1cb512458SBarry Smith #ifndef lint 2*d65a2f8fSBarry Smith static char vcid[] = "$Id: mpiaij.c,v 1.81 1995/09/30 19:28:49 bsmith Exp bsmith $"; 3cb512458SBarry Smith #endif 48a729477SBarry Smith 51eb62cbbSBarry Smith #include "mpiaij.h" 68a729477SBarry Smith #include "vec/vecimpl.h" 7d6dfbf8fSBarry Smith #include "inline/spops.h" 88a729477SBarry Smith 99e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column 109e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 119e25ed09SBarry Smith storage of the matrix. This is done in a non scable way since the 129e25ed09SBarry Smith length of colmap equals the global matrix length. 139e25ed09SBarry Smith */ 14b7c46309SBarry Smith static int CreateColmap_Private(Mat mat) 159e25ed09SBarry Smith { 1644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 17ec8511deSBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data; 18416022c9SBarry Smith int n = B->n,i,shift = B->indexshift; 19dbb450caSBarry Smith 2078b31e54SBarry Smith aij->colmap = (int *) PETSCMALLOC(aij->N*sizeof(int));CHKPTRQ(aij->colmap); 21464493b3SBarry Smith PLogObjectMemory(mat,aij->N*sizeof(int)); 22416022c9SBarry Smith PetscZero(aij->colmap,aij->N*sizeof(int)); 23dbb450caSBarry Smith for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i-shift; 249e25ed09SBarry Smith return 0; 259e25ed09SBarry Smith } 269e25ed09SBarry Smith 272493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat); 282493cbb0SBarry Smith 2951c98ccdSLois Curfman McInnes static int MatGetReordering_MPIAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm) 30299609e3SLois Curfman McInnes { 31299609e3SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 32299609e3SLois Curfman McInnes int ierr; 33299609e3SLois Curfman McInnes if (aij->numtids == 1) { 3451c98ccdSLois Curfman McInnes ierr = MatGetReordering(aij->A,type,rperm,cperm); CHKERRQ(ierr); 35416022c9SBarry Smith } else SETERRQ(1,"MatGetReordering_MPIAIJ:not yet supported in parallel"); 36299609e3SLois Curfman McInnes return 0; 37299609e3SLois Curfman McInnes } 38299609e3SLois Curfman McInnes 392ee70a88SLois Curfman McInnes static int MatSetValues_MPIAIJ(Mat mat,int m,int *idxm,int n, 401eb62cbbSBarry Smith int *idxn,Scalar *v,InsertMode addv) 418a729477SBarry Smith { 4244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 43dbb450caSBarry Smith Mat_SeqAIJ *C = (Mat_SeqAIJ*) aij->A->data; 441eb62cbbSBarry Smith int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 451eb62cbbSBarry Smith int cstart = aij->cstart, cend = aij->cend,row,col; 46dbb450caSBarry Smith int shift = C->indexshift; 478a729477SBarry Smith 4807a0e7adSLois Curfman McInnes if (aij->insertmode != NOTSETVALUES && aij->insertmode != addv) { 49bbb6d6a8SBarry Smith SETERRQ(1,"MatSetValues_MPIAIJ:You cannot mix inserts and adds"); 508a729477SBarry Smith } 511eb62cbbSBarry Smith aij->insertmode = addv; 528a729477SBarry Smith for ( i=0; i<m; i++ ) { 53bbb6d6a8SBarry Smith if (idxm[i] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative row"); 54bbb6d6a8SBarry Smith if (idxm[i] >= aij->M) SETERRQ(1,"MatSetValues_MPIAIJ:Row too large"); 551eb62cbbSBarry Smith if (idxm[i] >= rstart && idxm[i] < rend) { 561eb62cbbSBarry Smith row = idxm[i] - rstart; 571eb62cbbSBarry Smith for ( j=0; j<n; j++ ) { 58bbb6d6a8SBarry Smith if (idxn[j] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative column"); 59bbb6d6a8SBarry Smith if (idxn[j] >= aij->N) SETERRQ(1,"MatSetValues_MPIAIJ:Col too large"); 601eb62cbbSBarry Smith if (idxn[j] >= cstart && idxn[j] < cend){ 611eb62cbbSBarry Smith col = idxn[j] - cstart; 6278b31e54SBarry Smith ierr = MatSetValues(aij->A,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr); 631eb62cbbSBarry Smith } 641eb62cbbSBarry Smith else { 65d6dfbf8fSBarry Smith if (aij->assembled) { 66b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 67dbb450caSBarry Smith col = aij->colmap[idxn[j]] + shift; 68ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 692493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 702493cbb0SBarry Smith col = idxn[j]; 71d6dfbf8fSBarry Smith } 729e25ed09SBarry Smith } 739e25ed09SBarry Smith else col = idxn[j]; 7478b31e54SBarry Smith ierr = MatSetValues(aij->B,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr); 751eb62cbbSBarry Smith } 761eb62cbbSBarry Smith } 771eb62cbbSBarry Smith } 781eb62cbbSBarry Smith else { 79416022c9SBarry Smith ierr = StashValues_Private(&aij->stash,idxm[i],n,idxn,v+i*n,addv);CHKERRQ(ierr); 801eb62cbbSBarry Smith } 818a729477SBarry Smith } 828a729477SBarry Smith return 0; 838a729477SBarry Smith } 848a729477SBarry Smith 85fc76ce87SLois Curfman McInnes static int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode) 868a729477SBarry Smith { 8744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 88d6dfbf8fSBarry Smith MPI_Comm comm = mat->comm; 896abc6512SBarry Smith int numtids = aij->numtids, *owners = aij->rowners; 90416022c9SBarry Smith int mytid = aij->mytid,tag = mat->tag, *owner,*starts,count,ierr; 911eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 926abc6512SBarry Smith int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 931eb62cbbSBarry Smith InsertMode addv; 941eb62cbbSBarry Smith Scalar *rvalues,*svalues; 951eb62cbbSBarry Smith 961eb62cbbSBarry Smith /* make sure all processors are either in INSERTMODE or ADDMODE */ 97*d65a2f8fSBarry Smith MPI_Allreduce(&aij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm); 98dbb450caSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 99bbb6d6a8SBarry Smith SETERRQ(1,"MatAssemblyBegin_MPIAIJ:Some processors inserted others added"); 1001eb62cbbSBarry Smith } 1011eb62cbbSBarry Smith aij->insertmode = addv; /* in case this processor had no cache */ 1021eb62cbbSBarry Smith 1031eb62cbbSBarry Smith /* first count number of contributors to each processor */ 10478b31e54SBarry Smith nprocs = (int *) PETSCMALLOC( 2*numtids*sizeof(int) ); CHKPTRQ(nprocs); 105416022c9SBarry Smith PetscZero(nprocs,2*numtids*sizeof(int)); procs = nprocs + numtids; 10678b31e54SBarry Smith owner = (int *) PETSCMALLOC( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 1071eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1081eb62cbbSBarry Smith idx = aij->stash.idx[i]; 1091eb62cbbSBarry Smith for ( j=0; j<numtids; j++ ) { 1101eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 1111eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; break; 1128a729477SBarry Smith } 1138a729477SBarry Smith } 1148a729477SBarry Smith } 1151eb62cbbSBarry Smith nsends = 0; for ( i=0; i<numtids; i++ ) { nsends += procs[i];} 1161eb62cbbSBarry Smith 1171eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 11878b31e54SBarry Smith work = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(work); 119*d65a2f8fSBarry Smith MPI_Allreduce(procs, work,numtids,MPI_INT,MPI_SUM,comm); 1201eb62cbbSBarry Smith nreceives = work[mytid]; 121*d65a2f8fSBarry Smith MPI_Allreduce( nprocs, work,numtids,MPI_INT,MPI_MAX,comm); 1221eb62cbbSBarry Smith nmax = work[mytid]; 12378b31e54SBarry Smith PETSCFREE(work); 1241eb62cbbSBarry Smith 1251eb62cbbSBarry Smith /* post receives: 1261eb62cbbSBarry Smith 1) each message will consist of ordered pairs 1271eb62cbbSBarry Smith (global index,value) we store the global index as a double 128d6dfbf8fSBarry Smith to simplify the message passing. 1291eb62cbbSBarry Smith 2) since we don't know how long each individual message is we 1301eb62cbbSBarry Smith allocate the largest needed buffer for each receive. Potentially 1311eb62cbbSBarry Smith this is a lot of wasted space. 1321eb62cbbSBarry Smith 1331eb62cbbSBarry Smith 1341eb62cbbSBarry Smith This could be done better. 1351eb62cbbSBarry Smith */ 13678b31e54SBarry Smith rvalues = (Scalar *) PETSCMALLOC(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 13778b31e54SBarry Smith CHKPTRQ(rvalues); 13878b31e54SBarry Smith recv_waits = (MPI_Request *) PETSCMALLOC((nreceives+1)*sizeof(MPI_Request)); 13978b31e54SBarry Smith CHKPTRQ(recv_waits); 1401eb62cbbSBarry Smith for ( i=0; i<nreceives; i++ ) { 141416022c9SBarry Smith MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 1421eb62cbbSBarry Smith comm,recv_waits+i); 1431eb62cbbSBarry Smith } 1441eb62cbbSBarry Smith 1451eb62cbbSBarry Smith /* do sends: 1461eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 1471eb62cbbSBarry Smith the ith processor 1481eb62cbbSBarry Smith */ 149416022c9SBarry Smith svalues = (Scalar *) PETSCMALLOC(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 15078b31e54SBarry Smith send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request)); 15178b31e54SBarry Smith CHKPTRQ(send_waits); 15278b31e54SBarry Smith starts = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(starts); 1531eb62cbbSBarry Smith starts[0] = 0; 1541eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1551eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1561eb62cbbSBarry Smith svalues[3*starts[owner[i]]] = (Scalar) aij->stash.idx[i]; 1571eb62cbbSBarry Smith svalues[3*starts[owner[i]]+1] = (Scalar) aij->stash.idy[i]; 1581eb62cbbSBarry Smith svalues[3*(starts[owner[i]]++)+2] = aij->stash.array[i]; 1591eb62cbbSBarry Smith } 16078b31e54SBarry Smith PETSCFREE(owner); 1611eb62cbbSBarry Smith starts[0] = 0; 1621eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1631eb62cbbSBarry Smith count = 0; 1641eb62cbbSBarry Smith for ( i=0; i<numtids; i++ ) { 1651eb62cbbSBarry Smith if (procs[i]) { 166416022c9SBarry Smith MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag, 1671eb62cbbSBarry Smith comm,send_waits+count++); 1681eb62cbbSBarry Smith } 1691eb62cbbSBarry Smith } 17078b31e54SBarry Smith PETSCFREE(starts); PETSCFREE(nprocs); 1711eb62cbbSBarry Smith 1721eb62cbbSBarry Smith /* Free cache space */ 17378b31e54SBarry Smith ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr); 1741eb62cbbSBarry Smith 1751eb62cbbSBarry Smith aij->svalues = svalues; aij->rvalues = rvalues; 1761eb62cbbSBarry Smith aij->nsends = nsends; aij->nrecvs = nreceives; 1771eb62cbbSBarry Smith aij->send_waits = send_waits; aij->recv_waits = recv_waits; 1781eb62cbbSBarry Smith aij->rmax = nmax; 1791eb62cbbSBarry Smith 1801eb62cbbSBarry Smith return 0; 1811eb62cbbSBarry Smith } 18244a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat); 1831eb62cbbSBarry Smith 184fc76ce87SLois Curfman McInnes static int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode) 1851eb62cbbSBarry Smith { 18644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 187dbb450caSBarry Smith Mat_SeqAIJ *C = (Mat_SeqAIJ *) aij->A->data; 1881eb62cbbSBarry Smith MPI_Status *send_status,recv_status; 189416022c9SBarry Smith int imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr; 190416022c9SBarry Smith int row,col,other_disassembled,shift = C->indexshift; 1911eb62cbbSBarry Smith Scalar *values,val; 1921eb62cbbSBarry Smith InsertMode addv = aij->insertmode; 1931eb62cbbSBarry Smith 1941eb62cbbSBarry Smith /* wait on receives */ 1951eb62cbbSBarry Smith while (count) { 196d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status); 1971eb62cbbSBarry Smith /* unpack receives into our local space */ 198d6dfbf8fSBarry Smith