xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision d7e8b82609919f5be22f34483b29990a2bb120b8)
1cb512458SBarry Smith #ifndef lint
2*d7e8b826SBarry Smith static char vcid[] = "$Id: mpiaij.c,v 1.98 1995/11/06 21:31:33 bsmith Exp bsmith $";
3cb512458SBarry Smith #endif
48a729477SBarry Smith 
51eb62cbbSBarry Smith #include "mpiaij.h"
68a729477SBarry Smith #include "vec/vecimpl.h"
7d6dfbf8fSBarry Smith #include "inline/spops.h"
88a729477SBarry Smith 
99e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column
109e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
119e25ed09SBarry Smith storage of the matrix.  This is done in a non scable way since the
129e25ed09SBarry Smith length of colmap equals the global matrix length.
139e25ed09SBarry Smith */
14b7c46309SBarry Smith static int CreateColmap_Private(Mat mat)
159e25ed09SBarry Smith {
1644a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
17ec8511deSBarry Smith   Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data;
18416022c9SBarry Smith   int        n = B->n,i,shift = B->indexshift;
19dbb450caSBarry Smith 
200452661fSBarry Smith   aij->colmap = (int *) PetscMalloc(aij->N*sizeof(int));CHKPTRQ(aij->colmap);
21464493b3SBarry Smith   PLogObjectMemory(mat,aij->N*sizeof(int));
22cddf8d76SBarry Smith   PetscMemzero(aij->colmap,aij->N*sizeof(int));
23dbb450caSBarry Smith   for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i-shift;
249e25ed09SBarry Smith   return 0;
259e25ed09SBarry Smith }
269e25ed09SBarry Smith 
272493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat);
282493cbb0SBarry Smith 
2951c98ccdSLois Curfman McInnes static int MatGetReordering_MPIAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm)
30299609e3SLois Curfman McInnes {
31299609e3SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
32299609e3SLois Curfman McInnes   int ierr;
3317699dbbSLois Curfman McInnes   if (aij->size == 1) {
3451c98ccdSLois Curfman McInnes     ierr = MatGetReordering(aij->A,type,rperm,cperm); CHKERRQ(ierr);
3548d91487SBarry Smith   } else SETERRQ(1,"MatGetReordering_MPIAIJ:not supported in parallel");
36299609e3SLois Curfman McInnes   return 0;
37299609e3SLois Curfman McInnes }
38299609e3SLois Curfman McInnes 
392ee70a88SLois Curfman McInnes static int MatSetValues_MPIAIJ(Mat mat,int m,int *idxm,int n,
401eb62cbbSBarry Smith                                int *idxn,Scalar *v,InsertMode addv)
418a729477SBarry Smith {
4244a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
43dbb450caSBarry Smith   Mat_SeqAIJ *C = (Mat_SeqAIJ*) aij->A->data;
441eb62cbbSBarry Smith   int        ierr,i,j, rstart = aij->rstart, rend = aij->rend;
451eb62cbbSBarry Smith   int        cstart = aij->cstart, cend = aij->cend,row,col;
46dbb450caSBarry Smith   int        shift = C->indexshift;
478a729477SBarry Smith 
4864119d58SLois Curfman McInnes   if (aij->insertmode != NOT_SET_VALUES && aij->insertmode != addv) {
4948d91487SBarry Smith     SETERRQ(1,"MatSetValues_MPIAIJ:Cannot mix inserts and adds");
508a729477SBarry Smith   }
511eb62cbbSBarry Smith   aij->insertmode = addv;
528a729477SBarry Smith   for ( i=0; i<m; i++ ) {
53bbb6d6a8SBarry Smith     if (idxm[i] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative row");
54bbb6d6a8SBarry Smith     if (idxm[i] >= aij->M) SETERRQ(1,"MatSetValues_MPIAIJ:Row too large");
551eb62cbbSBarry Smith     if (idxm[i] >= rstart && idxm[i] < rend) {
561eb62cbbSBarry Smith       row = idxm[i] - rstart;
571eb62cbbSBarry Smith       for ( j=0; j<n; j++ ) {
58bbb6d6a8SBarry Smith         if (idxn[j] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative column");
59bbb6d6a8SBarry Smith         if (idxn[j] >= aij->N) SETERRQ(1,"MatSetValues_MPIAIJ:Col too large");
601eb62cbbSBarry Smith         if (idxn[j] >= cstart && idxn[j] < cend){
611eb62cbbSBarry Smith           col = idxn[j] - cstart;
6278b31e54SBarry Smith           ierr = MatSetValues(aij->A,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr);
631eb62cbbSBarry Smith         }
641eb62cbbSBarry Smith         else {
65d6dfbf8fSBarry Smith           if (aij->assembled) {
66b7c46309SBarry Smith             if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);}
67dbb450caSBarry Smith             col = aij->colmap[idxn[j]] + shift;
68ec8511deSBarry Smith             if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
692493cbb0SBarry Smith               ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
702493cbb0SBarry Smith               col =  idxn[j];
71d6dfbf8fSBarry Smith             }
729e25ed09SBarry Smith           }
739e25ed09SBarry Smith           else col = idxn[j];
7478b31e54SBarry Smith           ierr = MatSetValues(aij->B,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr);
751eb62cbbSBarry Smith         }
761eb62cbbSBarry Smith       }
771eb62cbbSBarry Smith     }
781eb62cbbSBarry Smith     else {
79416022c9SBarry Smith       ierr = StashValues_Private(&aij->stash,idxm[i],n,idxn,v+i*n,addv);CHKERRQ(ierr);
801eb62cbbSBarry Smith     }
818a729477SBarry Smith   }
828a729477SBarry Smith   return 0;
838a729477SBarry Smith }
848a729477SBarry Smith 
85fc76ce87SLois Curfman McInnes static int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode)
868a729477SBarry Smith {
8744a69424SLois Curfman McInnes   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
88d6dfbf8fSBarry Smith   MPI_Comm    comm = mat->comm;
8917699dbbSLois Curfman McInnes   int         size = aij->size, *owners = aij->rowners;
9017699dbbSLois Curfman McInnes   int         rank = aij->rank,tag = mat->tag, *owner,*starts,count,ierr;
911eb62cbbSBarry Smith   MPI_Request *send_waits,*recv_waits;
926abc6512SBarry Smith   int         *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work;
931eb62cbbSBarry Smith   InsertMode  addv;
941eb62cbbSBarry Smith   Scalar      *rvalues,*svalues;
951eb62cbbSBarry Smith 
961eb62cbbSBarry Smith   /* make sure all processors are either in INSERTMODE or ADDMODE */
97d65a2f8fSBarry Smith   MPI_Allreduce(&aij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);
98dbb450caSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
99bbb6d6a8SBarry Smith     SETERRQ(1,"MatAssemblyBegin_MPIAIJ:Some processors inserted others added");
1001eb62cbbSBarry Smith   }
1011eb62cbbSBarry Smith   aij->insertmode = addv; /* in case this processor had no cache */
1021eb62cbbSBarry Smith 
1031eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
1040452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
105cddf8d76SBarry Smith   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
1060452661fSBarry Smith   owner = (int *) PetscMalloc( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner);
1071eb62cbbSBarry Smith   for ( i=0; i<aij->stash.n; i++ ) {
1081eb62cbbSBarry Smith     idx = aij->stash.idx[i];
10917699dbbSLois Curfman McInnes     for ( j=0; j<size; j++ ) {
1101eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
1111eb62cbbSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; break;
1128a729477SBarry Smith       }
1138a729477SBarry Smith     }
1148a729477SBarry Smith   }
11517699dbbSLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
1161eb62cbbSBarry Smith 
1171eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
1180452661fSBarry Smith   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
11917699dbbSLois Curfman McInnes   MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm);
12017699dbbSLois Curfman McInnes   nreceives = work[rank];
12117699dbbSLois Curfman McInnes   MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);
12217699dbbSLois Curfman McInnes   nmax = work[rank];
1230452661fSBarry Smith   PetscFree(work);
1241eb62cbbSBarry Smith 
1251eb62cbbSBarry Smith   /* post receives:
1261eb62cbbSBarry Smith        1) each message will consist of ordered pairs
1271eb62cbbSBarry Smith      (global index,value) we store the global index as a double
128d6dfbf8fSBarry Smith      to simplify the message passing.
1291eb62cbbSBarry Smith        2) since we don't know how long each individual message is we
1301eb62cbbSBarry Smith      allocate the largest needed buffer for each receive. Potentially
1311eb62cbbSBarry Smith      this is a lot of wasted space.
1321eb62cbbSBarry Smith 
1331eb62cbbSBarry Smith 
1341eb62cbbSBarry Smith        This could be done better.
