566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
23069566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2307f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2308f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2309f07e67edSHong Zhang       a[r] = diagA[r];
2310f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2311f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2312f07e67edSHong Zhang       a[r] = diagA[r];
2313c87e5d42SMatthew Knepley       if (idx) {
2314f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2315f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2316f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2317f07e67edSHong Zhang       }
2318f07e67edSHong Zhang     } else {
2319f07e67edSHong Zhang       a[r] = offdiagA[r];
2320f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2321c87e5d42SMatthew Knepley     }
2322c87e5d42SMatthew Knepley   }
23239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23249566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23279566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23289566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23299566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2331c87e5d42SMatthew Knepley }
2332c87e5d42SMatthew Knepley 
2333ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2334d71ae5a4SJacob Faibussowitsch {
233503bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2336fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2337fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
233803bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
233903bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
234003bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2341ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2342ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2343fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2344fa213d2fSHong Zhang   Mat                B = mat->B;
2345fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
234603bc72f1SMatthew Knepley 
234703bc72f1SMatthew Knepley   PetscFunctionBegin;
2348fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2349fa213d2fSHong Zhang   if (A->cmap->N == n) {
23509566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23519566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23529566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23539566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23549566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23553ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2356fa213d2fSHong Zhang   } else if (n == 0) {
2357fa213d2fSHong Zhang     if (m) {
23589566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23599371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23609371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23619371c9d4SSatish Balay         if (idx) idx[r] = -1;
23629371c9d4SSatish Balay       }
23639566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2364fa213d2fSHong Zhang     }
23653ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2366fa213d2fSHong Zhang   }
2367fa213d2fSHong Zhang 
23689566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23699566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23709566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23719566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2372fa213d2fSHong Zhang 
2373fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23749566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2375ce496241SStefano Zampini   ba = bav;
2376fa213d2fSHong Zhang   bi = b->i;
2377fa213d2fSHong Zhang   bj = b->j;
23789566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2379fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2380fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2381fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23829371c9d4SSatish Balay       offdiagA[r]   = *ba;
23839371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2384fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2385fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2386fa213d2fSHong Zhang 
2387fa213d2fSHong Zhang       /* Find first hole in the cmap */
2388fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2389fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2390fa213d2fSHong Zhang         if (col > j && j < cstart) {
2391fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2392fa213d2fSHong Zhang           break;
2393fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2394fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2395fa213d2fSHong Zhang           break;
2396fa213d2fSHong Zhang         }
2397fa213d2fSHong Zhang       }
23984e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2399fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2400fa213d2fSHong Zhang         if (ncols == 0) {
2401fa213d2fSHong Zhang           if (cstart) {
2402fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2403fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2404fa213d2fSHong Zhang         } else { /* ncols > 0 */
2405fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2406fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2407fa213d2fSHong Zhang         }
2408fa213d2fSHong Zhang       }
2409fa213d2fSHong Zhang     }
2410fa213d2fSHong Zhang 
2411fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24129371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24139371c9d4SSatish Balay         offdiagA[r]   = *ba;
24149371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24159371c9d4SSatish Balay       }
24169371c9d4SSatish Balay       ba++;
24179371c9d4SSatish Balay       bj++;
2418fa213d2fSHong Zhang     }
2419fa213d2fSHong Zhang   }
2420fa213d2fSHong Zhang 
24219566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24229566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2423fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2424fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
242503bc72f1SMatthew Knepley       a[r] = diagA[r];
2426fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2427fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2428fa213d2fSHong Zhang       a[r] = diagA[r];
2429fa213d2fSHong Zhang       if (idx) {
2430fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
243103bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2432fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2433fa213d2fSHong Zhang       }
243403bc72f1SMatthew Knepley     } else {
243503bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2436fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
243703bc72f1SMatthew Knepley     }
243803bc72f1SMatthew Knepley   }
24399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24419566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24439566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24449566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24459566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244703bc72f1SMatthew Knepley }
244803bc72f1SMatthew Knepley 
2449ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2450d71ae5a4SJacob Faibussowitsch {
2451c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24521a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24531a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2454c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2455c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2456c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2457ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2458ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24591a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24601a254869SHong Zhang   Mat                B = mat->B;
24611a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2462c87e5d42SMatthew Knepley 
2463c87e5d42SMatthew Knepley   PetscFunctionBegin;
24641a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24651a254869SHong Zhang   if (A->cmap->N == n) {
24669566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24679566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24689566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24699566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24709566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24713ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24721a254869SHong Zhang   } else if (n == 0) {
24731a254869SHong Zhang     if (m) {
24749566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24759371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24769371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24779371c9d4SSatish Balay         if (idx) idx[r] = -1;
24789371c9d4SSatish Balay       }
24799566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24801a254869SHong Zhang     }
24813ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24821a254869SHong Zhang   }
24831a254869SHong Zhang 
24849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24859566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24869566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24879566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24881a254869SHong Zhang 
24891a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24909566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2491ce496241SStefano Zampini   ba = bav;
24921a254869SHong Zhang   bi = b->i;
24931a254869SHong Zhang   bj = b->j;
24949566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24951a254869SHong Zhang   for (r = 0; r < m; r++) {
24961a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24971a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24989371c9d4SSatish Balay       offdiagA[r]   = *ba;
24999371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
25001a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
25011a254869SHong Zhang       offdiagA[r] = 0.0;
25021a254869SHong Zhang 
25031a254869SHong Zhang       /* Find first hole in the cmap */
25041a254869SHong Zhang       for (j = 0; j < ncols; j++) {
25051a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
25061a254869SHong Zhang         if (col > j && j < cstart) {
25071a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25081a254869SHong Zhang           break;
25091a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25101a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25111a254869SHong Zhang           break;
25121a254869SHong Zhang         }
25131a254869SHong Zhang       }
25144e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25151a254869SHong Zhang         /* a hole is outside compressed Bcols */
25161a254869SHong Zhang         if (ncols == 0) {
25171a254869SHong Zhang           if (cstart) {
25181a254869SHong Zhang             offdiagIdx[r] = 0;
25191a254869SHong Zhang           } else offdiagIdx[r] = cend;
25201a254869SHong Zhang         } else { /* ncols > 0 */
25211a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25221a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25231a254869SHong Zhang         }
25241a254869SHong Zhang       }
25251a254869SHong Zhang     }
25261a254869SHong Zhang 
25271a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25289371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25299371c9d4SSatish Balay         offdiagA[r]   = *ba;
25309371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25319371c9d4SSatish Balay       }
25329371c9d4SSatish Balay       ba++;
25339371c9d4SSatish Balay       bj++;
25341a254869SHong Zhang     }
25351a254869SHong Zhang   }
25361a254869SHong Zhang 
25379566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25389566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25391a254869SHong Zhang   for (r = 0; r < m; ++r) {
25401a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2541c87e5d42SMatthew Knepley       a[r] = diagA[r];
25421a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25431a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25441a254869SHong Zhang       a[r] = diagA[r];
25451a254869SHong Zhang       if (idx) {
25461a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2547c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25481a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25491a254869SHong Zhang       }
2550c87e5d42SMatthew Knepley     } else {
2551c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25521a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2553c87e5d42SMatthew Knepley     }
2554c87e5d42SMatthew Knepley   }
25559566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25569566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25579566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25599566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25609566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25619566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2563c87e5d42SMatthew Knepley }
2564c87e5d42SMatthew Knepley 
2565d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2566d71ae5a4SJacob Faibussowitsch {
2567f6d58c54SBarry Smith   Mat *dummy;
25685494a064SHong Zhang 
25695494a064SHong Zhang   PetscFunctionBegin;
25709566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2571f6d58c54SBarry Smith   *newmat = *dummy;
25729566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25745494a064SHong Zhang }
25755494a064SHong Zhang 
2576ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2577d71ae5a4SJacob Faibussowitsch {
2578bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2579bbead8a2SBarry Smith 
2580bbead8a2SBarry Smith   PetscFunctionBegin;
25819566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25827b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2584bbead8a2SBarry Smith }
2585bbead8a2SBarry Smith 
2586d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2587d71ae5a4SJacob Faibussowitsch {
258873a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
258973a71a0fSBarry Smith 
259073a71a0fSBarry Smith   PetscFunctionBegin;
259108401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25929566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2593679944adSJunchao Zhang   if (x->assembled) {
25949566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2595679944adSJunchao Zhang   } else {
25969566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2597679944adSJunchao Zhang   }
25989566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
25999566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
26003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
260173a71a0fSBarry Smith }
2602bbead8a2SBarry Smith 
2603ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2604d71ae5a4SJacob Faibussowitsch {
2605b1b1104fSBarry Smith   PetscFunctionBegin;
2606b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2607b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2609b1b1104fSBarry Smith }
2610b1b1104fSBarry Smith 
2611b1b1104fSBarry Smith /*@
2612f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2613f2afee66SBarry Smith 
26142ef1f0ffSBarry Smith   Not Collective
2615f2afee66SBarry Smith 
2616f2afee66SBarry Smith   Input Parameter:
2617f2afee66SBarry Smith . A - the matrix
2618f2afee66SBarry Smith 
2619f2afee66SBarry Smith   Output Parameter:
2620f2afee66SBarry Smith . nz - the number of nonzeros
2621f2afee66SBarry Smith 
2622f2afee66SBarry Smith   Level: advanced
2623f2afee66SBarry Smith 
2624fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2625f2afee66SBarry Smith @*/
2626d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2627d71ae5a4SJacob Faibussowitsch {
2628f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2629f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2630dfebb78cSStefano Zampini   PetscBool   isaij;
2631f2afee66SBarry Smith 
2632f2afee66SBarry Smith   PetscFunctionBegin;
2633dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2634dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2635f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2637f2afee66SBarry Smith }
2638f2afee66SBarry Smith 
2639f2afee66SBarry Smith /*@
2640b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2641b1b1104fSBarry Smith 
2642c3339decSBarry Smith   Collective
2643b1b1104fSBarry Smith 
2644b1b1104fSBarry Smith   Input Parameters:
2645b1b1104fSBarry Smith + A  - the matrix
264611a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2647b1b1104fSBarry Smith 
264896a0c994SBarry Smith   Level: advanced
264996a0c994SBarry Smith 
2650fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2651b1b1104fSBarry Smith @*/
2652d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2653d71ae5a4SJacob Faibussowitsch {
2654b1b1104fSBarry Smith   PetscFunctionBegin;
2655cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2657b1b1104fSBarry Smith }
2658b1b1104fSBarry Smith 
2659ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject)
2660d71ae5a4SJacob Faibussowitsch {
2661b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2662b1b1104fSBarry Smith 
2663b1b1104fSBarry Smith   PetscFunctionBegin;
2664d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2665b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26669566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26671baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2668d0609cedSBarry Smith   PetscOptionsHeadEnd();
26693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2670b1b1104fSBarry Smith }
2671b1b1104fSBarry Smith 
2672ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2673d71ae5a4SJacob Faibussowitsch {
26747d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2675c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26767d68702bSBarry Smith 
26777d68702bSBarry Smith   PetscFunctionBegin;
2678c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26799566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26805519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2681b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26829566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2683b83222d8SBarry Smith     aij->nonew = nonew;
26847d68702bSBarry Smith   }
26859566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26877d68702bSBarry Smith }
26887d68702bSBarry Smith 
2689ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2690d71ae5a4SJacob Faibussowitsch {
26913b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26923b49f96aSBarry Smith 
26933b49f96aSBarry Smith   PetscFunctionBegin;
269408401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26959566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26963b49f96aSBarry Smith   if (d) {
26973b49f96aSBarry Smith     PetscInt rstart;
26989566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
26993b49f96aSBarry Smith     *d += rstart;
27003b49f96aSBarry Smith   }
27013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27023b49f96aSBarry Smith }
27033b49f96aSBarry Smith 
2704ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2705d71ae5a4SJacob Faibussowitsch {
2706a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2707a8ee9fb5SBarry Smith 
2708a8ee9fb5SBarry Smith   PetscFunctionBegin;
27099566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2711a8ee9fb5SBarry Smith }
27123b49f96aSBarry Smith 
271358c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2714dec0b466SHong Zhang {
2715dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2716dec0b466SHong Zhang 
2717dec0b466SHong Zhang   PetscFunctionBegin;
271858c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
271958c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2721dec0b466SHong Zhang }
2722dec0b466SHong Zhang 
2723cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2724cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2725cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2726cda55fadSBarry Smith                                        MatMult_MPIAIJ,
272797304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27287c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27297c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2730f4259b30SLisandro Dalcin                                        NULL,
2731f4259b30SLisandro Dalcin                                        NULL,
2732f4259b30SLisandro Dalcin                                        NULL,
2733f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2734f4259b30SLisandro Dalcin                                        NULL,
2735f4259b30SLisandro Dalcin                                        NULL,
273641f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2737b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
273897304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2739cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2740cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2741cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2742cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
274397304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2744cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2745cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2746cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2747d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2748f4259b30SLisandro Dalcin                                        NULL,
2749f4259b30SLisandro Dalcin                                        NULL,
2750f4259b30SLisandro Dalcin                                        NULL,
2751f4259b30SLisandro Dalcin                                        NULL,
275226cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2753f4259b30SLisandro Dalcin                                        NULL,
2754f4259b30SLisandro Dalcin                                        NULL,
2755a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2756f4259b30SLisandro Dalcin                                        NULL,
2757d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2758f4259b30SLisandro Dalcin                                        NULL,
2759f4259b30SLisandro Dalcin                                        NULL,
2760f4259b30SLisandro Dalcin                                        NULL,
2761f4259b30SLisandro Dalcin                                        NULL,
2762d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27637dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2764cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2765cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2766cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2767d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2768cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27697d68702bSBarry Smith                                        MatShift_MPIAIJ,
277099e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2771564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
277273a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27738a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27748a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2775f4259b30SLisandro Dalcin                                        NULL,
2776f4259b30SLisandro Dalcin                                        NULL,
277793dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2778f4259b30SLisandro Dalcin                                        NULL,
2779cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
278072e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2781f4259b30SLisandro Dalcin                                        NULL,
27827dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2783e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2784e03a110bSBarry Smith                                        MatView_MPIAIJ,
2785f4259b30SLisandro Dalcin                                        NULL,
2786f4259b30SLisandro Dalcin                                        NULL,
27878bb0f5c6SPierre Jolivet                                        /*64*/ MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2788f4259b30SLisandro Dalcin                                        NULL,
2789f4259b30SLisandro Dalcin                                        NULL,
2790f4259b30SLisandro Dalcin                                        NULL,
27918bb0f5c6SPierre Jolivet                                        MatGetRowMaxAbs_MPIAIJ,
27928bb0f5c6SPierre Jolivet                                        /*69*/ MatGetRowMinAbs_MPIAIJ,
2793f4259b30SLisandro Dalcin                                        NULL,
2794f4259b30SLisandro Dalcin                                        NULL,
27958bb0f5c6SPierre Jolivet                                        MatFDColoringApply_AIJ,
2796b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2797f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
27988bb0f5c6SPierre Jolivet                                        /*75*/ NULL,
27998bb0f5c6SPierre Jolivet                                        NULL,
28008bb0f5c6SPierre Jolivet                                        NULL,
28018bb0f5c6SPierre Jolivet                                        MatLoad_MPIAIJ,
28028bb0f5c6SPierre Jolivet                                        NULL,
2803f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2804f4259b30SLisandro Dalcin                                        NULL,
2805f4259b30SLisandro Dalcin                                        NULL,
28068bb0f5c6SPierre Jolivet                                        /*83*/ NULL,
2807f4259b30SLisandro Dalcin                                        NULL,
280826be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
28098bb0f5c6SPierre Jolivet                                        MatPtAPNumeric_MPIAIJ_MPIAIJ,
2810f4259b30SLisandro Dalcin                                        NULL,
2811f4259b30SLisandro Dalcin                                        NULL,
28128bb0f5c6SPierre Jolivet                                        /*89*/ MatBindToCPU_MPIAIJ,
28138bb0f5c6SPierre Jolivet                                        MatProductSetFromOptions_MPIAIJ,
2814f4259b30SLisandro Dalcin                                        NULL,
2815f4259b30SLisandro Dalcin                                        NULL,
28162fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
28178bb0f5c6SPierre Jolivet                                        /*94*/ NULL,
28188bb0f5c6SPierre Jolivet                                        MatSetValuesRow_MPIAIJ,
281999cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
282069db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2821f4259b30SLisandro Dalcin                                        NULL,
28228bb0f5c6SPierre Jolivet                                        /*99*/ NULL,
2823f4259b30SLisandro Dalcin                                        NULL,
2824f4259b30SLisandro Dalcin                                        NULL,
28255494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2826f4259b30SLisandro Dalcin                                        NULL,
28278bb0f5c6SPierre Jolivet                                        /*104*/ MatMissingDiagonal_MPIAIJ,
28288bb0f5c6SPierre Jolivet                                        MatGetSeqNonzeroStructure_MPIAIJ,
2829f4259b30SLisandro Dalcin                                        NULL,
2830c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2831f4259b30SLisandro Dalcin                                        NULL,
28328bb0f5c6SPierre Jolivet                                        /*109*/ NULL,
28338bb0f5c6SPierre Jolivet                                        MatMultDiagonalBlock_MPIAIJ,
2834f4259b30SLisandro Dalcin                                        NULL,
2835f4259b30SLisandro Dalcin                                        NULL,
2836f4259b30SLisandro Dalcin                                        NULL,
28378bb0f5c6SPierre Jolivet                                        /*114*/ MatGetMultiProcBlock_MPIAIJ,
28388bb0f5c6SPierre Jolivet                                        MatFindNonzeroRows_MPIAIJ,
2839a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2840bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2841a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28428bb0f5c6SPierre Jolivet                                        /*119*/ MatCreateSubMatricesMPI_MPIAIJ,
2843f4259b30SLisandro Dalcin                                        NULL,
2844f4259b30SLisandro Dalcin                                        NULL,
2845187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2846f4259b30SLisandro Dalcin                                        NULL,
28478bb0f5c6SPierre Jolivet                                        /*124*/ NULL,
2848f4259b30SLisandro Dalcin                                        NULL,
2849f4259b30SLisandro Dalcin                                        NULL,
28508bb0f5c6SPierre Jolivet                                        MatSetBlockSizes_MPIAIJ,
2851f4259b30SLisandro Dalcin                                        NULL,
28528bb0f5c6SPierre Jolivet                                        /*129*/ MatFDColoringSetUp_MPIXAIJ,
2853a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28544222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2855f4259b30SLisandro Dalcin                                        NULL,
285672833a62Smarkadams4                                        NULL,
28578bb0f5c6SPierre Jolivet                                        /*134*/ NULL,
285872833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28592d776b49SBarry Smith                                        NULL,
2860eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
28614cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIAIJ,
28628bb0f5c6SPierre Jolivet                                        /*139*/ NULL,
286342ce410bSJunchao Zhang                                        NULL,
286442ce410bSJunchao Zhang                                        NULL,
286503db1824SAlex Lindsay                                        MatCopyHashToXAIJ_MPI_Hash,
2866c2be7ffeSStefano Zampini                                        MatGetCurrentMemType_MPIAIJ,
2867c2be7ffeSStefano Zampini                                        NULL};
286836ce4990SBarry Smith 
2869ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2870d71ae5a4SJacob Faibussowitsch {
28712e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28722e8a6d31SBarry Smith 
28732e8a6d31SBarry Smith   PetscFunctionBegin;
28749566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28759566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28772e8a6d31SBarry Smith }
28782e8a6d31SBarry Smith 
2879ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2880d71ae5a4SJacob Faibussowitsch {
28812e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28822e8a6d31SBarry Smith 
28832e8a6d31SBarry Smith   PetscFunctionBegin;
28849566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28859566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28872e8a6d31SBarry Smith }
28888a729477SBarry Smith 
2889d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2890d71ae5a4SJacob Faibussowitsch {
2891ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
28925d2a9ed1SStefano Zampini   PetscMPIInt size;
2893a23d5eceSKris Buschelman 
2894a23d5eceSKris Buschelman   PetscFunctionBegin;
2895ad79cf63SBarry Smith   if (B->hash_active) {
2896aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2897ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2898ad79cf63SBarry Smith   }
28999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2901899cda47SBarry Smith 
2902cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2903eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2904cb7b82ddSBarry Smith #else
29059566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2906cb7b82ddSBarry Smith #endif
29079566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29089566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29099566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2910cb7b82ddSBarry Smith 
29119566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2912c508b908SBarry Smith 
2913c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29149566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29159566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29169566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29179566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29189566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2919c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2920cb7b82ddSBarry Smith 
2921c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2922ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29239566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29249566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29259566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29269566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2927c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2928899cda47SBarry Smith 
29299566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2931526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2932cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
293315001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2935a23d5eceSKris Buschelman }
2936a23d5eceSKris Buschelman 
2937ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2938d71ae5a4SJacob Faibussowitsch {
2939ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
29404c51d546SAlexander   PetscBool   ondiagreset, offdiagreset, memoryreset;
2941846b4da1SFande Kong 
2942846b4da1SFande Kong   PetscFunctionBegin;
2943846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29444c51d546SAlexander   PetscCheck(B->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAssemblyEnd()");
29454c51d546SAlexander   if (B->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS);
29464c51d546SAlexander 
29474c51d546SAlexander   PetscCall(MatResetPreallocation_SeqAIJ_Private(b->A, &ondiagreset));
29484c51d546SAlexander   PetscCall(MatResetPreallocation_SeqAIJ_Private(b->B, &offdiagreset));
29494c51d546SAlexander   memoryreset = (PetscBool)(ondiagreset || offdiagreset);
29505440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &memoryreset, 1, MPI_C_BOOL, MPI_LOR, PetscObjectComm((PetscObject)B)));
29514c51d546SAlexander   if (!memoryreset) PetscFunctionReturn(PETSC_SUCCESS);
29524c51d546SAlexander 
29539566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29549566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
29554c51d546SAlexander   PetscCheck(B->assembled || B->was_assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Should not need to reset preallocation if the matrix was never assembled");
29564c51d546SAlexander   PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE));
29579566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2958846b4da1SFande Kong 
2959846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2960846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2961846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
2962b3a35320SAlex Lindsay   /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */
2963b3a35320SAlex Lindsay   PetscCall(PetscObjectStateIncrease((PetscObject)B));
29643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2965846b4da1SFande Kong }
2966846b4da1SFande Kong 
2967d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2968d71ae5a4SJacob Faibussowitsch {
2969d6dfbf8fSBarry Smith   Mat         mat;
2970416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2971d6dfbf8fSBarry Smith 
29723a40ed3dSBarry Smith   PetscFunctionBegin;
2973f4259b30SLisandro Dalcin   *newmat = NULL;
29749566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29759566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29769566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29779566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2978273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2979e1b6402fSHong Zhang 
2980d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2981501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2982e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2983d6dfbf8fSBarry Smith 
298417699dbbSLois Curfman McInnes   a->size         = oldmat->size;
298517699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2986e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2987e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2988501880eeSStefano Zampini   a->rowindices   = NULL;
2989501880eeSStefano Zampini   a->rowvalues    = NULL;
2990bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
2991d6dfbf8fSBarry Smith 
29929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
29939566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2994420957c1SBarry Smith   if (matin->hash_active) {
2995420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2996420957c1SBarry Smith   } else {