values = aij->rvalues + 3*imdex*aij->rmax; 199c60448a5SBarry Smith MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 2001eb62cbbSBarry Smith n = n/3; 2011eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 2021eb62cbbSBarry Smith row = (int) PETSCREAL(values[3*i]) - aij->rstart; 2031eb62cbbSBarry Smith col = (int) PETSCREAL(values[3*i+1]); 2041eb62cbbSBarry Smith val = values[3*i+2]; 2051eb62cbbSBarry Smith if (col >= aij->cstart && col < aij->cend) { 2061eb62cbbSBarry Smith col -= aij->cstart; 2071eb62cbbSBarry Smith MatSetValues(aij->A,1,&row,1,&col,&val,addv); 2081eb62cbbSBarry Smith } 2091eb62cbbSBarry Smith else { 210d6dfbf8fSBarry Smith if (aij->assembled) { 211b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 212dbb450caSBarry Smith col = aij->colmap[col] + shift; 213ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 2142493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2152493cbb0SBarry Smith col = (int) PETSCREAL(values[3*i+1]); 216d6dfbf8fSBarry Smith } 2179e25ed09SBarry Smith } 2181eb62cbbSBarry Smith MatSetValues(aij->B,1,&row,1,&col,&val,addv); 2191eb62cbbSBarry Smith } 2201eb62cbbSBarry Smith } 2211eb62cbbSBarry Smith count--; 2221eb62cbbSBarry Smith } 22378b31e54SBarry Smith PETSCFREE(aij->recv_waits); PETSCFREE(aij->rvalues); 2241eb62cbbSBarry Smith 2251eb62cbbSBarry Smith /* wait on sends */ 2261eb62cbbSBarry Smith if (aij->nsends) { 22778b31e54SBarry Smith send_status = (MPI_Status *) PETSCMALLOC(aij->nsends*sizeof(MPI_Status)); 22878b31e54SBarry Smith CHKPTRQ(send_status); 2291eb62cbbSBarry Smith MPI_Waitall(aij->nsends,aij->send_waits,send_status); 23078b31e54SBarry Smith PETSCFREE(send_status); 2311eb62cbbSBarry Smith } 23278b31e54SBarry Smith PETSCFREE(aij->send_waits); PETSCFREE(aij->svalues); 2331eb62cbbSBarry Smith 23407a0e7adSLois Curfman McInnes aij->insertmode = NOTSETVALUES; 23578b31e54SBarry Smith ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr); 23678b31e54SBarry Smith ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr); 2371eb62cbbSBarry Smith 2382493cbb0SBarry Smith /* determine if any processor has disassembled, if so we must 2392493cbb0SBarry Smith also disassemble ourselfs, in order that we may reassemble. */ 240416022c9SBarry Smith MPI_Allreduce(&aij->assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm); 2412493cbb0SBarry Smith if (aij->assembled && !other_disassembled) { 2422493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2432493cbb0SBarry Smith } 2442493cbb0SBarry Smith 2455e42470aSBarry Smith if (!aij->assembled && mode == FINAL_ASSEMBLY) { 24678b31e54SBarry Smith ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr); 247d6dfbf8fSBarry Smith aij->assembled = 1; 2485e42470aSBarry Smith } 24978b31e54SBarry Smith ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr); 25078b31e54SBarry Smith ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr); 2515e42470aSBarry Smith 2528a729477SBarry Smith return 0; 2538a729477SBarry Smith } 2548a729477SBarry Smith 2552ee70a88SLois Curfman McInnes static int MatZeroEntries_MPIAIJ(Mat A) 2561eb62cbbSBarry Smith { 25744a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 258dbd7a890SLois Curfman McInnes int ierr; 25978b31e54SBarry Smith ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 26078b31e54SBarry Smith ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 2611eb62cbbSBarry Smith return 0; 2621eb62cbbSBarry Smith } 2631eb62cbbSBarry Smith 2641eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the 2651eb62cbbSBarry Smith matrix is square and the column and row owerships are identical. 2661eb62cbbSBarry Smith This is a BUG. The only way to fix it seems to be to access 2671eb62cbbSBarry Smith aij->A and aij->B directly and not through the MatZeroRows() 2681eb62cbbSBarry Smith routine. 2691eb62cbbSBarry Smith */ 27044a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag) 2711eb62cbbSBarry Smith { 27244a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 2731eb62cbbSBarry Smith int i,ierr,N, *rows,*owners = l->rowners,numtids = l->numtids; 2746abc6512SBarry Smith int *procs,*nprocs,j,found,idx,nsends,*work; 2751eb62cbbSBarry Smith int nmax,*svalues,*starts,*owner,nrecvs,mytid = l->mytid; 2765392566eSBarry Smith int *rvalues,tag = A->tag,count,base,slen,n,*source; 277d6dfbf8fSBarry Smith int *lens,imdex,*lrows,*values; 278d6dfbf8fSBarry Smith MPI_Comm comm = A->comm; 2791eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 2801eb62cbbSBarry Smith MPI_Status recv_status,*send_status; 2811eb62cbbSBarry Smith IS istmp; 2821eb62cbbSBarry Smith 283416022c9SBarry Smith if (!l->assembled) SETERRQ(1,"MatZeroRows_MPIAIJ:Must assemble matrix first"); 28478b31e54SBarry Smith ierr = ISGetLocalSize(is,&N); CHKERRQ(ierr); 28578b31e54SBarry Smith ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 2861eb62cbbSBarry Smith 2871eb62cbbSBarry Smith /* first count number of contributors to each processor */ 28878b31e54SBarry Smith nprocs = (int *) PETSCMALLOC( 2*numtids*sizeof(int) ); CHKPTRQ(nprocs); 289416022c9SBarry Smith PetscZero(nprocs,2*numtids*sizeof(int)); procs = nprocs + numtids; 29078b31e54SBarry Smith owner = (int *) PETSCMALLOC((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 2911eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 2921eb62cbbSBarry Smith idx = rows[i]; 2931eb62cbbSBarry Smith found = 0; 2941eb62cbbSBarry Smith for ( j=0; j<numtids; j++ ) { 2951eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 2961eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 2971eb62cbbSBarry Smith } 2981eb62cbbSBarry Smith } 299bbb6d6a8SBarry Smith if (!found) SETERRQ(1,"MatZeroRows_MPIAIJ:Index out of range"); 3001eb62cbbSBarry Smith } 3011eb62cbbSBarry Smith nsends = 0; for ( i=0; i<numtids; i++ ) { nsends += procs[i];} 3021eb62cbbSBarry Smith 3031eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 30478b31e54SBarry Smith work = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(work); 305*d65a2f8fSBarry Smith MPI_Allreduce( procs, work,numtids,MPI_INT,MPI_SUM,comm); 3061eb62cbbSBarry Smith nrecvs = work[mytid]; 307*d65a2f8fSBarry Smith MPI_Allreduce( nprocs, work,numtids,MPI_INT,MPI_MAX,comm); 3081eb62cbbSBarry Smith nmax = work[mytid]; 30978b31e54SBarry Smith PETSCFREE(work); 3101eb62cbbSBarry Smith 3111eb62cbbSBarry Smith /* post receives: */ 31278b31e54SBarry Smith rvalues = (int *) PETSCMALLOC((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 31378b31e54SBarry Smith CHKPTRQ(rvalues); 31478b31e54SBarry Smith recv_waits = (MPI_Request *) PETSCMALLOC((nrecvs+1)*sizeof(MPI_Request)); 31578b31e54SBarry Smith CHKPTRQ(recv_waits); 3161eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 317416022c9SBarry Smith MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 3181eb62cbbSBarry Smith } 3191eb62cbbSBarry Smith 3201eb62cbbSBarry Smith /* do sends: 3211eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 3221eb62cbbSBarry Smith the ith processor 3231eb62cbbSBarry Smith */ 32478b31e54SBarry Smith svalues = (int *) PETSCMALLOC( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 32578b31e54SBarry Smith send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request)); 32678b31e54SBarry Smith CHKPTRQ(send_waits); 32778b31e54SBarry Smith starts = (int *) PETSCMALLOC( (numtids+1)*sizeof(int) ); CHKPTRQ(starts); 3281eb62cbbSBarry Smith starts[0] = 0; 3291eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3301eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3311eb62cbbSBarry Smith svalues[starts[owner[i]]++] = rows[i]; 3321eb62cbbSBarry Smith } 3331eb62cbbSBarry Smith ISRestoreIndices(is,&rows); 3341eb62cbbSBarry Smith 3351eb62cbbSBarry Smith starts[0] = 0; 3361eb62cbbSBarry Smith for ( i=1; i<numtids+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3371eb62cbbSBarry Smith count = 0; 3381eb62cbbSBarry Smith for ( i=0; i<numtids; i++ ) { 3391eb62cbbSBarry Smith if (procs[i]) { 340416022c9SBarry Smith MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++); 3411eb62cbbSBarry Smith } 3421eb62cbbSBarry Smith } 34378b31e54SBarry Smith PETSCFREE(starts); 3441eb62cbbSBarry Smith 3451eb62cbbSBarry Smith base = owners[mytid]; 3461eb62cbbSBarry Smith 3471eb62cbbSBarry Smith /* wait on receives */ 34878b31e54SBarry Smith lens = (int *) PETSCMALLOC( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 3491eb62cbbSBarry Smith source = lens + nrecvs; 3501eb62cbbSBarry Smith count = nrecvs; slen = 0; 3511eb62cbbSBarry Smith while (count) { 352d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 3531eb62cbbSBarry Smith /* unpack receives into our local space */ 3541eb62cbbSBarry Smith MPI_Get_count(&recv_status,MPI_INT,&n); 355d6dfbf8fSBarry Smith source[imdex] = recv_status.MPI_SOURCE; 356d6dfbf8fSBarry Smith lens[imdex] = n; 3571eb62cbbSBarry Smith slen += n; 3581eb62cbbSBarry Smith count--; 3591eb62cbbSBarry Smith } 36078b31e54SBarry Smith PETSCFREE(recv_waits); 3611eb62cbbSBarry Smith 3621eb62cbbSBarry Smith /* move the data into the send scatter */ 36378b31e54SBarry Smith lrows = (int *) PETSCMALLOC( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 3641eb62cbbSBarry Smith count = 0; 3651eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 3661eb62cbbSBarry Smith values = rvalues + i*nmax; 3671eb62cbbSBarry Smith for ( j=0; j<lens[i]; j++ ) { 3681eb62cbbSBarry Smith lrows[count++] = values[j] - base; 3691eb62cbbSBarry Smith } 3701eb62cbbSBarry Smith } 37178b31e54SBarry Smith PETSCFREE(rvalues); PETSCFREE(lens); 37278b31e54SBarry Smith PETSCFREE(owner); PETSCFREE(nprocs); 3731eb62cbbSBarry Smith 3741eb62cbbSBarry Smith /* actually zap the local rows */ 375416022c9SBarry Smith ierr = ISCreateSeq(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 376464493b3SBarry Smith PLogObjectParent(A,istmp); 377416022c9SBarry Smith PETSCFREE(lrows); 37878b31e54SBarry Smith ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 37978b31e54SBarry Smith ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 38078b31e54SBarry Smith ierr = ISDestroy(istmp); CHKERRQ(ierr); 3811eb62cbbSBarry Smith 3821eb62cbbSBarry Smith /* wait on sends */ 3831eb62cbbSBarry Smith if (nsends) { 38478b31e54SBarry Smith send_status = (MPI_Status *) PETSCMALLOC(nsends*sizeof(MPI_Status)); 38578b31e54SBarry Smith CHKPTRQ(send_status); 3861eb62cbbSBarry Smith MPI_Waitall(nsends,send_waits,send_status); 38778b31e54SBarry Smith PETSCFREE(send_status); 3881eb62cbbSBarry Smith } 38978b31e54SBarry Smith PETSCFREE(send_waits); PETSCFREE(svalues); 3901eb62cbbSBarry Smith 3911eb62cbbSBarry Smith return 0; 3921eb62cbbSBarry Smith } 3931eb62cbbSBarry Smith 394416022c9SBarry Smith static int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy) 3951eb62cbbSBarry Smith { 396416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 3971eb62cbbSBarry Smith int ierr; 398416022c9SBarry Smith 399416022c9SBarry Smith if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix first"); 400416022c9SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTERALL,a->Mvctx);CHKERRQ(ierr); 401416022c9SBarry Smith ierr = MatMult(a->A,xx,yy); CHKERRQ(ierr); 402416022c9SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTERALL,a->Mvctx);CHKERRQ(ierr); 