1351eb62cbbSBarry Smith   */
1360452661fSBarry Smith   rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));
13778b31e54SBarry Smith   CHKPTRQ(rvalues);
1380452661fSBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));
13978b31e54SBarry Smith   CHKPTRQ(recv_waits);
1401eb62cbbSBarry Smith   for ( i=0; i<nreceives; i++ ) {
141416022c9SBarry Smith     MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,
1421eb62cbbSBarry Smith               comm,recv_waits+i);
1431eb62cbbSBarry Smith   }
1441eb62cbbSBarry Smith 
1451eb62cbbSBarry Smith   /* do sends:
1461eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
1471eb62cbbSBarry Smith          the ith processor
1481eb62cbbSBarry Smith   */
1490452661fSBarry Smith   svalues = (Scalar *) PetscMalloc(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues);
1500452661fSBarry Smith   send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));
15178b31e54SBarry Smith   CHKPTRQ(send_waits);
1520452661fSBarry Smith   starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts);
1531eb62cbbSBarry Smith   starts[0] = 0;
15417699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
1551eb62cbbSBarry Smith   for ( i=0; i<aij->stash.n; i++ ) {
1561eb62cbbSBarry Smith     svalues[3*starts[owner[i]]]       = (Scalar)  aij->stash.idx[i];
1571eb62cbbSBarry Smith     svalues[3*starts[owner[i]]+1]     = (Scalar)  aij->stash.idy[i];
1581eb62cbbSBarry Smith     svalues[3*(starts[owner[i]]++)+2] =  aij->stash.array[i];
1591eb62cbbSBarry Smith   }
1600452661fSBarry Smith   PetscFree(owner);
1611eb62cbbSBarry Smith   starts[0] = 0;
16217699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
1631eb62cbbSBarry Smith   count = 0;
16417699dbbSLois Curfman McInnes   for ( i=0; i<size; i++ ) {
1651eb62cbbSBarry Smith     if (procs[i]) {
166416022c9SBarry Smith       MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,
1671eb62cbbSBarry Smith                 comm,send_waits+count++);
1681eb62cbbSBarry Smith     }
1691eb62cbbSBarry Smith   }
1700452661fSBarry Smith   PetscFree(starts); PetscFree(nprocs);
1711eb62cbbSBarry Smith 
1721eb62cbbSBarry Smith   /* Free cache space */
17378b31e54SBarry Smith   ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr);
1741eb62cbbSBarry Smith 
1751eb62cbbSBarry Smith   aij->svalues    = svalues;    aij->rvalues    = rvalues;
1761eb62cbbSBarry Smith   aij->nsends     = nsends;     aij->nrecvs     = nreceives;
1771eb62cbbSBarry Smith   aij->send_waits = send_waits; aij->recv_waits = recv_waits;
1781eb62cbbSBarry Smith   aij->rmax       = nmax;
1791eb62cbbSBarry Smith 
1801eb62cbbSBarry Smith   return 0;
1811eb62cbbSBarry Smith }
18244a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat);
1831eb62cbbSBarry Smith 
184fc76ce87SLois Curfman McInnes static int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode)
1851eb62cbbSBarry Smith {
18644a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
187dbb450caSBarry Smith   Mat_SeqAIJ *C = (Mat_SeqAIJ *) aij->A->data;
1881eb62cbbSBarry Smith   MPI_Status  *send_status,recv_status;
189416022c9SBarry Smith   int         imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr;
190416022c9SBarry Smith   int         row,col,other_disassembled,shift = C->indexshift;
1911eb62cbbSBarry Smith   Scalar      *values,val;
1921eb62cbbSBarry Smith   InsertMode  addv = aij->insertmode;
1931eb62cbbSBarry Smith 
1941eb62cbbSBarry Smith   /*  wait on receives */
1951eb62cbbSBarry Smith   while (count) {
196d6dfbf8fSBarry Smith     MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status);
1971eb62cbbSBarry Smith     /* unpack receives into our local space */
198d6dfbf8fSBarry Smith     values = aij->rvalues + 3*imdex*aij->rmax;
199c60448a5SBarry Smith     MPI_Get_count(&recv_status,MPIU_SCALAR,&n);
2001eb62cbbSBarry Smith     n = n/3;
2011eb62cbbSBarry Smith     for ( i=0; i<n; i++ ) {
2021eb62cbbSBarry Smith       row = (int) PETSCREAL(values[3*i]) - aij->rstart;
2031eb62cbbSBarry Smith       col = (int) PETSCREAL(values[3*i+1]);
2041eb62cbbSBarry Smith       val = values[3*i+2];
2051eb62cbbSBarry Smith       if (col >= aij->cstart && col < aij->cend) {
2061eb62cbbSBarry Smith         col -= aij->cstart;
2071eb62cbbSBarry Smith         MatSetValues(aij->A,1,&row,1,&col,&val,addv);
2081eb62cbbSBarry Smith       }
2091eb62cbbSBarry Smith       else {
210d6dfbf8fSBarry Smith         if (aij->assembled) {
211b7c46309SBarry Smith           if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);}
212dbb450caSBarry Smith           col = aij->colmap[col] + shift;
213ec8511deSBarry Smith           if (col < 0  && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
2142493cbb0SBarry Smith             ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
2152493cbb0SBarry Smith             col = (int) PETSCREAL(values[3*i+1]);
216d6dfbf8fSBarry Smith           }
2179e25ed09SBarry Smith         }
2181eb62cbbSBarry Smith         MatSetValues(aij->B,1,&row,1,&col,&val,addv);
2191eb62cbbSBarry Smith       }
2201eb62cbbSBarry Smith     }
2211eb62cbbSBarry Smith     count--;
2221eb62cbbSBarry Smith   }
2230452661fSBarry Smith   PetscFree(aij->recv_waits); PetscFree(aij->rvalues);
2241eb62cbbSBarry Smith 
2251eb62cbbSBarry Smith   /* wait on sends */
2261eb62cbbSBarry Smith   if (aij->nsends) {
2270452661fSBarry Smith     send_status = (MPI_Status *) PetscMalloc(aij->nsends*sizeof(MPI_Status));
22878b31e54SBarry Smith     CHKPTRQ(send_status);
2291eb62cbbSBarry Smith     MPI_Waitall(aij->nsends,aij->send_waits,send_status);
2300452661fSBarry Smith     PetscFree(send_status);
2311eb62cbbSBarry Smith   }
2320452661fSBarry Smith   PetscFree(aij->send_waits); PetscFree(aij->svalues);
2331eb62cbbSBarry Smith 
23464119d58SLois Curfman McInnes   aij->insertmode = NOT_SET_VALUES;
23578b31e54SBarry Smith   ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr);
23678b31e54SBarry Smith   ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr);
2371eb62cbbSBarry Smith 
2382493cbb0SBarry Smith   /* determine if any processor has disassembled, if so we must
2392493cbb0SBarry Smith      also disassemble ourselfs, in order that we may reassemble. */
240416022c9SBarry Smith   MPI_Allreduce(&aij->assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);
2412493cbb0SBarry Smith   if (aij->assembled && !other_disassembled) {
2422493cbb0SBarry Smith     ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
2432493cbb0SBarry Smith   }
2442493cbb0SBarry Smith 
2455e42470aSBarry Smith   if (!aij->assembled && mode == FINAL_ASSEMBLY) {
24678b31e54SBarry Smith     ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr);
247d6dfbf8fSBarry Smith     aij->assembled = 1;
2485e42470aSBarry Smith   }
24978b31e54SBarry Smith   ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr);
25078b31e54SBarry Smith   ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr);
2515e42470aSBarry Smith 
2528a729477SBarry Smith   return 0;
2538a729477SBarry Smith }
2548a729477SBarry Smith 
2552ee70a88SLois Curfman McInnes static int MatZeroEntries_MPIAIJ(Mat A)
2561eb62cbbSBarry Smith {
25744a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data;
258dbd7a890SLois Curfman McInnes   int        ierr;
25978b31e54SBarry Smith   ierr = MatZeroEntries(l->A); CHKERRQ(ierr);
26078b31e54SBarry Smith   ierr = MatZeroEntries(l->B); CHKERRQ(ierr);
2611eb62cbbSBarry Smith   return 0;
2621eb62cbbSBarry Smith }
2631eb62cbbSBarry Smith 
2641eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the
2651eb62cbbSBarry Smith    matrix is square and the column and row owerships are identical.
2661eb62cbbSBarry Smith    This is a BUG. The only way to fix it seems to be to access
2671eb62cbbSBarry Smith    aij->A and aij->B directly and not through the MatZeroRows()
2681eb62cbbSBarry Smith    routine.
2691eb62cbbSBarry Smith */
27044a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag)
2711eb62cbbSBarry Smith {
27244a69424SLois Curfman McInnes   Mat_MPIAIJ     *l = (Mat_MPIAIJ *) A->data;
27317699dbbSLois Curfman McInnes   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
2746abc6512SBarry Smith   int            *procs,*nprocs,j,found,idx,nsends,*work;
27517699dbbSLois Curfman McInnes   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
2765392566eSBarry Smith   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
277d6dfbf8fSBarry Smith   int            *lens,imdex,*lrows,*values;
278d6dfbf8fSBarry Smith   MPI_Comm       comm = A->comm;
2791eb62cbbSBarry Smith   MPI_Request    *send_waits,*recv_waits;
2801eb62cbbSBarry Smith   MPI_Status     recv_status,*send_status;
2811eb62cbbSBarry Smith   IS             istmp;
2821eb62cbbSBarry Smith 
28348d91487SBarry Smith   if (!l->assembled) SETERRQ(1,"MatZeroRows_MPIAIJ:Must assemble matrix");
28478b31e54SBarry Smith   ierr = ISGetLocalSize(is,&N); CHKERRQ(ierr);
28578b31e54SBarry Smith   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
2861eb62cbbSBarry Smith 
2871eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
2880452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
289cddf8d76SBarry Smith   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
2900452661fSBarry Smith   owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/
2911eb62cbbSBarry Smith   for ( i=0; i<N; i++ ) {
2921eb62cbbSBarry Smith     idx = rows[i];
2931eb62cbbSBarry Smith     found = 0;
29417699dbbSLois Curfman McInnes     for ( j=0; j<size; j++ ) {
2951eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
2961eb62cbbSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
2971eb62cbbSBarry Smith       }
2981eb62cbbSBarry Smith     }
299bbb6d6a8SBarry Smith     if (!found) SETERRQ(1,"MatZeroRows_MPIAIJ:Index out of range");
3001eb62cbbSBarry Smith   }
30117699dbbSLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
3021eb62cbbSBarry Smith 
3031eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
3040452661fSBarry Smith   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
30517699dbbSLois Curfman McInnes   MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);
30617699dbbSLois Curfman McInnes   nrecvs = work[rank];
30717699dbbSLois Curfman McInnes   MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);
30817699dbbSLois Curfman McInnes   nmax = work[rank];
3090452661fSBarry Smith   PetscFree(work);
3101eb62cbbSBarry Smith 
3111eb62cbbSBarry Smith   /* post receives:   */
3120452661fSBarry Smith   rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */
31378b31e54SBarry Smith   CHKPTRQ(rvalues);
3140452661fSBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));
31578b31e54SBarry Smith   CHKPTRQ(recv_waits);
3161eb62cbbSBarry Smith   for ( i=0; i<nrecvs; i++ ) {
317416022c9SBarry Smith     MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);
3181eb62cbbSBarry Smith   }
3191eb62cbbSBarry Smith 
3201eb62cbbSBarry Smith   /* do sends:
3211eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
3221eb62cbbSBarry Smith          the ith processor
3231eb62cbbSBarry Smith   */
3240452661fSBarry Smith   svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues);
3250452661fSBarry Smith   send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));
32678b31e54SBarry Smith   CHKPTRQ(send_waits);
3270452661fSBarry Smith   starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts);
3281eb62cbbSBarry Smith   starts[0] = 0;
32917699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3301eb62cbbSBarry Smith   for ( i=0; i<N; i++ ) {
3311eb62cbbSBarry Smith     svalues[starts[owner[i]]++] = rows[i];
3321eb62cbbSBarry Smith   }
3331eb62cbbSBarry Smith   ISRestoreIndices(is,&rows);
3341eb62cbbSBarry Smith 
3351eb62cbbSBarry Smith   starts[0] = 0;
33617699dbbSLois Curfman McInnes   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3371eb62cbbSBarry Smith   count = 0;
33817699dbbSLois Curfman McInnes   for ( i=0; i<size; i++ ) {
3391eb62cbbSBarry Smith     if (procs[i]) {
340416022c9SBarry Smith       MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);
3411eb62cbbSBarry Smith     }
3421eb62cbbSBarry Smith   }
3430452661fSBarry Smith   PetscFree(starts);
3441eb62cbbSBarry Smith 
34517699dbbSLois Curfman McInnes   base = owners[rank];
3461eb62cbbSBarry Smith 
3471eb62cbbSBarry Smith   /*  wait on receives */
3480452661fSBarry Smith   lens   = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens);
3491eb62cbbSBarry Smith   source = lens + nrecvs;
3501eb62cbbSBarry Smith   count  = nrecvs; slen = 0;
3511eb62cbbSBarry Smith   while (count) {
352d6dfbf8fSBarry Smith     MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);
3531eb62cbbSBarry Smith     /* unpack receives into our local space */
3541eb62cbbSBarry Smith     MPI_Get_count(&recv_status,MPI_INT,&n);
355d6dfbf8fSBarry Smith     source[imdex]  = recv_status.MPI_SOURCE;
356d6dfbf8fSBarry Smith     lens[imdex]  = n;
3571eb62cbbSBarry Smith     slen += n;
3581eb62cbbSBarry Smith     count--;
3591eb62cbbSBarry Smith   }
3600452661fSBarry Smith   PetscFree(recv_waits);
3611eb62cbbSBarry Smith 
3621eb62cbbSBarry Smith   /* move the data into the send scatter */
3630452661fSBarry Smith   lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows);
3641eb62cbbSBarry Smith   count = 0;
3651eb62cbbSBarry Smith   for ( i=0; i<nrecvs; i++ ) {
3661eb62cbbSBarry Smith     values = rvalues + i*nmax;
3671eb62cbbSBarry Smith     for ( j=0; j<lens[i]; j++ ) {
3681eb62cbbSBarry Smith       lrows[count++] = values[j] - base;
3691eb62cbbSBarry Smith     }
3701eb62cbbSBarry Smith   }
3710452661fSBarry Smith   PetscFree(rvalues); PetscFree(lens);
3720452661fSBarry Smith   PetscFree(owner); PetscFree(nprocs);
3731eb62cbbSBarry Smith 
3741eb62cbbSBarry Smith   /* actually zap the local rows */
375416022c9SBarry Smith   ierr = ISCreateSeq(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
376464493b3SBarry Smith   PLogObjectParent(A,istmp);
3770452661fSBarry Smith   PetscFree(lrows);
37878b31e54SBarry Smith   ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr);
37978b31e54SBarry Smith   ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr);
38078b31e54SBarry Smith   ierr = ISDestroy(istmp); CHKERRQ(ierr);
3811eb62cbbSBarry Smith 
3821eb62cbbSBarry Smith   /* wait on sends */
3831eb62cbbSBarry Smith   if (nsends) {
3840452661fSBarry Smith     send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));
38578b31e54SBarry Smith     CHKPTRQ(send_status);
3861eb62cbbSBarry Smith     MPI_Waitall(nsends,send_waits,send_status);