2997420957c1SBarry Smith     mat->preallocated = matin->preallocated;
29982ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
2999aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3000eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
3001b1fc9764SSatish Balay #else
30029566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
30039566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
3004b1fc9764SSatish Balay #endif
3005501880eeSStefano Zampini     } else a->colmap = NULL;
30063f41c07dSBarry Smith     if (oldmat->garray) {
3007b1d57f15SBarry Smith       PetscInt len;
3008d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30099566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30109566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3011501880eeSStefano Zampini     } else a->garray = NULL;
3012d6dfbf8fSBarry Smith 
30130de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30140de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30150de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3016aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3017cff58d65SJunchao Zhang     if (oldmat->Mvctx) {
3018cff58d65SJunchao Zhang       a->Mvctx = oldmat->Mvctx;
3019cff58d65SJunchao Zhang       PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx));
3020cff58d65SJunchao Zhang     }
30219566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30229566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3023420957c1SBarry Smith   }
30249566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30258a729477SBarry Smith   *newmat = mat;
30263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30278a729477SBarry Smith }
3028416022c9SBarry Smith 
3029d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3030d71ae5a4SJacob Faibussowitsch {
303152f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
303252f91c60SVaclav Hapla 
303352f91c60SVaclav Hapla   PetscFunctionBegin;
303452f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
303552f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3036c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30379566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30389566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30399566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
304052f91c60SVaclav Hapla   if (isbinary) {
30419566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
304252f91c60SVaclav Hapla   } else if (ishdf5) {
304352f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30449566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
304552f91c60SVaclav Hapla #else
304652f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
304752f91c60SVaclav Hapla #endif
304852f91c60SVaclav Hapla   } else {
304998921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
305052f91c60SVaclav Hapla   }
30513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
305252f91c60SVaclav Hapla }
305352f91c60SVaclav Hapla 
3054d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3055d71ae5a4SJacob Faibussowitsch {
30563ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30573ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30583ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30598fb81238SShri Abhyankar 
30608fb81238SShri Abhyankar   PetscFunctionBegin;
30619566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30628fb81238SShri Abhyankar 
30633ea6fe3dSLisandro Dalcin   /* read in matrix header */
30649566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
306508401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30669371c9d4SSatish Balay   M  = header[1];
30679371c9d4SSatish Balay   N  = header[2];
30689371c9d4SSatish Balay   nz = header[3];
306908401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
307008401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
307108401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
307208ea439dSMark F. Adams 
30733ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30749566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30753ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30763ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30773ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30799566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30808fb81238SShri Abhyankar 
30813ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30829566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3083aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30848fb81238SShri Abhyankar 
30853ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30869566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30889566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
30899371c9d4SSatish Balay   rowidxs[0] = 0;
30909371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
30911690c2aeSBarry Smith   if (nz != PETSC_INT_MAX) {
3092462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
309308401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
309438b83642SBarry Smith   }
309538b83642SBarry Smith 
30963ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
30979566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
30989566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
30999566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
31003ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
31019566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
31029566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
31039566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
31043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31058fb81238SShri Abhyankar }
31068fb81238SShri Abhyankar 
31073782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3108ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3109d71ae5a4SJacob Faibussowitsch {
31104aa3045dSJed Brown   IS          iscol_local;
3111c5e4d11fSDmitry Karpeev   PetscBool   isstride;
31129725ddffSPierre Jolivet   PetscMPIInt gisstride = 0;
31133782ecc7SHong Zhang 
31143782ecc7SHong Zhang   PetscFunctionBegin;
31153782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31169566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31173782ecc7SHong Zhang 
3118c5e4d11fSDmitry Karpeev   if (isstride) {
3119c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31209566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31219566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31229566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
31239725ddffSPierre Jolivet     if (mstart == start && mlen - mstart == len) gisstride = 1;
3124c5e4d11fSDmitry Karpeev   }
31253782ecc7SHong Zhang 
31269725ddffSPierre Jolivet   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3127c5e4d11fSDmitry Karpeev   if (gisstride) {
3128c5e4d11fSDmitry Karpeev     PetscInt N;
31299566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31309566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31319566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31329566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3133c5e4d11fSDmitry Karpeev   } else {
3134c5bfad50SMark F. Adams     PetscInt cbs;
31359566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31369566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31379566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3138b79d0421SJed Brown   }
31393782ecc7SHong Zhang 
31403782ecc7SHong Zhang   *isseq = iscol_local;
31413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3142c5e4d11fSDmitry Karpeev }
31438d2139bdSHong Zhang 
3144ddfdf956SHong Zhang /*
31459c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31469c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3147ddfdf956SHong Zhang 
3148ddfdf956SHong Zhang  Input Parameters:
314927430b45SBarry Smith +   mat - matrix
315027430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31519c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
315227430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3153ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
315427430b45SBarry Smith 
315527430b45SBarry Smith  Output Parameters:
315627430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
315727430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
315827430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
315927430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3160ddfdf956SHong Zhang  */
3161835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[])
3162d71ae5a4SJacob Faibussowitsch {
3163040216a4SHong Zhang   Vec             x, cmap;
3164040216a4SHong Zhang   const PetscInt *is_idx;
3165040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31669c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3167040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3168040216a4SHong Zhang   Mat             B    = a->B;
3169040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3170a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31718b3fa1f7SHong Zhang   MPI_Comm        comm;
31723a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31733782ecc7SHong Zhang 
31743782ecc7SHong Zhang   PetscFunctionBegin;
31759566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31769566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31778b3fa1f7SHong Zhang 
3178ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31799566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31809566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31819566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31829566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31830a351717SHong Zhang 
31849c988bcaSHong Zhang   /* Get start indices */
31859566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3186ddfdf956SHong Zhang   isstart -= ncols;
31879566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3188040216a4SHong Zhang 
31899566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
31909566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
31919566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
31929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3193ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
31948b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3195ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
31969c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
31978b3fa1f7SHong Zhang   }
31989566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
31999566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
32009566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
32018b3fa1f7SHong Zhang 
32029c988bcaSHong Zhang   /* Get iscol_d */
32039566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
32049566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
32059566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3206feb78a15SHong Zhang 
32079c988bcaSHong Zhang   /* Get isrow_d */
32089566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3209feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32119566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32129c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32139566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3214feb78a15SHong Zhang 
32159566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32169566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32179566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3218feb78a15SHong Zhang 
32199c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32209566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32219566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3222ddfdf956SHong Zhang 
32239566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
322407250d77SHong Zhang 
32259566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32269566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
322764efcef9SHong Zhang 
32289c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3229ddfdf956SHong Zhang   /* off-process column indices */
32309c988bcaSHong Zhang   count = 0;
32319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3233feb78a15SHong Zhang 
32349566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32359566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32368b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3237f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32389c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32391c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32401c645242SHong Zhang       count++;
32418b3fa1f7SHong Zhang     }
32428b3fa1f7SHong Zhang   }
32439566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32449566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
324507250d77SHong Zhang 
32469566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3247b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3248b6d9b4e0SHong Zhang 
32499566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32509c988bcaSHong Zhang   *garray = cmap1;
32519c988bcaSHong Zhang 
32529566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32539566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32549566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3256040216a4SHong Zhang }
3257040216a4SHong Zhang 
3258b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3259d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3260d71ae5a4SJacob Faibussowitsch {
3261b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32621fd43edeSHong Zhang   Mat         M = NULL;
32633b00a383SHong Zhang   MPI_Comm    comm;
3264b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32653b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3266c0c276a7Ssdargavi   PetscInt    n, count, M_size, N_size;
32673b00a383SHong Zhang 
32683b00a383SHong Zhang   PetscFunctionBegin;
32699566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32703b00a383SHong Zhang 
32713b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3272b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32739566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
327428b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32753b00a383SHong Zhang 
32769566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
327728b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32783b00a383SHong Zhang 
32799566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
328028b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32813b00a383SHong Zhang 
3282b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3283b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32849566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32859566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
328648a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32879566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32889566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
32893b00a383SHong Zhang 
32903b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
3291c0c276a7Ssdargavi     PetscInt *garray, *garray_compact;
3292b20e2604SHong Zhang     PetscInt  BsubN;
32933b00a383SHong Zhang 
3294b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
32959566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
32963b00a383SHong Zhang 
3297b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
32989566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
32999566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
33003b00a383SHong Zhang 
3301c0c276a7Ssdargavi     // Compact garray so its not of size Bn
3302c0c276a7Ssdargavi     PetscCall(ISGetSize(iscol_o, &count));
3303c0c276a7Ssdargavi     PetscCall(PetscMalloc1(count, &garray_compact));
3304c0c276a7Ssdargavi     PetscCall(PetscArraycpy(garray_compact, garray, count));
3305c0c276a7Ssdargavi 
33069c988bcaSHong Zhang     /* Create submatrix M */
3307c0c276a7Ssdargavi     PetscCall(ISGetSize(isrow, &M_size));
3308c0c276a7Ssdargavi     PetscCall(ISGetSize(iscol, &N_size));
3309c0c276a7Ssdargavi     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M));
33103b00a383SHong Zhang 
3311b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3312b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33137cfce09cSHong Zhang 
33149566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3315b20e2604SHong Zhang     n = asub->B->cmap->N;
3316b20e2604SHong Zhang     if (BsubN > n) {
3317c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33187cfce09cSHong Zhang       const PetscInt *idx;
33199c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33209566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33217cfce09cSHong Zhang 
33229566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33237cfce09cSHong Zhang       j = 0;
33249566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3325b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33267cfce09cSHong Zhang         if (j >= BsubN) break;
33279c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33287cfce09cSHong Zhang 
3329966bd95aSPierre Jolivet         PetscCheck(subgarray[i] == garray[j], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33307cfce09cSHong Zhang         idx_new[i] = idx[j++];
33317cfce09cSHong Zhang       }
33329566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33337cfce09cSHong Zhang 
33349566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33359566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33367cfce09cSHong Zhang 
3337966bd95aSPierre Jolivet     } else PetscCheck(BsubN >= n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
33387cfce09cSHong Zhang 
33399566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3340b20e2604SHong Zhang     *submat = M;
33413b00a383SHong Zhang 
3342e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33439566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33449566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33453b00a383SHong Zhang 
33469566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33479566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33483b00a383SHong Zhang 
33499566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33509566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33513b00a383SHong Zhang   }
33523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33533b00a383SHong Zhang }
33543b00a383SHong Zhang 
3355d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3356d71ae5a4SJacob Faibussowitsch {
33571358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33583782ecc7SHong Zhang   PetscInt  csize;
335918e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33604a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33613782ecc7SHong Zhang   MPI_Comm  comm;
33623782ecc7SHong Zhang 
33633782ecc7SHong Zhang   PetscFunctionBegin;
3364bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3365a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33668f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33679566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3368d5761cdaSHong Zhang     if (isrow_d) {
3369d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3370d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3371d5761cdaSHong Zhang     } else {
33729566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3373d5761cdaSHong Zhang       if (iscol_local) {
3374d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3375d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3376d5761cdaSHong Zhang       }
3377d5761cdaSHong Zhang     }
33788f69fa7bSHong Zhang   } else {
3379e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
338018e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33819566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33823782ecc7SHong Zhang     if (!n) {
338318e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33843782ecc7SHong Zhang     } else {
33859566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33869566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3387ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33888f69fa7bSHong Zhang     }
33893782ecc7SHong Zhang 
3390e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
339118e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33929566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
339318e627e3SHong Zhang     if (!n) {
339418e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
339518e627e3SHong Zhang     } else {
33969566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
33979566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
339818e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
339918e627e3SHong Zhang     }
340018e627e3SHong Zhang 
34019566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
34025440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPI_C_BOOL, MPI_LAND, comm));
340318e627e3SHong Zhang     sameRowDist = tsameDist[0];
340418e627e3SHong Zhang   }
340518e627e3SHong Zhang 
340618e627e3SHong Zhang   if (sameRowDist) {
3407b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
34083b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
34099566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34103ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3411b20e2604SHong Zhang     } else { /* sameRowDist */
34123b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34131358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34141358a193SHong Zhang         PetscBool sorted;
34159566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34169566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34179566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
341808401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34191358a193SHong Zhang 
34209566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34211358a193SHong Zhang         if (sorted) {
34221358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34239566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34243ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34253782ecc7SHong Zhang         }
34261358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
342748c0d076SHong Zhang         IS iscol_sub;
34289566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
342948c0d076SHong Zhang         if (iscol_sub) {
34309566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34313ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
343248c0d076SHong Zhang         }
34331358a193SHong Zhang       }
34341358a193SHong Zhang     }
34351358a193SHong Zhang   }
34363782ecc7SHong Zhang 
3437bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34383782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34399566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
344028b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34413782ecc7SHong Zhang   } else {
344248a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34431358a193SHong Zhang   }
34443782ecc7SHong Zhang 
34459566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34469566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34478f69fa7bSHong Zhang 
3448b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34499566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34509566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3451b79d0421SJed Brown   }
34523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34534aa3045dSJed Brown }
34544aa3045dSJed Brown 
3455feb78a15SHong Zhang /*@C
345611a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3457feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3458feb78a15SHong Zhang 
3459d083f849SBarry Smith   Collective
3460feb78a15SHong Zhang 
3461feb78a15SHong Zhang   Input Parameters:
3462feb78a15SHong Zhang + comm   - MPI communicator
3463c0c276a7Ssdargavi . M      - the global row size
3464c0c276a7Ssdargavi . N      - the global column size
3465feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3466c0c276a7Ssdargavi . B      - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray
3467a3156c1cSJunchao Zhang - garray - either `NULL` or the global index of `B` columns. If not `NULL`, it should be allocated by `PetscMalloc1()` and will be owned by `mat` thereafter.
3468feb78a15SHong Zhang 
3469feb78a15SHong Zhang   Output Parameter:
34702ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
347127430b45SBarry Smith 
3472feb78a15SHong Zhang   Level: advanced
3473feb78a15SHong Zhang 
3474feb78a15SHong Zhang   Notes:
347511a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
347611a5261eSBarry Smith 
3477c0c276a7Ssdargavi   `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore.
3478feb78a15SHong Zhang 
3479a3156c1cSJunchao Zhang   If `garray` is `NULL`, `B` will be compacted to use local indices. In this sense, `B`'s sparsity pattern (nonzerostate) will be changed. If `B` is a device matrix, we need to somehow also update
3480a3156c1cSJunchao Zhang   `B`'s copy on device.  We do so by increasing `B`'s nonzerostate. In use of `B` on device, device matrix types should detect this change (ref. internal routines `MatSeqAIJCUSPARSECopyToGPU()` or
3481a3156c1cSJunchao Zhang   `MatAssemblyEnd_SeqAIJKokkos()`) and will just destroy and then recreate the device copy of `B`. It is not optimal, but is easy to implement and less hacky. To avoid this overhead, try to compute `garray`
3482a3156c1cSJunchao Zhang   yourself, see algorithms in the private function `MatSetUpMultiply_MPIAIJ()`.
3483a3156c1cSJunchao Zhang 
3484b1dff882SJunchao Zhang   The `NULL`-ness of `garray` doesn't need to be collective, in other words, `garray` can be `NULL` on some processes while not on others.
3485b1dff882SJunchao Zhang 
34861cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3487feb78a15SHong Zhang @*/
3488c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat)
3489d71ae5a4SJacob Faibussowitsch {
3490c0c276a7Ssdargavi   PetscInt    m, n;
34914ab4d6f4SRichard Tran Mills   MatType     mpi_mat_type;
3492f18d1d10SJunchao Zhang   Mat_MPIAIJ *mpiaij;
3493f18d1d10SJunchao Zhang   Mat         C;
3494feb78a15SHong Zhang 
3495feb78a15SHong Zhang   PetscFunctionBegin;
3496f18d1d10SJunchao Zhang   PetscCall(MatCreate(comm, &C));
34979566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
349808401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
349958b7e2c1SStefano Zampini   PetscCheck(A->rmap->bs == B->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3500feb78a15SHong Zhang 
3501f18d1d10SJunchao Zhang   PetscCall(MatSetSizes(C, m, n, M, N));
35024ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
35034ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
3504f18d1d10SJunchao Zhang   PetscCall(MatSetType(C, mpi_mat_type));
3505a3156c1cSJunchao Zhang   if (!garray) {
3506a3156c1cSJunchao Zhang     const PetscScalar *ba;
3507a3156c1cSJunchao Zhang 
3508a3156c1cSJunchao Zhang     B->nonzerostate++;
3509a3156c1cSJunchao Zhang     PetscCall(MatSeqAIJGetArrayRead(B, &ba)); /* Since we will destroy B's device copy, we need to make sure the host copy is up to date */
3510a3156c1cSJunchao Zhang     PetscCall(MatSeqAIJRestoreArrayRead(B, &ba));
3511a3156c1cSJunchao Zhang   }
35124ab4d6f4SRichard Tran Mills 
3513f18d1d10SJunchao Zhang   PetscCall(MatSetBlockSizes(C, A->rmap->bs, A->cmap->bs));
3514f18d1d10SJunchao Zhang   PetscCall(PetscLayoutSetUp(C->rmap));
3515f18d1d10SJunchao Zhang   PetscCall(PetscLayoutSetUp(C->cmap));
3516feb78a15SHong Zhang 
3517f18d1d10SJunchao Zhang   mpiaij              = (Mat_MPIAIJ *)C->data;
3518c0c276a7Ssdargavi   mpiaij->A           = A;
3519c0c276a7Ssdargavi   mpiaij->B           = B;
3520c0c276a7Ssdargavi   mpiaij->garray      = garray;
3521f18d1d10SJunchao Zhang   C->preallocated     = PETSC_TRUE;
3522f18d1d10SJunchao Zhang   C->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */
3523c0c276a7Ssdargavi 
3524f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3525f18d1d10SJunchao Zhang   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3526c0c276a7Ssdargavi   /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and
3527c0c276a7Ssdargavi    also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced
3528c0c276a7Ssdargavi    */
3529f18d1d10SJunchao Zhang   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3530f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
3531f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
3532f18d1d10SJunchao Zhang   *mat = C;
35333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3534feb78a15SHong Zhang }
3535feb78a15SHong Zhang 
3536ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35374aa3045dSJed Brown 
3538d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3539d71ae5a4SJacob Faibussowitsch {
354098b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
354185f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
354298b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35431fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
354498b658c4SHong Zhang   MatScalar      *aa;
354500e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3546a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
354798b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
354898b658c4SHong Zhang   IS              iscol_sub, iscmap;
354998b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
355018e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3551a31a438cSHong Zhang   MPI_Comm        comm;
35527e2c5f70SBarry Smith 
3553a0ff6018SBarry Smith   PetscFunctionBegin;
35549566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3555d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35569566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
355728b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35589566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3559d5761cdaSHong Zhang 
35609566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
356128b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3562d5761cdaSHong Zhang 
35639566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
356428b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3565d5761cdaSHong Zhang 
35669566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3567d5761cdaSHong Zhang 
3568d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35693b00a383SHong Zhang     PetscBool flg;
35703b00a383SHong Zhang 
35719566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35729566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3573bcae8d28SHong Zhang 
35743b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3575366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35769566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3577366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
35785440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3579366a327dSHong Zhang     if (allcolumns) {
3580366a327dSHong Zhang       iscol_sub = iscol_local;
35819566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35829566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3583366a327dSHong Zhang 
35843b00a383SHong Zhang     } else {
35851358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3586244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35879566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
35889566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
35899566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
35908d2139bdSHong Zhang       count = 0;
3591a31a438cSHong Zhang       k     = 0;
3592a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3593a31a438cSHong Zhang         j = is_idx[i];
3594a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3595a31a438cSHong Zhang           /* diagonal part of mat */
35968d2139bdSHong Zhang           idx[count]     = j;
3597366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
35984a3daf6eSHong Zhang         } else if (Bn) {
3599a31a438cSHong Zhang           /* off-diagonal part of mat */
3600a31a438cSHong Zhang           if (j == garray[k]) {
36018d2139bdSHong Zhang             idx[count]     = j;
3602a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3603a31a438cSHong Zhang           } else if (j > garray[k]) {
3604a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3605a31a438cSHong Zhang             if (j == garray[k]) {
3606a31a438cSHong Zhang               idx[count]     = j;
3607a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36088d2139bdSHong Zhang             }
36098d2139bdSHong Zhang           }
36108d2139bdSHong Zhang         }
36118d2139bdSHong Zhang       }
36129566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36138d2139bdSHong Zhang 
36149566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36159566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36169566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3617b6d9b4e0SHong Zhang 
36189566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3619a31a438cSHong Zhang     }
36208b3fa1f7SHong Zhang 
36213b00a383SHong Zhang     /* (3) Create sequential Msub */
36229566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3623d5761cdaSHong Zhang   }
36248d2139bdSHong Zhang 
36259566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
362657508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Msub->data;
362798b658c4SHong Zhang   ii  = aij->i;
36289566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3629a0ff6018SBarry Smith 
3630a0ff6018SBarry Smith   /*
3631a0ff6018SBarry Smith       m - number of local rows
3632a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3633a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3634a0ff6018SBarry Smith   */
36359566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
363698b658c4SHong Zhang 
36373b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36383b00a383SHong Zhang     /* (4) Create parallel newmat */
363998b658c4SHong Zhang     PetscMPIInt rank, size;
3640bcae8d28SHong Zhang     PetscInt    csize;
364198b658c4SHong Zhang 
36429566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36439566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
364400e6dbe6SBarry Smith 
3645a0ff6018SBarry Smith     /*
364600e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
364700e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3648a0ff6018SBarry Smith     */
364900e6dbe6SBarry Smith 
365000e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36519566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36526a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36539566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3654a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3655e2c4fddaSBarry Smith         nlocal = m;
36566a6a5d1dSBarry Smith       } else {
3657a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3658ab50ec6bSBarry Smith       }
3659ab50ec6bSBarry Smith     } else {
36606a6a5d1dSBarry Smith       nlocal = csize;
36616a6a5d1dSBarry Smith     }
36629566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
366300e6dbe6SBarry Smith     rstart = rend - nlocal;
3664aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
366500e6dbe6SBarry Smith 
366600e6dbe6SBarry Smith     /* next, compute all the lengths */
366798b658c4SHong Zhang     jj = aij->j;
36689566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
366900e6dbe6SBarry Smith     olens = dlens + m;
367000e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
367100e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
367200e6dbe6SBarry Smith       olen = 0;
367300e6dbe6SBarry Smith       dlen = 0;
367400e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
367515b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
367600e6dbe6SBarry Smith         else dlen++;
367700e6dbe6SBarry Smith         jj++;
367800e6dbe6SBarry Smith       }
367900e6dbe6SBarry Smith       olens[i] = olen;
368000e6dbe6SBarry Smith       dlens[i] = dlen;
368100e6dbe6SBarry Smith     }
3682b6d9b4e0SHong Zhang 
36839566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36849566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
368598b658c4SHong Zhang 
36869566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36879566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
36889566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
36899566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
36909566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
36919566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3692d5761cdaSHong Zhang 
3693d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3694a0ff6018SBarry Smith     M = *newmat;
36959566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
369608401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
36979566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3698c48de900SBarry Smith     /*
3699c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3700c48de900SBarry Smith        rather than the slower MatSetValues().