403416022c9SBarry Smith ierr = MatMultAdd(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 4041eb62cbbSBarry Smith return 0; 4051eb62cbbSBarry Smith } 4061eb62cbbSBarry Smith 407416022c9SBarry Smith static int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 408da3a660dSBarry Smith { 409416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 410da3a660dSBarry Smith int ierr; 411416022c9SBarry Smith if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix first"); 412416022c9SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTERALL,a->Mvctx);CHKERRQ(ierr); 413416022c9SBarry Smith ierr = MatMultAdd(a->A,xx,yy,zz); CHKERRQ(ierr); 414416022c9SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTERALL,a->Mvctx);CHKERRQ(ierr); 415416022c9SBarry Smith ierr = MatMultAdd(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 416da3a660dSBarry Smith return 0; 417da3a660dSBarry Smith } 418da3a660dSBarry Smith 419416022c9SBarry Smith static int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy) 420da3a660dSBarry Smith { 421416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 422da3a660dSBarry Smith int ierr; 423da3a660dSBarry Smith 424416022c9SBarry Smith if (!a->assembled) SETERRQ(1,"MatMulTrans_MPIAIJ:must assemble matrix first"); 425da3a660dSBarry Smith /* do nondiagonal part */ 426416022c9SBarry Smith ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr); 427da3a660dSBarry Smith /* send it on its way */ 428416022c9SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES, 429416022c9SBarry Smith (ScatterMode)(SCATTERALL|SCATTERREVERSE),a->Mvctx); CHKERRQ(ierr); 430da3a660dSBarry Smith /* do local part */ 431416022c9SBarry Smith ierr = MatMultTrans(a->A,xx,yy); CHKERRQ(ierr); 432da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 433da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 434da3a660dSBarry Smith /* but is not perhaps always true. */ 435416022c9SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES, 436416022c9SBarry Smith (ScatterMode)(SCATTERALL|SCATTERREVERSE),a->Mvctx); CHKERRQ(ierr); 437da3a660dSBarry Smith return 0; 438da3a660dSBarry Smith } 439da3a660dSBarry Smith 440416022c9SBarry Smith static int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 441da3a660dSBarry Smith { 442416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 443da3a660dSBarry Smith int ierr; 444da3a660dSBarry Smith 445416022c9SBarry Smith if (!a->assembled) SETERRQ(1,"MatMulTransAdd_MPIAIJ:must assemble matrix first"); 446da3a660dSBarry Smith /* do nondiagonal part */ 447416022c9SBarry Smith ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr); 448da3a660dSBarry Smith /* send it on its way */ 449416022c9SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES, 450416022c9SBarry Smith (ScatterMode)(SCATTERALL|SCATTERREVERSE),a->Mvctx); CHKERRQ(ierr); 451da3a660dSBarry Smith /* do local part */ 452416022c9SBarry Smith ierr = MatMultTransAdd(a->A,xx,yy,zz); CHKERRQ(ierr); 453da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 454da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 455da3a660dSBarry Smith /* but is not perhaps always true. */ 456416022c9SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES, 457416022c9SBarry Smith (ScatterMode)(SCATTERALL|SCATTERREVERSE),a->Mvctx); CHKERRQ(ierr); 458da3a660dSBarry Smith return 0; 459da3a660dSBarry Smith } 460da3a660dSBarry Smith 4611eb62cbbSBarry Smith /* 4621eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 4631eb62cbbSBarry Smith diagonal block 4641eb62cbbSBarry Smith */ 465416022c9SBarry Smith static int MatGetDiagonal_MPIAIJ(Mat A,Vec v) 4661eb62cbbSBarry Smith { 467416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 468416022c9SBarry Smith if (!a->assembled) SETERRQ(1,"MatGetDiag_MPIAIJ:must assemble matrix first"); 469416022c9SBarry Smith return MatGetDiagonal(a->A,v); 4701eb62cbbSBarry Smith } 4711eb62cbbSBarry Smith 47244a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj) 4731eb62cbbSBarry Smith { 4741eb62cbbSBarry Smith Mat mat = (Mat) obj; 47544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 4761eb62cbbSBarry Smith int ierr; 477a5a9c739SBarry Smith #if defined(PETSC_LOG) 4786e35fa57SLois Curfman McInnes PLogObjectState(obj,"Rows=%d, Cols=%d",aij->M,aij->N); 479a5a9c739SBarry Smith #endif 48078b31e54SBarry Smith PETSCFREE(aij->rowners); 48178b31e54SBarry Smith ierr = MatDestroy(aij->A); CHKERRQ(ierr); 48278b31e54SBarry Smith ierr = MatDestroy(aij->B); CHKERRQ(ierr); 48378b31e54SBarry Smith if (aij->colmap) PETSCFREE(aij->colmap); 48478b31e54SBarry Smith if (aij->garray) PETSCFREE(aij->garray); 4851eb62cbbSBarry Smith if (aij->lvec) VecDestroy(aij->lvec); 4861eb62cbbSBarry Smith if (aij->Mvctx) VecScatterCtxDestroy(aij->Mvctx); 48778b31e54SBarry Smith PETSCFREE(aij); 488a5a9c739SBarry Smith PLogObjectDestroy(mat); 489a5a9c739SBarry Smith PETSCHEADERDESTROY(mat); 4901eb62cbbSBarry Smith return 0; 4911eb62cbbSBarry Smith } 4927857610eSBarry Smith #include "draw.h" 493b16a3bb1SBarry Smith #include "pinclude/pviewer.h" 494ee50ffe9SBarry Smith 495416022c9SBarry Smith static int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer) 4961eb62cbbSBarry Smith { 497416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 498416022c9SBarry Smith int ierr; 499416022c9SBarry Smith 500416022c9SBarry Smith if (aij->numtids == 1) { 501416022c9SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 502416022c9SBarry Smith } 503416022c9SBarry Smith return 0; 504416022c9SBarry Smith } 505416022c9SBarry Smith 506416022c9SBarry Smith static int MatView_MPIAIJ_ASCIIorDraw(Mat mat,Viewer viewer) 507416022c9SBarry Smith { 50844a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 509dbb450caSBarry Smith Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data; 510416022c9SBarry Smith int ierr, format,shift = C->indexshift; 511d13ab20cSBarry Smith PetscObject vobj = (PetscObject) viewer; 512d636dbe3SBarry Smith FILE *fd; 513416022c9SBarry Smith 514416022c9SBarry Smith if (vobj->type == ASCII_FILE_VIEWER || vobj->type == ASCII_FILES_VIEWER) { 515416022c9SBarry Smith ierr = ViewerFileGetFormat_Private(viewer,&format); 516416022c9SBarry Smith if (format == FILE_FORMAT_INFO) { 517416022c9SBarry Smith return 0; 518416022c9SBarry Smith } 519416022c9SBarry Smith } 520416022c9SBarry Smith 521416022c9SBarry Smith if (vobj->type == ASCII_FILE_VIEWER) { 522d636dbe3SBarry Smith ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr); 5237f813858SBarry Smith MPIU_Seq_begin(mat->comm,1); 524d13ab20cSBarry Smith fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 5251eb62cbbSBarry Smith aij->mytid,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart, 5261eb62cbbSBarry Smith aij->cend); 52778b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 52878b31e54SBarry Smith ierr = MatView(aij->B,viewer); CHKERRQ(ierr); 529d13ab20cSBarry Smith fflush(fd); 5307f813858SBarry Smith MPIU_Seq_end(mat->comm,1); 531d13ab20cSBarry Smith } 532416022c9SBarry Smith else { 53395373324SBarry Smith int numtids = aij->numtids, mytid = aij->mytid; 53495373324SBarry Smith if (numtids == 1) { 53578b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 53695373324SBarry Smith } 53795373324SBarry Smith else { 53895373324SBarry Smith /* assemble the entire matrix onto first processor. */ 53995373324SBarry Smith Mat A; 540ec8511deSBarry Smith Mat_SeqAIJ *Aloc; 5412eb8c8abSBarry Smith int M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct; 54295373324SBarry Smith Scalar *a; 5432ee70a88SLois Curfman McInnes 54495373324SBarry Smith if (!mytid) { 545416022c9SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,0,0,0,&A);CHKERRQ(ierr); 54695373324SBarry Smith } 54795373324SBarry Smith else { 548416022c9SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,0,0,0,&A);CHKERRQ(ierr); 54995373324SBarry Smith } 550464493b3SBarry Smith PLogObjectParent(mat,A); 551416022c9SBarry Smith 55295373324SBarry Smith 55395373324SBarry Smith /* copy over the A part */ 554ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->A->data; 5552ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 55695373324SBarry Smith row = aij->rstart; 557dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;} 55895373324SBarry Smith for ( i=0; i<m; i++ ) { 559416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr); 56095373324SBarry Smith row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 56195373324SBarry Smith } 5622ee70a88SLois Curfman McInnes aj = Aloc->j; 563dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;} 56495373324SBarry Smith 56595373324SBarry Smith /* copy over the B part */ 566ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->B->data; 5672ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 56895373324SBarry Smith row = aij->rstart; 56978b31e54SBarry Smith ct = cols = (int *) PETSCMALLOC( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols); 570dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];} 57195373324SBarry Smith for ( i=0; i<m; i++ ) { 572416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr); 57395373324SBarry Smith row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 57495373324SBarry Smith } 57578b31e54SBarry Smith PETSCFREE(ct); 57678b31e54SBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 57778b31e54SBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 57895373324SBarry Smith if (!mytid) { 57978b31e54SBarry Smith ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 58095373324SBarry Smith } 58178b31e54SBarry Smith ierr = MatDestroy(A); CHKERRQ(ierr); 58295373324SBarry Smith } 58395373324SBarry Smith } 5841eb62cbbSBarry Smith return 0; 5851eb62cbbSBarry Smith } 5861eb62cbbSBarry Smith 587416022c9SBarry Smith static int MatView_MPIAIJ(PetscObject obj,Viewer viewer) 588416022c9SBarry Smith { 589416022c9SBarry Smith Mat mat = (Mat) obj; 590416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 591416022c9SBarry Smith int ierr; 592416022c9SBarry Smith PetscObject vobj = (PetscObject) viewer; 593416022c9SBarry Smith 594416022c9SBarry Smith if (!aij->assembled) SETERRQ(1,"MatView_MPIAIJ:must assemble matrix first"); 595416022c9SBarry Smith if (!viewer) { 596416022c9SBarry Smith viewer = STDOUT_VIEWER_SELF; vobj = (PetscObject) viewer; 597416022c9SBarry Smith } 598416022c9SBarry Smith if (vobj->cookie == DRAW_COOKIE && vobj->type == NULLWINDOW) return 0; 599416022c9SBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILE_VIEWER) { 600416022c9SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr); 601416022c9SBarry Smith } 602416022c9SBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILES_VIEWER) { 603416022c9SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr); 604416022c9SBarry Smith } 605416022c9SBarry Smith else if (vobj->cookie == DRAW_COOKIE) { 606416022c9SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr); 607416022c9SBarry Smith } 608416022c9SBarry Smith else if (vobj->type == BINARY_FILE_VIEWER) { 609416022c9SBarry Smith return MatView_MPIAIJ_Binary(mat,viewer); 610416022c9SBarry Smith } 611416022c9SBarry Smith return 0; 612416022c9SBarry Smith } 613416022c9SBarry Smith 614ec8511deSBarry Smith extern int MatMarkDiag_SeqAIJ(Mat); 6151eb62cbbSBarry Smith /* 6161eb62cbbSBarry Smith This has to provide several versions. 