3870452661fSBarry Smith     PetscFree(send_status);
3881eb62cbbSBarry Smith   }
3890452661fSBarry Smith   PetscFree(send_waits); PetscFree(svalues);
3901eb62cbbSBarry Smith 
3911eb62cbbSBarry Smith   return 0;
3921eb62cbbSBarry Smith }
3931eb62cbbSBarry Smith 
394416022c9SBarry Smith static int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy)
3951eb62cbbSBarry Smith {
396416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
3971eb62cbbSBarry Smith   int        ierr;
398416022c9SBarry Smith 
39948d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix");
40064119d58SLois Curfman McInnes   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
401416022c9SBarry Smith   ierr = MatMult(a->A,xx,yy); CHKERRQ(ierr);
40264119d58SLois Curfman McInnes   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
403416022c9SBarry Smith   ierr = MatMultAdd(a->B,a->lvec,yy,yy); CHKERRQ(ierr);
4041eb62cbbSBarry Smith   return 0;
4051eb62cbbSBarry Smith }
4061eb62cbbSBarry Smith 
407416022c9SBarry Smith static int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
408da3a660dSBarry Smith {
409416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
410da3a660dSBarry Smith   int        ierr;
41148d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix");
41264119d58SLois Curfman McInnes   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
413416022c9SBarry Smith   ierr = MatMultAdd(a->A,xx,yy,zz); CHKERRQ(ierr);
41464119d58SLois Curfman McInnes   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
415416022c9SBarry Smith   ierr = MatMultAdd(a->B,a->lvec,zz,zz); CHKERRQ(ierr);
416da3a660dSBarry Smith   return 0;
417da3a660dSBarry Smith }
418da3a660dSBarry Smith 
419416022c9SBarry Smith static int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy)
420da3a660dSBarry Smith {
421416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
422da3a660dSBarry Smith   int        ierr;
423da3a660dSBarry Smith 
42448d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMulTrans_MPIAIJ:must assemble matrix");
425da3a660dSBarry Smith   /* do nondiagonal part */
426416022c9SBarry Smith   ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr);
427da3a660dSBarry Smith   /* send it on its way */
428416022c9SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,
42964119d58SLois Curfman McInnes                 (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
430da3a660dSBarry Smith   /* do local part */
431416022c9SBarry Smith   ierr = MatMultTrans(a->A,xx,yy); CHKERRQ(ierr);
432da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
433da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
434da3a660dSBarry Smith   /* but is not perhaps always true. */
435416022c9SBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,
43664119d58SLois Curfman McInnes                   (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
437da3a660dSBarry Smith   return 0;
438da3a660dSBarry Smith }
439da3a660dSBarry Smith 
440416022c9SBarry Smith static int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
441da3a660dSBarry Smith {
442416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
443da3a660dSBarry Smith   int        ierr;
444da3a660dSBarry Smith 
44548d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMulTransAdd_MPIAIJ:must assemble matrix");
446da3a660dSBarry Smith   /* do nondiagonal part */
447416022c9SBarry Smith   ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr);
448da3a660dSBarry Smith   /* send it on its way */
449416022c9SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,
45064119d58SLois Curfman McInnes                  (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
451da3a660dSBarry Smith   /* do local part */
452416022c9SBarry Smith   ierr = MatMultTransAdd(a->A,xx,yy,zz); CHKERRQ(ierr);
453da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
454da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
455da3a660dSBarry Smith   /* but is not perhaps always true. */
456416022c9SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,
45764119d58SLois Curfman McInnes                   (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
458da3a660dSBarry Smith   return 0;
459da3a660dSBarry Smith }
460da3a660dSBarry Smith 
4611eb62cbbSBarry Smith /*
4621eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
4631eb62cbbSBarry Smith    diagonal block
4641eb62cbbSBarry Smith */
465416022c9SBarry Smith static int MatGetDiagonal_MPIAIJ(Mat A,Vec v)
4661eb62cbbSBarry Smith {
467416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
46848d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatGetDiag_MPIAIJ:must assemble matrix");
469416022c9SBarry Smith   return MatGetDiagonal(a->A,v);
4701eb62cbbSBarry Smith }
4711eb62cbbSBarry Smith 
47244a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj)
4731eb62cbbSBarry Smith {
4741eb62cbbSBarry Smith   Mat        mat = (Mat) obj;
47544a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
4761eb62cbbSBarry Smith   int        ierr;
477a5a9c739SBarry Smith #if defined(PETSC_LOG)
4786e35fa57SLois Curfman McInnes   PLogObjectState(obj,"Rows=%d, Cols=%d",aij->M,aij->N);
479a5a9c739SBarry Smith #endif
4800452661fSBarry Smith   PetscFree(aij->rowners);
48178b31e54SBarry Smith   ierr = MatDestroy(aij->A); CHKERRQ(ierr);
48278b31e54SBarry Smith   ierr = MatDestroy(aij->B); CHKERRQ(ierr);
4830452661fSBarry Smith   if (aij->colmap) PetscFree(aij->colmap);
4840452661fSBarry Smith   if (aij->garray) PetscFree(aij->garray);
4851eb62cbbSBarry Smith   if (aij->lvec)   VecDestroy(aij->lvec);
486a56f8943SBarry Smith   if (aij->Mvctx)  VecScatterDestroy(aij->Mvctx);
4870452661fSBarry Smith   PetscFree(aij);
488a5a9c739SBarry Smith   PLogObjectDestroy(mat);
4890452661fSBarry Smith   PetscHeaderDestroy(mat);
4901eb62cbbSBarry Smith   return 0;
4911eb62cbbSBarry Smith }
4927857610eSBarry Smith #include "draw.h"
493b16a3bb1SBarry Smith #include "pinclude/pviewer.h"
494ee50ffe9SBarry Smith 
495416022c9SBarry Smith static int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer)
4961eb62cbbSBarry Smith {
497416022c9SBarry Smith   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
498416022c9SBarry Smith   int         ierr;
499416022c9SBarry Smith 
50017699dbbSLois Curfman McInnes   if (aij->size == 1) {
501416022c9SBarry Smith     ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
502416022c9SBarry Smith   }
503a523beb4SLois Curfman McInnes   else SETERRQ(1,"MatView_MPIAIJ_Binary:Only uniprocessor output supported");
504416022c9SBarry Smith   return 0;
505416022c9SBarry Smith }
506416022c9SBarry Smith 
507*d7e8b826SBarry Smith static int MatView_MPIAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer)
508416022c9SBarry Smith {
50944a69424SLois Curfman McInnes   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
510dbb450caSBarry Smith   Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data;
511a56f8943SBarry Smith   int         ierr, format,shift = C->indexshift,rank;
512d13ab20cSBarry Smith   PetscObject vobj = (PetscObject) viewer;
513d636dbe3SBarry Smith   FILE        *fd;
514416022c9SBarry Smith 
515416022c9SBarry Smith   if (vobj->type == ASCII_FILE_VIEWER || vobj->type == ASCII_FILES_VIEWER) {
516416022c9SBarry Smith     ierr = ViewerFileGetFormat_Private(viewer,&format);
51708480c60SBarry Smith     if (format == FILE_FORMAT_INFO_DETAILED) {
518a56f8943SBarry Smith       int nz,nzalloc,mem;
519a56f8943SBarry Smith       MPI_Comm_rank(mat->comm,&rank);
520a56f8943SBarry Smith       ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr);
521a56f8943SBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&nz,&nzalloc,&mem);
522a56f8943SBarry Smith       MPIU_Seq_begin(mat->comm,1);
523a56f8943SBarry Smith       fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d \n",rank,aij->m,nz,
524a56f8943SBarry Smith                 nzalloc,mem);
52508480c60SBarry Smith       ierr = MatGetInfo(aij->A,MAT_LOCAL,&nz,&nzalloc,&mem);
52608480c60SBarry Smith       fprintf(fd,"[%d] on diagonal nz %d \n",rank,nz);
52708480c60SBarry Smith       ierr = MatGetInfo(aij->B,MAT_LOCAL,&nz,&nzalloc,&mem);
52808480c60SBarry Smith       fprintf(fd,"[%d] off diagonal nz %d \n",rank,nz);
529a56f8943SBarry Smith       fflush(fd);
530a56f8943SBarry Smith       MPIU_Seq_end(mat->comm,1);
531a56f8943SBarry Smith       ierr = VecScatterView(aij->Mvctx,viewer);
532416022c9SBarry Smith       return 0;
533416022c9SBarry Smith     }
53408480c60SBarry Smith     else if (format == FILE_FORMAT_INFO) {
53508480c60SBarry Smith       return 0;
53608480c60SBarry Smith     }
537416022c9SBarry Smith   }
538416022c9SBarry Smith 
539416022c9SBarry Smith   if (vobj->type == ASCII_FILE_VIEWER) {
540d636dbe3SBarry Smith     ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr);
5417f813858SBarry Smith     MPIU_Seq_begin(mat->comm,1);
542d13ab20cSBarry Smith     fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n",
54317699dbbSLois Curfman McInnes            aij->rank,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart,
5441eb62cbbSBarry Smith            aij->cend);
54578b31e54SBarry Smith     ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
54678b31e54SBarry Smith     ierr = MatView(aij->B,viewer); CHKERRQ(ierr);
547d13ab20cSBarry Smith     fflush(fd);
5487f813858SBarry Smith     MPIU_Seq_end(mat->comm,1);
549d13ab20cSBarry Smith   }
550416022c9SBarry Smith   else {
551a56f8943SBarry Smith     int size = aij->size;
552a56f8943SBarry Smith     rank = aij->rank;
55317699dbbSLois Curfman McInnes     if (size == 1) {
55478b31e54SBarry Smith       ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
55595373324SBarry Smith     }
55695373324SBarry Smith     else {
55795373324SBarry Smith       /* assemble the entire matrix onto first processor. */
55895373324SBarry Smith       Mat         A;
559ec8511deSBarry Smith       Mat_SeqAIJ *Aloc;
5602eb8c8abSBarry Smith       int         M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct;
56195373324SBarry Smith       Scalar      *a;
5622ee70a88SLois Curfman McInnes 
56317699dbbSLois Curfman McInnes       if (!rank) {
564416022c9SBarry Smith         ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,0,0,0,&A);CHKERRQ(ierr);
56595373324SBarry Smith       }
56695373324SBarry Smith       else {
567416022c9SBarry Smith         ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,0,0,0,&A);CHKERRQ(ierr);
56895373324SBarry Smith       }
569464493b3SBarry Smith       PLogObjectParent(mat,A);
570416022c9SBarry Smith 
57195373324SBarry Smith 
57295373324SBarry Smith       /* copy over the A part */
573ec8511deSBarry Smith       Aloc = (Mat_SeqAIJ*) aij->A->data;
5742ee70a88SLois Curfman McInnes       m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
57595373324SBarry Smith       row = aij->rstart;
576dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;}
57795373324SBarry Smith       for ( i=0; i<m; i++ ) {
578416022c9SBarry Smith         ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr);
57995373324SBarry Smith         row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
58095373324SBarry Smith       }
5812ee70a88SLois Curfman McInnes       aj = Aloc->j;
582dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;}
58395373324SBarry Smith 
58495373324SBarry Smith       /* copy over the B part */
585ec8511deSBarry Smith       Aloc = (Mat_SeqAIJ*) aij->B->data;
5862ee70a88SLois Curfman McInnes       m = Aloc->m;  ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
58795373324SBarry Smith       row = aij->rstart;
5880452661fSBarry Smith       ct = cols = (int *) PetscMalloc( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols);
589dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];}
59095373324SBarry Smith       for ( i=0; i<m; i++ ) {
591416022c9SBarry Smith         ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr);
59295373324SBarry Smith         row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
59395373324SBarry Smith       }
5940452661fSBarry Smith       PetscFree(ct);
59578b31e54SBarry Smith       ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
59678b31e54SBarry Smith       ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
59717699dbbSLois Curfman McInnes       if (!rank) {
59878b31e54SBarry Smith         ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr);
59995373324SBarry Smith       }
60078b31e54SBarry Smith       ierr = MatDestroy(A); CHKERRQ(ierr);
60195373324SBarry Smith     }
60295373324SBarry Smith   }
6031eb62cbbSBarry Smith   return 0;
6041eb62cbbSBarry Smith }
6051eb62cbbSBarry Smith 
606416022c9SBarry Smith static int MatView_MPIAIJ(PetscObject obj,Viewer viewer)
607416022c9SBarry Smith {
608416022c9SBarry Smith   Mat         mat = (Mat) obj;
609416022c9SBarry Smith   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
610416022c9SBarry Smith   int         ierr;
611416022c9SBarry Smith   PetscObject vobj = (PetscObject) viewer;
612416022c9SBarry Smith 
61348d91487SBarry Smith   if (!aij->assembled) SETERRQ(1,"MatView_MPIAIJ:must assemble matrix");
614416022c9SBarry Smith   if (!viewer) {
615416022c9SBarry Smith     viewer = STDOUT_VIEWER_SELF; vobj = (PetscObject) viewer;
616416022c9SBarry Smith   }
617416022c9SBarry Smith   if (vobj->cookie == DRAW_COOKIE && vobj->type == NULLWINDOW) return 0;
618416022c9SBarry Smith   else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILE_VIEWER) {
619*d7e8b826SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr);
620416022c9SBarry Smith   }
621416022c9SBarry Smith   else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILES_VIEWER) {
622*d7e8b826SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr);
623*d7e8b826SBarry Smith   }
624*d7e8b826SBarry Smith   else if (vobj->cookie == VIEWER_COOKIE && vobj->type == MATLAB_VIEWER) {
625*d7e8b826SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr);
626416022c9SBarry Smith   }
627416022c9SBarry Smith   else if (vobj->cookie == DRAW_COOKIE) {
628*d7e8b826SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr);
629416022c9SBarry Smith   }
630416022c9SBarry Smith   else if (vobj->type == BINARY_FILE_VIEWER) {
631416022c9SBarry Smith     return MatView_MPIAIJ_Binary(mat,viewer);
632416022c9SBarry Smith   }
633416022c9SBarry Smith   return 0;
634416022c9SBarry Smith }
635416022c9SBarry Smith 
636ec8511deSBarry Smith extern int MatMarkDiag_SeqAIJ(Mat);
6371eb62cbbSBarry Smith /*
6381eb62cbbSBarry Smith     This has to provide several versions.
