1cb512458SBarry Smith #ifndef lint 2*d7e8b826SBarry Smith static char vcid[] = "$Id: mpiaij.c,v 1.98 1995/11/06 21:31:33 bsmith Exp bsmith $"; 3cb512458SBarry Smith #endif 48a729477SBarry Smith 51eb62cbbSBarry Smith #include "mpiaij.h" 68a729477SBarry Smith #include "vec/vecimpl.h" 7d6dfbf8fSBarry Smith #include "inline/spops.h" 88a729477SBarry Smith 99e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column 109e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 119e25ed09SBarry Smith storage of the matrix. This is done in a non scable way since the 129e25ed09SBarry Smith length of colmap equals the global matrix length. 139e25ed09SBarry Smith */ 14b7c46309SBarry Smith static int CreateColmap_Private(Mat mat) 159e25ed09SBarry Smith { 1644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 17ec8511deSBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data; 18416022c9SBarry Smith int n = B->n,i,shift = B->indexshift; 19dbb450caSBarry Smith 200452661fSBarry Smith aij->colmap = (int *) PetscMalloc(aij->N*sizeof(int));CHKPTRQ(aij->colmap); 21464493b3SBarry Smith PLogObjectMemory(mat,aij->N*sizeof(int)); 22cddf8d76SBarry Smith PetscMemzero(aij->colmap,aij->N*sizeof(int)); 23dbb450caSBarry Smith for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i-shift; 249e25ed09SBarry Smith return 0; 259e25ed09SBarry Smith } 269e25ed09SBarry Smith 272493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat); 282493cbb0SBarry Smith 2951c98ccdSLois Curfman McInnes static int MatGetReordering_MPIAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm) 30299609e3SLois Curfman McInnes { 31299609e3SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 32299609e3SLois Curfman McInnes int ierr; 3317699dbbSLois Curfman McInnes if (aij->size == 1) { 3451c98ccdSLois Curfman McInnes ierr = MatGetReordering(aij->A,type,rperm,cperm); CHKERRQ(ierr); 3548d91487SBarry Smith } else SETERRQ(1,"MatGetReordering_MPIAIJ:not supported in parallel"); 36299609e3SLois Curfman McInnes return 0; 37299609e3SLois Curfman McInnes } 38299609e3SLois Curfman McInnes 392ee70a88SLois Curfman McInnes static int MatSetValues_MPIAIJ(Mat mat,int m,int *idxm,int n, 401eb62cbbSBarry Smith int *idxn,Scalar *v,InsertMode addv) 418a729477SBarry Smith { 4244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 43dbb450caSBarry Smith Mat_SeqAIJ *C = (Mat_SeqAIJ*) aij->A->data; 441eb62cbbSBarry Smith int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 451eb62cbbSBarry Smith int cstart = aij->cstart, cend = aij->cend,row,col; 46dbb450caSBarry Smith int shift = C->indexshift; 478a729477SBarry Smith 4864119d58SLois Curfman McInnes if (aij->insertmode != NOT_SET_VALUES && aij->insertmode != addv) { 4948d91487SBarry Smith SETERRQ(1,"MatSetValues_MPIAIJ:Cannot mix inserts and adds"); 508a729477SBarry Smith } 511eb62cbbSBarry Smith aij->insertmode = addv; 528a729477SBarry Smith for ( i=0; i<m; i++ ) { 53bbb6d6a8SBarry Smith if (idxm[i] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative row"); 54bbb6d6a8SBarry Smith if (idxm[i] >= aij->M) SETERRQ(1,"MatSetValues_MPIAIJ:Row too large"); 551eb62cbbSBarry Smith if (idxm[i] >= rstart && idxm[i] < rend) { 561eb62cbbSBarry Smith row = idxm[i] - rstart; 571eb62cbbSBarry Smith for ( j=0; j<n; j++ ) { 58bbb6d6a8SBarry Smith if (idxn[j] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative column"); 59bbb6d6a8SBarry Smith if (idxn[j] >= aij->N) SETERRQ(1,"MatSetValues_MPIAIJ:Col too large"); 601eb62cbbSBarry Smith if (idxn[j] >= cstart && idxn[j] < cend){ 611eb62cbbSBarry Smith col = idxn[j] - cstart; 6278b31e54SBarry Smith ierr = MatSetValues(aij->A,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr); 631eb62cbbSBarry Smith } 641eb62cbbSBarry Smith else { 65d6dfbf8fSBarry Smith if (aij->assembled) { 66b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 67dbb450caSBarry Smith col = aij->colmap[idxn[j]] + shift; 68ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 692493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 702493cbb0SBarry Smith col = idxn[j]; 71d6dfbf8fSBarry Smith } 729e25ed09SBarry Smith } 739e25ed09SBarry Smith else col = idxn[j]; 7478b31e54SBarry Smith ierr = MatSetValues(aij->B,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr); 751eb62cbbSBarry Smith } 761eb62cbbSBarry Smith } 771eb62cbbSBarry Smith } 781eb62cbbSBarry Smith else { 79416022c9SBarry Smith ierr = StashValues_Private(&aij->stash,idxm[i],n,idxn,v+i*n,addv);CHKERRQ(ierr); 801eb62cbbSBarry Smith } 818a729477SBarry Smith } 828a729477SBarry Smith return 0; 838a729477SBarry Smith } 848a729477SBarry Smith 85fc76ce87SLois Curfman McInnes static int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode) 868a729477SBarry Smith { 