6171eb62cbbSBarry Smith 6181eb62cbbSBarry Smith 1) per sequential 6191eb62cbbSBarry Smith 2) a) use only local smoothing updating outer values only once. 6201eb62cbbSBarry Smith b) local smoothing updating outer values each inner iteration 621d6dfbf8fSBarry Smith 3) color updating out values betwen colors. 6221eb62cbbSBarry Smith */ 623fc76ce87SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag, 624dbb450caSBarry Smith double fshift,int its,Vec xx) 6258a729477SBarry Smith { 62644a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 627d6dfbf8fSBarry Smith Mat AA = mat->A, BB = mat->B; 628ec8511deSBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data; 6296abc6512SBarry Smith Scalar zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts; 6306abc6512SBarry Smith int ierr,*idx, *diag; 631416022c9SBarry Smith int n = mat->n, m = mat->m, i,shift = A->indexshift; 632da3a660dSBarry Smith Vec tt; 6338a729477SBarry Smith 63478b31e54SBarry Smith if (!mat->assembled) SETERRQ(1,"MatRelax_MPIAIJ:must assemble matrix first"); 6351eb62cbbSBarry Smith 636d6dfbf8fSBarry Smith VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls); 637dbb450caSBarry Smith xs = x + shift; /* shift by one for index start of 1 */ 638dbb450caSBarry Smith ls = ls + shift; 639ec8511deSBarry Smith if (!A->diag) {if ((ierr = MatMarkDiag_SeqAIJ(AA))) return ierr;} 640d6dfbf8fSBarry Smith diag = A->diag; 641acb40c82SBarry Smith if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) { 64242f8db3fSLois Curfman McInnes SETERRQ(1,"MatRelax_MPIAIJ:Option not yet supported"); 643acb40c82SBarry Smith } 644da3a660dSBarry Smith if (flag & SOR_EISENSTAT) { 645da3a660dSBarry Smith /* Let A = L + U + D; where L is lower trianglar, 646da3a660dSBarry Smith U is upper triangular, E is diagonal; This routine applies 647da3a660dSBarry Smith 648da3a660dSBarry Smith (L + E)^{-1} A (U + E)^{-1} 649da3a660dSBarry Smith 650da3a660dSBarry Smith to a vector efficiently using Eisenstat's trick. This is for 651da3a660dSBarry Smith the case of SSOR preconditioner, so E is D/omega where omega 652da3a660dSBarry Smith is the relaxation factor. 653da3a660dSBarry Smith */ 65478b31e54SBarry Smith ierr = VecDuplicate(xx,&tt); CHKERRQ(ierr); 655464493b3SBarry Smith PLogObjectParent(matin,tt); 656da3a660dSBarry Smith VecGetArray(tt,&t); 657da3a660dSBarry Smith scale = (2.0/omega) - 1.0; 658da3a660dSBarry Smith /* x = (E + U)^{-1} b */ 659da3a660dSBarry Smith VecSet(&zero,mat->lvec); 660dbb450caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINEUP, 66178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 662da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 663da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 664dbb450caSBarry Smith idx = A->j + diag[i] + !shift; 665dbb450caSBarry Smith v = A->a + diag[i] + !shift; 666da3a660dSBarry Smith sum = b[i]; 667da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 668dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 669da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 670dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 671dbb450caSBarry Smith v = B->a + B->i[i] + shift; 672da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 673da3a660dSBarry Smith x[i] = omega*(sum/d); 674da3a660dSBarry Smith } 675dbb450caSBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINEUP, 67678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 677da3a660dSBarry Smith 678da3a660dSBarry Smith /* t = b - (2*E - D)x */ 679da3a660dSBarry Smith v = A->a; 680dbb450caSBarry Smith for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ + shift])*x[i]; } 681da3a660dSBarry Smith 682da3a660dSBarry Smith /* t = (E + L)^{-1}t */ 683dbb450caSBarry Smith ts = t + shift; /* shifted by one for index start of a or mat->j*/ 684da3a660dSBarry Smith diag = A->diag; 685da3a660dSBarry Smith VecSet(&zero,mat->lvec); 686dbb450caSBarry Smith ierr = VecPipelineBegin(tt,mat->lvec,INSERT_VALUES,PIPELINEDOWN, 68778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 688da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 689da3a660dSBarry Smith n = diag[i] - A->i[i]; 690dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 691dbb450caSBarry Smith v = A->a + A->i[i] + shift; 692da3a660dSBarry Smith sum = t[i]; 693da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ts,v,idx,n); 694dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 695da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 696dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 697dbb450caSBarry Smith v = B->a + B->i[i] + shift; 698da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 699da3a660dSBarry Smith t[i] = omega*(sum/d); 700da3a660dSBarry Smith } 701dbb450caSBarry Smith ierr = VecPipelineEnd(tt,mat->lvec,INSERT_VALUES,PIPELINEDOWN, 70278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 703da3a660dSBarry Smith /* x = x + t */ 704da3a660dSBarry Smith for ( i=0; i<m; i++ ) { x[i] += t[i]; } 705da3a660dSBarry Smith VecDestroy(tt); 706da3a660dSBarry Smith return 0; 707da3a660dSBarry Smith } 708da3a660dSBarry Smith 7091eb62cbbSBarry Smith 710d6dfbf8fSBarry Smith if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){ 711da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 712da3a660dSBarry Smith VecSet(&zero,mat->lvec); VecSet(&zero,xx); 713da3a660dSBarry Smith } 714da3a660dSBarry Smith else { 715dbb450caSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTERUP,mat->Mvctx); 71678b31e54SBarry Smith CHKERRQ(ierr); 717dbb450caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTERUP,mat->Mvctx); 71878b31e54SBarry Smith CHKERRQ(ierr); 719da3a660dSBarry Smith } 720d6dfbf8fSBarry Smith while (its--) { 721d6dfbf8fSBarry Smith /* go down through the rows */ 722dbb450caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINEDOWN, 72378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 724d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 725d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 726dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 727dbb450caSBarry Smith v = A->a + A->i[i] + shift; 728d6dfbf8fSBarry Smith sum = b[i]; 729d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 730dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 731d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 732dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 733dbb450caSBarry Smith v = B->a + B->i[i] + shift; 734d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 735d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 736d6dfbf8fSBarry Smith } 737dbb450caSBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINEDOWN, 73878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 739d6dfbf8fSBarry Smith /* come up through the rows */ 740dbb450caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINEUP, 74178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 742d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 743d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 744dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 745dbb450caSBarry Smith v = A->a + A->i[i] + shift; 746d6dfbf8fSBarry Smith sum = b[i]; 747d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 748dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 749d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 750dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 751dbb450caSBarry Smith v = B->a + B->i[i] + shift; 752d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 753d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 754d6dfbf8fSBarry Smith } 755dbb450caSBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINEUP, 75678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 757d6dfbf8fSBarry Smith } 758d6dfbf8fSBarry Smith } 759d6dfbf8fSBarry Smith else if (flag & SOR_FORWARD_SWEEP){ 760da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 761da3a660dSBarry Smith VecSet(&zero,mat->lvec); 762dbb450caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINEDOWN, 76378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 764da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 765da3a660dSBarry Smith n = diag[i] - A->i[i]; 766dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 767dbb450caSBarry Smith v = A->a + A->i[i] + shift; 768da3a660dSBarry Smith sum = b[i]; 769da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 770dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 771da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 772dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 773dbb450caSBarry Smith v = B->a + B->i[i] + shift; 774da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 775da3a660dSBarry Smith x[i] = omega*(sum/d); 776da3a660dSBarry Smith } 777dbb450caSBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINEDOWN, 77878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 779da3a660dSBarry Smith its--; 780da3a660dSBarry Smith } 781d6dfbf8fSBarry Smith while (its--) { 782dbb450caSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTERUP,mat->Mvctx); 78378b31e54SBarry Smith CHKERRQ(ierr); 784dbb450caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTERUP,mat->Mvctx); 78578b31e54SBarry Smith CHKERRQ(ierr); 786dbb450caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINEDOWN, 78778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 788d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 789d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 790dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 791dbb450caSBarry Smith v = A->a + A->i[i] + shift; 792d6dfbf8fSBarry Smith sum = b[i]; 793d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 794dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 795d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 796dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 797dbb450caSBarry Smith v = B->a + B->i[i] + shift; 798d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 799d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 800d6dfbf8fSBarry Smith } 801dbb450caSBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINEDOWN, 80278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 803d6dfbf8fSBarry Smith } 804d6dfbf8fSBarry Smith } 805d6dfbf8fSBarry Smith else if (flag & SOR_BACKWARD_SWEEP){ 806da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 807da3a660dSBarry Smith VecSet(&zero,mat->lvec); 808dbb450caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINEUP, 80978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 810da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 811da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 812dbb450caSBarry Smith idx = A->j + diag[i] + !shift; 813dbb450caSBarry Smith v = A->a + diag[i] + !shift; 814da3a660dSBarry Smith sum = b[i]; 815da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 816dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 817da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 818dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 819dbb450caSBarry Smith v = B->a + B->i[i] + shift; 820da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 821da3a660dSBarry Smith x[i] = omega*(sum/d); 822da3a660dSBarry Smith } 823dbb450caSBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINEUP, 82478b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 825da3a660dSBarry Smith its--; 826da3a660dSBarry Smith } 827d6dfbf8fSBarry Smith while (its--) { 828dbb450caSBarry Smith ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTERDOWN, 82978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 830dbb450caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTERDOWN, 83178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 832dbb450caSBarry Smith ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINEUP, 83378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 834d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 835d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 836dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 837dbb450caSBarry Smith v = A->a + A->i[i] + shift; 838d6dfbf8fSBarry Smith sum = b[i]; 839d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 840dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 841d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 842dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 843dbb450caSBarry Smith v = B->a + B->i[i] + shift; 844d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 845d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 846d6dfbf8fSBarry Smith } 847dbb450caSBarry Smith ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINEUP, 84878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 849d6dfbf8fSBarry Smith } 850d6dfbf8fSBarry Smith } 851d6dfbf8fSBarry Smith else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 852da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 853dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 854da3a660dSBarry Smith } 855dbb450caSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTERALL,mat->Mvctx); 85678b31e54SBarry Smith CHKERRQ(ierr); 857dbb450caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTERALL,mat->Mvctx); 85878b31e54SBarry Smith CHKERRQ(ierr); 859d6dfbf8fSBarry Smith while (its--) { 860d6dfbf8fSBarry Smith /* go down through the rows */ 861d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 862d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 863dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 864dbb450caSBarry Smith v = A->a + A->i[i] + shift; 865d6dfbf8fSBarry Smith sum = b[i]; 866d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 867dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 868d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 869dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 870dbb450caSBarry Smith v = B->a + B->i[i] + shift; 871d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 872d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 873d6dfbf8fSBarry Smith } 874d6dfbf8fSBarry Smith /* come up through the rows */ 875d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 876d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 877dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 878dbb450caSBarry Smith v = A->a + A->i[i] + shift; 879d6dfbf8fSBarry Smith sum = b[i]; 880d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 881dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 882d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 883dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 884dbb450caSBarry Smith v = B->a + B->i[i] + shift; 885d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 886d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 887d6dfbf8fSBarry Smith } 888d6dfbf8fSBarry Smith } 889d6dfbf8fSBarry Smith } 890d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 891da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 892dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 893da3a660dSBarry Smith } 894dbb450caSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTERALL,mat->Mvctx); 89578b31e54SBarry Smith CHKERRQ(ierr); 896dbb450caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTERALL,mat->Mvctx); 89778b31e54SBarry Smith CHKERRQ(ierr); 898d6dfbf8fSBarry Smith while (its--) { 899d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 900d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 901dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 902dbb450caSBarry Smith v = A->a + A->i[i] + shift; 903d6dfbf8fSBarry Smith sum = b[i]; 904d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 905dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 906d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 907dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 908dbb450caSBarry Smith v = B->a + B->i[i] + shift; 909d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 910d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 911d6dfbf8fSBarry Smith } 912d6dfbf8fSBarry Smith } 913d6dfbf8fSBarry Smith } 914d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 915da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 916dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 917da3a660dSBarry Smith } 918dbb450caSBarry Smith ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTERALL, 91978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 920dbb450caSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTERALL, 92178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 922d6dfbf8fSBarry Smith while (its--) { 923d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 924d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 925dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 926dbb450caSBarry Smith v = A->a + A->i[i] + shift; 927d6dfbf8fSBarry Smith sum = b[i]; 928d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 929dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 930d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 931dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 932dbb450caSBarry Smith v = B->a + B->i[i] + shift; 933d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 934d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 935d6dfbf8fSBarry Smith } 936d6dfbf8fSBarry Smith } 937d6dfbf8fSBarry Smith } 9388a729477SBarry Smith return 0; 9398a729477SBarry Smith } 940a66be287SLois Curfman McInnes 941fc76ce87SLois Curfman McInnes static int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,int *nz, 942fc76ce87SLois Curfman McInnes int *nzalloc,int *mem) 943a66be287SLois Curfman McInnes { 944a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 945a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 946a66be287SLois Curfman McInnes int ierr, isend[3], irecv[3], nzA, nzallocA, memA; 947a66be287SLois Curfman McInnes 94878b31e54SBarry Smith ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr); 94978b31e54SBarry Smith ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr); 950a66be287SLois Curfman McInnes isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA; 951a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 952a66be287SLois Curfman McInnes *nz = isend[0]; *nzalloc = isend[1]; *mem = isend[2]; 953a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 954*d65a2f8fSBarry Smith MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_MAX,matin->comm); 955a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 956a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 957*d65a2f8fSBarry Smith MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_SUM,matin->comm); 958a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 959a66be287SLois Curfman McInnes } 960a66be287SLois Curfman McInnes return 0; 961a66be287SLois Curfman McInnes } 962a66be287SLois Curfman McInnes 963299609e3SLois Curfman McInnes extern int MatLUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,Mat*); 964299609e3SLois Curfman McInnes extern int MatLUFactorNumeric_MPIAIJ(Mat,Mat*); 965299609e3SLois Curfman McInnes extern int MatLUFactor_MPIAIJ(Mat,IS,IS,double); 966299609e3SLois Curfman McInnes extern int MatILUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,int,Mat *); 967299609e3SLois Curfman McInnes extern int MatSolve_MPIAIJ(Mat,Vec,Vec); 968299609e3SLois Curfman McInnes extern int MatSolveAdd_MPIAIJ(Mat,Vec,Vec,Vec); 969299609e3SLois Curfman McInnes extern int MatSolveTrans_MPIAIJ(Mat,Vec,Vec); 970299609e3SLois Curfman McInnes extern int MatSolveTransAdd_MPIAIJ(Mat,Vec,Vec,Vec); 971299609e3SLois Curfman McInnes 972416022c9SBarry Smith static int MatSetOption_MPIAIJ(Mat A,MatOption op) 973c74985f6SBarry Smith { 974416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) A->data; 975c74985f6SBarry Smith 976c74985f6SBarry Smith if (op == NO_NEW_NONZERO_LOCATIONS) { 977c74985f6SBarry Smith MatSetOption(aij->A,op); 978c74985f6SBarry Smith MatSetOption(aij->B,op); 979c74985f6SBarry Smith } 980c74985f6SBarry Smith else if (op == YES_NEW_NONZERO_LOCATIONS) { 981c74985f6SBarry Smith MatSetOption(aij->A,op); 982c74985f6SBarry Smith MatSetOption(aij->B,op); 983c74985f6SBarry Smith } 984*d65a2f8fSBarry Smith else if (op == COLUMNS_SORTED) { 985*d65a2f8fSBarry Smith MatSetOption(aij->A,op); 986*d65a2f8fSBarry Smith MatSetOption(aij->B,op); 987*d65a2f8fSBarry Smith } 988bbb6d6a8SBarry Smith else if (op == COLUMN_ORIENTED) 989bbb6d6a8SBarry Smith SETERRQ(1,"MatSetOption_MPIAIJ:Column oriented not supported"); 990c74985f6SBarry Smith return 0; 991c74985f6SBarry Smith } 992c74985f6SBarry Smith 993d1710a03SLois Curfman McInnes static int MatGetSize_MPIAIJ(Mat matin,int *m,int *n) 994c74985f6SBarry Smith { 99544a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 996c74985f6SBarry Smith *m = mat->M; *n = mat->N; 997c74985f6SBarry Smith return 0; 998c74985f6SBarry Smith } 999c74985f6SBarry Smith 1000d1710a03SLois Curfman McInnes static int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n) 1001c74985f6SBarry Smith { 100244a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1003b7c46309SBarry Smith *m = mat->m; *n = mat->N; 1004c74985f6SBarry Smith return 0; 1005c74985f6SBarry Smith } 1006c74985f6SBarry Smith 1007d1710a03SLois Curfman McInnes static int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n) 1008c74985f6SBarry Smith { 100944a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1010c74985f6SBarry Smith *m = mat->rstart; *n = mat->rend; 1011c74985f6SBarry Smith return 0; 1012c74985f6SBarry Smith } 1013c74985f6SBarry Smith 101439e00950SLois Curfman McInnes static int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 101539e00950SLois Curfman McInnes { 1016154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1017154123eaSLois Curfman McInnes Scalar *vworkA, *vworkB, **pvA, **pvB; 1018154123eaSLois Curfman McInnes int i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart; 1019154123eaSLois Curfman McInnes int nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend; 102039e00950SLois Curfman McInnes 1021416022c9SBarry Smith if (row < rstart || row >= rend) SETERRQ(1,"MatGetRow_MPIAIJ:only local rows") 1022abc0e9e4SLois Curfman McInnes lrow = row - rstart; 102339e00950SLois Curfman McInnes 1024154123eaSLois Curfman McInnes pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1025154123eaSLois Curfman McInnes if (!v) {pvA = 0; pvB = 0;} 1026154123eaSLois Curfman McInnes if (!idx) {pcA = 0; if (!v) pcB = 0;} 102778b31e54SBarry Smith ierr = MatGetRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 102878b31e54SBarry Smith ierr = MatGetRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 1029154123eaSLois Curfman McInnes nztot = nzA + nzB; 1030154123eaSLois Curfman McInnes 1031154123eaSLois Curfman McInnes if (v || idx) { 1032154123eaSLois Curfman McInnes if (nztot) { 1033154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1034299609e3SLois Curfman McInnes int imark; 103548b35521SBarry Smith if (mat->assembled) { 1036154123eaSLois Curfman McInnes for (i=0; i<nzB; i++) cworkB[i] = mat->garray[cworkB[i]]; 103748b35521SBarry Smith } 1038154123eaSLois Curfman McInnes if (v) { 103978b31e54SBarry Smith *v = (Scalar *) PETSCMALLOC( (nztot)*sizeof(Scalar) ); CHKPTRQ(*v); 104039e00950SLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 1041154123eaSLois Curfman McInnes if (cworkB[i] < cstart) (*v)[i] = vworkB[i]; 1042154123eaSLois Curfman McInnes else break; 1043154123eaSLois Curfman McInnes } 1044154123eaSLois Curfman McInnes imark = i; 1045154123eaSLois Curfman McInnes for ( i=0; i<nzA; i++ ) (*v)[imark+i] = vworkA[i]; 1046299609e3SLois Curfman McInnes for ( i=imark; i<nzB; i++ ) (*v)[nzA+i] = vworkB[i]; 1047154123eaSLois Curfman McInnes } 1048154123eaSLois Curfman McInnes if (idx) { 104978b31e54SBarry Smith *idx = (int *) PETSCMALLOC( (nztot)*sizeof(int) ); CHKPTRQ(*idx); 1050154123eaSLois Curfman McInnes for (i=0; i<nzA; i++) cworkA[i] += cstart; 1051154123eaSLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 1052154123eaSLois Curfman McInnes if (cworkB[i] < cstart) (*idx)[i] = cworkB[i]; 1053154123eaSLois Curfman McInnes else break; 1054154123eaSLois Curfman McInnes } 1055154123eaSLois Curfman McInnes imark = i; 1056154123eaSLois Curfman McInnes for ( i=0; i<nzA; i++ ) (*idx)[imark+i] = cworkA[i]; 1057299609e3SLois Curfman McInnes for ( i=imark; i<nzB; i++ ) (*idx)[nzA+i] = cworkB[i]; 105839e00950SLois Curfman McInnes } 105939e00950SLois Curfman McInnes } 106039e00950SLois Curfman McInnes else {*idx = 0; *v=0;} 1061154123eaSLois Curfman McInnes } 106239e00950SLois Curfman McInnes *nz = nztot; 106378b31e54SBarry Smith ierr = MatRestoreRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 106478b31e54SBarry Smith ierr = MatRestoreRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 106539e00950SLois Curfman McInnes return 0; 106639e00950SLois Curfman McInnes } 106739e00950SLois Curfman McInnes 106839e00950SLois Curfman McInnes static int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 106939e00950SLois Curfman McInnes { 107078b31e54SBarry Smith if (idx) PETSCFREE(*idx); 107178b31e54SBarry Smith if (v) PETSCFREE(*v); 107239e00950SLois Curfman McInnes return 0; 107339e00950SLois Curfman McInnes } 107439e00950SLois Curfman McInnes 1075855ac2c5SLois Curfman McInnes static int MatNorm_MPIAIJ(Mat mat,MatNormType type,double *norm) 1076855ac2c5SLois Curfman McInnes { 1077855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1078ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data; 1079416022c9SBarry Smith int ierr, i, j, cstart = aij->cstart,shift = amat->indexshift; 1080416022c9SBarry Smith double sum = 0.0; 108104ca555eSLois Curfman McInnes Scalar *v; 108204ca555eSLois Curfman McInnes 1083416022c9SBarry Smith if (!aij->assembled) SETERRQ(1,"MatNorm_MPIAIJ:Must assemble matrix"); 1084855ac2c5SLois Curfman McInnes if (aij->numtids == 1) { 108514183eadSLois Curfman McInnes ierr = MatNorm(aij->A,type,norm); CHKERRQ(ierr); 108637fa93a5SLois Curfman McInnes } else { 108704ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 108804ca555eSLois Curfman McInnes v = amat->a; 108904ca555eSLois Curfman McInnes for (i=0; i<amat->nz; i++ ) { 109004ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 109104ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 109204ca555eSLois Curfman McInnes #else 109304ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 109404ca555eSLois Curfman McInnes #endif 109504ca555eSLois Curfman McInnes } 109604ca555eSLois Curfman McInnes v = bmat->a; 109704ca555eSLois Curfman McInnes for (i=0; i<bmat->nz; i++ ) { 109804ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 109904ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 110004ca555eSLois Curfman McInnes #else 110104ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 110204ca555eSLois Curfman McInnes #endif 110304ca555eSLois Curfman McInnes } 110404ca555eSLois Curfman McInnes MPI_Allreduce((void*)&sum,(void*)norm,1,MPI_DOUBLE,MPI_SUM,mat->comm); 110504ca555eSLois Curfman McInnes *norm = sqrt(*norm); 110604ca555eSLois Curfman McInnes } 110704ca555eSLois Curfman McInnes else if (type == NORM_1) { /* max column norm */ 110804ca555eSLois Curfman McInnes double *tmp, *tmp2; 110904ca555eSLois Curfman McInnes int *jj, *garray = aij->garray; 111004ca555eSLois Curfman McInnes tmp = (double *) PETSCMALLOC( aij->N*sizeof(double) ); CHKPTRQ(tmp); 111104ca555eSLois Curfman McInnes tmp2 = (double *) PETSCMALLOC( aij->N*sizeof(double) ); CHKPTRQ(tmp2); 1112416022c9SBarry Smith PetscZero(tmp,aij->N*sizeof(double)); 111304ca555eSLois Curfman McInnes *norm = 0.0; 111404ca555eSLois Curfman McInnes v = amat->a; jj = amat->j; 111504ca555eSLois Curfman McInnes for ( j=0; j<amat->nz; j++ ) { 111604ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 1117dbb450caSBarry Smith tmp[cstart + *jj++ + shift] += abs(*v++); 111804ca555eSLois Curfman McInnes #else 1119dbb450caSBarry Smith tmp[cstart + *jj++ + shift] += fabs(*v++); 112004ca555eSLois Curfman McInnes #endif 112104ca555eSLois Curfman McInnes } 112204ca555eSLois Curfman McInnes v = bmat->a; jj = bmat->j; 112304ca555eSLois Curfman McInnes for ( j=0; j<bmat->nz; j++ ) { 112404ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 1125dbb450caSBarry Smith tmp[garray[*jj++ + shift]] += abs(*v++); 112604ca555eSLois Curfman McInnes #else 1127dbb450caSBarry Smith tmp[garray[*jj++ + shift]] += fabs(*v++); 112804ca555eSLois Curfman McInnes #endif 112904ca555eSLois Curfman McInnes } 113004ca555eSLois Curfman McInnes MPI_Allreduce((void*)tmp,(void*)tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm); 113104ca555eSLois Curfman McInnes for ( j=0; j<aij->N; j++ ) { 113204ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 113304ca555eSLois Curfman McInnes } 113404ca555eSLois Curfman McInnes PETSCFREE(tmp); PETSCFREE(tmp2); 113504ca555eSLois Curfman McInnes } 113604ca555eSLois Curfman McInnes else if (type == NORM_INFINITY) { /* max row norm */ 113704ca555eSLois Curfman McInnes double normtemp = 0.0; 113804ca555eSLois Curfman McInnes for ( j=0; j<amat->m; j++ ) { 1139dbb450caSBarry Smith v = amat->a + amat->i[j] + shift; 114004ca555eSLois Curfman McInnes sum = 0.0; 114104ca555eSLois Curfman McInnes for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) { 114204ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 114304ca555eSLois Curfman McInnes sum += abs(*v); v++; 114404ca555eSLois Curfman McInnes #else 114504ca555eSLois Curfman McInnes sum += fabs(*v); v++; 114604ca555eSLois Curfman McInnes #endif 114704ca555eSLois Curfman McInnes } 1148dbb450caSBarry Smith v = bmat->a + bmat->i[j] + shift; 114904ca555eSLois Curfman McInnes for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) { 115004ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 115104ca555eSLois Curfman McInnes sum += abs(*v); v++; 115204ca555eSLois Curfman McInnes #else 115304ca555eSLois Curfman McInnes sum += fabs(*v); v++; 115404ca555eSLois Curfman McInnes #endif 115504ca555eSLois Curfman McInnes } 115604ca555eSLois Curfman McInnes if (sum > normtemp) normtemp = sum; 115704ca555eSLois Curfman McInnes MPI_Allreduce((void*)&normtemp,(void*)norm,1,MPI_DOUBLE,MPI_MAX,mat->comm); 115804ca555eSLois Curfman McInnes } 115904ca555eSLois Curfman McInnes } 116004ca555eSLois Curfman McInnes else { 116104ca555eSLois Curfman McInnes SETERRQ(1,"MatNorm_MPIRow:No support for the two norm"); 116204ca555eSLois Curfman McInnes } 116337fa93a5SLois Curfman McInnes } 1164855ac2c5SLois Curfman McInnes return 0; 1165855ac2c5SLois Curfman McInnes } 1166855ac2c5SLois Curfman McInnes 11670de55854SLois Curfman McInnes static int MatTranspose_MPIAIJ(Mat A,Mat *matout) 1168b7c46309SBarry Smith { 1169b7c46309SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1170dbb450caSBarry Smith Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data; 1171416022c9SBarry Smith int ierr,shift = Aloc->indexshift; 1172416022c9SBarry Smith Mat B; 1173b7c46309SBarry Smith int M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct; 1174b7c46309SBarry Smith Scalar *array; 1175b7c46309SBarry Smith 1176416022c9SBarry Smith if (!matout && M != N) SETERRQ(1,"MatTranspose_MPIAIJ:Square only in-place"); 1177b7c46309SBarry Smith ierr = MatCreateMPIAIJ(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,0,0,0,0,&B); 1178b7c46309SBarry Smith CHKERRQ(ierr); 1179b7c46309SBarry Smith 1180b7c46309SBarry Smith /* copy over the A part */ 1181ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->A->data; 1182b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1183b7c46309SBarry Smith row = a->rstart; 1184dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;} 1185b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1186416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1187b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 1188b7c46309SBarry Smith } 1189b7c46309SBarry Smith aj = Aloc->j; 1190dbb450caSBarry Smith for ( i=0; i<ai[m]|+shift; i++ ) {aj[i] -= a->cstart + shift;} 1191b7c46309SBarry Smith 1192b7c46309SBarry Smith /* copy over the B part */ 1193ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->B->data; 1194b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1195b7c46309SBarry Smith row = a->rstart; 1196dbb450caSBarry Smith ct = cols = (int *) PETSCMALLOC( (ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols); 1197dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];} 1198b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1199416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1200b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 1201b7c46309SBarry Smith } 1202b7c46309SBarry Smith PETSCFREE(ct); 1203b7c46309SBarry Smith ierr = MatAssemblyBegin(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 1204b7c46309SBarry Smith ierr = MatAssemblyEnd(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 12050de55854SLois Curfman McInnes if (matout) { 12060de55854SLois Curfman McInnes *matout = B; 12070de55854SLois Curfman McInnes } else { 12080de55854SLois Curfman McInnes /* This isn't really an in-place transpose .... but free data structures from a */ 12090de55854SLois Curfman McInnes PETSCFREE(a->rowners); 12100de55854SLois Curfman McInnes ierr = MatDestroy(a->A); CHKERRQ(ierr); 12110de55854SLois Curfman McInnes ierr = MatDestroy(a->B); CHKERRQ(ierr); 