6391eb62cbbSBarry Smith 
6401eb62cbbSBarry Smith      1) per sequential
6411eb62cbbSBarry Smith      2) a) use only local smoothing updating outer values only once.
6421eb62cbbSBarry Smith         b) local smoothing updating outer values each inner iteration
643d6dfbf8fSBarry Smith      3) color updating out values betwen colors.
6441eb62cbbSBarry Smith */
645fc76ce87SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag,
646dbb450caSBarry Smith                            double fshift,int its,Vec xx)
6478a729477SBarry Smith {
64844a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
649d6dfbf8fSBarry Smith   Mat        AA = mat->A, BB = mat->B;
650ec8511deSBarry Smith   Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data;
6516abc6512SBarry Smith   Scalar     zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts;
6526abc6512SBarry Smith   int        ierr,*idx, *diag;
653416022c9SBarry Smith   int        n = mat->n, m = mat->m, i,shift = A->indexshift;
654da3a660dSBarry Smith   Vec        tt;
6558a729477SBarry Smith 
65648d91487SBarry Smith   if (!mat->assembled) SETERRQ(1,"MatRelax_MPIAIJ:must assemble matrix");
6571eb62cbbSBarry Smith 
658d6dfbf8fSBarry Smith   VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls);
659dbb450caSBarry Smith   xs = x + shift; /* shift by one for index start of 1 */
660dbb450caSBarry Smith   ls = ls + shift;
661ec8511deSBarry Smith   if (!A->diag) {if ((ierr = MatMarkDiag_SeqAIJ(AA))) return ierr;}
662d6dfbf8fSBarry Smith   diag = A->diag;
663acb40c82SBarry Smith   if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) {
66448d91487SBarry Smith     SETERRQ(1,"MatRelax_MPIAIJ:Option not supported");
665acb40c82SBarry Smith   }
666da3a660dSBarry Smith   if (flag & SOR_EISENSTAT) {
667da3a660dSBarry Smith     /* Let  A = L + U + D; where L is lower trianglar,
668da3a660dSBarry Smith     U is upper triangular, E is diagonal; This routine applies
669da3a660dSBarry Smith 
670da3a660dSBarry Smith             (L + E)^{-1} A (U + E)^{-1}
671da3a660dSBarry Smith 
672da3a660dSBarry Smith     to a vector efficiently using Eisenstat's trick. This is for
673da3a660dSBarry Smith     the case of SSOR preconditioner, so E is D/omega where omega
674da3a660dSBarry Smith     is the relaxation factor.
675da3a660dSBarry Smith     */
67678b31e54SBarry Smith     ierr = VecDuplicate(xx,&tt); CHKERRQ(ierr);
677464493b3SBarry Smith     PLogObjectParent(matin,tt);
678da3a660dSBarry Smith     VecGetArray(tt,&t);
679da3a660dSBarry Smith     scale = (2.0/omega) - 1.0;
680da3a660dSBarry Smith     /*  x = (E + U)^{-1} b */
681da3a660dSBarry Smith     VecSet(&zero,mat->lvec);
68264119d58SLois Curfman McInnes     ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
68378b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
684da3a660dSBarry Smith     for ( i=m-1; i>-1; i-- ) {
685da3a660dSBarry Smith       n    = A->i[i+1] - diag[i] - 1;
686dbb450caSBarry Smith       idx  = A->j + diag[i] + !shift;
687dbb450caSBarry Smith       v    = A->a + diag[i] + !shift;
688da3a660dSBarry Smith       sum  = b[i];
689da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,xs,v,idx,n);
690dbb450caSBarry Smith       d    = fshift + A->a[diag[i]+shift];
691da3a660dSBarry Smith       n    = B->i[i+1] - B->i[i];
692dbb450caSBarry Smith       idx  = B->j + B->i[i] + shift;
693dbb450caSBarry Smith       v    = B->a + B->i[i] + shift;
694da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ls,v,idx,n);
695da3a660dSBarry Smith       x[i] = omega*(sum/d);
696da3a660dSBarry Smith     }
69764119d58SLois Curfman McInnes     ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
69878b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
699da3a660dSBarry Smith 
700da3a660dSBarry Smith     /*  t = b - (2*E - D)x */
701da3a660dSBarry Smith     v = A->a;
702dbb450caSBarry Smith     for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ + shift])*x[i]; }
703da3a660dSBarry Smith 
704da3a660dSBarry Smith     /*  t = (E + L)^{-1}t */
705dbb450caSBarry Smith     ts = t + shift; /* shifted by one for index start of a or mat->j*/
706da3a660dSBarry Smith     diag = A->diag;
707da3a660dSBarry Smith     VecSet(&zero,mat->lvec);
70864119d58SLois Curfman McInnes     ierr = VecPipelineBegin(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
70978b31e54SBarry Smith                                                  mat->Mvctx); CHKERRQ(ierr);
710da3a660dSBarry Smith     for ( i=0; i<m; i++ ) {
711da3a660dSBarry Smith       n    = diag[i] - A->i[i];
712dbb450caSBarry Smith       idx  = A->j + A->i[i] + shift;
713dbb450caSBarry Smith       v    = A->a + A->i[i] + shift;
714da3a660dSBarry Smith       sum  = t[i];
715da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ts,v,idx,n);
716dbb450caSBarry Smith       d    = fshift + A->a[diag[i]+shift];
717da3a660dSBarry Smith       n    = B->i[i+1] - B->i[i];
718dbb450caSBarry Smith       idx  = B->j + B->i[i] + shift;
719dbb450caSBarry Smith       v    = B->a + B->i[i] + shift;
720da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ls,v,idx,n);
721da3a660dSBarry Smith       t[i] = omega*(sum/d);
722da3a660dSBarry Smith     }
72364119d58SLois Curfman McInnes     ierr = VecPipelineEnd(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
72478b31e54SBarry Smith                                                     mat->Mvctx); CHKERRQ(ierr);
725da3a660dSBarry Smith     /*  x = x + t */
726da3a660dSBarry Smith     for ( i=0; i<m; i++ ) { x[i] += t[i]; }
727da3a660dSBarry Smith     VecDestroy(tt);
728da3a660dSBarry Smith     return 0;
729da3a660dSBarry Smith   }
730da3a660dSBarry Smith 
7311eb62cbbSBarry Smith 
732d6dfbf8fSBarry Smith   if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){
733da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
734da3a660dSBarry Smith       VecSet(&zero,mat->lvec); VecSet(&zero,xx);
735da3a660dSBarry Smith     }
736da3a660dSBarry Smith     else {
73764119d58SLois Curfman McInnes       ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
73878b31e54SBarry Smith       CHKERRQ(ierr);
73964119d58SLois Curfman McInnes       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
74078b31e54SBarry Smith       CHKERRQ(ierr);
741da3a660dSBarry Smith     }
742d6dfbf8fSBarry Smith     while (its--) {
743d6dfbf8fSBarry Smith       /* go down through the rows */
74464119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
74578b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
746d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
747d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
748dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
749dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
750d6dfbf8fSBarry Smith         sum  = b[i];
751d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
752dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
753d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
754dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
755dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
756d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
757d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
758d6dfbf8fSBarry Smith       }
75964119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
76078b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
761d6dfbf8fSBarry Smith       /* come up through the rows */
76264119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
76378b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
764d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
765d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
766dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
767dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
768d6dfbf8fSBarry Smith         sum  = b[i];
769d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
770dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
771d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
772dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
773dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
774d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
775d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
776d6dfbf8fSBarry Smith       }
77764119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
77878b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
779d6dfbf8fSBarry Smith     }
780d6dfbf8fSBarry Smith   }
781d6dfbf8fSBarry Smith   else if (flag & SOR_FORWARD_SWEEP){
782da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
783da3a660dSBarry Smith       VecSet(&zero,mat->lvec);
78464119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
78578b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
786da3a660dSBarry Smith       for ( i=0; i<m; i++ ) {
787da3a660dSBarry Smith         n    = diag[i] - A->i[i];
788dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
789dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
790da3a660dSBarry Smith         sum  = b[i];
791da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
792dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
793da3a660dSBarry Smith         n    = B->i[i+1] - B->i[i];
794dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
795dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
796da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
797da3a660dSBarry Smith         x[i] = omega*(sum/d);
798da3a660dSBarry Smith       }
79964119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
80078b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
801da3a660dSBarry Smith       its--;
802da3a660dSBarry Smith     }
803d6dfbf8fSBarry Smith     while (its--) {
80464119d58SLois Curfman McInnes       ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
80578b31e54SBarry Smith       CHKERRQ(ierr);
80664119d58SLois Curfman McInnes       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
80778b31e54SBarry Smith       CHKERRQ(ierr);
80864119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
80978b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
810d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
811d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
812dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
813dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
814d6dfbf8fSBarry Smith         sum  = b[i];
815d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
816dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
817d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
818dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
819dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
820d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
821d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
822d6dfbf8fSBarry Smith       }
82364119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
82478b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
825d6dfbf8fSBarry Smith     }
826d6dfbf8fSBarry Smith   }
827d6dfbf8fSBarry Smith   else if (flag & SOR_BACKWARD_SWEEP){
828da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
829da3a660dSBarry Smith       VecSet(&zero,mat->lvec);
83064119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
83178b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
832da3a660dSBarry Smith       for ( i=m-1; i>-1; i-- ) {
833da3a660dSBarry Smith         n    = A->i[i+1] - diag[i] - 1;
834dbb450caSBarry Smith         idx  = A->j + diag[i] + !shift;
835dbb450caSBarry Smith         v    = A->a + diag[i] + !shift;
836da3a660dSBarry Smith         sum  = b[i];
837da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
838dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
839da3a660dSBarry Smith         n    = B->i[i+1] - B->i[i];
840dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
841dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
842da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
843da3a660dSBarry Smith         x[i] = omega*(sum/d);
844da3a660dSBarry Smith       }
84564119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
84678b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
847da3a660dSBarry Smith       its--;
848da3a660dSBarry Smith     }
849d6dfbf8fSBarry Smith     while (its--) {
85064119d58SLois Curfman McInnes       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN,
85178b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
85264119d58SLois Curfman McInnes       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN,
85378b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
85464119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