3701c48de900SBarry Smith     */
3702c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3703c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3704a0ff6018SBarry Smith   }
3705548ecf4dSHong Zhang 
37063b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37089566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
370998b658c4SHong Zhang 
371098b658c4SHong Zhang   jj = aij->j;
37119566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3712a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3713a0ff6018SBarry Smith     row = rstart + i;
371400e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
371515b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37169566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37179371c9d4SSatish Balay     jj += nz;
37189371c9d4SSatish Balay     aa += nz;
3719a0ff6018SBarry Smith   }
37209566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37219566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3722a0ff6018SBarry Smith 
37239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3725fee21e36SBarry Smith 
37269566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
372798b658c4SHong Zhang 
372898b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3729fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37303b00a383SHong Zhang     *newmat = M;
3731f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37329566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
373398b658c4SHong Zhang 
3734f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37359566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
373698b658c4SHong Zhang 
3737f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37389566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3739bcae8d28SHong Zhang 
3740bcae8d28SHong Zhang     if (iscol_local) {
3741f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37429566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3743bcae8d28SHong Zhang     }
374498b658c4SHong Zhang   }
37453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3746a0ff6018SBarry Smith }
3747273d9f13SBarry Smith 
3748df40acb1SHong Zhang /*
3749df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3750df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3751df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3752df40acb1SHong Zhang 
375311a5261eSBarry Smith   This requires a sequential iscol with all indices.
3754df40acb1SHong Zhang */
3755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3756d71ae5a4SJacob Faibussowitsch {
3757df40acb1SHong Zhang   PetscMPIInt rank, size;
3758df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3759df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3760df40acb1SHong Zhang   Mat         M, Mreuse;
376198b658c4SHong Zhang   MatScalar  *aa, *vwork;
3762df40acb1SHong Zhang   MPI_Comm    comm;
3763df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37640b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3765df40acb1SHong Zhang 
3766df40acb1SHong Zhang   PetscFunctionBegin;
37679566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37689566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37699566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3770df40acb1SHong Zhang 
37710b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37729566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37739566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37740b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
37755440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37760b27a90eSHong Zhang 
3777df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37789566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
377928b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37809566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3781df40acb1SHong Zhang   } else {
37829566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3783df40acb1SHong Zhang   }
3784df40acb1SHong Zhang 
3785df40acb1SHong Zhang   /*
3786df40acb1SHong Zhang       m - number of local rows
3787df40acb1SHong Zhang       n - number of columns (same on all processors)
3788df40acb1SHong Zhang       rstart - first row in new global matrix generated
3789df40acb1SHong Zhang   */
37909566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
37919566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3792df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
379357508eceSPierre Jolivet     aij = (Mat_SeqAIJ *)Mreuse->data;
3794df40acb1SHong Zhang     ii  = aij->i;
3795df40acb1SHong Zhang     jj  = aij->j;
3796df40acb1SHong Zhang 
3797df40acb1SHong Zhang     /*
3798df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3799df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3800df40acb1SHong Zhang     */
3801df40acb1SHong Zhang 
3802df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3803df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38049566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3805df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3806df40acb1SHong Zhang         nlocal = m;
3807df40acb1SHong Zhang       } else {
3808df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3809df40acb1SHong Zhang       }
3810df40acb1SHong Zhang     } else {
3811df40acb1SHong Zhang       nlocal = csize;
3812df40acb1SHong Zhang     }
38139566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3814df40acb1SHong Zhang     rstart = rend - nlocal;
3815aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3816df40acb1SHong Zhang 
3817df40acb1SHong Zhang     /* next, compute all the lengths */
38189566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3819df40acb1SHong Zhang     olens = dlens + m;
3820df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3821df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3822df40acb1SHong Zhang       olen = 0;
3823df40acb1SHong Zhang       dlen = 0;
3824df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3825df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3826df40acb1SHong Zhang         else dlen++;
3827df40acb1SHong Zhang         jj++;
3828df40acb1SHong Zhang       }
3829df40acb1SHong Zhang       olens[i] = olen;
3830df40acb1SHong Zhang       dlens[i] = dlen;
3831df40acb1SHong Zhang     }
38329566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38339566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38349566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38359566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38369566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38379566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3838df40acb1SHong Zhang   } else {
3839df40acb1SHong Zhang     PetscInt ml, nl;
3840df40acb1SHong Zhang 
3841df40acb1SHong Zhang     M = *newmat;
38429566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
384308401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38449566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3845df40acb1SHong Zhang     /*
3846df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3847df40acb1SHong Zhang        rather than the slower MatSetValues().
3848df40acb1SHong Zhang     */
3849df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3850df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3851df40acb1SHong Zhang   }
38529566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
385357508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Mreuse->data;
3854df40acb1SHong Zhang   ii  = aij->i;
3855df40acb1SHong Zhang   jj  = aij->j;
38562e5835c6SStefano Zampini 
38572e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38589566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3859df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3860df40acb1SHong Zhang     row   = rstart + i;
3861df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38629371c9d4SSatish Balay     cwork = jj;
38638e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38649371c9d4SSatish Balay     vwork = aa;
38658e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38669566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3867df40acb1SHong Zhang   }
38689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3869df40acb1SHong Zhang 
38709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3872df40acb1SHong Zhang   *newmat = M;
3873df40acb1SHong Zhang 
3874df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3875df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38769566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38779566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3878df40acb1SHong Zhang   }
38793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3880df40acb1SHong Zhang }
3881df40acb1SHong Zhang 
3882ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3883d71ae5a4SJacob Faibussowitsch {
38846a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
38859f0612e4SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart;
3886ccd8e176SBarry Smith   const PetscInt *JJ;
3887eeb24464SBarry Smith   PetscBool       nooffprocentries;
38886a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3889ccd8e176SBarry Smith 
3890ccd8e176SBarry Smith   PetscFunctionBegin;
38919566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
38929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3893d0f46423SBarry Smith   m       = B->rmap->n;
3894d0f46423SBarry Smith   cstart  = B->cmap->rstart;
3895d0f46423SBarry Smith   cend    = B->cmap->rend;
3896d0f46423SBarry Smith   rstart  = B->rmap->rstart;
38979f0612e4SBarry Smith   irstart = Ii[0];
3898899cda47SBarry Smith 
38999566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3900ccd8e176SBarry Smith 
390176bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39028f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3903ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39049f0612e4SBarry Smith       JJ  = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
390508401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
390608401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
390708401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3908ecc77c7aSBarry Smith     }
390976bd3646SJed Brown   }
3910ecc77c7aSBarry Smith 
39118f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3912b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39139f0612e4SBarry Smith     JJ      = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
3914ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3915ccd8e176SBarry Smith     d       = 0;
39160daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39170daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3918ccd8e176SBarry Smith     }
3919ccd8e176SBarry Smith     d_nnz[i] = d;
3920ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3921ccd8e176SBarry Smith   }
39229566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39239566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3924ccd8e176SBarry Smith 
39258f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3926ccd8e176SBarry Smith     ii = i + rstart;
39279f0612e4SBarry Smith     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES));
3928ccd8e176SBarry Smith   }
3929eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3930eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39319566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39329566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3933eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3934ccd8e176SBarry Smith 
39356a3d2595SBarry Smith   /* count number of entries below block diagonal */
39366a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39376a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39386a3d2595SBarry Smith   Aij->ld = ld;
39396a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39406a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39416a3d2595SBarry Smith     j   = 0;
3942ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39436a3d2595SBarry Smith     ld[i] = j;
3944720a2405SPierre Jolivet     if (J) J += nnz;
39456a3d2595SBarry Smith   }
39466a3d2595SBarry Smith 
39479566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3949ccd8e176SBarry Smith }
3950ccd8e176SBarry Smith 
39511eea217eSSatish Balay /*@
395211a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3953ccd8e176SBarry Smith   (the default parallel PETSc format).
3954ccd8e176SBarry Smith 
3955d083f849SBarry Smith   Collective
3956ccd8e176SBarry Smith 
3957ccd8e176SBarry Smith   Input Parameters:
3958a1661176SMatthew Knepley + B - the matrix
3959d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
3960d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
3961ccd8e176SBarry Smith - v - optional values in the matrix
3962ccd8e176SBarry Smith 
3963ccd8e176SBarry Smith   Level: developer
3964ccd8e176SBarry Smith 
396512251496SSatish Balay   Notes:
39662ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39672ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
396811a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
396912251496SSatish Balay 
39702ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
397112251496SSatish Balay 
3972a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3973a4bd8bc0SBarry Smith 
3974a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3975a4bd8bc0SBarry Smith 
3976a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3977a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3978a4bd8bc0SBarry Smith 
397912251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
398012251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3981c5e4d11fSDmitry Karpeev   as shown
398227430b45SBarry Smith .vb
398327430b45SBarry Smith         1 0 0
398427430b45SBarry Smith         2 0 3     P0
398527430b45SBarry Smith        -------
398627430b45SBarry Smith         4 5 6     P1
398727430b45SBarry Smith 
398827430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
398927430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
399027430b45SBarry Smith         j =  {0,0,2}  [size = 3]
399127430b45SBarry Smith         v =  {1,2,3}  [size = 3]
399227430b45SBarry Smith 
399327430b45SBarry Smith      Process1 [P1] rows_owned=[2]
399427430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
399527430b45SBarry Smith         j =  {0,1,2}  [size = 3]
399627430b45SBarry Smith         v =  {4,5,6}  [size = 3]
399727430b45SBarry Smith .ve
399812251496SSatish Balay 
3999fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4000a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4001ccd8e176SBarry Smith @*/
4002d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4003d71ae5a4SJacob Faibussowitsch {
4004ccd8e176SBarry Smith   PetscFunctionBegin;
4005cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4007ccd8e176SBarry Smith }
4008ccd8e176SBarry Smith 
40095d83a8b1SBarry Smith /*@
401011a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4011273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4012273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
401320f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4014273d9f13SBarry Smith 
4015d083f849SBarry Smith   Collective
4016273d9f13SBarry Smith 
4017273d9f13SBarry Smith   Input Parameters:
40181c4f3114SJed Brown + B     - the matrix
4019273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4020273d9f13SBarry Smith            (same value is used for all local rows)
4021273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4022273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40232ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4024273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40253287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40263287b5eaSJed Brown            the diagonal entry even if it is zero.
4027273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4028273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4029273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4030273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40312ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4032273d9f13SBarry Smith            structure. The size of this array is equal to the number
4033273d9f13SBarry Smith            of local rows, i.e 'm'.
4034273d9f13SBarry Smith 
40352920cce0SJacob Faibussowitsch   Example Usage:
403627430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
403727430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
403827430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
403927430b45SBarry Smith   as follows
404027430b45SBarry Smith 
404127430b45SBarry Smith .vb
404227430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
404327430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
404427430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
404527430b45SBarry Smith     -------------------------------------
404627430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
404727430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
404827430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
404927430b45SBarry Smith     -------------------------------------
405027430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
405127430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
405227430b45SBarry Smith .ve
405327430b45SBarry Smith 
405427430b45SBarry Smith   This can be represented as a collection of submatrices as
405527430b45SBarry Smith .vb
405627430b45SBarry Smith       A B C
405727430b45SBarry Smith       D E F
405827430b45SBarry Smith       G H I
405927430b45SBarry Smith .ve
406027430b45SBarry Smith 
406127430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
406227430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
406327430b45SBarry Smith 
406427430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
406527430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
406627430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
406727430b45SBarry Smith 
406827430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
406927430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
407027430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
407127430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
407227430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
40735163b989SNuno Nobre   matrix, and [DF] as another `MATSEQAIJ` matrix.
407427430b45SBarry Smith 
407520f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
40765163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
40775163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
40785163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
40795163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
408020f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
408127430b45SBarry Smith .vb
408227430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
408327430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
408427430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
408527430b45SBarry Smith .ve
408620f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
408727430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
408827430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
408927430b45SBarry Smith   34 values.
409027430b45SBarry Smith 
409120f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
409227430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
409320f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
409427430b45SBarry Smith .vb
409527430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
409627430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
409727430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
409827430b45SBarry Smith .ve
409927430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
410027430b45SBarry Smith   hence pre-allocation is perfect.
410127430b45SBarry Smith 
410227430b45SBarry Smith   Level: intermediate
410327430b45SBarry Smith 
410427430b45SBarry Smith   Notes:
410549a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
410649a6f317SBarry Smith 
410727430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41080598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4109651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4110273d9f13SBarry Smith 
4111273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4112273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4113273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4114273d9f13SBarry Smith 
4115273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4116a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4117a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4118a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4119a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4120a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4121a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4122a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4123a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4124273d9f13SBarry Smith 
41252ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4126273d9f13SBarry Smith 
412727430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4128aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
412927430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4130aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4131aa95bbe8SBarry Smith 
41321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4133a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4134273d9f13SBarry Smith @*/
4135d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4136d71ae5a4SJacob Faibussowitsch {
4137273d9f13SBarry Smith   PetscFunctionBegin;
41386ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41396ba663aaSJed Brown   PetscValidType(B, 1);
4140cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4142273d9f13SBarry Smith }
4143273d9f13SBarry Smith 
414458d36128SBarry Smith /*@
414511a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41468f8f2f0dSBarry Smith   CSR format for the local rows.
41472fb0ec9aSBarry Smith 
4148d083f849SBarry Smith   Collective
41492fb0ec9aSBarry Smith 
41502fb0ec9aSBarry Smith   Input Parameters:
41512fb0ec9aSBarry Smith + comm - MPI communicator
415211a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41532fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4154d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4155d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4156d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4157d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41585693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41595693b835SJunchao Zhang . j    - global column indices
4160f1f2ae84SBarry Smith - a    - optional matrix values
41612fb0ec9aSBarry Smith 
41622fb0ec9aSBarry Smith   Output Parameter:
41632fb0ec9aSBarry Smith . mat - the matrix
416403bfb495SBarry Smith 
41652fb0ec9aSBarry Smith   Level: intermediate
41662fb0ec9aSBarry Smith 
41672fb0ec9aSBarry Smith   Notes:
41682ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
4169d4c8cc39SPierre Jolivet   thus you CANNOT change the matrix entries by changing the values of `a[]` after you have
4170d4c8cc39SPierre Jolivet   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41712fb0ec9aSBarry Smith 
41722ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
417312251496SSatish Balay 
41745693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4175a4bd8bc0SBarry Smith 
41765693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4177a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4178a4bd8bc0SBarry Smith 
417912251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
4180d4c8cc39SPierre Jolivet   row-major ordering, i.e., for the following matrix, the input data expected is
4181c5e4d11fSDmitry Karpeev   as shown
41822ef1f0ffSBarry Smith .vb
41832ef1f0ffSBarry Smith         1 0 0
41842ef1f0ffSBarry Smith         2 0 3     P0
41852ef1f0ffSBarry Smith        -------
41862ef1f0ffSBarry Smith         4 5 6     P1
41878f8f2f0dSBarry Smith 
41882ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
41892ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
41902ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
41912ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
41922fb0ec9aSBarry Smith 
41932ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
41942ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
41952ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
41962ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
41972ef1f0ffSBarry Smith .ve
41982ef1f0ffSBarry Smith 
4199d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
42005693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42012fb0ec9aSBarry Smith @*/
4202d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4203d71ae5a4SJacob Faibussowitsch {
42042fb0ec9aSBarry Smith   PetscFunctionBegin;
420508401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
420608401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42079566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42089566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42099566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42109566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42119566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42132fb0ec9aSBarry Smith }
42142fb0ec9aSBarry Smith 
42158f8f2f0dSBarry Smith /*@
421611a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42172ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42182ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42196a3d2595SBarry Smith 
42206a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42218f8f2f0dSBarry Smith 
42228f8f2f0dSBarry Smith   Collective
42238f8f2f0dSBarry Smith 
42248f8f2f0dSBarry Smith   Input Parameters:
42258f8f2f0dSBarry Smith + mat - the matrix
422611a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42278f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
422811a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42298f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
423011a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
423111a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42328f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42338f8f2f0dSBarry Smith . J   - column indices
42348f8f2f0dSBarry Smith - v   - matrix values
42358f8f2f0dSBarry Smith 
42362ef1f0ffSBarry Smith   Level: deprecated
42378f8f2f0dSBarry Smith 
42381cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4239a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42408f8f2f0dSBarry Smith @*/
4241d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4242d71ae5a4SJacob Faibussowitsch {
42436a3d2595SBarry Smith   PetscInt        nnz, i;
42448f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42458f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4246fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4247fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42488f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42496a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42506a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42518f8f2f0dSBarry Smith 
42528f8f2f0dSBarry Smith   PetscFunctionBegin;
4253aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
425408401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
425508401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
425608401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42578f8f2f0dSBarry Smith 
42589566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42599566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42608f8f2f0dSBarry Smith 
42618f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42624c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42634c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42644c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42654c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42664c17f1ccSBarry Smith       }
42674c17f1ccSBarry Smith     }
42688f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42698f8f2f0dSBarry Smith     Iii = Ii[i];
42708f8f2f0dSBarry Smith     ldi = ld[i];
42718f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42729566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42739566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42749566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42758f8f2f0dSBarry Smith     ad += md;
42768f8f2f0dSBarry Smith     ao += nnz - md;
42778f8f2f0dSBarry Smith   }
42788f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42798f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42809566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42819566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42829566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42839566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42849566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42859566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42869566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
42878f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
42883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42898f8f2f0dSBarry Smith }
42908f8f2f0dSBarry Smith 
42916a3d2595SBarry Smith /*@
429211a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
42936a3d2595SBarry Smith 
42946a3d2595SBarry Smith   Collective
42956a3d2595SBarry Smith 
42966a3d2595SBarry Smith   Input Parameters:
42976a3d2595SBarry Smith + mat - the matrix
42986a3d2595SBarry Smith - v   - matrix values, stored by row
42996a3d2595SBarry Smith 
43006a3d2595SBarry Smith   Level: intermediate
43016a3d2595SBarry Smith 
4302a4bd8bc0SBarry Smith   Notes:
43036a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43046a3d2595SBarry Smith 
4305a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4306a4bd8bc0SBarry Smith 
43071cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4308a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43096a3d2595SBarry Smith @*/
4310d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4311d71ae5a4SJacob Faibussowitsch {
43126a3d2595SBarry Smith   PetscInt        nnz, i, m;
43136a3d2595SBarry Smith   PetscBool       nooffprocentries;
43146a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43156a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43166a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43176a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43186a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43196a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43206a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43216a3d2595SBarry Smith 
43226a3d2595SBarry Smith   PetscFunctionBegin;
43236a3d2595SBarry Smith   m = mat->rmap->n;
43246a3d2595SBarry Smith 
43256a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43266a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43276a3d2595SBarry Smith   Iii = 0;
43286a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43296a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43306a3d2595SBarry Smith     ldi = ld[i];
43316a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43326a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43336a3d2595SBarry Smith     ad += md;
4334810441c8SPierre Jolivet     if (ao) {
4335810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4336810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43376a3d2595SBarry Smith       ao += nnz - md;
4338810441c8SPierre Jolivet     }
43396a3d2595SBarry Smith     Iii += nnz;
43406a3d2595SBarry Smith   }
43416a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43426a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43436a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43446a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43456a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43466a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43476a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43486a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43496a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43506a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43526a3d2595SBarry Smith }
43536a3d2595SBarry Smith 
43545d83a8b1SBarry Smith /*@
435511a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4356273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4357273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43582ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4359273d9f13SBarry Smith 
4360d083f849SBarry Smith   Collective
4361273d9f13SBarry Smith 
4362273d9f13SBarry Smith   Input Parameters:
4363273d9f13SBarry Smith + comm  - MPI communicator
436411a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4365273d9f13SBarry Smith           This value should be the same as the local size used in creating the
4366273d9f13SBarry Smith           y vector for the matrix-vector product y = Ax.
4367273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
436845f401ebSJose E. Roman           x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4369273d9f13SBarry Smith           calculated if N is given) For square matrices n is almost always m.
437011a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
437111a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4372273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4373273d9f13SBarry Smith           (same value is used for all local rows)
4374273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4375273d9f13SBarry Smith           DIAGONAL portion of the local submatrix (possibly different for each row)
43762ef1f0ffSBarry Smith           or `NULL`, if `d_nz` is used to specify the nonzero structure.
4377273d9f13SBarry Smith           The size of this array is equal to the number of local rows, i.e 'm'.
4378273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4379273d9f13SBarry Smith           submatrix (same value is used for all local rows).
4380273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4381273d9f13SBarry Smith           OFF-DIAGONAL portion of the local submatrix (possibly different for
43822ef1f0ffSBarry Smith           each row) or `NULL`, if `o_nz` is used to specify the nonzero
4383273d9f13SBarry Smith           structure. The size of this array is equal to the number
4384273d9f13SBarry Smith           of local rows, i.e 'm'.
4385273d9f13SBarry Smith 
4386273d9f13SBarry Smith   Output Parameter:
4387273d9f13SBarry Smith . A - the matrix
4388273d9f13SBarry Smith 
438927430b45SBarry Smith   Options Database Keys:
439027430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
439127430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
439227430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
4393727bdf9bSBarry Smith                                       See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter`
4394727bdf9bSBarry Smith                                       to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
439527430b45SBarry Smith 
43962ef1f0ffSBarry Smith   Level: intermediate
43972ef1f0ffSBarry Smith 
439827430b45SBarry Smith   Notes:
439977433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4400f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
440111a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4402175b88e8SBarry Smith 
440349a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
440449a6f317SBarry Smith 
44052ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44062ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4407273d9f13SBarry Smith   storage requirements for this matrix.
4408273d9f13SBarry Smith 
440911a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4410273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4411273d9f13SBarry Smith   that argument.