12120de55854SLois Curfman McInnes if (a->colmap) PETSCFREE(a->colmap); 12130de55854SLois Curfman McInnes if (a->garray) PETSCFREE(a->garray); 12140de55854SLois Curfman McInnes if (a->lvec) VecDestroy(a->lvec); 12150de55854SLois Curfman McInnes if (a->Mvctx) VecScatterCtxDestroy(a->Mvctx); 12160de55854SLois Curfman McInnes PETSCFREE(a); 1217416022c9SBarry Smith PetscMemcpy(A,B,sizeof(struct _Mat)); 12180de55854SLois Curfman McInnes PETSCHEADERDESTROY(B); 12190de55854SLois Curfman McInnes } 1220b7c46309SBarry Smith return 0; 1221b7c46309SBarry Smith } 1222b7c46309SBarry Smith 1223fc76ce87SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MatType,Mat *); 1224ff7509f2SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat,Mat *); 1225d6dfbf8fSBarry Smith 12268a729477SBarry Smith /* -------------------------------------------------------------------*/ 12272ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ, 122839e00950SLois Curfman McInnes MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ, 122944a69424SLois Curfman McInnes MatMult_MPIAIJ,MatMultAdd_MPIAIJ, 123044a69424SLois Curfman McInnes MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ, 1231299609e3SLois Curfman McInnes MatSolve_MPIAIJ,MatSolveAdd_MPIAIJ, 1232299609e3SLois Curfman McInnes MatSolveTrans_MPIAIJ,MatSolveTransAdd_MPIAIJ, 1233299609e3SLois Curfman McInnes MatLUFactor_MPIAIJ,0, 123444a69424SLois Curfman McInnes MatRelax_MPIAIJ, 1235b7c46309SBarry Smith MatTranspose_MPIAIJ, 1236a66be287SLois Curfman McInnes MatGetInfo_MPIAIJ,0, 1237855ac2c5SLois Curfman McInnes MatGetDiagonal_MPIAIJ,0,MatNorm_MPIAIJ, 1238ee50ffe9SBarry Smith MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ, 12391eb62cbbSBarry Smith 0, 1240299609e3SLois Curfman McInnes MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ, 1241299609e3SLois Curfman McInnes MatGetReordering_MPIAIJ, 1242299609e3SLois Curfman McInnes MatLUFactorSymbolic_MPIAIJ,MatLUFactorNumeric_MPIAIJ,0,0, 1243d1710a03SLois Curfman McInnes MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ, 1244299609e3SLois Curfman McInnes MatILUFactorSymbolic_MPIAIJ,0, 1245ff7509f2SBarry Smith 0,0,MatConvert_MPIAIJ,0,0,MatCopyPrivate_MPIAIJ}; 12468a729477SBarry Smith 12478a729477SBarry Smith /*@ 1248ff756334SLois Curfman McInnes MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format 1249ff756334SLois Curfman McInnes (the default parallel PETSc format). 12508a729477SBarry Smith 12518a729477SBarry Smith Input Parameters: 12521eb62cbbSBarry Smith . comm - MPI communicator 12537d3e4905SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 12547d3e4905SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated 12557d3e4905SLois Curfman McInnes if N is given) 12567d3e4905SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 12577d3e4905SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated 12587d3e4905SLois Curfman McInnes if n is given) 1259ab693e5aSLois Curfman McInnes . d_nz - number of nonzeros per row in diagonal portion of local submatrix 1260ff756334SLois Curfman McInnes (same for all local rows) 1261ab693e5aSLois Curfman McInnes . d_nzz - number of nonzeros per row in diagonal portion of local submatrix 1262ab693e5aSLois Curfman McInnes or null (possibly different for each row). You must leave room 1263ab693e5aSLois Curfman McInnes for the diagonal entry even if it is zero. 1264ab693e5aSLois Curfman McInnes . o_nz - number of nonzeros per row in off-diagonal portion of local 1265ab693e5aSLois Curfman McInnes submatrix (same for all local rows). 1266ab693e5aSLois Curfman McInnes . o_nzz - number of nonzeros per row in off-diagonal portion of local 1267ab693e5aSLois Curfman McInnes submatrix or null (possibly different for each row). 12688a729477SBarry Smith 1269ff756334SLois Curfman McInnes Output Parameter: 12708a729477SBarry Smith . newmat - the matrix 12718a729477SBarry Smith 1272ff756334SLois Curfman McInnes Notes: 1273ff756334SLois Curfman McInnes The AIJ format (also called the Yale sparse matrix format or 1274ff756334SLois Curfman McInnes compressed row storage), is fully compatible with standard Fortran 77 1275ff756334SLois Curfman McInnes storage. That is, the stored row and column indices begin at 1276ab693e5aSLois Curfman McInnes one, not zero. See the users manual for further details. 1277ff756334SLois Curfman McInnes 1278ff756334SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 1279ff756334SLois Curfman McInnes (possibly both). 1280ff756334SLois Curfman McInnes 1281e0245417SLois Curfman McInnes Storage Information: 1282e0245417SLois Curfman McInnes For a square global matrix we define each processor's diagonal portion 1283e0245417SLois Curfman McInnes to be its local rows and the corresponding columns (a square submatrix); 1284e0245417SLois Curfman McInnes each processor's off-diagonal portion encompasses the remainder of the 1285e0245417SLois Curfman McInnes local matrix (a rectangular submatrix). 1286e0245417SLois Curfman McInnes 1287e0245417SLois Curfman McInnes The user can specify preallocated storage for the diagonal part of 1288e0245417SLois Curfman McInnes the local submatrix with either d_nz or d_nnz (not both). Set both 1289e0245417SLois Curfman McInnes d_nz and d_nnz to zero for PETSc to control dynamic memory allocation. 1290e0245417SLois Curfman McInnes Likewise, specify preallocated storage for the off-diagonal part of 1291e0245417SLois Curfman McInnes the local submatrix with o_nz or o_nnz (not both). 1292ff756334SLois Curfman McInnes 1293dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel 1294ff756334SLois Curfman McInnes 1295fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues() 12968a729477SBarry Smith @*/ 12971eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N, 12981eb62cbbSBarry Smith int d_nz,int *d_nnz, int o_nz,int *o_nnz,Mat *newmat) 12998a729477SBarry Smith { 13008a729477SBarry Smith Mat mat; 1301416022c9SBarry Smith Mat_MPIAIJ *a; 13026abc6512SBarry Smith int ierr, i,sum[2],work[2]; 1303416022c9SBarry Smith 13048a729477SBarry Smith *newmat = 0; 130544a69424SLois Curfman McInnes PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm); 1306a5a9c739SBarry Smith PLogObjectCreate(mat); 1307416022c9SBarry Smith mat->data = (void *) (a = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(a); 1308416022c9SBarry Smith PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 130944a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 131044a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 13118a729477SBarry Smith mat->factor = 0; 1312d6dfbf8fSBarry Smith 1313416022c9SBarry Smith a->insertmode = NOTSETVALUES; 1314416022c9SBarry Smith MPI_Comm_rank(comm,&a->mytid); 1315416022c9SBarry Smith MPI_Comm_size(comm,&a->numtids); 13161eb62cbbSBarry Smith 1317dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 13181eb62cbbSBarry Smith work[0] = m; work[1] = n; 1319*d65a2f8fSBarry Smith MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm ); 1320dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE) M = sum[0]; 1321dbd7a890SLois Curfman McInnes if (N == PETSC_DECIDE) N = sum[1]; 13221eb62cbbSBarry Smith } 1323416022c9SBarry Smith if (m == PETSC_DECIDE) {m = M/a->numtids + ((M % a->numtids) > a->mytid);} 1324416022c9SBarry Smith if (n == PETSC_DECIDE) {n = N/a->numtids + ((N % a->numtids) > a->mytid);} 1325416022c9SBarry Smith a->m = m; 1326416022c9SBarry Smith a->n = n; 1327416022c9SBarry Smith a->N = N; 1328416022c9SBarry Smith a->M = M; 13291eb62cbbSBarry Smith 13301eb62cbbSBarry Smith /* build local table of row and column ownerships */ 1331416022c9SBarry Smith a->rowners = (int *) PETSCMALLOC(2*(a->numtids+2)*sizeof(int)); CHKPTRQ(a->rowners); 1332416022c9SBarry Smith PLogObjectMemory(mat,2*(a->numtids+2)*sizeof(int)+sizeof(struct _Mat)+ 1333464493b3SBarry Smith sizeof(Mat_MPIAIJ)); 1334416022c9SBarry Smith a->cowners = a->rowners + a->numtids + 1; 1335416022c9SBarry Smith MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm); 1336416022c9SBarry Smith a->rowners[0] = 0; 1337416022c9SBarry Smith for ( i=2; i<=a->numtids; i++ ) { 1338416022c9SBarry Smith a->rowners[i] += a->rowners[i-1]; 13398a729477SBarry Smith } 1340416022c9SBarry Smith a->rstart = a->rowners[a->mytid]; 1341416022c9SBarry Smith a->rend = a->rowners[a->mytid+1]; 1342416022c9SBarry Smith MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm); 1343416022c9SBarry Smith a->cowners[0] = 0; 1344416022c9SBarry Smith for ( i=2; i<=a->numtids; i++ ) { 1345416022c9SBarry Smith a->cowners[i] += a->cowners[i-1]; 13468a729477SBarry Smith } 1347416022c9SBarry Smith a->cstart = a->cowners[a->mytid]; 1348416022c9SBarry Smith a->cend = a->cowners[a->mytid+1]; 13498a729477SBarry Smith 1350416022c9SBarry Smith ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,n,d_nz,d_nnz,&a->A); CHKERRQ(ierr); 1351416022c9SBarry Smith PLogObjectParent(mat,a->A); 1352416022c9SBarry Smith ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,N,o_nz,o_nnz,&a->B); CHKERRQ(ierr); 1353416022c9SBarry Smith PLogObjectParent(mat,a->B); 13548a729477SBarry Smith 13551eb62cbbSBarry Smith /* build cache for off array entries formed */ 1356416022c9SBarry Smith ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr); 1357416022c9SBarry Smith a->colmap = 0; 1358416022c9SBarry Smith a->garray = 0; 13598a729477SBarry Smith 13601eb62cbbSBarry Smith /* stuff used for matrix vector multiply */ 1361416022c9SBarry Smith a->lvec = 0; 1362416022c9SBarry Smith a->Mvctx = 0; 1363416022c9SBarry Smith a->assembled = 0; 13648a729477SBarry Smith 1365d6dfbf8fSBarry Smith *newmat = mat; 1366d6dfbf8fSBarry Smith return 0; 1367d6dfbf8fSBarry Smith } 1368c74985f6SBarry Smith 1369ff7509f2SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat matin,Mat *newmat) 1370d6dfbf8fSBarry Smith { 1371d6dfbf8fSBarry Smith Mat mat; 1372416022c9SBarry Smith Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data; 13732ee70a88SLois Curfman McInnes int ierr, len; 1374d6dfbf8fSBarry Smith 1375416022c9SBarry Smith if (!oldmat->assembled) SETERRQ(1,"MatCopyPrivate_MPIAIJ:Must assemble matrix"); 1376416022c9SBarry Smith *newmat = 0; 137744a69424SLois Curfman McInnes PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm); 1378a5a9c739SBarry Smith PLogObjectCreate(mat); 1379416022c9SBarry Smith mat->data = (void *) (a = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(a); 1380416022c9SBarry Smith PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 138144a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 138244a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 1383d6dfbf8fSBarry Smith mat->factor = matin->factor; 1384d6dfbf8fSBarry Smith 1385416022c9SBarry Smith a->m = oldmat->m; 1386416022c9SBarry Smith a->n = oldmat->n; 1387416022c9SBarry Smith a->M = oldmat->M; 1388416022c9SBarry Smith a->N = oldmat->N; 1389d6dfbf8fSBarry Smith 1390416022c9SBarry Smith a->assembled = 1; 1391416022c9SBarry Smith a->rstart = oldmat->rstart; 1392416022c9SBarry Smith a->rend = oldmat->rend; 1393416022c9SBarry Smith a->cstart = oldmat->cstart; 1394416022c9SBarry Smith a->cend = oldmat->cend; 1395416022c9SBarry Smith a->numtids = oldmat->numtids; 