85578b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
856d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
857d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
858dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
859dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
860d6dfbf8fSBarry Smith         sum  = b[i];
861d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
862dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
863d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
864dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
865dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
866d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
867d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
868d6dfbf8fSBarry Smith       }
86964119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
87078b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
871d6dfbf8fSBarry Smith     }
872d6dfbf8fSBarry Smith   }
873d6dfbf8fSBarry Smith   else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
874da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
875dbb450caSBarry Smith       return MatRelax(mat->A,bb,omega,flag,fshift,its,xx);
876da3a660dSBarry Smith     }
87764119d58SLois Curfman McInnes     ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
87878b31e54SBarry Smith     CHKERRQ(ierr);
87964119d58SLois Curfman McInnes     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
88078b31e54SBarry Smith     CHKERRQ(ierr);
881d6dfbf8fSBarry Smith     while (its--) {
882d6dfbf8fSBarry Smith       /* go down through the rows */
883d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
884d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
885dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
886dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
887d6dfbf8fSBarry Smith         sum  = b[i];
888d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
889dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
890d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
891dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
892dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
893d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
894d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
895d6dfbf8fSBarry Smith       }
896d6dfbf8fSBarry Smith       /* come up through the rows */
897d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
898d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
899dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
900dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
901d6dfbf8fSBarry Smith         sum  = b[i];
902d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
903dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
904d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
905dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
906dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
907d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
908d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
909d6dfbf8fSBarry Smith       }
910d6dfbf8fSBarry Smith     }
911d6dfbf8fSBarry Smith   }
912d6dfbf8fSBarry Smith   else if (flag & SOR_LOCAL_FORWARD_SWEEP){
913da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
914dbb450caSBarry Smith       return MatRelax(mat->A,bb,omega,flag,fshift,its,xx);
915da3a660dSBarry Smith     }
91664119d58SLois Curfman McInnes     ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
91778b31e54SBarry Smith     CHKERRQ(ierr);
91864119d58SLois Curfman McInnes     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
91978b31e54SBarry Smith     CHKERRQ(ierr);
920d6dfbf8fSBarry Smith     while (its--) {
921d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
922d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
923dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
924dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
925d6dfbf8fSBarry Smith         sum  = b[i];
926d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
927dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
928d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
929dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
930dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
931d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
932d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
933d6dfbf8fSBarry Smith       }
934d6dfbf8fSBarry Smith     }
935d6dfbf8fSBarry Smith   }
936d6dfbf8fSBarry Smith   else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
937da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
938dbb450caSBarry Smith       return MatRelax(mat->A,bb,omega,flag,fshift,its,xx);
939da3a660dSBarry Smith     }
94064119d58SLois Curfman McInnes     ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,
94178b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
94264119d58SLois Curfman McInnes     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,
94378b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
944d6dfbf8fSBarry Smith     while (its--) {
945d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
946d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
947dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
948dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
949d6dfbf8fSBarry Smith         sum  = b[i];
950d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
951dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
952d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
953dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
954dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
955d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
956d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
957d6dfbf8fSBarry Smith       }
958d6dfbf8fSBarry Smith     }
959d6dfbf8fSBarry Smith   }
9608a729477SBarry Smith   return 0;
9618a729477SBarry Smith }
962a66be287SLois Curfman McInnes 
963fc76ce87SLois Curfman McInnes static int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,int *nz,
964fc76ce87SLois Curfman McInnes                              int *nzalloc,int *mem)
965a66be287SLois Curfman McInnes {
966a66be287SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
967a66be287SLois Curfman McInnes   Mat        A = mat->A, B = mat->B;
968a66be287SLois Curfman McInnes   int        ierr, isend[3], irecv[3], nzA, nzallocA, memA;
969a66be287SLois Curfman McInnes 
97078b31e54SBarry Smith   ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr);
97178b31e54SBarry Smith   ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr);
972a66be287SLois Curfman McInnes   isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA;
973a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
974a66be287SLois Curfman McInnes     *nz = isend[0]; *nzalloc = isend[1]; *mem = isend[2];
975a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
976d65a2f8fSBarry Smith     MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_MAX,matin->comm);
977a66be287SLois Curfman McInnes     *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2];
978a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
979d65a2f8fSBarry Smith     MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_SUM,matin->comm);
980a66be287SLois Curfman McInnes     *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2];
981a66be287SLois Curfman McInnes   }
982a66be287SLois Curfman McInnes   return 0;
983a66be287SLois Curfman McInnes }
984a66be287SLois Curfman McInnes 
985299609e3SLois Curfman McInnes extern int MatLUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,Mat*);
986299609e3SLois Curfman McInnes extern int MatLUFactorNumeric_MPIAIJ(Mat,Mat*);
987299609e3SLois Curfman McInnes extern int MatLUFactor_MPIAIJ(Mat,IS,IS,double);
988299609e3SLois Curfman McInnes extern int MatILUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,int,Mat *);
989299609e3SLois Curfman McInnes extern int MatSolve_MPIAIJ(Mat,Vec,Vec);
990299609e3SLois Curfman McInnes extern int MatSolveAdd_MPIAIJ(Mat,Vec,Vec,Vec);
991299609e3SLois Curfman McInnes extern int MatSolveTrans_MPIAIJ(Mat,Vec,Vec);
992299609e3SLois Curfman McInnes extern int MatSolveTransAdd_MPIAIJ(Mat,Vec,Vec,Vec);
993299609e3SLois Curfman McInnes 
994416022c9SBarry Smith static int MatSetOption_MPIAIJ(Mat A,MatOption op)
995c74985f6SBarry Smith {
996c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
997c74985f6SBarry Smith 
998c0bbcb79SLois Curfman McInnes   if (op == NO_NEW_NONZERO_LOCATIONS ||
999c0bbcb79SLois Curfman McInnes       op == YES_NEW_NONZERO_LOCATIONS ||
1000c0bbcb79SLois Curfman McInnes       op == COLUMNS_SORTED ||
1001c0bbcb79SLois Curfman McInnes       op == ROW_ORIENTED) {
1002c0bbcb79SLois Curfman McInnes         MatSetOption(a->A,op);
1003c0bbcb79SLois Curfman McInnes         MatSetOption(a->B,op);
1004c74985f6SBarry Smith   }
1005c0bbcb79SLois Curfman McInnes   else if (op == ROWS_SORTED ||
1006c0bbcb79SLois Curfman McInnes            op == SYMMETRIC_MATRIX ||
1007c0bbcb79SLois Curfman McInnes            op == STRUCTURALLY_SYMMETRIC_MATRIX ||
1008c0bbcb79SLois Curfman McInnes            op == YES_NEW_DIAGONALS)
1009c0bbcb79SLois Curfman McInnes     PLogInfo((PetscObject)A,"Info:MatSetOption_MPIAIJ:Option ignored\n");
1010bbb6d6a8SBarry Smith   else if (op == COLUMN_ORIENTED)
10114d39ef84SLois Curfman McInnes     {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:COLUMN_ORIENTED");}
1012c0bbcb79SLois Curfman McInnes   else if (op == NO_NEW_DIAGONALS)
10134d39ef84SLois Curfman McInnes     {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:NO_NEW_DIAGONALS");}
1014c0bbcb79SLois Curfman McInnes   else
10154d39ef84SLois Curfman McInnes     {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:unknown option");}
1016c74985f6SBarry Smith   return 0;
1017c74985f6SBarry Smith }
1018c74985f6SBarry Smith 
1019d1710a03SLois Curfman McInnes static int MatGetSize_MPIAIJ(Mat matin,int *m,int *n)
1020c74985f6SBarry Smith {
102144a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1022c74985f6SBarry Smith   *m = mat->M; *n = mat->N;
1023c74985f6SBarry Smith   return 0;
1024c74985f6SBarry Smith }
1025c74985f6SBarry Smith 
1026d1710a03SLois Curfman McInnes static int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n)
1027c74985f6SBarry Smith {
102844a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1029b7c46309SBarry Smith   *m = mat->m; *n = mat->N;
1030c74985f6SBarry Smith   return 0;
1031c74985f6SBarry Smith }
1032c74985f6SBarry Smith 
1033d1710a03SLois Curfman McInnes static int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n)
1034c74985f6SBarry Smith {
103544a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1036c74985f6SBarry Smith   *m = mat->rstart; *n = mat->rend;
1037c74985f6SBarry Smith   return 0;
1038c74985f6SBarry Smith }
1039c74985f6SBarry Smith 
104039e00950SLois Curfman McInnes static int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v)
104139e00950SLois Curfman McInnes {
1042154123eaSLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1043154123eaSLois Curfman McInnes   Scalar     *vworkA, *vworkB, **pvA, **pvB;
1044154123eaSLois Curfman McInnes   int        i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart;
1045154123eaSLois Curfman McInnes   int        nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend;
104639e00950SLois Curfman McInnes 
1047416022c9SBarry Smith   if (row < rstart || row >= rend) SETERRQ(1,"MatGetRow_MPIAIJ:only local rows")
1048abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
104939e00950SLois Curfman McInnes 
1050154123eaSLois Curfman McInnes   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1051154123eaSLois Curfman McInnes   if (!v)   {pvA = 0; pvB = 0;}
1052154123eaSLois Curfman McInnes   if (!idx) {pcA = 0; if (!v) pcB = 0;}
105378b31e54SBarry Smith   ierr = MatGetRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
105478b31e54SBarry Smith   ierr = MatGetRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
1055154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1056154123eaSLois Curfman McInnes 
1057154123eaSLois Curfman McInnes   if (v  || idx) {
1058154123eaSLois Curfman McInnes     if (nztot) {
1059154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1060299609e3SLois Curfman McInnes       int imark;
106148b35521SBarry Smith       if (mat->assembled) {
1062154123eaSLois Curfman McInnes         for (i=0; i<nzB; i++) cworkB[i] = mat->garray[cworkB[i]];
106348b35521SBarry Smith       }
1064154123eaSLois Curfman McInnes       if (v) {