8744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 88d6dfbf8fSBarry Smith MPI_Comm comm = mat->comm; 8917699dbbSLois Curfman McInnes int size = aij->size, *owners = aij->rowners; 9017699dbbSLois Curfman McInnes int rank = aij->rank,tag = mat->tag, *owner,*starts,count,ierr; 911eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 926abc6512SBarry Smith int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 931eb62cbbSBarry Smith InsertMode addv; 941eb62cbbSBarry Smith Scalar *rvalues,*svalues; 951eb62cbbSBarry Smith 961eb62cbbSBarry Smith /* make sure all processors are either in INSERTMODE or ADDMODE */ 97d65a2f8fSBarry Smith MPI_Allreduce(&aij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm); 98dbb450caSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 99bbb6d6a8SBarry Smith SETERRQ(1,"MatAssemblyBegin_MPIAIJ:Some processors inserted others added"); 1001eb62cbbSBarry Smith } 1011eb62cbbSBarry Smith aij->insertmode = addv; /* in case this processor had no cache */ 1021eb62cbbSBarry Smith 1031eb62cbbSBarry Smith /* first count number of contributors to each processor */ 1040452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 105cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 1060452661fSBarry Smith owner = (int *) PetscMalloc( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 1071eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1081eb62cbbSBarry Smith idx = aij->stash.idx[i]; 10917699dbbSLois Curfman McInnes for ( j=0; j<size; j++ ) { 1101eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 1111eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; break; 1128a729477SBarry Smith } 1138a729477SBarry Smith } 1148a729477SBarry Smith } 11517699dbbSLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 1161eb62cbbSBarry Smith 1171eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 1180452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 11917699dbbSLois Curfman McInnes MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm); 12017699dbbSLois Curfman McInnes nreceives = work[rank]; 12117699dbbSLois Curfman McInnes MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 12217699dbbSLois Curfman McInnes nmax = work[rank]; 1230452661fSBarry Smith PetscFree(work); 1241eb62cbbSBarry Smith 1251eb62cbbSBarry Smith /* post receives: 1261eb62cbbSBarry Smith 1) each message will consist of ordered pairs 1271eb62cbbSBarry Smith (global index,value) we store the global index as a double 128d6dfbf8fSBarry Smith to simplify the message passing. 1291eb62cbbSBarry Smith 2) since we don't know how long each individual message is we 1301eb62cbbSBarry Smith allocate the largest needed buffer for each receive. Potentially 1311eb62cbbSBarry Smith this is a lot of wasted space. 1321eb62cbbSBarry Smith 1331eb62cbbSBarry Smith 1341eb62cbbSBarry Smith This could be done better. 1351eb62cbbSBarry Smith */ 1360452661fSBarry Smith rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 13778b31e54SBarry Smith CHKPTRQ(rvalues); 1380452661fSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request)); 13978b31e54SBarry Smith CHKPTRQ(recv_waits); 1401eb62cbbSBarry Smith for ( i=0; i<nreceives; i++ ) { 141416022c9SBarry Smith MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 1421eb62cbbSBarry Smith comm,recv_waits+i); 1431eb62cbbSBarry Smith } 1441eb62cbbSBarry Smith 1451eb62cbbSBarry Smith /* do sends: 1461eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 1471eb62cbbSBarry Smith the ith processor 1481eb62cbbSBarry Smith */ 1490452661fSBarry Smith svalues = (Scalar *) PetscMalloc(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 1500452661fSBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 15178b31e54SBarry Smith CHKPTRQ(send_waits); 1520452661fSBarry Smith starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 1531eb62cbbSBarry Smith starts[0] = 0; 15417699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1551eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1561eb62cbbSBarry Smith svalues[3*starts[owner[i]]] = (Scalar) aij->stash.idx[i]; 1571eb62cbbSBarry Smith svalues[3*starts[owner[i]]+1] = (Scalar) aij->stash.idy[i]; 1581eb62cbbSBarry Smith svalues[3*(starts[owner[i]]++)+2] = aij->stash.array[i]; 1591eb62cbbSBarry Smith } 1600452661fSBarry Smith PetscFree(owner); 1611eb62cbbSBarry Smith starts[0] = 0; 16217699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1631eb62cbbSBarry Smith count = 0; 16417699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 1651eb62cbbSBarry Smith if (procs[i]) { 166416022c9SBarry Smith MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag, 1671eb62cbbSBarry Smith comm,send_waits+count++); 1681eb62cbbSBarry Smith } 1691eb62cbbSBarry Smith } 