4412273d9f13SBarry Smith 
4413727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
4414727bdf9bSBarry Smith   `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
4415727bdf9bSBarry Smith 
4416273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4417273d9f13SBarry Smith   (possibly both).
4418273d9f13SBarry Smith 
441933a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
4420727bdf9bSBarry Smith   first `m0` rows belong to process 0, the next `m1` rows belong to
4421727bdf9bSBarry Smith   process 1, the next `m2` rows belong to process 2, etc., where
4422727bdf9bSBarry Smith   `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores
442333a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4424273d9f13SBarry Smith 
442533a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
442633a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4427df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
442833a7c187SSatish Balay 
442933a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
443033a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
443133a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
443233a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
443333a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
443433a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
44350b4b7b1cSBarry Smith   illustrates this concept. The two matrices, the DIAGONAL portion and
44360b4b7b1cSBarry Smith   the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices.
443733a7c187SSatish Balay 
443833a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
443933a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
444033a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
444133a7c187SSatish Balay   local matrix (a rectangular submatrix).
4442273d9f13SBarry Smith 
44432ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4444273d9f13SBarry Smith 
444597d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44462ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4447da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4448da57b5cdSKarl Rupp .vb
44492ef1f0ffSBarry Smith   MatCreate(..., &A);
44502ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44512ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44522ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4453da57b5cdSKarl Rupp .ve
445497d05335SKris Buschelman 
4455273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4456273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4457273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4458273d9f13SBarry Smith 
44592920cce0SJacob Faibussowitsch   Example Usage:
4460273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4461273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4462273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4463efc377ccSKarl Rupp   as follows
4464273d9f13SBarry Smith 
4465273d9f13SBarry Smith .vb
4466273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4467273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4468273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4469273d9f13SBarry Smith     -------------------------------------
4470273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4471273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4472273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4473273d9f13SBarry Smith     -------------------------------------
4474273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4475273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4476273d9f13SBarry Smith .ve
4477273d9f13SBarry Smith 
4478da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4479273d9f13SBarry Smith 
4480273d9f13SBarry Smith .vb
4481273d9f13SBarry Smith       A B C
4482273d9f13SBarry Smith       D E F
4483273d9f13SBarry Smith       G H I
4484273d9f13SBarry Smith .ve
4485273d9f13SBarry Smith 
4486273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4487273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4488273d9f13SBarry Smith 
4489273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4490273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4491273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4492273d9f13SBarry Smith 
4493273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4494273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4495273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4496273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
449727430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
44985163b989SNuno Nobre   matrix, and [DF] as another SeqAIJ matrix.
4499273d9f13SBarry Smith 
45002ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45015163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
45025163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
45035163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
45045163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45052ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4506273d9f13SBarry Smith .vb
450727430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
450827430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
450927430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4510273d9f13SBarry Smith .ve
45112ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4512273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4513273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4514273d9f13SBarry Smith   34 values.
4515273d9f13SBarry Smith 
45162ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4517a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4518da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4519273d9f13SBarry Smith .vb
452027430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
452127430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
452227430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4523273d9f13SBarry Smith .ve
4524273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4525273d9f13SBarry Smith   hence pre-allocation is perfect.
4526273d9f13SBarry Smith 
45271cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4528727bdf9bSBarry Smith           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`,
4529727bdf9bSBarry Smith           `MatGetOwnershipRangesColumn()`, `PetscLayout`
4530273d9f13SBarry Smith @*/
4531d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4532d71ae5a4SJacob Faibussowitsch {
4533b1d57f15SBarry Smith   PetscMPIInt size;
4534273d9f13SBarry Smith 
4535273d9f13SBarry Smith   PetscFunctionBegin;
45369566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45379566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45389566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4539273d9f13SBarry Smith   if (size > 1) {
45409566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45419566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4542273d9f13SBarry Smith   } else {
45439566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45449566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4545273d9f13SBarry Smith   }
45463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4547273d9f13SBarry Smith }
4548195d93cdSBarry Smith 
4549127ca0efSMatthew Knepley /*@C
45500ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4551127ca0efSMatthew Knepley 
45522ef1f0ffSBarry Smith   Not Collective
4553127ca0efSMatthew Knepley 
4554127ca0efSMatthew Knepley   Input Parameter:
455511a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4556127ca0efSMatthew Knepley 
4557127ca0efSMatthew Knepley   Output Parameters:
455811a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
455911a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
45602ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4561127ca0efSMatthew Knepley 
45620ab4885dSBarry Smith   Level: intermediate
45630ab4885dSBarry Smith 
456411a5261eSBarry Smith   Note:
45652ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
45662ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
45672ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4568127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4569127ca0efSMatthew Knepley 
4570ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4571127ca0efSMatthew Knepley @*/
4572d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4573d71ae5a4SJacob Faibussowitsch {
4574195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
457504cf37c7SBarry Smith   PetscBool   flg;
4576b1d57f15SBarry Smith 
4577195d93cdSBarry Smith   PetscFunctionBegin;
45789566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
457928b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
458021e72a00SBarry Smith   if (Ad) *Ad = a->A;
458121e72a00SBarry Smith   if (Ao) *Ao = a->B;
458221e72a00SBarry Smith   if (colmap) *colmap = a->garray;
45833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4584195d93cdSBarry Smith }
4585a2243be0SBarry Smith 
4586d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4587d71ae5a4SJacob Faibussowitsch {
4588110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
45899b8102ccSHong Zhang   PetscInt    *indx;
4590110bb6e1SHong Zhang   PetscScalar *values;
4591421ddf4dSJunchao Zhang   MatType      rootType;
45929b8102ccSHong Zhang 
45939b8102ccSHong Zhang   PetscFunctionBegin;
45949566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4595110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4596110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4597110bb6e1SHong Zhang 
459848a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4599a22543b6SHong Zhang     /* Check sum(n) = N */
4600462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
460108401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4602a22543b6SHong Zhang 
46039566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46049b8102ccSHong Zhang     rstart -= m;
46059b8102ccSHong Zhang 
4606d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46079b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46089566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46099566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46109566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46119b8102ccSHong Zhang     }
46129b8102ccSHong Zhang 
46139566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46149566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46159566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46169566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46179566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46189566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46209566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4621d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46229566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46239b8102ccSHong Zhang   }
46249b8102ccSHong Zhang 
4625110bb6e1SHong Zhang   /* numeric phase */
46269566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46279b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46289566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46299b8102ccSHong Zhang     Ii = i + rstart;
46309566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46319566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46329b8102ccSHong Zhang   }
46339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4636c5d6d63eSBarry Smith }
4637c5d6d63eSBarry Smith 
463849abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data)
4639d71ae5a4SJacob Faibussowitsch {
464049abdd8aSBarry Smith   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data;
464151a7d1a8SHong Zhang 
464251a7d1a8SHong Zhang   PetscFunctionBegin;
46433ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
46449566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
46459566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
46469566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
46479566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
46489566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
46499566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
46509566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
46519566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
46529566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
46539566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
46549566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
46559566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
46569566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
46579566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
46583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
465951a7d1a8SHong Zhang }
466051a7d1a8SHong Zhang 
4661c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4662c6db04a5SJed Brown #include <petscbt.h>
46634ebed01fSBarry Smith 
4664d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4665d71ae5a4SJacob Faibussowitsch {
4666ce94432eSBarry Smith   MPI_Comm             comm;
466755d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4668b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
46696497c311SBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m;
46706497c311SBarry Smith   PetscMPIInt          proc, k;
4671b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
46726497c311SBarry Smith   PetscInt             anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4673b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
467455d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
467555d1abb9SHong Zhang   MPI_Status          *status;
4676fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4677dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
467855d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4679776b82aeSLisandro Dalcin   PetscContainer       container;
468055d1abb9SHong Zhang 
468155d1abb9SHong Zhang   PetscFunctionBegin;
46829566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
46839566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
46843c2c1871SHong Zhang 
46859566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
46869566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
468755d1abb9SHong Zhang 
46889566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
468928b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
46909566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
46919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4692fff043a9SJunchao Zhang   aa = a_a;
4693bf0cc555SLisandro Dalcin 
469455d1abb9SHong Zhang   bi     = merge->bi;
469555d1abb9SHong Zhang   bj     = merge->bj;
469655d1abb9SHong Zhang   buf_ri = merge->buf_ri;
469755d1abb9SHong Zhang   buf_rj = merge->buf_rj;
469855d1abb9SHong Zhang 
46999566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47007a2fc3feSBarry Smith   owners = merge->rowmap->range;
470155d1abb9SHong Zhang   len_s  = merge->len_s;
470255d1abb9SHong Zhang 
470355d1abb9SHong Zhang   /* send and recv matrix values */
47049566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47059566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
470655d1abb9SHong Zhang 
47079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
470855d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
470955d1abb9SHong Zhang     if (!len_s[proc]) continue;
471055d1abb9SHong Zhang     i = owners[proc];
47116497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
471255d1abb9SHong Zhang     k++;
471355d1abb9SHong Zhang   }
471455d1abb9SHong Zhang 
47159566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47169566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47179566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
471855d1abb9SHong Zhang 
47199566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47209566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
472155d1abb9SHong Zhang 
472255d1abb9SHong Zhang   /* insert mat values of mpimat */
47239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
472555d1abb9SHong Zhang 
472655d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
472755d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4728f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
472955d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4730a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
473155d1abb9SHong Zhang   }
473255d1abb9SHong Zhang 
473355d1abb9SHong Zhang   /* set values of ba */
47347a2fc3feSBarry Smith   m = merge->rowmap->n;
473555d1abb9SHong Zhang   for (i = 0; i < m; i++) {
473655d1abb9SHong Zhang     arow = owners[rank] + i;
473755d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
473855d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47399566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
474055d1abb9SHong Zhang 
474155d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
474255d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
474355d1abb9SHong Zhang     aj     = a->j + ai[arow];
4744fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
474555d1abb9SHong Zhang     nextaj = 0;
474655d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
474755d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
474855d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
474955d1abb9SHong Zhang       }
475055d1abb9SHong Zhang     }
475155d1abb9SHong Zhang 
475255d1abb9SHong Zhang     /* add received vals into ba */
475355d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
475455d1abb9SHong Zhang       /* i-th row */
475555d1abb9SHong Zhang       if (i == *nextrow[k]) {
475655d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4757f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4758f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
475955d1abb9SHong Zhang         nextaj = 0;
476055d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
476155d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
476255d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
476355d1abb9SHong Zhang           }
476455d1abb9SHong Zhang         }
47659371c9d4SSatish Balay         nextrow[k]++;
47669371c9d4SSatish Balay         nextai[k]++;
476755d1abb9SHong Zhang       }
476855d1abb9SHong Zhang     }
47699566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
477055d1abb9SHong Zhang   }
47719566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
47729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
47739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
477455d1abb9SHong Zhang 
47759566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
47769566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
47779566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
47789566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
47799566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
47803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
478155d1abb9SHong Zhang }
478238f152feSBarry Smith 
4783d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4784d71ae5a4SJacob Faibussowitsch {
478555a3bba9SHong Zhang   Mat                  B_mpi;
4786c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4787b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4788b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4789d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
47906497c311SBarry Smith   PetscInt             len, *dnz, *onz, bs, cbs;
4791c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4792b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
479355d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
479458cb9c82SHong Zhang   MPI_Status          *status;
47950298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4796be0fcf8dSHong Zhang   PetscBT              lnkbt;
479751a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4798776b82aeSLisandro Dalcin   PetscContainer       container;
479902c68681SHong Zhang 
4800e5f2cdd8SHong Zhang   PetscFunctionBegin;
48019566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48023c2c1871SHong Zhang 
480338f152feSBarry Smith   /* make sure it is a PETSc comm */
48049566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48069566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
480755d1abb9SHong Zhang 
48089566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4810e5f2cdd8SHong Zhang 
48116abd8857SHong Zhang   /* determine row ownership */
48129566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48139566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48149566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48159566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48169566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
481955d1abb9SHong Zhang 
48207a2fc3feSBarry Smith   m      = merge->rowmap->n;
48217a2fc3feSBarry Smith   owners = merge->rowmap->range;
48226abd8857SHong Zhang 
48236abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48243e06a4e6SHong Zhang   len_s = merge->len_s;
482551a7d1a8SHong Zhang 
48262257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4827c2234fe3SHong Zhang   merge->nsend = 0;
48286497c311SBarry Smith   for (PetscMPIInt proc = 0; proc < size; proc++) {
48292257cef7SHong Zhang     len_si[proc] = 0;
48303e06a4e6SHong Zhang     if (proc == rank) {
48316abd8857SHong Zhang       len_s[proc] = 0;
48323e06a4e6SHong Zhang     } else {
48336497c311SBarry Smith       PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc]));
48346497c311SBarry Smith       PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */
48353e06a4e6SHong Zhang     }
48363e06a4e6SHong Zhang     if (len_s[proc]) {
4837c2234fe3SHong Zhang       merge->nsend++;
48382257cef7SHong Zhang       nrows = 0;
48392257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48402257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48412257cef7SHong Zhang       }
48426497c311SBarry Smith       PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc]));
48432257cef7SHong Zhang       len += len_si[proc];
4844409913e3SHong Zhang     }
484558cb9c82SHong Zhang   }
4846409913e3SHong Zhang 
48472257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
48489566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
48499566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4850671beff6SHong Zhang 
48513e06a4e6SHong Zhang   /* post the Irecv of j-structure */
48529566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
48539566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
485402c68681SHong Zhang 
48553e06a4e6SHong Zhang   /* post the Isend of j-structure */
48569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
48573e06a4e6SHong Zhang 
48586497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
4859409913e3SHong Zhang     if (!len_s[proc]) continue;
486002c68681SHong Zhang     i = owners[proc];
48616497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
486251a7d1a8SHong Zhang     k++;
486351a7d1a8SHong Zhang   }
486451a7d1a8SHong Zhang 
48653e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
48669566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
48679566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
486802c68681SHong Zhang 
486902c68681SHong Zhang   /* send and recv i-structure */
48709566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
48719566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
487202c68681SHong Zhang 
48739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
48743e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
48756497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
487602c68681SHong Zhang     if (!len_s[proc]) continue;
48773e06a4e6SHong Zhang     /* form outgoing message for i-structure:
48783e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
48793e06a4e6SHong Zhang                [1:nrows]:           row index (global)
48803e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
48813e06a4e6SHong Zhang     */
48822257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
48833e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
48843e06a4e6SHong Zhang     buf_si[0]   = nrows;
48853e06a4e6SHong Zhang     buf_si_i[0] = 0;
48863e06a4e6SHong Zhang     nrows       = 0;
48873e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
48883e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
48893e06a4e6SHong Zhang       if (anzi) {
48903e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
48913e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
48923e06a4e6SHong Zhang         nrows++;
48933e06a4e6SHong Zhang       }
48943e06a4e6SHong Zhang     }
48956497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
489602c68681SHong Zhang     k++;
48972257cef7SHong Zhang     buf_si += len_si[proc];
489802c68681SHong Zhang   }
48992257cef7SHong Zhang 
49009566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49019566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
490202c68681SHong Zhang 
49039566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
490448a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49053e06a4e6SHong Zhang 
49069566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49079566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49089566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49099566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49109566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49119566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49129566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
491358cb9c82SHong Zhang 
4914bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
491558cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
491758cb9c82SHong Zhang   bi[0] = 0;
491858cb9c82SHong Zhang 
4919be0fcf8dSHong Zhang   /* create and initialize a linked list */
4920be0fcf8dSHong Zhang   nlnk = N + 1;
49219566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
492258cb9c82SHong Zhang 
4923bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4924bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49259566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49262205254eSKarl Rupp 
492758cb9c82SHong Zhang   current_space = free_space;
492858cb9c82SHong Zhang 
4929bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49311d79065fSBarry Smith 
49323e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49332257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49343e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49353e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4936a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49373e06a4e6SHong Zhang   }
49382257cef7SHong Zhang 
4939d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4940bcc1bcd5SHong Zhang   len = 0;
494158cb9c82SHong Zhang   for (i = 0; i < m; i++) {
494258cb9c82SHong Zhang     bnzi = 0;
494358cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
494458cb9c82SHong Zhang     arow = owners[rank] + i;
494558cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
494658cb9c82SHong Zhang     aj   = a->j + ai[arow];
49479566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
494858cb9c82SHong Zhang     bnzi += nlnk;
494958cb9c82SHong Zhang     /* add received col data into lnk */
495051a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
495155d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
49523e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
49533e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
49549566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
49553e06a4e6SHong Zhang         bnzi += nlnk;
49569371c9d4SSatish Balay         nextrow[k]++;
49579371c9d4SSatish Balay         nextai[k]++;
49583e06a4e6SHong Zhang       }
495958cb9c82SHong Zhang     }
4960bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
496158cb9c82SHong Zhang 
496258cb9c82SHong Zhang     /* if free space is not available, make more free space */
496348a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
496458cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
49659566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
49669566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
4967bcc1bcd5SHong Zhang 
496858cb9c82SHong Zhang     current_space->array += bnzi;
496958cb9c82SHong Zhang     current_space->local_used += bnzi;
497058cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
497158cb9c82SHong Zhang 
497258cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
497358cb9c82SHong Zhang   }
4974bcc1bcd5SHong Zhang 
49759566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
4976bcc1bcd5SHong Zhang 
49779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
49789566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
49799566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
4980409913e3SHong Zhang 
4981bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
49829566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
49839566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
498454b84b50SHong Zhang   if (n == PETSC_DECIDE) {
49859566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
498654b84b50SHong Zhang   } else {
49879566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
498854b84b50SHong Zhang   }
49899566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
49909566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
49919566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
4992d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
49939566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
499458cb9c82SHong Zhang 
499590431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
49966abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
4997affca5deSHong Zhang   merge->bi        = bi;
4998affca5deSHong Zhang   merge->bj        = bj;
499902c68681SHong Zhang   merge->buf_ri    = buf_ri;
500002c68681SHong Zhang   merge->buf_rj    = buf_rj;
50010298fd71SBarry Smith   merge->coi       = NULL;
50020298fd71SBarry Smith   merge->coj       = NULL;
50030298fd71SBarry Smith   merge->owners_co = NULL;
5004affca5deSHong Zhang 
50059566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5006bf0cc555SLisandro Dalcin 
5007affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50089566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50099566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
501049abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50119566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50129566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5013affca5deSHong Zhang   *mpimat = B_mpi;
501438f152feSBarry Smith 
50159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5017e5f2cdd8SHong Zhang }
501825616d81SHong Zhang 
5019cc4c1da9SBarry Smith /*@
502011a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5021d4036a1aSHong Zhang   matrices from each processor
5022d4036a1aSHong Zhang 
5023d083f849SBarry Smith   Collective
5024d4036a1aSHong Zhang 
5025d4036a1aSHong Zhang   Input Parameters:
5026d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5027d4036a1aSHong Zhang . seqmat - the input sequential matrices
502811a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
502911a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
503011a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5031d4036a1aSHong Zhang 
5032d4036a1aSHong Zhang   Output Parameter:
5033d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5034d4036a1aSHong Zhang 
5035d4036a1aSHong Zhang   Level: advanced
5036d4036a1aSHong Zhang 
503711a5261eSBarry Smith   Note:
5038d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5039d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
5040b6971eaeSBarry Smith   destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`.