10650452661fSBarry Smith         *v = (Scalar *) PetscMalloc( (nztot)*sizeof(Scalar) ); CHKPTRQ(*v);
106639e00950SLois Curfman McInnes         for ( i=0; i<nzB; i++ ) {
1067154123eaSLois Curfman McInnes           if (cworkB[i] < cstart)   (*v)[i] = vworkB[i];
1068154123eaSLois Curfman McInnes           else break;
1069154123eaSLois Curfman McInnes         }
1070154123eaSLois Curfman McInnes         imark = i;
1071154123eaSLois Curfman McInnes         for ( i=0; i<nzA; i++ )     (*v)[imark+i] = vworkA[i];
1072299609e3SLois Curfman McInnes         for ( i=imark; i<nzB; i++ ) (*v)[nzA+i] = vworkB[i];
1073154123eaSLois Curfman McInnes       }
1074154123eaSLois Curfman McInnes       if (idx) {
10750452661fSBarry Smith         *idx = (int *) PetscMalloc( (nztot)*sizeof(int) ); CHKPTRQ(*idx);
1076154123eaSLois Curfman McInnes         for (i=0; i<nzA; i++) cworkA[i] += cstart;
1077154123eaSLois Curfman McInnes         for ( i=0; i<nzB; i++ ) {
1078154123eaSLois Curfman McInnes           if (cworkB[i] < cstart)   (*idx)[i] = cworkB[i];
1079154123eaSLois Curfman McInnes           else break;
1080154123eaSLois Curfman McInnes         }
1081154123eaSLois Curfman McInnes         imark = i;
1082154123eaSLois Curfman McInnes         for ( i=0; i<nzA; i++ )     (*idx)[imark+i] = cworkA[i];
1083299609e3SLois Curfman McInnes         for ( i=imark; i<nzB; i++ ) (*idx)[nzA+i] = cworkB[i];
108439e00950SLois Curfman McInnes       }
108539e00950SLois Curfman McInnes     }
108639e00950SLois Curfman McInnes     else {*idx = 0; *v=0;}
1087154123eaSLois Curfman McInnes   }
108839e00950SLois Curfman McInnes   *nz = nztot;
108978b31e54SBarry Smith   ierr = MatRestoreRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
109078b31e54SBarry Smith   ierr = MatRestoreRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
109139e00950SLois Curfman McInnes   return 0;
109239e00950SLois Curfman McInnes }
109339e00950SLois Curfman McInnes 
109439e00950SLois Curfman McInnes static int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v)
109539e00950SLois Curfman McInnes {
10960452661fSBarry Smith   if (idx) PetscFree(*idx);
10970452661fSBarry Smith   if (v) PetscFree(*v);
109839e00950SLois Curfman McInnes   return 0;
109939e00950SLois Curfman McInnes }
110039e00950SLois Curfman McInnes 
1101cddf8d76SBarry Smith static int MatNorm_MPIAIJ(Mat mat,NormType type,double *norm)
1102855ac2c5SLois Curfman McInnes {
1103855ac2c5SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
1104ec8511deSBarry Smith   Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data;
1105416022c9SBarry Smith   int        ierr, i, j, cstart = aij->cstart,shift = amat->indexshift;
1106416022c9SBarry Smith   double     sum = 0.0;
110704ca555eSLois Curfman McInnes   Scalar     *v;
110804ca555eSLois Curfman McInnes 
1109416022c9SBarry Smith   if (!aij->assembled) SETERRQ(1,"MatNorm_MPIAIJ:Must assemble matrix");
111017699dbbSLois Curfman McInnes   if (aij->size == 1) {
111114183eadSLois Curfman McInnes     ierr =  MatNorm(aij->A,type,norm); CHKERRQ(ierr);
111237fa93a5SLois Curfman McInnes   } else {
111304ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
111404ca555eSLois Curfman McInnes       v = amat->a;
111504ca555eSLois Curfman McInnes       for (i=0; i<amat->nz; i++ ) {
111604ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
111704ca555eSLois Curfman McInnes         sum += real(conj(*v)*(*v)); v++;
111804ca555eSLois Curfman McInnes #else
111904ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
112004ca555eSLois Curfman McInnes #endif
112104ca555eSLois Curfman McInnes       }
112204ca555eSLois Curfman McInnes       v = bmat->a;
112304ca555eSLois Curfman McInnes       for (i=0; i<bmat->nz; i++ ) {
112404ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
112504ca555eSLois Curfman McInnes         sum += real(conj(*v)*(*v)); v++;
112604ca555eSLois Curfman McInnes #else
112704ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
112804ca555eSLois Curfman McInnes #endif
112904ca555eSLois Curfman McInnes       }
113004ca555eSLois Curfman McInnes       MPI_Allreduce((void*)&sum,(void*)norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);
113104ca555eSLois Curfman McInnes       *norm = sqrt(*norm);
113204ca555eSLois Curfman McInnes     }
113304ca555eSLois Curfman McInnes     else if (type == NORM_1) { /* max column norm */
113404ca555eSLois Curfman McInnes       double *tmp, *tmp2;
113504ca555eSLois Curfman McInnes       int    *jj, *garray = aij->garray;
11360452661fSBarry Smith       tmp  = (double *) PetscMalloc( aij->N*sizeof(double) ); CHKPTRQ(tmp);
11370452661fSBarry Smith       tmp2 = (double *) PetscMalloc( aij->N*sizeof(double) ); CHKPTRQ(tmp2);
1138cddf8d76SBarry Smith       PetscMemzero(tmp,aij->N*sizeof(double));
113904ca555eSLois Curfman McInnes       *norm = 0.0;
114004ca555eSLois Curfman McInnes       v = amat->a; jj = amat->j;
114104ca555eSLois Curfman McInnes       for ( j=0; j<amat->nz; j++ ) {
1142579c6b6fSBarry Smith         tmp[cstart + *jj++ + shift] += PetscAbsScalar(*v);  v++;
114304ca555eSLois Curfman McInnes       }
114404ca555eSLois Curfman McInnes       v = bmat->a; jj = bmat->j;
114504ca555eSLois Curfman McInnes       for ( j=0; j<bmat->nz; j++ ) {
1146579c6b6fSBarry Smith         tmp[garray[*jj++ + shift]] += PetscAbsScalar(*v); v++;
114704ca555eSLois Curfman McInnes       }
114804ca555eSLois Curfman McInnes       MPI_Allreduce((void*)tmp,(void*)tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm);
114904ca555eSLois Curfman McInnes       for ( j=0; j<aij->N; j++ ) {
115004ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
115104ca555eSLois Curfman McInnes       }
11520452661fSBarry Smith       PetscFree(tmp); PetscFree(tmp2);
115304ca555eSLois Curfman McInnes     }
115404ca555eSLois Curfman McInnes     else if (type == NORM_INFINITY) { /* max row norm */
1155515d9167SLois Curfman McInnes       double ntemp = 0.0;
115604ca555eSLois Curfman McInnes       for ( j=0; j<amat->m; j++ ) {
1157dbb450caSBarry Smith         v = amat->a + amat->i[j] + shift;
115804ca555eSLois Curfman McInnes         sum = 0.0;
115904ca555eSLois Curfman McInnes         for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) {
1160cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
116104ca555eSLois Curfman McInnes         }
1162dbb450caSBarry Smith         v = bmat->a + bmat->i[j] + shift;
116304ca555eSLois Curfman McInnes         for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) {
1164cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
116504ca555eSLois Curfman McInnes         }
1166515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
116704ca555eSLois Curfman McInnes       }
1168515d9167SLois Curfman McInnes       MPI_Allreduce((void*)&ntemp,(void*)norm,1,MPI_DOUBLE,MPI_MAX,mat->comm);
116904ca555eSLois Curfman McInnes     }
117004ca555eSLois Curfman McInnes     else {
1171515d9167SLois Curfman McInnes       SETERRQ(1,"MatNorm_MPIAIJ:No support for two norm");
117204ca555eSLois Curfman McInnes     }
117337fa93a5SLois Curfman McInnes   }
1174855ac2c5SLois Curfman McInnes   return 0;
1175855ac2c5SLois Curfman McInnes }
1176855ac2c5SLois Curfman McInnes 
11770de55854SLois Curfman McInnes static int MatTranspose_MPIAIJ(Mat A,Mat *matout)
1178b7c46309SBarry Smith {
1179b7c46309SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
1180dbb450caSBarry Smith   Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data;
1181416022c9SBarry Smith   int        ierr,shift = Aloc->indexshift;
1182416022c9SBarry Smith   Mat        B;
1183b7c46309SBarry Smith   int        M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct;
1184b7c46309SBarry Smith   Scalar     *array;
1185b7c46309SBarry Smith 
1186416022c9SBarry Smith   if (!matout && M != N) SETERRQ(1,"MatTranspose_MPIAIJ:Square only in-place");
1187b7c46309SBarry Smith   ierr = MatCreateMPIAIJ(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,0,0,0,0,&B);
1188b7c46309SBarry Smith   CHKERRQ(ierr);
1189b7c46309SBarry Smith 
1190b7c46309SBarry Smith   /* copy over the A part */
1191ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*) a->A->data;
1192b7c46309SBarry Smith   m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1193b7c46309SBarry Smith   row = a->rstart;
1194dbb450caSBarry Smith   for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;}
1195b7c46309SBarry Smith   for ( i=0; i<m; i++ ) {
1196416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1197b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
1198b7c46309SBarry Smith   }
1199b7c46309SBarry Smith   aj = Aloc->j;
1200dbb450caSBarry Smith   for ( i=0; i<ai[m]|+shift; i++ ) {aj[i] -= a->cstart + shift;}
1201b7c46309SBarry Smith 
1202b7c46309SBarry Smith   /* copy over the B part */
1203ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*) a->B->data;
1204b7c46309SBarry Smith   m = Aloc->m;  ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1205b7c46309SBarry Smith   row = a->rstart;
12060452661fSBarry Smith   ct = cols = (int *) PetscMalloc( (1+ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols);
1207dbb450caSBarry Smith   for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];}
1208b7c46309SBarry Smith   for ( i=0; i<m; i++ ) {
1209416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1210b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
1211b7c46309SBarry Smith   }
12120452661fSBarry Smith   PetscFree(ct);
1213b7c46309SBarry Smith   ierr = MatAssemblyBegin(B,FINAL_ASSEMBLY); CHKERRQ(ierr);
1214b7c46309SBarry Smith   ierr = MatAssemblyEnd(B,FINAL_ASSEMBLY); CHKERRQ(ierr);
12150de55854SLois Curfman McInnes   if (matout) {
12160de55854SLois Curfman McInnes     *matout = B;
12170de55854SLois Curfman McInnes   } else {
12180de55854SLois Curfman McInnes     /* This isn't really an in-place transpose .... but free data structures from a */
12190452661fSBarry Smith     PetscFree(a->rowners);
12200de55854SLois Curfman McInnes     ierr = MatDestroy(a->A); CHKERRQ(ierr);
12210de55854SLois Curfman McInnes     ierr = MatDestroy(a->B); CHKERRQ(ierr);
12220452661fSBarry Smith     if (a->colmap) PetscFree(a->colmap);
12230452661fSBarry Smith     if (a->garray) PetscFree(a->garray);
12240de55854SLois Curfman McInnes     if (a->lvec) VecDestroy(a->lvec);
1225a56f8943SBarry Smith     if (a->Mvctx) VecScatterDestroy(a->Mvctx);
12260452661fSBarry Smith     PetscFree(a);
1227416022c9SBarry Smith     PetscMemcpy(A,B,sizeof(struct _Mat));
12280452661fSBarry Smith     PetscHeaderDestroy(B);
12290de55854SLois Curfman McInnes   }
1230b7c46309SBarry Smith   return 0;
1231b7c46309SBarry Smith }
1232b7c46309SBarry Smith 
1233fc76ce87SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MatType,Mat *);
1234a56f8943SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat,Mat *,int);
1235d6dfbf8fSBarry Smith 
12368a729477SBarry Smith /* -------------------------------------------------------------------*/
12372ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ,
123839e00950SLois Curfman McInnes        MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ,
123944a69424SLois Curfman McInnes        MatMult_MPIAIJ,MatMultAdd_MPIAIJ,
124044a69424SLois Curfman McInnes        MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ,
1241299609e3SLois Curfman McInnes        MatSolve_MPIAIJ,MatSolveAdd_MPIAIJ,
1242299609e3SLois Curfman McInnes        MatSolveTrans_MPIAIJ,MatSolveTransAdd_MPIAIJ,
1243299609e3SLois Curfman McInnes        MatLUFactor_MPIAIJ,0,
124444a69424SLois Curfman McInnes        MatRelax_MPIAIJ,
1245b7c46309SBarry Smith        MatTranspose_MPIAIJ,
1246a66be287SLois Curfman McInnes        MatGetInfo_MPIAIJ,0,
1247855ac2c5SLois Curfman McInnes        MatGetDiagonal_MPIAIJ,0,MatNorm_MPIAIJ,
1248ee50ffe9SBarry Smith        MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ,
12491eb62cbbSBarry Smith        0,
1250299609e3SLois Curfman McInnes        MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ,
1251299609e3SLois Curfman McInnes        MatGetReordering_MPIAIJ,
1252299609e3SLois Curfman McInnes        MatLUFactorSymbolic_MPIAIJ,MatLUFactorNumeric_MPIAIJ,0,0,
1253d1710a03SLois Curfman McInnes        MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ,
1254299609e3SLois Curfman McInnes        MatILUFactorSymbolic_MPIAIJ,0,
1255ff7509f2SBarry Smith        0,0,MatConvert_MPIAIJ,0,0,MatCopyPrivate_MPIAIJ};
12568a729477SBarry Smith 
12571987afe7SBarry Smith /*@C
1258ff756334SLois Curfman McInnes    MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format
1259ff756334SLois Curfman McInnes    (the default parallel PETSc format).