1396416022c9SBarry Smith a->mytid = oldmat->mytid; 1397416022c9SBarry Smith a->insertmode = NOTSETVALUES; 1398d6dfbf8fSBarry Smith 1399416022c9SBarry Smith a->rowners = (int *) PETSCMALLOC((a->numtids+1)*sizeof(int));CHKPTRQ(a->rowners); 1400416022c9SBarry Smith PLogObjectMemory(mat,(a->numtids+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ)); 1401416022c9SBarry Smith PetscMemcpy(a->rowners,oldmat->rowners,(a->numtids+1)*sizeof(int)); 1402416022c9SBarry Smith ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 14032ee70a88SLois Curfman McInnes if (oldmat->colmap) { 1404416022c9SBarry Smith a->colmap = (int *) PETSCMALLOC( (a->N)*sizeof(int) );CHKPTRQ(a->colmap); 1405416022c9SBarry Smith PLogObjectMemory(mat,(a->N)*sizeof(int)); 1406416022c9SBarry Smith PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int)); 1407416022c9SBarry Smith } else a->colmap = 0; 1408ec8511deSBarry Smith if (oldmat->garray && (len = ((Mat_SeqAIJ *) (oldmat->B->data))->n)) { 1409416022c9SBarry Smith a->garray = (int *) PETSCMALLOC(len*sizeof(int) ); CHKPTRQ(a->garray); 1410464493b3SBarry Smith PLogObjectMemory(mat,len*sizeof(int)); 1411416022c9SBarry Smith PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 1412416022c9SBarry Smith } else a->garray = 0; 1413d6dfbf8fSBarry Smith 1414416022c9SBarry Smith ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 1415416022c9SBarry Smith PLogObjectParent(mat,a->lvec); 1416416022c9SBarry Smith ierr = VecScatterCtxCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 1417416022c9SBarry Smith PLogObjectParent(mat,a->Mvctx); 1418416022c9SBarry Smith ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 1419416022c9SBarry Smith PLogObjectParent(mat,a->A); 1420416022c9SBarry Smith ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 1421416022c9SBarry Smith PLogObjectParent(mat,a->B); 14228a729477SBarry Smith *newmat = mat; 14238a729477SBarry Smith return 0; 14248a729477SBarry Smith } 1425416022c9SBarry Smith 1426416022c9SBarry Smith #include "sysio.h" 1427416022c9SBarry Smith 1428416022c9SBarry Smith int MatLoad_MPIAIJ(Viewer bview,MatType type,Mat *newmat) 1429416022c9SBarry Smith { 1430*d65a2f8fSBarry Smith Mat A; 1431416022c9SBarry Smith int i, nz, ierr, j,rstart, rend, fd; 1432*d65a2f8fSBarry Smith Scalar *vals,*svals; 1433416022c9SBarry Smith PetscObject vobj = (PetscObject) bview; 1434416022c9SBarry Smith MPI_Comm comm = vobj->comm; 1435416022c9SBarry Smith MPI_Status status; 1436416022c9SBarry Smith int header[4],mytid,numtid,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 1437*d65a2f8fSBarry Smith int *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols; 1438*d65a2f8fSBarry Smith int tag = ((PetscObject)bview)->tag; 1439416022c9SBarry Smith 1440416022c9SBarry Smith MPI_Comm_size(comm,&numtid); MPI_Comm_rank(comm,&mytid); 1441416022c9SBarry Smith if (!mytid) { 1442416022c9SBarry Smith ierr = ViewerFileGetDescriptor_Private(bview,&fd); CHKERRQ(ierr); 1443416022c9SBarry Smith ierr = SYRead(fd,(char *)header,4,SYINT); CHKERRQ(ierr); 1444416022c9SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIAIJ: not matrix object"); 1445416022c9SBarry Smith } 1446416022c9SBarry Smith 1447416022c9SBarry Smith MPI_Bcast(header+1,3,MPI_INT,0,comm); 1448416022c9SBarry Smith M = header[1]; N = header[2]; 1449416022c9SBarry Smith /* determine ownership of all rows */ 1450416022c9SBarry Smith m = M/numtid + ((M % numtid) > mytid); 1451416022c9SBarry Smith rowners = (int *) PETSCMALLOC((numtid+2)*sizeof(int)); CHKPTRQ(rowners); 1452416022c9SBarry Smith MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm); 1453416022c9SBarry Smith rowners[0] = 0; 1454416022c9SBarry Smith for ( i=2; i<=numtid; i++ ) { 1455416022c9SBarry Smith rowners[i] += rowners[i-1]; 1456416022c9SBarry Smith } 1457416022c9SBarry Smith rstart = rowners[mytid]; 1458416022c9SBarry Smith rend = rowners[mytid+1]; 1459416022c9SBarry Smith 1460416022c9SBarry Smith /* distribute row lengths to all processors */ 1461416022c9SBarry Smith ourlens = (int*) PETSCMALLOC( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens); 1462416022c9SBarry Smith offlens = ourlens + (rend-rstart); 1463416022c9SBarry Smith if (!mytid) { 1464416022c9SBarry Smith rowlengths = (int*) PETSCMALLOC( M*sizeof(int) ); CHKPTRQ(rowlengths); 1465416022c9SBarry Smith ierr = SYRead(fd,rowlengths,M,SYINT); CHKERRQ(ierr); 1466416022c9SBarry Smith sndcounts = (int*) PETSCMALLOC( numtid*sizeof(int) ); CHKPTRQ(sndcounts); 1467416022c9SBarry Smith for ( i=0; i<numtid; i++ ) sndcounts[i] = rowners[i+1] - rowners[i]; 1468*d65a2f8fSBarry Smith MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm); 1469416022c9SBarry Smith } 1470416022c9SBarry Smith else { 1471416022c9SBarry Smith MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm); 1472416022c9SBarry Smith } 1473416022c9SBarry Smith 1474416022c9SBarry Smith 1475416022c9SBarry Smith if (!mytid) { 1476416022c9SBarry Smith /* calculate the number of nonzeros on each processor */ 1477416022c9SBarry Smith procsnz = (int*) PETSCMALLOC( numtid*sizeof(int) ); CHKPTRQ(procsnz); 1478416022c9SBarry Smith PetscZero(procsnz,numtid*sizeof(int)); 1479416022c9SBarry Smith for ( i=0; i<numtid; i++ ) { 1480416022c9SBarry Smith for ( j=rowners[i]; j< rowners[i+1]; j++ ) { 1481416022c9SBarry Smith procsnz[i] += rowlengths[j]; 1482416022c9SBarry Smith } 1483416022c9SBarry Smith } 1484416022c9SBarry Smith 1485416022c9SBarry Smith /* determine max buffer needed and allocate it */ 1486416022c9SBarry Smith maxnz = 0; 1487416022c9SBarry Smith for ( i=0; i<numtid; i++ ) { 1488416022c9SBarry Smith maxnz = PETSCMAX(maxnz,procsnz[i]); 1489416022c9SBarry Smith } 1490416022c9SBarry Smith cols = (int *) PETSCMALLOC( maxnz*sizeof(int) ); CHKPTRQ(cols); 1491416022c9SBarry Smith 1492416022c9SBarry Smith /* read in my part of the matrix column indices */ 1493416022c9SBarry Smith nz = procsnz[0]; 1494*d65a2f8fSBarry Smith mycols = (int *) PETSCMALLOC( nz*sizeof(int) ); CHKPTRQ(mycols); 1495*d65a2f8fSBarry Smith ierr = SYRead(fd,mycols,nz,SYINT); CHKERRQ(ierr); 1496*d65a2f8fSBarry Smith 1497*d65a2f8fSBarry Smith /* read in every one elses and ship off */ 1498*d65a2f8fSBarry Smith for ( i=1; i<numtid; i++ ) { 1499*d65a2f8fSBarry Smith nz = procsnz[i]; 1500416022c9SBarry Smith ierr = SYRead(fd,cols,nz,SYINT); CHKERRQ(ierr); 1501*d65a2f8fSBarry Smith MPI_Send(cols,nz,MPI_INT,i,tag,comm); 1502*d65a2f8fSBarry Smith } 1503*d65a2f8fSBarry Smith PETSCFREE(cols); 1504416022c9SBarry Smith } 1505416022c9SBarry Smith else { 1506416022c9SBarry Smith /* determine buffer space needed for message */ 1507416022c9SBarry Smith nz = 0; 1508416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1509416022c9SBarry Smith nz += ourlens[i]; 1510416022c9SBarry Smith } 1511*d65a2f8fSBarry Smith mycols = (int*) PETSCMALLOC( nz*sizeof(int) ); CHKPTRQ(mycols); 1512416022c9SBarry Smith 1513416022c9SBarry Smith /* receive message of column indices*/ 1514*d65a2f8fSBarry Smith MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status); 1515416022c9SBarry Smith MPI_Get_count(&status,MPI_INT,&maxnz); 1516416022c9SBarry Smith if (maxnz != nz) SETERRQ(1,"MatLoad_MPIRowbs: something is way wrong"); 1517416022c9SBarry Smith } 1518416022c9SBarry Smith 1519416022c9SBarry Smith /* loop over local rows, determining number of off diagonal entries */ 1520416022c9SBarry Smith PetscZero(offlens,m*sizeof(int)); 1521416022c9SBarry Smith jj = 0; 1522416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1523416022c9SBarry Smith for ( j=0; j<ourlens[i]; j++ ) { 1524*d65a2f8fSBarry Smith if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 1525416022c9SBarry Smith jj++; 1526416022c9SBarry Smith } 1527416022c9SBarry Smith } 1528*d65a2f8fSBarry Smith 1529*d65a2f8fSBarry Smith 1530*d65a2f8fSBarry Smith /* create our matrix */ 1531416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1532416022c9SBarry Smith ourlens[i] -= offlens[i]; 1533416022c9SBarry Smith } 1534*d65a2f8fSBarry Smith if (type == MATMPIAIJ) { 1535*d65a2f8fSBarry Smith ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1536*d65a2f8fSBarry Smith } 1537*d65a2f8fSBarry Smith else if (type == MATMPIROW) { 1538*d65a2f8fSBarry Smith ierr = MatCreateMPIRow(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1539*d65a2f8fSBarry Smith } 1540*d65a2f8fSBarry Smith A = *newmat; 1541*d65a2f8fSBarry Smith MatSetOption(A,COLUMNS_SORTED); 1542*d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1543*d65a2f8fSBarry Smith ourlens[i] += offlens[i]; 1544*d65a2f8fSBarry Smith } 1545416022c9SBarry Smith 1546416022c9SBarry Smith if (!mytid) { 1547416022c9SBarry Smith vals = (Scalar *) PETSCMALLOC( maxnz*sizeof(Scalar) ); CHKPTRQ(vals); 1548416022c9SBarry Smith 1549416022c9SBarry Smith /* read in my part of the matrix numerical values */ 1550416022c9SBarry Smith nz = procsnz[0]; 1551416022c9SBarry Smith ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr); 1552*d65a2f8fSBarry Smith 1553*d65a2f8fSBarry Smith /* insert into matrix */ 1554*d65a2f8fSBarry Smith jj = rstart; 1555*d65a2f8fSBarry Smith smycols = mycols; 1556*d65a2f8fSBarry Smith svals = vals; 1557*d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1558*d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1559*d65a2f8fSBarry Smith smycols += ourlens[i]; 1560*d65a2f8fSBarry Smith svals += ourlens[i]; 1561*d65a2f8fSBarry Smith jj++; 1562416022c9SBarry Smith } 1563416022c9SBarry Smith 1564*d65a2f8fSBarry Smith /* read in other processors and ship out */ 1565416022c9SBarry Smith for ( i=1; i<numtid; i++ ) { 1566416022c9SBarry Smith nz = procsnz[i]; 1567416022c9SBarry Smith ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr); 1568*d65a2f8fSBarry Smith MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm); 1569416022c9SBarry Smith } 1570416022c9SBarry Smith } 1571*d65a2f8fSBarry Smith else { 1572*d65a2f8fSBarry Smith /* receive numeric values */ 1573*d65a2f8fSBarry Smith vals = (Scalar*) PETSCMALLOC( nz*sizeof(Scalar) ); CHKPTRQ(vals); 1574416022c9SBarry Smith 1575*d65a2f8fSBarry Smith /* receive message of values*/ 1576*d65a2f8fSBarry Smith MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status); 1577*d65a2f8fSBarry Smith MPI_Get_count(&status,MPIU_SCALAR,&maxnz); 1578*d65a2f8fSBarry Smith if (maxnz != nz) SETERRQ(1,"MatLoad_MPIRowbs: something is way wrong"); 1579*d65a2f8fSBarry Smith 1580*d65a2f8fSBarry Smith /* insert into matrix */ 1581*d65a2f8fSBarry Smith jj = rstart; 1582*d65a2f8fSBarry Smith smycols = mycols; 1583*d65a2f8fSBarry Smith svals = vals; 1584*d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1585*d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1586*d65a2f8fSBarry Smith smycols += ourlens[i]; 1587*d65a2f8fSBarry Smith svals += ourlens[i]; 1588*d65a2f8fSBarry Smith jj++; 1589*d65a2f8fSBarry Smith } 1590*d65a2f8fSBarry Smith } 1591*d65a2f8fSBarry Smith PETSCFREE(ourlens); PETSCFREE(vals); PETSCFREE(mycols); 1592*d65a2f8fSBarry Smith 1593*d65a2f8fSBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 1594*d65a2f8fSBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 1595416022c9SBarry Smith return 0; 1596416022c9SBarry Smith } 1597