50412ef1f0ffSBarry Smith 
50421cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5043d4036a1aSHong Zhang @*/
5044d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5045d71ae5a4SJacob Faibussowitsch {
50467e63b356SHong Zhang   PetscMPIInt size;
504755d1abb9SHong Zhang 
504855d1abb9SHong Zhang   PetscFunctionBegin;
50499566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
50507e63b356SHong Zhang   if (size == 1) {
50519566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
50527e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
50539566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
50547e63b356SHong Zhang     } else {
50559566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
50567e63b356SHong Zhang     }
50579566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
50583ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
50597e63b356SHong Zhang   }
50609566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
506148a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
50629566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
50639566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
50643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
506555d1abb9SHong Zhang }
50664ebed01fSBarry Smith 
5067bc08b0f1SBarry Smith /*@
50682920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
50698a9c020eSBarry Smith 
50708a9c020eSBarry Smith   Not Collective
50718a9c020eSBarry Smith 
50722fe279fdSBarry Smith   Input Parameter:
507320f4b53cSBarry Smith . A - the matrix
50748a9c020eSBarry Smith 
50758a9c020eSBarry Smith   Output Parameter:
50768a9c020eSBarry Smith . A_loc - the local sequential matrix generated
50778a9c020eSBarry Smith 
50788a9c020eSBarry Smith   Level: developer
50798a9c020eSBarry Smith 
50808a9c020eSBarry Smith   Notes:
50812920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
50822920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
50832920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
50842920cce0SJacob Faibussowitsch 
508511a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
50868a9c020eSBarry Smith 
50872920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
50882920cce0SJacob Faibussowitsch 
508911a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
50908a9c020eSBarry Smith 
50911cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
50928a9c020eSBarry Smith @*/
5093d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5094d71ae5a4SJacob Faibussowitsch {
50958a9c020eSBarry Smith   PetscBool mpi;
50968a9c020eSBarry Smith 
50978a9c020eSBarry Smith   PetscFunctionBegin;
50988a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
50998a9c020eSBarry Smith   if (mpi) {
51008a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51018a9c020eSBarry Smith   } else {
51028a9c020eSBarry Smith     *A_loc = A;
51038a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51048a9c020eSBarry Smith   }
51053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51068a9c020eSBarry Smith }
51078a9c020eSBarry Smith 
51088a9c020eSBarry Smith /*@
51092920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
511025616d81SHong Zhang 
511132fba14fSHong Zhang   Not Collective
511225616d81SHong Zhang 
511325616d81SHong Zhang   Input Parameters:
511425616d81SHong Zhang + A     - the matrix
511511a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
511625616d81SHong Zhang 
511725616d81SHong Zhang   Output Parameter:
511825616d81SHong Zhang . A_loc - the local sequential matrix generated
511925616d81SHong Zhang 
512025616d81SHong Zhang   Level: developer
512125616d81SHong Zhang 
512277c65a98SStefano Zampini   Notes:
51232920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51242920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51252920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51262920cce0SJacob Faibussowitsch 
512711a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51288a9c020eSBarry Smith 
51292920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51302920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51312920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51322920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
513377c65a98SStefano Zampini 
51341cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
513525616d81SHong Zhang @*/
5136d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5137d71ae5a4SJacob Faibussowitsch {
513801b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5139b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5140b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5141ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5142ce496241SStefano Zampini   PetscScalar       *ca, *cam;
514377c65a98SStefano Zampini   PetscMPIInt        size;
5144d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
51455a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
51468661ff28SBarry Smith   PetscBool          match;
514725616d81SHong Zhang 
514825616d81SHong Zhang   PetscFunctionBegin;
51499566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
515028b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
51519566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
515277c65a98SStefano Zampini   if (size == 1) {
515377c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
51549566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
515577c65a98SStefano Zampini       *A_loc = mpimat->A;
515677c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
51579566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
515877c65a98SStefano Zampini     }
51593ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
516077c65a98SStefano Zampini   }
516170a9ba44SHong Zhang 
51629566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5163f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5164f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
51659371c9d4SSatish Balay   ai = a->i;
51669371c9d4SSatish Balay   aj = a->j;
51679371c9d4SSatish Balay   bi = b->i;
51689371c9d4SSatish Balay   bj = b->j;
51699566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
51709566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5171ce496241SStefano Zampini   aa = aav;
5172ce496241SStefano Zampini   ba = bav;
517301b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
51749566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5175dea91ad1SHong Zhang     ci[0] = 0;
5176ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
51779566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
51789566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5179dea91ad1SHong Zhang     k = 0;
518001b7ae99SHong Zhang     for (i = 0; i < am; i++) {
51815a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
51825a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
518301b7ae99SHong Zhang       /* off-diagonal portion of A */
51845a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
51855a7d977cSHong Zhang         col = cmap[*bj];
51865a7d977cSHong Zhang         if (col >= cstart) break;
51879371c9d4SSatish Balay         cj[k] = col;
51889371c9d4SSatish Balay         bj++;
51895a7d977cSHong Zhang         ca[k++] = *ba++;
51905a7d977cSHong Zhang       }
51915a7d977cSHong Zhang       /* diagonal portion of A */
51925a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
51935a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
51945a7d977cSHong Zhang         ca[k++] = *aa++;
51955a7d977cSHong Zhang       }
51965a7d977cSHong Zhang       /* off-diagonal portion of A */
51975a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
51985a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
51995a7d977cSHong Zhang         ca[k++] = *ba++;
52005a7d977cSHong Zhang       }
520125616d81SHong Zhang     }
5202dea91ad1SHong Zhang     /* put together the new matrix */
52039566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5204dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5205dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5206dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5207e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5208e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5209dea91ad1SHong Zhang     mat->nonew   = 0;
52105a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52115a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5212fff043a9SJunchao Zhang     ci  = mat->i;
5213fff043a9SJunchao Zhang     cj  = mat->j;
52149566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52155a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52165a7d977cSHong Zhang       /* off-diagonal portion of A */
52175a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52185a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52195a7d977cSHong Zhang         col = cmap[*bj];
52205a7d977cSHong Zhang         if (col >= cstart) break;
52219371c9d4SSatish Balay         *cam++ = *ba++;
52229371c9d4SSatish Balay         bj++;
52235a7d977cSHong Zhang       }
52245a7d977cSHong Zhang       /* diagonal portion of A */
5225ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5226a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52275a7d977cSHong Zhang       /* off-diagonal portion of A */
5228f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52299371c9d4SSatish Balay         *cam++ = *ba++;
52309371c9d4SSatish Balay         bj++;
5231f33d1a9aSHong Zhang       }
52325a7d977cSHong Zhang     }
52339566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
523498921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52359566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52369566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52379566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
523925616d81SHong Zhang }
524025616d81SHong Zhang 
5241ed502f03SStefano Zampini /*@
524211a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52434cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5244ed502f03SStefano Zampini 
5245ed502f03SStefano Zampini   Not Collective
5246ed502f03SStefano Zampini 
5247ed502f03SStefano Zampini   Input Parameters:
5248ed502f03SStefano Zampini + A     - the matrix
524911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5250ed502f03SStefano Zampini 
5251d8d19677SJose E. Roman   Output Parameters:
52522ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5253ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5254ed502f03SStefano Zampini 
5255ed502f03SStefano Zampini   Level: developer
5256ed502f03SStefano Zampini 
525711a5261eSBarry Smith   Note:
52582ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
52594cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5260ed502f03SStefano Zampini 
52611cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5262ed502f03SStefano Zampini @*/
5263d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5264d71ae5a4SJacob Faibussowitsch {
5265ed502f03SStefano Zampini   Mat             Ao, Ad;
5266ed502f03SStefano Zampini   const PetscInt *cmap;
5267ed502f03SStefano Zampini   PetscMPIInt     size;
5268ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5269ed502f03SStefano Zampini 
5270ed502f03SStefano Zampini   PetscFunctionBegin;
52719566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
52729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5273ed502f03SStefano Zampini   if (size == 1) {
5274ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52759566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5276ed502f03SStefano Zampini       *A_loc = Ad;
5277ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52789566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5279ed502f03SStefano Zampini     }
52809566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
52813ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5282ed502f03SStefano Zampini   }
52839566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
52849566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5285ed502f03SStefano Zampini   if (f) {
52869566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5287ed502f03SStefano Zampini   } else {
5288ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5289ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5290ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5291ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5292ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5293ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5294ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5295ed502f03SStefano Zampini     PetscScalar       *ca;
5296ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5297ed502f03SStefano Zampini 
52989566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
52999566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53009566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53019566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5302ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5303ed502f03SStefano Zampini       PetscInt k;
53049566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53059566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53069566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5307ed502f03SStefano Zampini       ci[0] = 0;
5308ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5309ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5310ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5311ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5312ed502f03SStefano Zampini         /* diagonal portion of A */
5313ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5314ed502f03SStefano Zampini           cj[k] = *aj++;
5315ed502f03SStefano Zampini           ca[k] = *aa++;
5316ed502f03SStefano Zampini         }
5317ed502f03SStefano Zampini         /* off-diagonal portion of A */
5318ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5319ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5320ed502f03SStefano Zampini           ca[k] = *ba++;
5321ed502f03SStefano Zampini         }
5322ed502f03SStefano Zampini       }
5323ed502f03SStefano Zampini       /* put together the new matrix */
53249566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5325ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5326ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5327ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5328ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5329ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5330ed502f03SStefano Zampini       c->nonew   = 0;
53319566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5332ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53339566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5334ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5335ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5336ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5337ed502f03SStefano Zampini         /* diagonal portion of A */
5338ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5339ed502f03SStefano Zampini         /* off-diagonal portion of A */
5340ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5341ed502f03SStefano Zampini       }
53429566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
534398921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53449566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
53459566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5346ed502f03SStefano Zampini     if (glob) {
5347ed502f03SStefano Zampini       PetscInt cst, *gidx;
5348ed502f03SStefano Zampini 
53499566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
53509566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5351ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5352ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
53539566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5354ed502f03SStefano Zampini     }
5355ed502f03SStefano Zampini   }
53569566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
53573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5358ed502f03SStefano Zampini }
5359ed502f03SStefano Zampini 
536032fba14fSHong Zhang /*@C
536111a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
536232fba14fSHong Zhang 
536332fba14fSHong Zhang   Not Collective
536432fba14fSHong Zhang 
536532fba14fSHong Zhang   Input Parameters:
536632fba14fSHong Zhang + A     - the matrix
536711a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
536820f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
536920f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
537032fba14fSHong Zhang 
537132fba14fSHong Zhang   Output Parameter:
537232fba14fSHong Zhang . A_loc - the local sequential matrix generated
537332fba14fSHong Zhang 
537432fba14fSHong Zhang   Level: developer
537532fba14fSHong Zhang 
53761cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
537732fba14fSHong Zhang @*/
5378d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5379d71ae5a4SJacob Faibussowitsch {
538032fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
538132fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
538232fba14fSHong Zhang   IS          isrowa, iscola;
538332fba14fSHong Zhang   Mat        *aloc;
53844a2b5492SBarry Smith   PetscBool   match;
538532fba14fSHong Zhang 
538632fba14fSHong Zhang   PetscFunctionBegin;
53879566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
538828b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
53899566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
539032fba14fSHong Zhang   if (!row) {
53919371c9d4SSatish Balay     start = A->rmap->rstart;
53929371c9d4SSatish Balay     end   = A->rmap->rend;
53939566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
539432fba14fSHong Zhang   } else {
539532fba14fSHong Zhang     isrowa = *row;
539632fba14fSHong Zhang   }
539732fba14fSHong Zhang   if (!col) {
5398d0f46423SBarry Smith     start = A->cmap->rstart;
539932fba14fSHong Zhang     cmap  = a->garray;
5400d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5401d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54029566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
540332fba14fSHong Zhang     ncols = 0;
540432fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
540532fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
540632fba14fSHong Zhang       else break;
540732fba14fSHong Zhang     }
540832fba14fSHong Zhang     imark = i;
540932fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
541032fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54119566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
541232fba14fSHong Zhang   } else {
541332fba14fSHong Zhang     iscola = *col;
541432fba14fSHong Zhang   }
541532fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54169566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
541732fba14fSHong Zhang     aloc[0] = *A_loc;
541832fba14fSHong Zhang   }
54199566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5420109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54219566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5422109e0772SStefano Zampini   }
542332fba14fSHong Zhang   *A_loc = aloc[0];
54249566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
542548a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
542648a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54279566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
542932fba14fSHong Zhang }
543032fba14fSHong Zhang 
54315c65b9ecSFande Kong /*
54325c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54335c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54345c65b9ecSFande Kong  * on a global size.
54355c65b9ecSFande Kong  * */
5436ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5437d71ae5a4SJacob Faibussowitsch {
54385c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5439f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5440131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5441131c27b5Sprj-   PetscMPIInt            owner;
54425c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54435c65b9ecSFande Kong   const PetscInt        *lrowindices;
54445c65b9ecSFande Kong   PetscSF                sf, osf;
54455c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
54465c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
54475c65b9ecSFande Kong   MPI_Comm               comm;
54485c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5449fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
54505c65b9ecSFande Kong 
54515c65b9ecSFande Kong   PetscFunctionBegin;
54529566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
54535c65b9ecSFande Kong   /* plocalsize is the number of roots
54545c65b9ecSFande Kong    * nrows is the number of leaves
54555c65b9ecSFande Kong    * */
54569566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
54579566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
54589566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
54599566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
54605c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
54615c65b9ecSFande Kong     /* Find a remote index and an owner for a row
54625c65b9ecSFande Kong      * The row could be local or remote
54635c65b9ecSFande Kong      * */
546434bcad68SFande Kong     owner = 0;
546534bcad68SFande Kong     lidx  = 0;
54669566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
54675c65b9ecSFande Kong     iremote[i].index = lidx;
54685c65b9ecSFande Kong     iremote[i].rank  = owner;
54695c65b9ecSFande Kong   }
54705c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
54719566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5472f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
54735c65b9ecSFande Kong    * offsets
54745c65b9ecSFande Kong    * */
54759566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
54769566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
54779566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5478bc8e477aSFande Kong 
54799566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
54809566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
54819566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
54825c65b9ecSFande Kong   roffsets[0] = 0;
54835c65b9ecSFande Kong   roffsets[1] = 0;
54845c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
54854cf0e950SBarry Smith     /* diagonal */
54865c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
54874cf0e950SBarry Smith     /* off-diagonal */
54885c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
54895c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
54905c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
54915c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
54925c65b9ecSFande Kong   }
54939566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
54949566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
54955c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
54969566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
54979566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
54989566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
54999566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55009566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55019566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55029566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55035c65b9ecSFande Kong   dntotalcols = 0;
55045c65b9ecSFande Kong   ontotalcols = 0;
5505bc8e477aSFande Kong   ncol        = 0;
55065c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55075c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5508bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55094cf0e950SBarry Smith     /* diagonal */
55105c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55114cf0e950SBarry Smith     /* off-diagonal */
55125c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55135c65b9ecSFande Kong   }
55145c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55155c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55165c65b9ecSFande Kong    * */
55179566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55189566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55199566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55205c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55214cf0e950SBarry Smith   /* diagonal */
55229566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55234cf0e950SBarry Smith   /* off-diagonal */
55249566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55254cf0e950SBarry Smith   /* diagonal */
55269566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55274cf0e950SBarry Smith   /* off-diagonal */
55289566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55295c65b9ecSFande Kong   dntotalcols = 0;
55305c65b9ecSFande Kong   ontotalcols = 0;
55315c65b9ecSFande Kong   ntotalcols  = 0;
55325c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
553334bcad68SFande Kong     owner = 0;
55349566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55355c65b9ecSFande Kong     /* Set iremote for diag matrix */
55365c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55375c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55385c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55395c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55405c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55415c65b9ecSFande Kong     }
55424cf0e950SBarry Smith     /* off-diagonal */
55435c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
55445c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
55455c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
55465c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
55475c65b9ecSFande Kong     }
55485c65b9ecSFande Kong   }
55499566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
55509566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
55519566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
55529566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
55535c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
55545c65b9ecSFande Kong    * Diag matrix
55555c65b9ecSFande Kong    * */
55569566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55579566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55589566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
55595c65b9ecSFande Kong 
55609566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
55614cf0e950SBarry Smith   /* off-diagonal */
55629566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
55639566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
55649566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
55659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
55669566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
55674cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
55689566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
55699566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
55709566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
55715c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
55725c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
55739566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
55745c65b9ecSFande Kong   /* We want P_oth store global indices */
55759566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
55765c65b9ecSFande Kong   /* Use memory scalable approach */
55779566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
55789566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
55799566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
55809566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
55815c65b9ecSFande Kong   /* Convert back to local indices */
55825c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
55839566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
55845c65b9ecSFande Kong   nout = 0;
55859566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
558608401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
55879566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
55885c65b9ecSFande Kong   /* Exchange values */
55899566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
55909566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
55919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
55929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
55935c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
55945c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
55959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
55969566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
55975c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
55989566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
55999566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56009566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56019566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56035c65b9ecSFande Kong }
56045c65b9ecSFande Kong 
56055c65b9ecSFande Kong /*
56065c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56075c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56085c65b9ecSFande Kong  * */
5609d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5610d71ae5a4SJacob Faibussowitsch {
56115c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5612bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5613bc8e477aSFande Kong   IS          rows, map;
5614bc8e477aSFande Kong   PetscHMapI  hamp;
5615bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56165c65b9ecSFande Kong   MPI_Comm    comm;
56175c65b9ecSFande Kong   PetscSF     sf, osf;
5618bc8e477aSFande Kong   PetscBool   has;
56195c65b9ecSFande Kong 
56205c65b9ecSFande Kong   PetscFunctionBegin;
56219566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56229566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56235c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56245c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56255c65b9ecSFande Kong    * */
56265c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56275c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5628eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56299566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5630bc8e477aSFande Kong     count = 0;
5631bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5632bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5633bc8e477aSFande Kong       key = a->garray[i] / dof;
56349566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5635bc8e477aSFande Kong       if (!has) {
5636bc8e477aSFande Kong         mapping[i] = count;
56379566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5638bc8e477aSFande Kong       } else {
5639bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5640bc8e477aSFande Kong         mapping[i] = count - 1;
56415c65b9ecSFande Kong       }
5642bc8e477aSFande Kong     }
56439566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
56449566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5645eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
56469566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
56475c65b9ecSFande Kong     off = 0;
56489566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
56499566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
56509566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
56519566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
56525c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
56539566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
56549566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
56559566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
56569566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
56579566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
56585c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
56595c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
566035cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5661fff043a9SJunchao Zhang      */
5662fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5663fff043a9SJunchao Zhang 
56649566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
56659566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
566608401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
56675c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
56685c65b9ecSFande Kong     /* Update values in place */
56699566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56709566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56719566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56729566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56739566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56749566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56759566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56769566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56776718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
56789566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
56793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56805c65b9ecSFande Kong }
56815c65b9ecSFande Kong 
568225616d81SHong Zhang /*@C
568320f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
568425616d81SHong Zhang 
5685c3339decSBarry Smith   Collective
568625616d81SHong Zhang 
568725616d81SHong Zhang   Input Parameters:
568811a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
568911a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
569011a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
569125616d81SHong Zhang 
5692f1a722f8SMatthew G. Knepley   Output Parameters:
569327430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
569427430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5695f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
569625616d81SHong Zhang 
569725616d81SHong Zhang   Level: developer
569825616d81SHong Zhang 
569920f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
570025616d81SHong Zhang @*/
5701d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5702d71ae5a4SJacob Faibussowitsch {
5703899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5704b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
570525616d81SHong Zhang   IS          isrowb, iscolb;
57060298fd71SBarry Smith   Mat        *bseq = NULL;
570725616d81SHong Zhang 
570825616d81SHong Zhang   PetscFunctionBegin;
570920f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
571020f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
571225616d81SHong Zhang 
571325616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5714d0f46423SBarry Smith     start = A->cmap->rstart;
571525616d81SHong Zhang     cmap  = a->garray;
5716d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5717d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57189566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
571925616d81SHong Zhang     ncols = 0;
57200390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
572125616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
572225616d81SHong Zhang       else break;
572325616d81SHong Zhang     }
572425616d81SHong Zhang     imark = i;
57250390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57260390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57279566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57289566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
572925616d81SHong Zhang   } else {
573008401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57319371c9d4SSatish Balay     isrowb = *rowb;
57329371c9d4SSatish Balay     iscolb = *colb;
57339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
573425616d81SHong Zhang     bseq[0] = *B_seq;
573525616d81SHong Zhang   }
57369566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
573725616d81SHong Zhang   *B_seq = bseq[0];
57389566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
573925616d81SHong Zhang   if (!rowb) {
57409566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
574125616d81SHong Zhang   } else {
574225616d81SHong Zhang     *rowb = isrowb;
574325616d81SHong Zhang   }
574425616d81SHong Zhang   if (!colb) {
57459566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
574625616d81SHong Zhang   } else {
574725616d81SHong Zhang     *colb = iscolb;
574825616d81SHong Zhang   }
57499566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
57503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
575125616d81SHong Zhang }
5752429d309bSHong Zhang 
5753f8487c73SHong Zhang /*
575427430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
575501b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5756429d309bSHong Zhang 
5757c3339decSBarry Smith     Collective
5758429d309bSHong Zhang 
5759429d309bSHong Zhang    Input Parameters:
576027430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
576127430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5762429d309bSHong Zhang 
5763429d309bSHong Zhang    Output Parameter:
57640298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
57650298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
57660298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5767598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5768429d309bSHong Zhang 
576911a5261eSBarry Smith     Developer Note:
577011a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
57716eb45d04SBarry Smith      for this matrix. This is not desirable..