12608a729477SBarry Smith 
12618a729477SBarry Smith    Input Parameters:
12621eb62cbbSBarry Smith .  comm - MPI communicator
12637d3e4905SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
12647d3e4905SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated
12657d3e4905SLois Curfman McInnes            if N is given)
12667d3e4905SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
12677d3e4905SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated
12687d3e4905SLois Curfman McInnes            if n is given)
1269ab693e5aSLois Curfman McInnes .  d_nz - number of nonzeros per row in diagonal portion of local submatrix
1270ff756334SLois Curfman McInnes            (same for all local rows)
1271ab693e5aSLois Curfman McInnes .  d_nzz - number of nonzeros per row in diagonal portion of local submatrix
1272ab693e5aSLois Curfman McInnes            or null (possibly different for each row).  You must leave room
1273ab693e5aSLois Curfman McInnes            for the diagonal entry even if it is zero.
1274ab693e5aSLois Curfman McInnes .  o_nz - number of nonzeros per row in off-diagonal portion of local
1275ab693e5aSLois Curfman McInnes            submatrix (same for all local rows).
1276ab693e5aSLois Curfman McInnes .  o_nzz - number of nonzeros per row in off-diagonal portion of local
1277ab693e5aSLois Curfman McInnes            submatrix or null (possibly different for each row).
12788a729477SBarry Smith 
1279ff756334SLois Curfman McInnes    Output Parameter:
12808a729477SBarry Smith .  newmat - the matrix
12818a729477SBarry Smith 
1282ff756334SLois Curfman McInnes    Notes:
1283ff756334SLois Curfman McInnes    The AIJ format (also called the Yale sparse matrix format or
1284ff756334SLois Curfman McInnes    compressed row storage), is fully compatible with standard Fortran 77
12850002213bSLois Curfman McInnes    storage.  That is, the stored row and column indices can begin at
12860002213bSLois Curfman McInnes    either one (as in Fortran) or zero.  See the users manual for details.
1287ff756334SLois Curfman McInnes 
1288ff756334SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
1289ff756334SLois Curfman McInnes    (possibly both).
1290ff756334SLois Curfman McInnes 
1291e0245417SLois Curfman McInnes    Storage Information:
1292e0245417SLois Curfman McInnes    For a square global matrix we define each processor's diagonal portion
1293e0245417SLois Curfman McInnes    to be its local rows and the corresponding columns (a square submatrix);
1294e0245417SLois Curfman McInnes    each processor's off-diagonal portion encompasses the remainder of the
1295e0245417SLois Curfman McInnes    local matrix (a rectangular submatrix).
1296e0245417SLois Curfman McInnes 
1297e0245417SLois Curfman McInnes    The user can specify preallocated storage for the diagonal part of
1298e0245417SLois Curfman McInnes    the local submatrix with either d_nz or d_nnz (not both). Set both
1299e0245417SLois Curfman McInnes    d_nz and d_nnz to zero for PETSc to control dynamic memory allocation.
1300e0245417SLois Curfman McInnes    Likewise, specify preallocated storage for the off-diagonal part of
1301e0245417SLois Curfman McInnes    the local submatrix with o_nz or o_nnz (not both).
1302ff756334SLois Curfman McInnes 
1303dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel
1304ff756334SLois Curfman McInnes 
1305fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues()
13068a729477SBarry Smith @*/
13071eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N,
13081eb62cbbSBarry Smith                     int d_nz,int *d_nnz, int o_nz,int *o_nnz,Mat *newmat)
13098a729477SBarry Smith {
13108a729477SBarry Smith   Mat          mat;
1311416022c9SBarry Smith   Mat_MPIAIJ   *a;
13126abc6512SBarry Smith   int          ierr, i,sum[2],work[2];
1313416022c9SBarry Smith 
13148a729477SBarry Smith   *newmat         = 0;
13150452661fSBarry Smith   PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm);
1316a5a9c739SBarry Smith   PLogObjectCreate(mat);
13170452661fSBarry Smith   mat->data       = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a);
1318416022c9SBarry Smith   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
131944a69424SLois Curfman McInnes   mat->destroy    = MatDestroy_MPIAIJ;
132044a69424SLois Curfman McInnes   mat->view       = MatView_MPIAIJ;
13218a729477SBarry Smith   mat->factor     = 0;
1322d6dfbf8fSBarry Smith 
132364119d58SLois Curfman McInnes   a->insertmode = NOT_SET_VALUES;
132417699dbbSLois Curfman McInnes   MPI_Comm_rank(comm,&a->rank);
132517699dbbSLois Curfman McInnes   MPI_Comm_size(comm,&a->size);
13261eb62cbbSBarry Smith 
13271987afe7SBarry Smith   if (m == PETSC_DECIDE && (d_nnz || o_nnz))
13281987afe7SBarry Smith     SETERRQ(1,"MatCreateMPIAIJ:Cannot have PETSc decide rows but set d_nnz or o_nnz");
13291987afe7SBarry Smith 
1330dbd7a890SLois Curfman McInnes   if (M == PETSC_DECIDE || N == PETSC_DECIDE) {
13311eb62cbbSBarry Smith     work[0] = m; work[1] = n;
1332d65a2f8fSBarry Smith     MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );
1333dbd7a890SLois Curfman McInnes     if (M == PETSC_DECIDE) M = sum[0];
1334dbd7a890SLois Curfman McInnes     if (N == PETSC_DECIDE) N = sum[1];
13351eb62cbbSBarry Smith   }
133617699dbbSLois Curfman McInnes   if (m == PETSC_DECIDE) {m = M/a->size + ((M % a->size) > a->rank);}
133717699dbbSLois Curfman McInnes   if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);}
1338416022c9SBarry Smith   a->m = m;
1339416022c9SBarry Smith   a->n = n;
1340416022c9SBarry Smith   a->N = N;
1341416022c9SBarry Smith   a->M = M;
13421eb62cbbSBarry Smith 
13431eb62cbbSBarry Smith   /* build local table of row and column ownerships */
13440452661fSBarry Smith   a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners);
1345579c6b6fSBarry Smith   PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ));
134617699dbbSLois Curfman McInnes   a->cowners = a->rowners + a->size + 1;
1347416022c9SBarry Smith   MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm);
1348416022c9SBarry Smith   a->rowners[0] = 0;
134917699dbbSLois Curfman McInnes   for ( i=2; i<=a->size; i++ ) {
1350416022c9SBarry Smith     a->rowners[i] += a->rowners[i-1];
13518a729477SBarry Smith   }
135217699dbbSLois Curfman McInnes   a->rstart = a->rowners[a->rank];
135317699dbbSLois Curfman McInnes   a->rend   = a->rowners[a->rank+1];
1354416022c9SBarry Smith   MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm);
1355416022c9SBarry Smith   a->cowners[0] = 0;
135617699dbbSLois Curfman McInnes   for ( i=2; i<=a->size; i++ ) {
1357416022c9SBarry Smith     a->cowners[i] += a->cowners[i-1];
13588a729477SBarry Smith   }
135917699dbbSLois Curfman McInnes   a->cstart = a->cowners[a->rank];
136017699dbbSLois Curfman McInnes   a->cend   = a->cowners[a->rank+1];
13618a729477SBarry Smith 
1362416022c9SBarry Smith   ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,n,d_nz,d_nnz,&a->A); CHKERRQ(ierr);
1363416022c9SBarry Smith   PLogObjectParent(mat,a->A);
1364416022c9SBarry Smith   ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,N,o_nz,o_nnz,&a->B); CHKERRQ(ierr);
1365416022c9SBarry Smith   PLogObjectParent(mat,a->B);
13668a729477SBarry Smith 
13671eb62cbbSBarry Smith   /* build cache for off array entries formed */
1368416022c9SBarry Smith   ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr);
1369416022c9SBarry Smith   a->colmap    = 0;
1370416022c9SBarry Smith   a->garray    = 0;
13718a729477SBarry Smith 
13721eb62cbbSBarry Smith   /* stuff used for matrix vector multiply */
1373416022c9SBarry Smith   a->lvec      = 0;
1374416022c9SBarry Smith   a->Mvctx     = 0;
1375416022c9SBarry Smith   a->assembled = 0;
13768a729477SBarry Smith 
1377d6dfbf8fSBarry Smith   *newmat = mat;
1378d6dfbf8fSBarry Smith   return 0;
1379d6dfbf8fSBarry Smith }
1380c74985f6SBarry Smith 
1381a56f8943SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat matin,Mat *newmat,int cpvalues)
1382d6dfbf8fSBarry Smith {
1383d6dfbf8fSBarry Smith   Mat        mat;
1384416022c9SBarry Smith   Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data;
13852ee70a88SLois Curfman McInnes   int        ierr, len;
1386d6dfbf8fSBarry Smith 
1387416022c9SBarry Smith   if (!oldmat->assembled) SETERRQ(1,"MatCopyPrivate_MPIAIJ:Must assemble matrix");
1388416022c9SBarry Smith   *newmat       = 0;
13890452661fSBarry Smith   PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm);
1390a5a9c739SBarry Smith   PLogObjectCreate(mat);
13910452661fSBarry Smith   mat->data     = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a);
1392416022c9SBarry Smith   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
139344a69424SLois Curfman McInnes   mat->destroy  = MatDestroy_MPIAIJ;
139444a69424SLois Curfman McInnes   mat->view     = MatView_MPIAIJ;
1395d6dfbf8fSBarry Smith   mat->factor   = matin->factor;
1396d6dfbf8fSBarry Smith 
1397416022c9SBarry Smith   a->m          = oldmat->m;
1398416022c9SBarry Smith   a->n          = oldmat->n;
1399416022c9SBarry Smith   a->M          = oldmat->M;
1400416022c9SBarry Smith   a->N          = oldmat->N;
1401d6dfbf8fSBarry Smith 
1402416022c9SBarry Smith   a->assembled  = 1;
1403416022c9SBarry Smith   a->rstart     = oldmat->rstart;
1404416022c9SBarry Smith   a->rend       = oldmat->rend;
1405416022c9SBarry Smith   a->cstart     = oldmat->cstart;
1406416022c9SBarry Smith   a->cend       = oldmat->cend;
140717699dbbSLois Curfman McInnes   a->size       = oldmat->size;
140817699dbbSLois Curfman McInnes   a->rank       = oldmat->rank;
140964119d58SLois Curfman McInnes   a->insertmode = NOT_SET_VALUES;
1410d6dfbf8fSBarry Smith 
14110452661fSBarry Smith   a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners);
141217699dbbSLois Curfman McInnes   PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ));
141317699dbbSLois Curfman McInnes   PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int));
1414416022c9SBarry Smith   ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr);
14152ee70a88SLois Curfman McInnes   if (oldmat->colmap) {
14160452661fSBarry Smith     a->colmap = (int *) PetscMalloc((a->N)*sizeof(int));CHKPTRQ(a->colmap);
1417416022c9SBarry Smith     PLogObjectMemory(mat,(a->N)*sizeof(int));
1418416022c9SBarry Smith     PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int));
1419416022c9SBarry Smith   } else a->colmap = 0;
1420ec8511deSBarry Smith   if (oldmat->garray && (len = ((Mat_SeqAIJ *) (oldmat->B->data))->n)) {
14210452661fSBarry Smith     a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray);
1422464493b3SBarry Smith     PLogObjectMemory(mat,len*sizeof(int));