57726eb45d04SBarry Smith 
5773429d309bSHong Zhang     Level: developer
5774429d309bSHong Zhang 
5775f8487c73SHong Zhang */
57766497c311SBarry Smith 
5777d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5778d71ae5a4SJacob Faibussowitsch {
5779899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
57804b8d542aSHong Zhang   VecScatter         ctx;
5781ce94432eSBarry Smith   MPI_Comm           comm;
57823515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
57836497c311SBarry Smith   PetscMPIInt        nrecvs, nsends;
57843515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5785277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
57866497c311SBarry Smith   PetscInt           i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len;
5787277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5788ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5789ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5790429d309bSHong Zhang 
5791429d309bSHong Zhang   PetscFunctionBegin;
57929566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
57939566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5794a7c7454dSHong Zhang 
579520f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
579620f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57979566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
57989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5799a6b2eed2SHong Zhang 
5800ec07b8f8SHong Zhang   if (size == 1) {
5801ec07b8f8SHong Zhang     startsj_s = NULL;
5802ec07b8f8SHong Zhang     bufa_ptr  = NULL;
580352f7967eSHong Zhang     *B_oth    = NULL;
58043ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5805ec07b8f8SHong Zhang   }
5806ec07b8f8SHong Zhang 
5807fa83eaafSHong Zhang   ctx = a->Mvctx;
58084b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58094b8d542aSHong Zhang 
58109566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58113515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58129566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58139566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58149566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5815ddea5d60SJunchao Zhang   rwaits = reqs;
58168e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5817429d309bSHong Zhang 
5818b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5819429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5820a6b2eed2SHong Zhang     /* i-array */
5821a6b2eed2SHong Zhang     /*  post receives */
58229566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5823a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
582474268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5825e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58266497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5827429d309bSHong Zhang     }
5828a6b2eed2SHong Zhang 
5829a6b2eed2SHong Zhang     /* pack the outgoing message */
58309566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58312205254eSKarl Rupp 
58322205254eSKarl Rupp     sstartsj[0] = 0;
58332205254eSKarl Rupp     rstartsj[0] = 0;
5834a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58353515ee7fSJunchao Zhang     if (nsends) {
58363515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58379566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58383515ee7fSJunchao Zhang     }
5839a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58403515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5841e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
584287025532SHong Zhang       for (j = 0; j < nrows; j++) {
5843d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5844e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
58459566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
58462205254eSKarl Rupp 
5847e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
58482205254eSKarl Rupp 
5849e42f35eeSHong Zhang           len += ncols;
58509566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5851e42f35eeSHong Zhang         }
5852a6b2eed2SHong Zhang         k++;
5853429d309bSHong Zhang       }
58546497c311SBarry Smith       PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
58552205254eSKarl Rupp 
5856dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5857429d309bSHong Zhang     }
585887025532SHong Zhang     /* recvs and sends of i-array are completed */
58599566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
58609566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5861e42f35eeSHong Zhang 
5862a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
58639566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
58649566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5865a6b2eed2SHong Zhang 
586687025532SHong Zhang     /* create i-array of B_oth */
58679566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
58682205254eSKarl Rupp 
586987025532SHong Zhang     b_othi[0] = 0;
5870a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5871a6b2eed2SHong Zhang     k         = 0;
5872a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
58733515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
58743515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
587587025532SHong Zhang       for (j = 0; j < nrows; j++) {
587687025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
58779566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5878f91af8c7SBarry Smith         k++;
5879a6b2eed2SHong Zhang       }
5880dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5881a6b2eed2SHong Zhang     }
58829566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5883a6b2eed2SHong Zhang 
58846aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
58859566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
58869566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5887a6b2eed2SHong Zhang 
588887025532SHong Zhang     /* j-array */
5889a6b2eed2SHong Zhang     /*  post receives of j-array */
5890a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
589187025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
58926497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5893a6b2eed2SHong Zhang     }
5894e42f35eeSHong Zhang 
5895e42f35eeSHong Zhang     /* pack the outgoing message j-array */
58963515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5897a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5898e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5899a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
590087025532SHong Zhang       for (j = 0; j < nrows; j++) {
5901d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5902e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59039566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5904ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59059566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5906e42f35eeSHong Zhang         }
590787025532SHong Zhang       }
59086497c311SBarry Smith       PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
590987025532SHong Zhang     }
591087025532SHong Zhang 
591187025532SHong Zhang     /* recvs and sends of j-array are completed */
59129566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
591387025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5914b7f45c76SHong Zhang     sstartsj = *startsj_s;
59151d79065fSBarry Smith     rstartsj = *startsj_r;
591687025532SHong Zhang     bufa     = *bufa_ptr;
59179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5918ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
591987025532SHong Zhang 
592087025532SHong Zhang   /* a-array */
592187025532SHong Zhang   /*  post receives of a-array */
592287025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
592387025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59246497c311SBarry Smith     PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
592587025532SHong Zhang   }
5926e42f35eeSHong Zhang 
5927e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59283515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
592987025532SHong Zhang   for (i = 0; i < nsends; i++) {
5930e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
593187025532SHong Zhang     bufA  = bufa + sstartsj[i];
593287025532SHong Zhang     for (j = 0; j < nrows; j++) {
5933d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5934e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59359566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5936ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59379566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5938e42f35eeSHong Zhang       }
5939a6b2eed2SHong Zhang     }
59406497c311SBarry Smith     PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5941a6b2eed2SHong Zhang   }
594287025532SHong Zhang   /* recvs and sends of a-array are completed */
59439566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59449566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
5945a6b2eed2SHong Zhang 
594687025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5947dd460d27SBarry Smith     Mat_SeqAIJ *b_oth;
5948dd460d27SBarry Smith 
5949a6b2eed2SHong Zhang     /* put together the new matrix */
59509566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
5951a6b2eed2SHong Zhang 
5952a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5953a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
595487025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
5955e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
5956e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
595787025532SHong Zhang     b_oth->nonew   = 0;
5958a6b2eed2SHong Zhang 
59599566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
5960b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
59619566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
59629566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
5963dea91ad1SHong Zhang     } else {
5964b7f45c76SHong Zhang       *startsj_s = sstartsj;
59651d79065fSBarry Smith       *startsj_r = rstartsj;
596687025532SHong Zhang       *bufa_ptr  = bufa;
596787025532SHong Zhang     }
5968fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
59699566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
5970dea91ad1SHong Zhang   }
59713515ee7fSJunchao Zhang 
59729566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
59739566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
59749566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
59753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5976429d309bSHong Zhang }
5977ccd8e176SBarry Smith 
5978cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
5979cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
5980ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
59819779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
5982a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
5983191b95cbSRichard Tran Mills #endif
5984ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
5985cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
59865d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
5987cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
59885d7652ecSHong Zhang #endif
5989*d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
5990d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
5991d24d4204SJose E. Roman #endif
599263c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
599363c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
599463c07aadSStefano Zampini #endif
59953338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
59963338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
59973338378cSStefano Zampini #endif
5998d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
5999d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6000d5e393b6SSuyash Tandon #endif
60013d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60023d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60033d0639e7SStefano Zampini #endif
6004d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60054222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60064222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
600717667f90SBarry Smith 
6008fc4dec0aSBarry Smith /*
6009fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6010fc4dec0aSBarry Smith 
6011fc4dec0aSBarry Smith                n                       p                          p
60122da392ccSBarry Smith         [             ]       [             ]         [                 ]
60132da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60142da392ccSBarry Smith         [             ]       [             ]         [                 ]
6015fc4dec0aSBarry Smith 
6016fc4dec0aSBarry Smith */
6017d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6018d71ae5a4SJacob Faibussowitsch {
6019fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6020fc4dec0aSBarry Smith 
6021fc4dec0aSBarry Smith   PetscFunctionBegin;
60229566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60239566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
6024fb842aefSJose E. Roman   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct));
60259566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60269566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60277fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60289566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60299566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6031fc4dec0aSBarry Smith }
6032fc4dec0aSBarry Smith 
6033d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6034d71ae5a4SJacob Faibussowitsch {
60356718818eSStefano Zampini   PetscBool cisdense;
6036fc4dec0aSBarry Smith 
6037fc4dec0aSBarry Smith   PetscFunctionBegin;
603808401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60399566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60409566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6041d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
604248a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60439566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6044f75ecaa4SHong Zhang 
60454222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
60463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6047fc4dec0aSBarry Smith }
6048fc4dec0aSBarry Smith 
6049d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6050d71ae5a4SJacob Faibussowitsch {
60514222ddf1SHong Zhang   Mat_Product *product = C->product;
60524222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6053fc4dec0aSBarry Smith 
6054fc4dec0aSBarry Smith   PetscFunctionBegin;
605520f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
605620f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
60574222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
60584222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
60593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6060fc4dec0aSBarry Smith }
6061fc4dec0aSBarry Smith 
6062d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6063d71ae5a4SJacob Faibussowitsch {
60644222ddf1SHong Zhang   Mat_Product *product = C->product;
60654222ddf1SHong Zhang 
60664222ddf1SHong Zhang   PetscFunctionBegin;
606748a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
60683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60694222ddf1SHong Zhang }
6070394ed5ebSJunchao Zhang 
607127430b45SBarry Smith /*
607227430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6073394ed5ebSJunchao Zhang 
6074394ed5ebSJunchao Zhang   Input Parameters:
6075394ed5ebSJunchao Zhang 
6076651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6077651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6078394ed5ebSJunchao Zhang 
6079158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6080394ed5ebSJunchao Zhang 
6081394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6082394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6083394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6084394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6085394ed5ebSJunchao Zhang 
6086394ed5ebSJunchao Zhang     Similar for Set2.
6087394ed5ebSJunchao Zhang 
6088394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6089394ed5ebSJunchao Zhang 
6090158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6091394ed5ebSJunchao Zhang 
6092394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6093394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6094394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6095394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6096394ed5ebSJunchao Zhang */
6097d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6098d71ae5a4SJacob Faibussowitsch {
6099394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6100394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6101394ed5ebSJunchao Zhang 
6102394ed5ebSJunchao Zhang   PetscFunctionBegin;
61039566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6104394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6105394ed5ebSJunchao Zhang   i[0]        = 0;
6106394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6107394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6108394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6109394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6110394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6111394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6112394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6113394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6114394ed5ebSJunchao Zhang         imap1[t1] = t;
6115394ed5ebSJunchao Zhang         imap2[t2] = t;
6116394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6117394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61189371c9d4SSatish Balay         t1++;
61199371c9d4SSatish Balay         t2++;
61209371c9d4SSatish Balay         t++;
6121394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6122394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6123394ed5ebSJunchao Zhang         imap1[t1] = t;
6124394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61259371c9d4SSatish Balay         t1++;
61269371c9d4SSatish Balay         t++;
6127394ed5ebSJunchao Zhang       } else {
6128394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6129394ed5ebSJunchao Zhang         imap2[t2] = t;
6130394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61319371c9d4SSatish Balay         t2++;
61329371c9d4SSatish Balay         t++;
6133394ed5ebSJunchao Zhang       }
6134394ed5ebSJunchao Zhang     }
6135394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6136394ed5ebSJunchao Zhang     while (b1 < e1) {
6137394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6138394ed5ebSJunchao Zhang       imap1[t1] = t;
6139394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61409371c9d4SSatish Balay       t1++;
61419371c9d4SSatish Balay       t++;
6142394ed5ebSJunchao Zhang     }
6143394ed5ebSJunchao Zhang     while (b2 < e2) {
6144394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6145394ed5ebSJunchao Zhang       imap2[t2] = t;
6146394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
61479371c9d4SSatish Balay       t2++;
61489371c9d4SSatish Balay       t++;
6149394ed5ebSJunchao Zhang     }
61506497c311SBarry Smith     PetscCall(PetscIntCast(t, i + r + 1));
6151394ed5ebSJunchao Zhang   }
61523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6153394ed5ebSJunchao Zhang }
6154394ed5ebSJunchao Zhang 
615527430b45SBarry Smith /*
615627430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6157394ed5ebSJunchao Zhang 
6158394ed5ebSJunchao Zhang   Input Parameters:
6159394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6160394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6161394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6162394ed5ebSJunchao Zhang 
6163394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6164394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6165394ed5ebSJunchao Zhang 
6166394ed5ebSJunchao Zhang   Output Parameters:
6167394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6168394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6169394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6170394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6171394ed5ebSJunchao Zhang 
6172394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6173158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6174158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6175394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6176394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6177394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6178394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6179394ed5ebSJunchao Zhang 
6180394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6181394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6182394ed5ebSJunchao Zhang 
6183394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6184394ed5ebSJunchao Zhang 
6185158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6186394ed5ebSJunchao Zhang */
6187d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6188d71ae5a4SJacob Faibussowitsch {
6189394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6190394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6191394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6192394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6193394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6194394ed5ebSJunchao Zhang 
6195394ed5ebSJunchao Zhang   PetscFunctionBegin;
61969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
61979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6198394ed5ebSJunchao Zhang   m = rend - rstart;
6199394ed5ebSJunchao Zhang 
6200651b1cf9SStefano Zampini   /* Skip negative rows */
6201651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62029371c9d4SSatish Balay     if (i[k] >= 0) break;
6203394ed5ebSJunchao Zhang 
6204394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6205394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6206394ed5ebSJunchao Zhang   */
6207394ed5ebSJunchao Zhang   while (k < n) {
6208394ed5ebSJunchao Zhang     row = i[k];
6209394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62109371c9d4SSatish Balay     for (s = k; s < n; s++)
62119371c9d4SSatish Balay       if (i[s] != row) break;
6212651b1cf9SStefano Zampini 
62131690c2aeSBarry Smith     /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */
6214394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
62151690c2aeSBarry Smith       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX;
6216394ed5ebSJunchao Zhang     }
62179566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6218158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6219394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6220394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6221394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
62228551dd9cSJunchao Zhang     PetscCheck(k == s || j[s - 1] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is >= matrix column size %" PetscInt_FMT, j[s - 1], mat->cmap->N);
6223394ed5ebSJunchao Zhang 
6224394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6225394ed5ebSJunchao Zhang     Atot += mid - k;
6226394ed5ebSJunchao Zhang     Btot += s - mid;
6227394ed5ebSJunchao Zhang 
6228651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6229394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6230394ed5ebSJunchao Zhang       col = j[p];
62319371c9d4SSatish Balay       do {
62321690c2aeSBarry Smith         j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */
62339371c9d4SSatish Balay         p++;
6234651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6235394ed5ebSJunchao Zhang       Annz++;
6236394ed5ebSJunchao Zhang     }
6237394ed5ebSJunchao Zhang 
6238651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6239394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6240394ed5ebSJunchao Zhang       col = j[p];
6241d71ae5a4SJacob Faibussowitsch       do {
6242d71ae5a4SJacob Faibussowitsch         p++;
6243d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6244394ed5ebSJunchao Zhang       Bnnz++;
6245394ed5ebSJunchao Zhang     }
6246394ed5ebSJunchao Zhang     k = s;
6247394ed5ebSJunchao Zhang   }
6248394ed5ebSJunchao Zhang 
6249394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6250158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6251158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6252158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6253158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6254394ed5ebSJunchao Zhang 
62556aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6256394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6257394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6258394ed5ebSJunchao Zhang     k   = rowBegin[r];
6259394ed5ebSJunchao Zhang     mid = rowMid[r];
6260394ed5ebSJunchao Zhang     s   = rowEnd[r];
62618e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
62628e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6263394ed5ebSJunchao Zhang     Atot += mid - k;
6264394ed5ebSJunchao Zhang     Btot += s - mid;
6265394ed5ebSJunchao Zhang 
6266394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6267394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6268394ed5ebSJunchao Zhang       col = j[p];
6269394ed5ebSJunchao Zhang       q   = p;
6270d71ae5a4SJacob Faibussowitsch       do {
6271d71ae5a4SJacob Faibussowitsch         p++;
6272d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6273394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6274394ed5ebSJunchao Zhang       Annz++;
6275394ed5ebSJunchao Zhang     }
6276394ed5ebSJunchao Zhang 
6277394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6278394ed5ebSJunchao Zhang       col = j[p];
6279394ed5ebSJunchao Zhang       q   = p;
6280d71ae5a4SJacob Faibussowitsch       do {
6281d71ae5a4SJacob Faibussowitsch         p++;
6282d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6283394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6284394ed5ebSJunchao Zhang       Bnnz++;
6285394ed5ebSJunchao Zhang     }
6286394ed5ebSJunchao Zhang   }
6287394ed5ebSJunchao Zhang   /* Output */
6288394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6289394ed5ebSJunchao Zhang   *Annz_  = Annz;
6290394ed5ebSJunchao Zhang   *Atot_  = Atot;
6291394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6292394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6293394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6294394ed5ebSJunchao Zhang   *Btot_  = Btot;
6295394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
62963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6297394ed5ebSJunchao Zhang }
6298394ed5ebSJunchao Zhang 
629927430b45SBarry Smith /*
630027430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6301158ec288SJunchao Zhang 
6302158ec288SJunchao Zhang   Input Parameters:
6303158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6304158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6305158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6306651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6307158ec288SJunchao Zhang 
6308158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6309158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6310158ec288SJunchao Zhang 
6311158ec288SJunchao Zhang   Example:
6312158ec288SJunchao Zhang     nnz1 = 4
6313158ec288SJunchao Zhang     nnz  = 6
6314158ec288SJunchao Zhang     imap = [1,3,4,5]
6315158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6316158ec288SJunchao Zhang    then,
6317158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6318158ec288SJunchao Zhang */
6319d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6320d71ae5a4SJacob Faibussowitsch {
6321158ec288SJunchao Zhang   PetscCount k, p;
6322158ec288SJunchao Zhang 
6323158ec288SJunchao Zhang   PetscFunctionBegin;
6324158ec288SJunchao Zhang   jmap_new[0] = 0;
6325158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6326158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6327158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6328158ec288SJunchao Zhang   }
6329158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6331158ec288SJunchao Zhang }
6332158ec288SJunchao Zhang 
633349abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data)
63342c4ab24aSJunchao Zhang {
633549abdd8aSBarry Smith   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data;
63362c4ab24aSJunchao Zhang 
63372c4ab24aSJunchao Zhang   PetscFunctionBegin;
63382c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63392c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63402c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63412c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63422c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63432c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
63442c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
63452c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
63462c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
63472c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
63482c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
63492c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
63502c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
63512c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
63522c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
63532c4ab24aSJunchao Zhang }
63542c4ab24aSJunchao Zhang 
6355d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6356d71ae5a4SJacob Faibussowitsch {
6357394ed5ebSJunchao Zhang   MPI_Comm             comm;
6358394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6359394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6360394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6361394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
63622c4ab24aSJunchao Zhang   PetscContainer       container;
63632c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6364394ed5ebSJunchao Zhang 
6365394ed5ebSJunchao Zhang   PetscFunctionBegin;
63669566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
63679566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6368cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6369eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6370cbc6b225SStefano Zampini #else
63719566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6372cbc6b225SStefano Zampini #endif
63739566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6374cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6375cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6376cbc6b225SStefano Zampini 
63779566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
63789566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
63799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
63809566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
63819566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
63829566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
63839566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
63849566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
63859566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6386394ed5ebSJunchao Zhang 
63876aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6388394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6389394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6390e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6391e8729f6fSJunchao Zhang 
6392e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6393394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6394394ed5ebSJunchao Zhang 
6395394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6396394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6397394ed5ebSJunchao Zhang      will have positive row indices.
6398394ed5ebSJunchao Zhang   */
6399394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
64001690c2aeSBarry Smith     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN;                /* e.g., -2^31, minimal to move them ahead */
64011690c2aeSBarry Smith     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */
6402f7d195e4SLawrence Mitchell     else {
6403f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
64041690c2aeSBarry Smith       if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */
6405f7d195e4SLawrence Mitchell     }
6406394ed5ebSJunchao Zhang   }
6407394ed5ebSJunchao Zhang 
6408da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64099566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6410651b1cf9SStefano Zampini 
6411651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6412651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64131690c2aeSBarry Smith     if (i1[k] > PETSC_INT_MIN) break;
64146497c311SBarry Smith   PetscCount i1start = k;
6415651b1cf9SStefano Zampini 
64161690c2aeSBarry Smith   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */
64171690c2aeSBarry Smith   for (; k < rem; k++) i1[k] += PETSC_INT_MAX;                                    /* Revert row indices of local rows*/
6418394ed5ebSJunchao Zhang 
64192b35a777SBarry Smith   PetscCheck(n1 == 0 || i1[n1 - 1] < M, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "COO row index %" PetscInt_FMT " is >= the matrix row size %" PetscInt_FMT, i1[n1 - 1], M);
64208551dd9cSJunchao Zhang 
6421394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6422394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6423394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6424394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6425394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6426394ed5ebSJunchao Zhang   const PetscInt *ranges;
6427394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6428394ed5ebSJunchao Zhang 
64299566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6431394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6432394ed5ebSJunchao Zhang     PetscMPIInt owner;
6433394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6434cbc6b225SStefano Zampini 
6435394ed5ebSJunchao Zhang     /* Locate a row range */
6436394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64379566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6438394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6439394ed5ebSJunchao Zhang 
64408551dd9cSJunchao Zhang     /* Find the first index 'p' in [k,n) with i1[p] belonging to next owner */
64419566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6442394ed5ebSJunchao Zhang 
6443394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6444394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6445394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6446394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6447394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6448cbc6b225SStefano Zampini 
64499566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
64509566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
64519566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
64529566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6453394ed5ebSJunchao Zhang       sendto   = sendto2;
6454394ed5ebSJunchao Zhang       nentries = nentries2;
6455394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6456394ed5ebSJunchao Zhang     }
6457394ed5ebSJunchao Zhang     sendto[nsend] = owner;
64586497c311SBarry Smith     PetscCall(PetscIntCast(p - k, &nentries[nsend]));
6459394ed5ebSJunchao Zhang     nsend++;
6460394ed5ebSJunchao Zhang     k = p;
6461394ed5ebSJunchao Zhang   }
6462394ed5ebSJunchao Zhang 
6463394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6464394ed5ebSJunchao Zhang   PetscSF      sf1;
6465394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6466394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6467394ed5ebSJunchao Zhang   PetscInt    *offsets;
6468394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6469394ed5ebSJunchao Zhang 
64709566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
64719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
64729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6473394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6474394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6475394ed5ebSJunchao Zhang     iremote[k].index = 0;
6476394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
647754c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6478394ed5ebSJunchao Zhang   }
64799566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
64809566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
64819566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
64829566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6483e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6484394ed5ebSJunchao Zhang 
6485394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6486394ed5ebSJunchao Zhang   PetscSF sf2;
6487394ed5ebSJunchao Zhang   nroots  = nroots2;
6488394ed5ebSJunchao Zhang   nleaves = nleaves2;
64899566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
64909566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
64919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6492394ed5ebSJunchao Zhang   p = 0;
6493394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
649454c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6495394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6496394ed5ebSJunchao Zhang       iremote[p].rank = sendto[k];
64976497c311SBarry Smith       PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index));
6498394ed5ebSJunchao Zhang     }
6499394ed5ebSJunchao Zhang   }
65009566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6501394ed5ebSJunchao Zhang 
6502394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6503394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6504394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6506834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6507834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6508de0a9f35SPierre Jolivet   PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem);
6509de0a9f35SPierre Jolivet   PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem);
6510834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6511834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6512834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6513834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6514394ed5ebSJunchao Zhang 
65159566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65169566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6517394ed5ebSJunchao Zhang 
6518394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6519394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65209566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6521394ed5ebSJunchao Zhang 
6522651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6523651b1cf9SStefano Zampini   PetscCount *Cperm1;
6524834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6525de0a9f35SPierre Jolivet   PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem);
6526651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6527834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6528651b1cf9SStefano Zampini 
6529651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6530651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6531651b1cf9SStefano Zampini   PetscBool hypre;
653217b874c6SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre));
6533651b1cf9SStefano Zampini   if (hypre) {
6534651b1cf9SStefano Zampini     PetscInt *minj;
6535651b1cf9SStefano Zampini     PetscBT   hasdiag;
6536651b1cf9SStefano Zampini 
6537651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6538651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
65391690c2aeSBarry Smith     for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX;
6540651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6541651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6542651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6543651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6544651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6545651b1cf9SStefano Zampini     }
6546651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6547651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6548651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6549651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6550651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6551651b1cf9SStefano Zampini     }
6552651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6553651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6554651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6555651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6556651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6557651b1cf9SStefano Zampini     }
6558651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6559651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6560651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6561651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6562651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6563651b1cf9SStefano Zampini     }
6564651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6565651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6566651b1cf9SStefano Zampini   }
6567651b1cf9SStefano Zampini 
6568651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6569651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6570651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6571651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6572394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6573394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6574394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6575394ed5ebSJunchao Zhang 
6576651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
65779566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6578651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
65799566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6580394ed5ebSJunchao Zhang 
6581394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6582394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6583394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6584394ed5ebSJunchao Zhang 
65859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
65869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
65879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
65889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6589394ed5ebSJunchao Zhang 
6590394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6591158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6592158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6593158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6594158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6595394ed5ebSJunchao Zhang 
65969566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
65979566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6598158ec288SJunchao Zhang 
6599158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6600158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6601158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6602158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6603158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6604158ec288SJunchao Zhang 
6605158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6606158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6607158ec288SJunchao Zhang 
6608158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6609158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6610158ec288SJunchao Zhang 
6611158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6612158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6613158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6614158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66159566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66169566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6617e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66189566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6619394ed5ebSJunchao Zhang 
6620158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6621158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6622158ec288SJunchao Zhang 
6623394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6624394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6625394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66269566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66279566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66289566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6629394ed5ebSJunchao Zhang     Aj = Aj_new;
6630394ed5ebSJunchao Zhang   }
6631394ed5ebSJunchao Zhang 
6632394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6633394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66349566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66359566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66369566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6637394ed5ebSJunchao Zhang     Bj = Bj_new;
6638394ed5ebSJunchao Zhang   }
6639394ed5ebSJunchao Zhang 
6640cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6641394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6642cbc6b225SStefano Zampini   MatType          rtype;
6643394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6644cf8ba265SJunchao Zhang   PetscObjectState state;
66459566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
66469566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6647394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
66489371c9d4SSatish Balay   if (cstart) {
66499371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
66509371c9d4SSatish Balay   }
6651c508b908SBarry Smith 
66529566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6653c508b908SBarry Smith 
6654c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6655c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
66569566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
66570da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6658c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6659c508b908SBarry Smith 
6660c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6661c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
66629566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
66630da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6664c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6665c508b908SBarry Smith 
66669566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
66675bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6668cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6669462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6670cbc6b225SStefano Zampini 
6671394ed5ebSJunchao Zhang   a          = (Mat_SeqAIJ *)mpiaij->A->data;
6672394ed5ebSJunchao Zhang   b          = (Mat_SeqAIJ *)mpiaij->B->data;
66739f0612e4SBarry Smith   a->free_a  = PETSC_TRUE;
66749f0612e4SBarry Smith   a->free_ij = PETSC_TRUE;
66759f0612e4SBarry Smith   b->free_a  = PETSC_TRUE;
66769f0612e4SBarry Smith   b->free_ij = PETSC_TRUE;
667717b874c6SStefano Zampini   a->maxnz   = a->nz;
667817b874c6SStefano Zampini   b->maxnz   = b->nz;
6679394ed5ebSJunchao Zhang 
6680cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
66819566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
66829566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
66839566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
66849566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6685cbc6b225SStefano Zampini 
66862c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
66872c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
66882c4ab24aSJunchao Zhang   coo->n       = coo_n;
66892c4ab24aSJunchao Zhang   coo->sf      = sf2;
66902c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
66912c4ab24aSJunchao Zhang   coo->recvlen = nroots;
66922c4ab24aSJunchao Zhang   coo->Annz    = Annz;
66932c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
66942c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
66952c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
66962c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
66972c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
66982c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
66992c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67002c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67012c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67022c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67032c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67042c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67052c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67062c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67072c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67082c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67092c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67102c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67112c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67122c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67132c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67142c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
671549abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ));
67162c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67172c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6719394ed5ebSJunchao Zhang }
6720394ed5ebSJunchao Zhang 
6721d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6722d71ae5a4SJacob Faibussowitsch {
6723394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6724394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6725394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67262c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67272c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67282c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67292c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67302c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67312c4ab24aSJunchao Zhang   PetscContainer       container;
67322c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6733394ed5ebSJunchao Zhang 
6734394ed5ebSJunchao Zhang   PetscFunctionBegin;
67352c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67362c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67372c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67382c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67392c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67402c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67412c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67422c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67432c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67442c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67452c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
67462c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
67472c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
67482c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
67492c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
67502c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
67512c4ab24aSJunchao Zhang 
67529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
67539566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6754394ed5ebSJunchao Zhang 
6755394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
67562c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6757394ed5ebSJunchao Zhang 
6758394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
67592c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6760394ed5ebSJunchao Zhang   /* Add local entries to A and B */
67612c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6762da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6763158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6764158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6765394ed5ebSJunchao Zhang   }
67662c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6767158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6768158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6769158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6770394ed5ebSJunchao Zhang   }
67712c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6772394ed5ebSJunchao Zhang 
6773394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
67742c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6775394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6776394ed5ebSJunchao Zhang   }
67772c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6778394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6779394ed5ebSJunchao Zhang   }
67809566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
67819566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
67823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6783394ed5ebSJunchao Zhang }
6784394ed5ebSJunchao Zhang 
6785ccd8e176SBarry Smith /*MC
6786ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6787ccd8e176SBarry Smith 
6788ccd8e176SBarry Smith    Options Database Keys:
678911a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6790ccd8e176SBarry Smith 
6791ccd8e176SBarry Smith    Level: beginner
67920cd7f59aSBarry Smith 
67930cd7f59aSBarry Smith    Notes:
67942ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
67950cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
67960cd7f59aSBarry Smith     in the matrix
67970cd7f59aSBarry Smith 
679811a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
679911a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6800ccd8e176SBarry Smith 
68011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6802ccd8e176SBarry Smith M*/
6803d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6804d71ae5a4SJacob Faibussowitsch {
6805ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6806ccd8e176SBarry Smith   PetscMPIInt size;
6807ccd8e176SBarry Smith 
6808ccd8e176SBarry Smith   PetscFunctionBegin;
68099566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68102205254eSKarl Rupp 
68114dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6812ccd8e176SBarry Smith   B->data       = (void *)b;
6813aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6814ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6815ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6816ccd8e176SBarry Smith   b->size       = size;
68172205254eSKarl Rupp 
68189566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6819ccd8e176SBarry Smith 
6820ccd8e176SBarry Smith   /* build cache for off array entries formed */
68219566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68222205254eSKarl Rupp 
6823ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6824f4259b30SLisandro Dalcin   b->colmap      = NULL;
6825f4259b30SLisandro Dalcin   b->garray      = NULL;
6826ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6827ccd8e176SBarry Smith 
6828ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68290298fd71SBarry Smith   b->lvec  = NULL;
68300298fd71SBarry Smith   b->Mvctx = NULL;
6831ccd8e176SBarry Smith 
6832ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6833f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6834f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6835ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6836ccd8e176SBarry Smith 
6837f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68380298fd71SBarry Smith   b->spptr = NULL;
6839f60c3dc2SHong Zhang 
68409566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68419566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68429566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68439566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68449566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
6846674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ));
68479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
68489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
68499566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
68509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
68513d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
68529566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
68533d0639e7SStefano Zampini #endif
6854d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6855d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6856d5e393b6SSuyash Tandon #endif
68573d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
68589566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
68593d0639e7SStefano Zampini #endif
68609779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
68619566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6862191b95cbSRichard Tran Mills #endif
68639566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
68649566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
68659566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
68669566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
68675d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68689566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
68695d7652ecSHong Zhang #endif
6870*d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
68719566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6872d24d4204SJose E. Roman #endif
68739566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
68749566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
68753dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
68769566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
68779566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
68783dad0653Sstefano_zampini #endif
68799566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
68809566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
68819566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
68829566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
68839566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
68843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6885ccd8e176SBarry Smith }
688681824310SBarry Smith 
68875d83a8b1SBarry Smith /*@
688811a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
688903bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
689003bfb495SBarry Smith 
6891d083f849SBarry Smith   Collective
689203bfb495SBarry Smith 
689303bfb495SBarry Smith   Input Parameters:
689403bfb495SBarry Smith + comm - MPI communicator
689511a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
689603bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6897d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
68982ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
68992ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69002ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6901483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
690204ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
690303bfb495SBarry Smith . a    - matrix values
6904483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69052ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
690603bfb495SBarry Smith - oa   - matrix values
690703bfb495SBarry Smith 
690803bfb495SBarry Smith   Output Parameter:
690903bfb495SBarry Smith . mat - the matrix
691003bfb495SBarry Smith 
691103bfb495SBarry Smith   Level: advanced
691203bfb495SBarry Smith 
691303bfb495SBarry Smith   Notes:
6914f13dfd9eSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user
6915292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
691603bfb495SBarry Smith 
69172ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
691803bfb495SBarry Smith 
69192ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
692003bfb495SBarry Smith 
69217b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69227b55108eSBarry Smith 
6923dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6924dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6925dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6926dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
692711a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6928dca341c0SJed Brown   communication if it is known that only local entries will be set.
692903bfb495SBarry Smith 
69301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6931db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69322b26979fSBarry Smith @*/
6933d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6934d71ae5a4SJacob Faibussowitsch {
693503bfb495SBarry Smith   Mat_MPIAIJ *maij;
693603bfb495SBarry Smith 
693703bfb495SBarry Smith   PetscFunctionBegin;
693808401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6939aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6940aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69419566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69429566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69439566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
694403bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69452205254eSKarl Rupp 
69468d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
694703bfb495SBarry Smith 
69489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
69499566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
695003bfb495SBarry Smith 
69519566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
69529566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
695303bfb495SBarry Smith 
69549566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
69559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
69569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
69579566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
69589566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
69593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
696003bfb495SBarry Smith }
696103bfb495SBarry Smith 
69624e84afc0SStefano Zampini typedef struct {
69634e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
69644e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
69654e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
69664e84afc0SStefano Zampini 
69674e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
69684e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
69694e84afc0SStefano Zampini   PetscScalar *bufa;
69704e84afc0SStefano Zampini   Mat          P_oth;
69714e84afc0SStefano Zampini 
69724e84afc0SStefano Zampini   /* may take advantage of merging product->B */
6973ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
69744e84afc0SStefano Zampini 
6975ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
69764e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
69774e84afc0SStefano Zampini      of the temporary storage */
69784e84afc0SStefano Zampini   PetscBool reusesym;
69794e84afc0SStefano Zampini 
69804e84afc0SStefano Zampini   /* support for COO values insertion */
6981ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
6982ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
6983ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
6984ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
6985c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
6986c215019aSStefano Zampini   PetscMemType mtype;
69874e84afc0SStefano Zampini 
69884e84afc0SStefano Zampini   /* customization */
69894e84afc0SStefano Zampini   PetscBool abmerge;
6990abb89eb1SStefano Zampini   PetscBool P_oth_bind;
69914e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
69924e84afc0SStefano Zampini 
6993ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
6994d71ae5a4SJacob Faibussowitsch {
69954e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
69964e84afc0SStefano Zampini   PetscInt             i;
69974e84afc0SStefano Zampini 
69984e84afc0SStefano Zampini   PetscFunctionBegin;
69999566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70009566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70019566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70029566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70039566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70049566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70059566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
700648a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70079566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70089566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70099566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70109566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70119566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70129566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70144e84afc0SStefano Zampini }
70154e84afc0SStefano Zampini 
7016fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7017fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7018fff043a9SJunchao Zhang  */
7019d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7020d71ae5a4SJacob Faibussowitsch {
7021c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7022c215019aSStefano Zampini 
7023c215019aSStefano Zampini   PetscFunctionBegin;
70249566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7025c215019aSStefano Zampini   if (f) {
70269566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7027c215019aSStefano Zampini   } else {
7028c215019aSStefano Zampini     const PetscScalar *vv;
7029c215019aSStefano Zampini 
70309566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7031c215019aSStefano Zampini     if (n && idx) {
7032c215019aSStefano Zampini       PetscScalar    *w  = v;
7033c215019aSStefano Zampini       const PetscInt *oi = idx;
7034c215019aSStefano Zampini       PetscInt        j;
7035c215019aSStefano Zampini 
7036c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7037c215019aSStefano Zampini     } else {
70389566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7039c215019aSStefano Zampini     }
70409566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7041c215019aSStefano Zampini   }
70423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7043c215019aSStefano Zampini }
7044c215019aSStefano Zampini 
7045d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7046d71ae5a4SJacob Faibussowitsch {
70474e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
70484e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
70494e84afc0SStefano Zampini 
70504e84afc0SStefano Zampini   PetscFunctionBegin;
70514e84afc0SStefano Zampini   MatCheckProduct(C, 1);
705228b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
70534e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
70544e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
705548a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
705648a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
70574e84afc0SStefano Zampini   }
70584e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7059abb89eb1SStefano Zampini 
7060abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
706108401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
70629566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7063abb89eb1SStefano Zampini   }
70644e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
70656497c311SBarry Smith     PetscInt noff;
70664e84afc0SStefano Zampini 
70676497c311SBarry Smith     PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff));
70684e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
70694e84afc0SStefano Zampini     if (noff) {
70706497c311SBarry Smith       PetscInt nown;
7071c215019aSStefano Zampini 
70726497c311SBarry Smith       PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown));
70739566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
70749566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
70754e84afc0SStefano Zampini       n_o += noff;
70764e84afc0SStefano Zampini       n_d += nown;
70774e84afc0SStefano Zampini     } else {
7078c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7079c215019aSStefano Zampini 
70809566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
70814e84afc0SStefano Zampini       n_d += mm->nz;
70824e84afc0SStefano Zampini     }
70834e84afc0SStefano Zampini   }
7084c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
70859566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
70869566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
70874e84afc0SStefano Zampini   }
70889566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
70893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70904e84afc0SStefano Zampini }
70914e84afc0SStefano Zampini 
70924e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
70934e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7094d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7095d71ae5a4SJacob Faibussowitsch {
70964e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7097ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
70984e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
70994e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71004e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71014e84afc0SStefano Zampini   IS                     glob      = NULL;
71024e84afc0SStefano Zampini   const char            *prefix;
71034e84afc0SStefano Zampini   char                   pprefix[256];
71044e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
710582a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
710682a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7107ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7108ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7109ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7110ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7111ddea5d60SJunchao Zhang 
71124e84afc0SStefano Zampini   MatProductType ptype;
7113d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71144e84afc0SStefano Zampini   PetscMPIInt    size;
71154e84afc0SStefano Zampini 
71164e84afc0SStefano Zampini   PetscFunctionBegin;
71174e84afc0SStefano Zampini   MatCheckProduct(C, 1);
711828b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71194e84afc0SStefano Zampini   ptype = product->type;
7120b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7121fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7122fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7123fa046f9fSJunchao Zhang   }
71244e84afc0SStefano Zampini   switch (ptype) {
71254e84afc0SStefano Zampini   case MATPRODUCT_AB:
71264e84afc0SStefano Zampini     A          = product->A;
71274e84afc0SStefano Zampini     P          = product->B;
71284e84afc0SStefano Zampini     m          = A->rmap->n;
71294e84afc0SStefano Zampini     n          = P->cmap->n;
71304e84afc0SStefano Zampini     M          = A->rmap->N;
71314e84afc0SStefano Zampini     N          = P->cmap->N;
7132ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71334e84afc0SStefano Zampini     break;
71344e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71354e84afc0SStefano Zampini     P          = product->A;
71364e84afc0SStefano Zampini     A          = product->B;
71374e84afc0SStefano Zampini     m          = P->cmap->n;
71384e84afc0SStefano Zampini     n          = A->cmap->n;
71394e84afc0SStefano Zampini     M          = P->cmap->N;
71404e84afc0SStefano Zampini     N          = A->cmap->N;
71414e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71424e84afc0SStefano Zampini     break;
71434e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71444e84afc0SStefano Zampini     A          = product->A;
71454e84afc0SStefano Zampini     P          = product->B;
71464e84afc0SStefano Zampini     m          = P->cmap->n;
71474e84afc0SStefano Zampini     n          = P->cmap->n;
71484e84afc0SStefano Zampini     M          = P->cmap->N;
71494e84afc0SStefano Zampini     N          = P->cmap->N;
71504e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71514e84afc0SStefano Zampini     break;
7152d71ae5a4SJacob Faibussowitsch   default:
7153d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
71544e84afc0SStefano Zampini   }
71559566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
71564e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
71574e84afc0SStefano Zampini 
71584e84afc0SStefano Zampini   /* defaults */
71594e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
71604e84afc0SStefano Zampini     mp[i]    = NULL;
71614e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
71624e84afc0SStefano Zampini     rmapt[i] = -1;
71634e84afc0SStefano Zampini     cmapt[i] = -1;
71644e84afc0SStefano Zampini     rmapa[i] = NULL;
71654e84afc0SStefano Zampini     cmapa[i] = NULL;
71664e84afc0SStefano Zampini   }
71674e84afc0SStefano Zampini 
71684e84afc0SStefano Zampini   /* customization */
71699566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
71704e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
71714e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
71724e84afc0SStefano Zampini     if (product->api_user) {
7173d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
71749566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
71759566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7176d0609cedSBarry Smith       PetscOptionsEnd();
71774e84afc0SStefano Zampini     } else {
7178d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
71799566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
71809566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7181d0609cedSBarry Smith       PetscOptionsEnd();
7182abb89eb1SStefano Zampini     }
7183abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7184abb89eb1SStefano Zampini     if (product->api_user) {
7185d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
71869566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7187d0609cedSBarry Smith       PetscOptionsEnd();
7188abb89eb1SStefano Zampini     } else {
7189d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
71909566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7191d0609cedSBarry Smith       PetscOptionsEnd();
71924e84afc0SStefano Zampini     }
71934e84afc0SStefano Zampini   }
71944e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
71954e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
71969566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
71979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
71989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
71999566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72009566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7201ddea5d60SJunchao Zhang 
7202ddea5d60SJunchao Zhang   cp = 0;
72034e84afc0SStefano Zampini   switch (ptype) {
72044e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72059566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72064e84afc0SStefano Zampini 
7207ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7208ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72094e84afc0SStefano Zampini       /* P is product->B */
72109566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72119566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72129566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72139566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72149566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72159566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72169566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72174e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72189566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72199566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72209566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72214e84afc0SStefano Zampini       rmapt[cp] = 1;
72224e84afc0SStefano Zampini       cmapt[cp] = 2;
72234e84afc0SStefano Zampini       cmapa[cp] = globidx;
72244e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72254e84afc0SStefano Zampini       cp++;
7226ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72279566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72289566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72299566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72309566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72319566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72329566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72334e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72349566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72359566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72364e84afc0SStefano Zampini       rmapt[cp] = 1;
72374e84afc0SStefano Zampini       cmapt[cp] = 1;
72384e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72394e84afc0SStefano Zampini       cp++;
72409566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72419566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72429566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72439566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72449566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72459566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72464e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72479566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72489566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72494e84afc0SStefano Zampini       rmapt[cp] = 1;
72504e84afc0SStefano Zampini       cmapt[cp] = 2;
72514e84afc0SStefano Zampini       cmapa[cp] = p->garray;
72524e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72534e84afc0SStefano Zampini       cp++;
72544e84afc0SStefano Zampini     }
7255ddea5d60SJunchao Zhang 
7256ddea5d60SJunchao Zhang     /* A_off * P_other */
72574e84afc0SStefano Zampini     if (mmdata->P_oth) {
72589566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
72599566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7260f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
72619566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
72629566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
72639566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72649566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72659566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72669566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72679566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72684e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72699566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72709566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72714e84afc0SStefano Zampini       rmapt[cp] = 1;
72724e84afc0SStefano Zampini       cmapt[cp] = 2;
72734e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
72744e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72754e84afc0SStefano Zampini       cp++;
72764e84afc0SStefano Zampini     }
72774e84afc0SStefano Zampini     break;
7278ddea5d60SJunchao Zhang 
72794e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
72804e84afc0SStefano Zampini     /* A is product->B */
72819566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7282ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
72839566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
72849566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
72859566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72869566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72879566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72889566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72894e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72909566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72919566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72929566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72934e84afc0SStefano Zampini       rmapt[cp] = 2;
72944e84afc0SStefano Zampini       rmapa[cp] = globidx;
72954e84afc0SStefano Zampini       cmapt[cp] = 2;
72964e84afc0SStefano Zampini       cmapa[cp] = globidx;
72974e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72984e84afc0SStefano Zampini       cp++;
72994e84afc0SStefano Zampini     } else {
73009566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73019566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73029566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73039566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73049566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73059566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73064e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73079566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73089566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73099566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73104e84afc0SStefano Zampini       rmapt[cp] = 1;
73114e84afc0SStefano Zampini       cmapt[cp] = 2;
73124e84afc0SStefano Zampini       cmapa[cp] = globidx;
73134e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73144e84afc0SStefano Zampini       cp++;
73159566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73169566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73179566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73189566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73199566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73209566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73214e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73229566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73239566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73244e84afc0SStefano Zampini       rmapt[cp] = 2;
73254e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73264e84afc0SStefano Zampini       cmapt[cp] = 2;
73274e84afc0SStefano Zampini       cmapa[cp] = globidx;
73284e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73294e84afc0SStefano Zampini       cp++;
73304e84afc0SStefano Zampini     }
73314e84afc0SStefano Zampini     break;
73324e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73339566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73344e84afc0SStefano Zampini     /* P is product->B */
73359566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73369566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73379566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73389566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73399566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73409566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73419566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73424e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73439566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73449566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73459566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73464e84afc0SStefano Zampini     rmapt[cp] = 2;
73474e84afc0SStefano Zampini     rmapa[cp] = globidx;
73484e84afc0SStefano Zampini     cmapt[cp] = 2;
73494e84afc0SStefano Zampini     cmapa[cp] = globidx;
73504e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
73514e84afc0SStefano Zampini     cp++;
73524e84afc0SStefano Zampini     if (mmdata->P_oth) {
73539566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
73549566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7355f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73569566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73579566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73589566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73599566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73609566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73619566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73629566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73634e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73649566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73659566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73664e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
73674e84afc0SStefano Zampini       cp++;
73689566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
73699566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73709566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73719566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73729566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73739566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73744e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73759566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73769566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73774e84afc0SStefano Zampini       rmapt[cp] = 2;
73784e84afc0SStefano Zampini       rmapa[cp] = globidx;
73794e84afc0SStefano Zampini       cmapt[cp] = 2;
73804e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73814e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73824e84afc0SStefano Zampini       cp++;
73834e84afc0SStefano Zampini     }
73844e84afc0SStefano Zampini     break;
7385d71ae5a4SJacob Faibussowitsch   default:
7386d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
73874e84afc0SStefano Zampini   }
73884e84afc0SStefano Zampini   /* sanity check */
73899371c9d4SSatish Balay   if (size > 1)
73909371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
73914e84afc0SStefano Zampini 
73929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7393ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7394ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7395ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7396ddea5d60SJunchao Zhang   }
73974e84afc0SStefano Zampini   mmdata->cp             = cp;
73984e84afc0SStefano Zampini   C->product->data       = mmdata;
73994e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74004e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74014e84afc0SStefano Zampini 
7402c215019aSStefano Zampini   /* memory type */
7403c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74049566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7405d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74069566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7407c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7408d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74093214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7410c215019aSStefano Zampini 
74114e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7412ddea5d60SJunchao Zhang 
7413ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7414ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7415ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7416ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7417ddea5d60SJunchao Zhang   */
74184e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74194e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74204e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7421ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74224e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74234e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74244e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74254e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74264e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74274e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74284e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74294e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7430ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7431ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74324e84afc0SStefano Zampini       }
74334e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74344e84afc0SStefano Zampini   }
7435ddea5d60SJunchao Zhang 
7436ddea5d60SJunchao Zhang   /*
7437ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7438ddea5d60SJunchao Zhang 
7439ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7440ddea5d60SJunchao Zhang 
7441d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7442ddea5d60SJunchao Zhang 
7443ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7444ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7445ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7446ddea5d60SJunchao Zhang 
7447ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7448da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7449ddea5d60SJunchao Zhang   */
74509566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
74519566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7452ddea5d60SJunchao Zhang 
7453ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7454ddea5d60SJunchao Zhang   if (hasoffproc) {
74554e84afc0SStefano Zampini     PetscSF  msf;
74564e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
74574e84afc0SStefano Zampini 
74589566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
74599566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
74609566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7461ddea5d60SJunchao Zhang 
74624e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
74634e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
74644e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
74654e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7466ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
74674e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
74684e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
74694e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
74704e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
74714e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
74724e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
74734e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
74744e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
74754e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
74764e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
74774e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
74784e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
74794e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7480ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
74814e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
74824e84afc0SStefano Zampini               *coi++    = gr;
74834e84afc0SStefano Zampini               *idxoff++ = j;
74844e84afc0SStefano Zampini             }
74854e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
74864e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
74874e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
74884e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
74894e84afc0SStefano Zampini             } else { /* offdiag */
74904e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
74914e84afc0SStefano Zampini             }
74924e84afc0SStefano Zampini             ncoo_o += nz;
7493ddea5d60SJunchao Zhang           } else { /* this is a local row */
74944e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
74954e84afc0SStefano Zampini           }
74964e84afc0SStefano Zampini         }
74974e84afc0SStefano Zampini       }
74984e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
74994e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75004e84afc0SStefano Zampini     }
75014e84afc0SStefano Zampini 
75029566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75036497c311SBarry Smith     PetscInt incoo_o;
75046497c311SBarry Smith     PetscCall(PetscIntCast(ncoo_o, &incoo_o));
75056497c311SBarry Smith     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75069566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75079566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75084e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75099566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75109566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75119566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75129566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75139566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75149566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7515ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75169566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75174e84afc0SStefano Zampini     coo_i = coo_i2;
75184e84afc0SStefano Zampini     coo_j = coo_j2;
75194e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75204e84afc0SStefano Zampini     ncoo = ncoo_d;
75219566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7522c215019aSStefano Zampini 
75239566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75249566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75259566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75264e84afc0SStefano Zampini   }
7527c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75284e84afc0SStefano Zampini 
7529ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75304e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75314e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75324e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75334e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75344e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75354e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75364e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75374e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75384e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75394e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75404e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75414e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75424e84afc0SStefano Zampini 
75434e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7544ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7545ddea5d60SJunchao Zhang       /* fill coo_i */
75464e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75474e84afc0SStefano Zampini         const PetscInt gr = i + rs;
75484e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
75494e84afc0SStefano Zampini       }
7550ddea5d60SJunchao Zhang       /* fill coo_j */
7551ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
75529566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7553ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7554ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7555ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
75564e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