1423416022c9SBarry Smith     PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));
1424416022c9SBarry Smith   } else a->garray = 0;
1425d6dfbf8fSBarry Smith 
1426416022c9SBarry Smith   ierr =  VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr);
1427416022c9SBarry Smith   PLogObjectParent(mat,a->lvec);
1428a56f8943SBarry Smith   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr);
1429416022c9SBarry Smith   PLogObjectParent(mat,a->Mvctx);
1430416022c9SBarry Smith   ierr =  MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr);
1431416022c9SBarry Smith   PLogObjectParent(mat,a->A);
1432416022c9SBarry Smith   ierr =  MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr);
1433416022c9SBarry Smith   PLogObjectParent(mat,a->B);
14348a729477SBarry Smith   *newmat = mat;
14358a729477SBarry Smith   return 0;
14368a729477SBarry Smith }
1437416022c9SBarry Smith 
1438416022c9SBarry Smith #include "sysio.h"
1439416022c9SBarry Smith 
144002834360SBarry Smith int MatLoad_MPIAIJorMPIRow(Viewer bview,MatType type,Mat *newmat)
1441416022c9SBarry Smith {
1442d65a2f8fSBarry Smith   Mat          A;
1443416022c9SBarry Smith   int          i, nz, ierr, j,rstart, rend, fd;
1444d65a2f8fSBarry Smith   Scalar       *vals,*svals;
1445416022c9SBarry Smith   PetscObject  vobj = (PetscObject) bview;
1446416022c9SBarry Smith   MPI_Comm     comm = vobj->comm;
1447416022c9SBarry Smith   MPI_Status   status;
144817699dbbSLois Curfman McInnes   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols;
1449d65a2f8fSBarry Smith   int          *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols;
1450d65a2f8fSBarry Smith   int          tag = ((PetscObject)bview)->tag;
1451416022c9SBarry Smith 
145217699dbbSLois Curfman McInnes   MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank);
145317699dbbSLois Curfman McInnes   if (!rank) {
1454416022c9SBarry Smith     ierr = ViewerFileGetDescriptor_Private(bview,&fd); CHKERRQ(ierr);
1455416022c9SBarry Smith     ierr = SYRead(fd,(char *)header,4,SYINT); CHKERRQ(ierr);
145602834360SBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:not matrix object");
1457416022c9SBarry Smith   }
1458416022c9SBarry Smith 
1459416022c9SBarry Smith   MPI_Bcast(header+1,3,MPI_INT,0,comm);
1460416022c9SBarry Smith   M = header[1]; N = header[2];
1461416022c9SBarry Smith   /* determine ownership of all rows */
146217699dbbSLois Curfman McInnes   m = M/size + ((M % size) > rank);
14630452661fSBarry Smith   rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners);
1464416022c9SBarry Smith   MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);
1465416022c9SBarry Smith   rowners[0] = 0;
146617699dbbSLois Curfman McInnes   for ( i=2; i<=size; i++ ) {
1467416022c9SBarry Smith     rowners[i] += rowners[i-1];
1468416022c9SBarry Smith   }
146917699dbbSLois Curfman McInnes   rstart = rowners[rank];
147017699dbbSLois Curfman McInnes   rend   = rowners[rank+1];
1471416022c9SBarry Smith 
1472416022c9SBarry Smith   /* distribute row lengths to all processors */
14730452661fSBarry Smith   ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens);
1474416022c9SBarry Smith   offlens = ourlens + (rend-rstart);
147517699dbbSLois Curfman McInnes   if (!rank) {
14760452661fSBarry Smith     rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths);
1477416022c9SBarry Smith     ierr = SYRead(fd,rowlengths,M,SYINT); CHKERRQ(ierr);
14780452661fSBarry Smith     sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts);
147917699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i];
1480d65a2f8fSBarry Smith     MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);
14810452661fSBarry Smith     PetscFree(sndcounts);
1482416022c9SBarry Smith   }
1483416022c9SBarry Smith   else {
1484416022c9SBarry Smith     MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);
1485416022c9SBarry Smith   }
1486416022c9SBarry Smith 
148717699dbbSLois Curfman McInnes   if (!rank) {
1488416022c9SBarry Smith     /* calculate the number of nonzeros on each processor */
14890452661fSBarry Smith     procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz);
1490cddf8d76SBarry Smith     PetscMemzero(procsnz,size*sizeof(int));
149117699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) {
1492416022c9SBarry Smith       for ( j=rowners[i]; j< rowners[i+1]; j++ ) {
1493416022c9SBarry Smith         procsnz[i] += rowlengths[j];
1494416022c9SBarry Smith       }
1495416022c9SBarry Smith     }
14960452661fSBarry Smith     PetscFree(rowlengths);
1497416022c9SBarry Smith 
1498416022c9SBarry Smith     /* determine max buffer needed and allocate it */
1499416022c9SBarry Smith     maxnz = 0;
150017699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) {
15010452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
1502416022c9SBarry Smith     }
15030452661fSBarry Smith     cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols);
1504416022c9SBarry Smith 
1505416022c9SBarry Smith     /* read in my part of the matrix column indices  */
1506416022c9SBarry Smith     nz = procsnz[0];
15070452661fSBarry Smith     mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
1508d65a2f8fSBarry Smith     ierr = SYRead(fd,mycols,nz,SYINT); CHKERRQ(ierr);
1509d65a2f8fSBarry Smith 
1510d65a2f8fSBarry Smith     /* read in every one elses and ship off */
151117699dbbSLois Curfman McInnes     for ( i=1; i<size; i++ ) {
1512d65a2f8fSBarry Smith       nz = procsnz[i];
1513416022c9SBarry Smith       ierr = SYRead(fd,cols,nz,SYINT); CHKERRQ(ierr);
1514d65a2f8fSBarry Smith       MPI_Send(cols,nz,MPI_INT,i,tag,comm);
1515d65a2f8fSBarry Smith     }
15160452661fSBarry Smith     PetscFree(cols);
1517416022c9SBarry Smith   }
1518416022c9SBarry Smith   else {
1519416022c9SBarry Smith     /* determine buffer space needed for message */
1520416022c9SBarry Smith     nz = 0;
1521416022c9SBarry Smith     for ( i=0; i<m; i++ ) {
1522416022c9SBarry Smith       nz += ourlens[i];
1523416022c9SBarry Smith     }
15240452661fSBarry Smith     mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
1525416022c9SBarry Smith 
1526416022c9SBarry Smith     /* receive message of column indices*/
1527d65a2f8fSBarry Smith     MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);
1528416022c9SBarry Smith     MPI_Get_count(&status,MPI_INT,&maxnz);
152902834360SBarry Smith     if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file");
1530416022c9SBarry Smith   }
1531416022c9SBarry Smith 
1532416022c9SBarry Smith   /* loop over local rows, determining number of off diagonal entries */
1533cddf8d76SBarry Smith   PetscMemzero(offlens,m*sizeof(int));
1534416022c9SBarry Smith   jj = 0;
1535416022c9SBarry Smith   for ( i=0; i<m; i++ ) {
1536416022c9SBarry Smith     for ( j=0; j<ourlens[i]; j++ ) {
1537d65a2f8fSBarry Smith       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
1538416022c9SBarry Smith       jj++;
1539416022c9SBarry Smith     }
1540416022c9SBarry Smith   }
1541d65a2f8fSBarry Smith 
1542d65a2f8fSBarry Smith   /* create our matrix */
1543416022c9SBarry Smith   for ( i=0; i<m; i++ ) {
1544416022c9SBarry Smith     ourlens[i] -= offlens[i];
1545416022c9SBarry Smith   }
1546d65a2f8fSBarry Smith   if (type == MATMPIAIJ) {
1547d65a2f8fSBarry Smith     ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr);
1548d65a2f8fSBarry Smith   }
1549d65a2f8fSBarry Smith   else if (type == MATMPIROW) {
1550d65a2f8fSBarry Smith     ierr = MatCreateMPIRow(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr);
1551d65a2f8fSBarry Smith   }
1552d65a2f8fSBarry Smith   A = *newmat;
1553d65a2f8fSBarry Smith   MatSetOption(A,COLUMNS_SORTED);
1554d65a2f8fSBarry Smith   for ( i=0; i<m; i++ ) {
1555d65a2f8fSBarry Smith     ourlens[i] += offlens[i];
1556d65a2f8fSBarry Smith   }
1557416022c9SBarry Smith 
155817699dbbSLois Curfman McInnes   if (!rank) {
15590452661fSBarry Smith     vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals);
1560416022c9SBarry Smith 
1561416022c9SBarry Smith     /* read in my part of the matrix numerical values  */
1562416022c9SBarry Smith     nz = procsnz[0];
1563416022c9SBarry Smith     ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr);
1564d65a2f8fSBarry Smith 
1565d65a2f8fSBarry Smith     /* insert into matrix */
1566d65a2f8fSBarry Smith     jj      = rstart;
1567d65a2f8fSBarry Smith     smycols = mycols;
1568d65a2f8fSBarry Smith     svals   = vals;
1569d65a2f8fSBarry Smith     for ( i=0; i<m; i++ ) {
1570d65a2f8fSBarry Smith       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1571d65a2f8fSBarry Smith       smycols += ourlens[i];
1572d65a2f8fSBarry Smith       svals   += ourlens[i];
1573d65a2f8fSBarry Smith       jj++;
1574416022c9SBarry Smith     }
1575416022c9SBarry Smith 
1576d65a2f8fSBarry Smith     /* read in other processors and ship out */
157717699dbbSLois Curfman McInnes     for ( i=1; i<size; i++ ) {
1578416022c9SBarry Smith       nz = procsnz[i];
1579416022c9SBarry Smith       ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr);
1580d65a2f8fSBarry Smith       MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);
1581416022c9SBarry Smith     }
15820452661fSBarry Smith     PetscFree(procsnz);
1583416022c9SBarry Smith   }
1584d65a2f8fSBarry Smith   else {
1585d65a2f8fSBarry Smith     /* receive numeric values */
15860452661fSBarry Smith     vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals);
1587416022c9SBarry Smith 
1588d65a2f8fSBarry Smith     /* receive message of values*/
1589d65a2f8fSBarry Smith     MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);
1590d65a2f8fSBarry Smith     MPI_Get_count(&status,MPIU_SCALAR,&maxnz);
159102834360SBarry Smith     if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file");
1592d65a2f8fSBarry Smith 
1593d65a2f8fSBarry Smith     /* insert into matrix */
1594d65a2f8fSBarry Smith     jj      = rstart;
1595d65a2f8fSBarry Smith     smycols = mycols;
1596d65a2f8fSBarry Smith     svals   = vals;
1597d65a2f8fSBarry Smith     for ( i=0; i<m; i++ ) {
1598d65a2f8fSBarry Smith       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1599d65a2f8fSBarry Smith       smycols += ourlens[i];
1600d65a2f8fSBarry Smith       svals   += ourlens[i];
1601d65a2f8fSBarry Smith       jj++;
1602d65a2f8fSBarry Smith     }
1603d65a2f8fSBarry Smith   }
16040452661fSBarry Smith   PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners);
1605d65a2f8fSBarry Smith 
1606d65a2f8fSBarry Smith   ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
1607d65a2f8fSBarry Smith   ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
1608416022c9SBarry Smith   return 0;
1609416022c9SBarry Smith }
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