75574e84afc0SStefano Zampini       }
75584e84afc0SStefano Zampini       ncoo_d += mm->nz;
7559ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
75604e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75614e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
75624e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
75634e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7564ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
75654e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7566ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
75674e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
75684e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75694e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7570ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
75714e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75724e84afc0SStefano Zampini           }
75734e84afc0SStefano Zampini           ncoo_d += nz;
75744e84afc0SStefano Zampini         }
75754e84afc0SStefano Zampini       }
75764e84afc0SStefano Zampini     }
75774e84afc0SStefano Zampini   }
757848a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
75799566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
758048a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
75819566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7582ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
75839566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
75844e84afc0SStefano Zampini 
758539cfb508SMark Adams   /* set block sizes */
758639cfb508SMark Adams   A = product->A;
758739cfb508SMark Adams   P = product->B;
758839cfb508SMark Adams   switch (ptype) {
758939cfb508SMark Adams   case MATPRODUCT_PtAP:
759058b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs));
759139cfb508SMark Adams     break;
759239cfb508SMark Adams   case MATPRODUCT_RARt:
759358b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs));
759439cfb508SMark Adams     break;
759539cfb508SMark Adams   case MATPRODUCT_ABC:
759639cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, product->C));
759739cfb508SMark Adams     break;
759839cfb508SMark Adams   case MATPRODUCT_AB:
759939cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, P));
760039cfb508SMark Adams     break;
760139cfb508SMark Adams   case MATPRODUCT_AtB:
760258b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs));
760339cfb508SMark Adams     break;
760439cfb508SMark Adams   case MATPRODUCT_ABt:
760558b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs));
760639cfb508SMark Adams     break;
760739cfb508SMark Adams   default:
760839cfb508SMark Adams     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]);
760939cfb508SMark Adams   }
761039cfb508SMark Adams 
76114e84afc0SStefano Zampini   /* preallocate with COO data */
76129566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76139566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76154e84afc0SStefano Zampini }
76164e84afc0SStefano Zampini 
7617d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7618d71ae5a4SJacob Faibussowitsch {
76194e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76204e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76214e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7622abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76234e84afc0SStefano Zampini #else
76244e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76254e84afc0SStefano Zampini #endif
76264e84afc0SStefano Zampini 
76274e84afc0SStefano Zampini   PetscFunctionBegin;
76284e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76294e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
763048a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
763165e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7632abb89eb1SStefano Zampini     switch (product->type) {
7633abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7634abb89eb1SStefano Zampini       if (product->api_user) {
7635d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76369566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7637d0609cedSBarry Smith         PetscOptionsEnd();
7638abb89eb1SStefano Zampini       } else {
7639d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76409566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7641d0609cedSBarry Smith         PetscOptionsEnd();
7642abb89eb1SStefano Zampini       }
7643abb89eb1SStefano Zampini       break;
7644abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7645abb89eb1SStefano Zampini       if (product->api_user) {
7646d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76479566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7648d0609cedSBarry Smith         PetscOptionsEnd();
7649abb89eb1SStefano Zampini       } else {
7650d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76519566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7652d0609cedSBarry Smith         PetscOptionsEnd();
7653abb89eb1SStefano Zampini       }
7654abb89eb1SStefano Zampini       break;
7655abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7656abb89eb1SStefano Zampini       if (product->api_user) {
7657d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76589566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7659d0609cedSBarry Smith         PetscOptionsEnd();
7660abb89eb1SStefano Zampini       } else {
7661d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76629566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7663d0609cedSBarry Smith         PetscOptionsEnd();
7664abb89eb1SStefano Zampini       }
7665abb89eb1SStefano Zampini       break;
7666d71ae5a4SJacob Faibussowitsch     default:
7667d71ae5a4SJacob Faibussowitsch       break;
7668abb89eb1SStefano Zampini     }
7669abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7670abb89eb1SStefano Zampini   }
76714e84afc0SStefano Zampini #endif
76724e84afc0SStefano Zampini   if (match) {
76734e84afc0SStefano Zampini     switch (product->type) {
76744e84afc0SStefano Zampini     case MATPRODUCT_AB:
76754e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7676d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7677d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7678d71ae5a4SJacob Faibussowitsch       break;
7679d71ae5a4SJacob Faibussowitsch     default:
7680d71ae5a4SJacob Faibussowitsch       break;
76814e84afc0SStefano Zampini     }
76824e84afc0SStefano Zampini   }
76834e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
76849566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
76853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
768681824310SBarry Smith }
768798921bdaSJacob Faibussowitsch 
768898921bdaSJacob Faibussowitsch /*
768972833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
769072833a62Smarkadams4 
769172833a62Smarkadams4    n - the number of block indices in cc[]
769272833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
769372833a62Smarkadams4 */
7694d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7695d71ae5a4SJacob Faibussowitsch {
769672833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
769772833a62Smarkadams4   const PetscInt *idx;
769872833a62Smarkadams4 
769972833a62Smarkadams4   PetscFunctionBegin;
770072833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
770172833a62Smarkadams4   if (nidx) {
770272833a62Smarkadams4     cnt     = 0;
770372833a62Smarkadams4     cc[cnt] = idx[0] / bs;
770472833a62Smarkadams4     for (j = 1; j < nidx; j++) {
770572833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
770672833a62Smarkadams4     }
770772833a62Smarkadams4   }
770872833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
770972833a62Smarkadams4   *n = cnt + 1;
77103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
771172833a62Smarkadams4 }
771272833a62Smarkadams4 
771372833a62Smarkadams4 /*
771472833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
771572833a62Smarkadams4 
771672833a62Smarkadams4     ncollapsed - the number of block indices
771772833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
771872833a62Smarkadams4 */
7719d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7720d71ae5a4SJacob Faibussowitsch {
772172833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
772272833a62Smarkadams4 
772372833a62Smarkadams4   PetscFunctionBegin;
772472833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
772572833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
772672833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
772772833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77289371c9d4SSatish Balay     cprevtmp = cprev;
77299371c9d4SSatish Balay     cprev    = merged;
77309371c9d4SSatish Balay     merged   = cprevtmp;
773172833a62Smarkadams4   }
773272833a62Smarkadams4   *ncollapsed = nprev;
773372833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
773572833a62Smarkadams4 }
773672833a62Smarkadams4 
77372d776b49SBarry Smith /*
773872833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
773972833a62Smarkadams4 
774072833a62Smarkadams4  Input Parameter:
774172833a62Smarkadams4  . Amat - matrix
774272833a62Smarkadams4  - symmetrize - make the result symmetric
774372833a62Smarkadams4  + scale - scale with diagonal
774472833a62Smarkadams4 
774572833a62Smarkadams4  Output Parameter:
774672833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
774772833a62Smarkadams4 
774872833a62Smarkadams4 */
7749e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7750d71ae5a4SJacob Faibussowitsch {
775172833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
775272833a62Smarkadams4   MPI_Comm  comm;
775372833a62Smarkadams4   Mat       Gmat;
775472833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
775572833a62Smarkadams4   Mat       a, b, c;
775672833a62Smarkadams4   MatType   jtype;
775772833a62Smarkadams4 
775872833a62Smarkadams4   PetscFunctionBegin;
775972833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
776072833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
776172833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
776272833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
776372833a62Smarkadams4   nloc = (Iend - Istart) / bs;
776472833a62Smarkadams4 
776572833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
776672833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
776772833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
776872833a62Smarkadams4 
776972833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
777072833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
777172833a62Smarkadams4      implementation */
777272833a62Smarkadams4   if (bs > 1) {
777372833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
777472833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
777572833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
777672833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
777772833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
777872833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
777972833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
77802cf69117Smarkadams4       MatScalar *aa, val, *AA;
77812cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
77826497c311SBarry Smith 
77839371c9d4SSatish Balay       if (isseqaij) {
77849371c9d4SSatish Balay         a = Amat;
77859371c9d4SSatish Balay         b = NULL;
77869371c9d4SSatish Balay       } else {
778772833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
77889371c9d4SSatish Balay         a             = d->A;
77899371c9d4SSatish Balay         b             = d->B;
779072833a62Smarkadams4       }
779172833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
779232603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
779372833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
77942cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
779559ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
77966497c311SBarry Smith 
779759ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
779859ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
779959ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
780059ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
780172833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
780259ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
780359ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
780459ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
780559ee9f9fSPierre Jolivet             else {
780659ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
780759ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
780859ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
780972833a62Smarkadams4               }
781059ee9f9fSPierre Jolivet             }
781159ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
781259ee9f9fSPierre Jolivet           }
781359ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
781472833a62Smarkadams4           if (!ok) {
781572833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
781659ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
781772833a62Smarkadams4             goto old_bs;
781872833a62Smarkadams4           }
781972833a62Smarkadams4         }
782072833a62Smarkadams4       }
782172833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
782272833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
782372833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78242cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
782572833a62Smarkadams4       // diag
782672833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
782772833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
78286497c311SBarry Smith 
782972833a62Smarkadams4         ai = aseq->i;
783072833a62Smarkadams4         n  = ai[brow + 1] - ai[brow];
783172833a62Smarkadams4         aj = aseq->j + ai[brow];
78326497c311SBarry Smith         for (PetscInt k = 0; k < n; k += bs) {   // block columns
783372833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
783472833a62Smarkadams4           val        = 0;
7835e02fb3cdSMark Adams           if (index_size == 0) {
78366497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
783772833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
78386497c311SBarry Smith               for (PetscInt jj = 0; jj < bs; jj++) {    // columns in block
783972833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
784072833a62Smarkadams4               }
784172833a62Smarkadams4             }
7842e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78436497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78446497c311SBarry Smith               PetscInt ii = index[iii];
7845e02fb3cdSMark Adams               aa          = aseq->a + ai[brow + ii] + k;
78466497c311SBarry Smith               for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block
78476497c311SBarry Smith                 PetscInt jj = index[jjj];
7848cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7849e02fb3cdSMark Adams               }
7850e02fb3cdSMark Adams             }
7851e02fb3cdSMark Adams           }
7852835f2295SStefano Zampini           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
785372833a62Smarkadams4           AA[k / bs] = val;
785472833a62Smarkadams4         }
785572833a62Smarkadams4         grow = Istart / bs + brow / bs;
785666521e1fSMark Adams         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES));
785772833a62Smarkadams4       }
785872833a62Smarkadams4       // off-diag
785972833a62Smarkadams4       if (ismpiaij) {
786072833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
786172833a62Smarkadams4         const PetscScalar *vals;
786272833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
78636497c311SBarry Smith 
786472833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
786572833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
786672833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
78676497c311SBarry Smith           for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
786859ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
786972833a62Smarkadams4             AA[k / bs] = 0;
787072833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
787172833a62Smarkadams4           }
787272833a62Smarkadams4           nc = ncols / bs;
787372833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7874e02fb3cdSMark Adams           if (index_size == 0) {
78756497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
787672833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
78776497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
78786497c311SBarry Smith                 for (PetscInt jj = 0; jj < bs; jj++) { // cols in block
7879835f2295SStefano Zampini                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
788072833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
788172833a62Smarkadams4                 }
788272833a62Smarkadams4               }
788372833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
788472833a62Smarkadams4             }
7885e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78866497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78876497c311SBarry Smith               PetscInt ii = index[iii];
7888e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
78896497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
78906497c311SBarry Smith                 for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block
78916497c311SBarry Smith                   PetscInt jj = index[jjj];
7892e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7893e02fb3cdSMark Adams                 }
7894e02fb3cdSMark Adams               }
7895e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7896e02fb3cdSMark Adams             }
7897e02fb3cdSMark Adams           }
789872833a62Smarkadams4           grow = Istart / bs + brow / bs;
789966521e1fSMark Adams           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES));
790072833a62Smarkadams4         }
790172833a62Smarkadams4       }
790272833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
790372833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79042cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
790572833a62Smarkadams4     } else {
790672833a62Smarkadams4       const PetscScalar *vals;
790772833a62Smarkadams4       const PetscInt    *idx;
790872833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
790972833a62Smarkadams4     old_bs:
791072833a62Smarkadams4       /*
791172833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
791272833a62Smarkadams4        */
791372833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
791432603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
791572833a62Smarkadams4       if (isseqaij) {
791672833a62Smarkadams4         PetscInt max_d_nnz;
79176497c311SBarry Smith 
791872833a62Smarkadams4         /*
791972833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
792072833a62Smarkadams4          */
792172833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
792272833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
792372833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
792448a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
792572833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
792672833a62Smarkadams4       } else if (ismpiaij) {
792772833a62Smarkadams4         Mat             Daij, Oaij;
792872833a62Smarkadams4         const PetscInt *garray;
792972833a62Smarkadams4         PetscInt        max_d_nnz;
79306497c311SBarry Smith 
793172833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
793272833a62Smarkadams4         /*
793372833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
793472833a62Smarkadams4          */
793572833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
793672833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
793772833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
793848a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
793972833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
794072833a62Smarkadams4         /*
794172833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
794272833a62Smarkadams4          */
794372833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
794472833a62Smarkadams4           o_nnz[jj] = 0;
794572833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
794672833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
794772833a62Smarkadams4             o_nnz[jj] += ncols;
794872833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
794972833a62Smarkadams4           }
795072833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
795172833a62Smarkadams4         }
795272833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
795372833a62Smarkadams4       /* get scalar copy (norms) of matrix */
795472833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
795572833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
795672833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
795772833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
795872833a62Smarkadams4         PetscInt dest_row = Ii / bs;
79596497c311SBarry Smith 
796072833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
796172833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
796272833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
796372833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
79646497c311SBarry Smith 
796572833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
796672833a62Smarkadams4         }
796772833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
796872833a62Smarkadams4       }
796972833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
797072833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
797172833a62Smarkadams4     }
797272833a62Smarkadams4   } else {
79732d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
79742d776b49SBarry Smith     else {
79752d776b49SBarry Smith       Gmat = Amat;
79762d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
79772d776b49SBarry Smith     }
79789371c9d4SSatish Balay     if (isseqaij) {
79799371c9d4SSatish Balay       a = Gmat;
79809371c9d4SSatish Balay       b = NULL;
79819371c9d4SSatish Balay     } else {
798272833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
79839371c9d4SSatish Balay       a             = d->A;
79849371c9d4SSatish Balay       b             = d->B;
798572833a62Smarkadams4     }
79862d776b49SBarry Smith     if (filter >= 0 || scale) {
79872d776b49SBarry Smith       /* take absolute value of each entry */
798872833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
798972833a62Smarkadams4         MatInfo      info;
799072833a62Smarkadams4         PetscScalar *avals;
79916497c311SBarry Smith 
799272833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
799372833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
799472833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
799572833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
799672833a62Smarkadams4       }
799772833a62Smarkadams4     }
79982d776b49SBarry Smith   }
799972833a62Smarkadams4   if (symmetrize) {
8000b94d7dedSBarry Smith     PetscBool isset, issym;
80016497c311SBarry Smith 
8002b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
8003b94d7dedSBarry Smith     if (!isset || !issym) {
800472833a62Smarkadams4       Mat matTrans;
80056497c311SBarry Smith 
800672833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
80071fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
800872833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
800972833a62Smarkadams4     }
801072833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80112d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
801272833a62Smarkadams4   if (scale) {
801372833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
801472833a62Smarkadams4     Vec diag;
80156497c311SBarry Smith 
801672833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
801772833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
801872833a62Smarkadams4     PetscCall(VecReciprocal(diag));
801972833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
802072833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
802172833a62Smarkadams4     PetscCall(VecDestroy(&diag));
802272833a62Smarkadams4   }
802372833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80242d776b49SBarry Smith   if (filter >= 0) {
80252ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80262ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80272d776b49SBarry Smith   }
802872833a62Smarkadams4   *a_Gmat = Gmat;
80293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
803072833a62Smarkadams4 }
803172833a62Smarkadams4 
803203db1824SAlex Lindsay PETSC_INTERN PetscErrorCode MatGetCurrentMemType_MPIAIJ(Mat A, PetscMemType *memtype)
803303db1824SAlex Lindsay {
803403db1824SAlex Lindsay   Mat_MPIAIJ  *mpiaij = (Mat_MPIAIJ *)A->data;
803503db1824SAlex Lindsay   PetscMemType mD = PETSC_MEMTYPE_HOST, mO = PETSC_MEMTYPE_HOST;
803603db1824SAlex Lindsay 
803703db1824SAlex Lindsay   PetscFunctionBegin;
803803db1824SAlex Lindsay   if (mpiaij->A) PetscCall(MatGetCurrentMemType(mpiaij->A, &mD));
803903db1824SAlex Lindsay   if (mpiaij->B) PetscCall(MatGetCurrentMemType(mpiaij->B, &mO));
804003db1824SAlex Lindsay   *memtype = (mD == mO) ? mD : PETSC_MEMTYPE_HOST;
804103db1824SAlex Lindsay   PetscFunctionReturn(PETSC_SUCCESS);
804203db1824SAlex Lindsay }
804303db1824SAlex Lindsay 
804472833a62Smarkadams4 /*
804598921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
804698921bdaSJacob Faibussowitsch */
804798921bdaSJacob Faibussowitsch 
804898921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80499566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80509566063dSJacob Faibussowitsch #undef PetscCall
80519371c9d4SSatish Balay #define PetscCall(...) \
80529371c9d4SSatish Balay   do { \
80535f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
805498921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
805598921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
805698921bdaSJacob Faibussowitsch       return; \
805798921bdaSJacob Faibussowitsch     } \
805898921bdaSJacob Faibussowitsch   } while (0)
805998921bdaSJacob Faibussowitsch 
806098921bdaSJacob Faibussowitsch #undef SETERRQ
80619371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80629371c9d4SSatish Balay   do { \
806398921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
806498921bdaSJacob Faibussowitsch     return; \
806598921bdaSJacob Faibussowitsch   } while (0)
806698921bdaSJacob Faibussowitsch 
806798921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
806898921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
806998921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
807098921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
807198921bdaSJacob Faibussowitsch #else
807298921bdaSJacob Faibussowitsch #endif
8073d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8074d71ae5a4SJacob Faibussowitsch {
807598921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
807698921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
807798921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
807898921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
807998921bdaSJacob Faibussowitsch   PetscScalar value;
808098921bdaSJacob Faibussowitsch 
808198921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
808298921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80835f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
808498921bdaSJacob Faibussowitsch   {
808598921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
808698921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
808798921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
808898921bdaSJacob Faibussowitsch 
808998921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
809098921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
809198921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
809298921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
809398921bdaSJacob Faibussowitsch     MatScalar  *aa;
8094f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
809598921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
809698921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
809798921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
809898921bdaSJacob Faibussowitsch     MatScalar  *ba;
809998921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
810098921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
810198921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
810298921bdaSJacob Faibussowitsch 
810398921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
810498921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
810598921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
810698921bdaSJacob Faibussowitsch 
810798921bdaSJacob Faibussowitsch     PetscFunctionBegin;
81089566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
81099566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
811098921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
811198921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
81126bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
811398921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
811498921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
811598921bdaSJacob Faibussowitsch         lastcol1 = -1;
811698921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
811798921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
811898921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
811998921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
812098921bdaSJacob Faibussowitsch         low1     = 0;
812198921bdaSJacob Faibussowitsch         high1    = nrow1;
812298921bdaSJacob Faibussowitsch         lastcol2 = -1;
812398921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
812498921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
812598921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
812698921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
812798921bdaSJacob Faibussowitsch         low2     = 0;
812898921bdaSJacob Faibussowitsch         high2    = nrow2;
812998921bdaSJacob Faibussowitsch 
813098921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
813198921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
813298921bdaSJacob Faibussowitsch           else value = v[i + j * m];
813398921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
813498921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
813598921bdaSJacob Faibussowitsch             col = in[j] - cstart;
813698921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
813798921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
813898921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
813963a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
814098921bdaSJacob Faibussowitsch           } else {
814198921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
814248a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
814398921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8144eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
814598921bdaSJacob Faibussowitsch               col--;
814698921bdaSJacob Faibussowitsch #else
814798921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
814898921bdaSJacob Faibussowitsch #endif
8149f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
8150eb14dd14SAlex Lindsay                 PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
815198921bdaSJacob Faibussowitsch                 col = in[j];
815298921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
815398921bdaSJacob Faibussowitsch                 B        = aij->B;
815498921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81559371c9d4SSatish Balay                 bimax    = b->imax;
81569371c9d4SSatish Balay                 bi       = b->i;
81579371c9d4SSatish Balay                 bilen    = b->ilen;
81589371c9d4SSatish Balay                 bj       = b->j;
815998921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
816098921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
816198921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
816298921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
816398921bdaSJacob Faibussowitsch                 low2     = 0;
816498921bdaSJacob Faibussowitsch                 high2    = nrow2;
816598921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
816698921bdaSJacob Faibussowitsch                 ba       = b->a;
816798921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
816898921bdaSJacob Faibussowitsch               }
816998921bdaSJacob Faibussowitsch             } else col = in[j];
817098921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
817198921bdaSJacob Faibussowitsch           }
817298921bdaSJacob Faibussowitsch         }
817398921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
817498921bdaSJacob Faibussowitsch         if (roworiented) {
81759566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
817698921bdaSJacob Faibussowitsch         } else {
81779566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
817898921bdaSJacob Faibussowitsch         }
817998921bdaSJacob Faibussowitsch       }
818098921bdaSJacob Faibussowitsch     }
81819566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81829566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
818398921bdaSJacob Faibussowitsch   }
818498921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
818598921bdaSJacob Faibussowitsch }
818672833a62Smarkadams4 
818798921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
818898921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
818998921bdaSJacob Faibussowitsch  * original definitions */
81909566063dSJacob Faibussowitsch #undef PetscCall
819198921bdaSJacob Faibussowitsch #undef SETERRQ
8192