1700452661fSBarry Smith PetscFree(starts); PetscFree(nprocs); 1711eb62cbbSBarry Smith 1721eb62cbbSBarry Smith /* Free cache space */ 17378b31e54SBarry Smith ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr); 1741eb62cbbSBarry Smith 1751eb62cbbSBarry Smith aij->svalues = svalues; aij->rvalues = rvalues; 1761eb62cbbSBarry Smith aij->nsends = nsends; aij->nrecvs = nreceives; 1771eb62cbbSBarry Smith aij->send_waits = send_waits; aij->recv_waits = recv_waits; 1781eb62cbbSBarry Smith aij->rmax = nmax; 1791eb62cbbSBarry Smith 1801eb62cbbSBarry Smith return 0; 1811eb62cbbSBarry Smith } 18244a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat); 1831eb62cbbSBarry Smith 184fc76ce87SLois Curfman McInnes static int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode) 1851eb62cbbSBarry Smith { 18644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 187dbb450caSBarry Smith Mat_SeqAIJ *C = (Mat_SeqAIJ *) aij->A->data; 1881eb62cbbSBarry Smith MPI_Status *send_status,recv_status; 189416022c9SBarry Smith int imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr; 190416022c9SBarry Smith int row,col,other_disassembled,shift = C->indexshift; 1911eb62cbbSBarry Smith Scalar *values,val; 1921eb62cbbSBarry Smith InsertMode addv = aij->insertmode; 1931eb62cbbSBarry Smith 1941eb62cbbSBarry Smith /* wait on receives */ 1951eb62cbbSBarry Smith while (count) { 196d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status); 1971eb62cbbSBarry Smith /* unpack receives into our local space */ 198d6dfbf8fSBarry Smith values = aij->rvalues + 3*imdex*aij->rmax; 199c60448a5SBarry Smith MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 2001eb62cbbSBarry Smith n = n/3; 2011eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 2021eb62cbbSBarry Smith row = (int) PETSCREAL(values[3*i]) - aij->rstart; 2031eb62cbbSBarry Smith col = (int) PETSCREAL(values[3*i+1]); 2041eb62cbbSBarry Smith val = values[3*i+2]; 2051eb62cbbSBarry Smith if (col >= aij->cstart && col < aij->cend) { 2061eb62cbbSBarry Smith col -= aij->cstart; 2071eb62cbbSBarry Smith MatSetValues(aij->A,1,&row,1,&col,&val,addv); 2081eb62cbbSBarry Smith } 2091eb62cbbSBarry Smith else { 210d6dfbf8fSBarry Smith if (aij->assembled) { 211b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 212dbb450caSBarry Smith col = aij->colmap[col] + shift; 213ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 2142493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2152493cbb0SBarry Smith col = (int) PETSCREAL(values[3*i+1]); 216d6dfbf8fSBarry Smith } 2179e25ed09SBarry Smith } 2181eb62cbbSBarry Smith MatSetValues(aij->B,1,&row,1,&col,&val,addv); 2191eb62cbbSBarry Smith } 2201eb62cbbSBarry Smith } 2211eb62cbbSBarry Smith count--; 2221eb62cbbSBarry Smith } 2230452661fSBarry Smith PetscFree(aij->recv_waits); PetscFree(aij->rvalues); 2241eb62cbbSBarry Smith 2251eb62cbbSBarry Smith /* wait on sends */ 2261eb62cbbSBarry Smith if (aij->nsends) { 2270452661fSBarry Smith send_status = (MPI_Status *) PetscMalloc(aij->nsends*sizeof(MPI_Status)); 22878b31e54SBarry Smith CHKPTRQ(send_status); 2291eb62cbbSBarry Smith MPI_Waitall(aij->nsends,aij->send_waits,send_status); 2300452661fSBarry Smith PetscFree(send_status); 2311eb62cbbSBarry Smith } 2320452661fSBarry Smith PetscFree(aij->send_waits); PetscFree(aij->svalues); 2331eb62cbbSBarry Smith 23464119d58SLois Curfman McInnes aij->insertmode = NOT_SET_VALUES; 23578b31e54SBarry Smith ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr); 23678b31e54SBarry Smith ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr); 2371eb62cbbSBarry Smith 2382493cbb0SBarry Smith /* determine if any processor has disassembled, if so we must 2392493cbb0SBarry Smith also disassemble ourselfs, in order that we may reassemble. */ 240416022c9SBarry Smith MPI_Allreduce(&aij->assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm); 2412493cbb0SBarry Smith if (aij->assembled && !other_disassembled) { 2422493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2432493cbb0SBarry Smith } 2442493cbb0SBarry Smith 2455e42470aSBarry Smith if (!aij->assembled && mode == FINAL_ASSEMBLY) { 24678b31e54SBarry Smith ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr); 247d6dfbf8fSBarry Smith aij->assembled = 1; 2485e42470aSBarry Smith } 24978b31e54SBarry Smith ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr); 25078b31e54SBarry Smith ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr); 2515e42470aSBarry Smith 2528a729477SBarry Smith return 0; 2538a729477SBarry Smith } 2548a729477SBarry Smith 2552ee70a88SLois Curfman McInnes static int MatZeroEntries_MPIAIJ(Mat A) 2561eb62cbbSBarry Smith { 25744a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 258dbd7a890SLois Curfman McInnes int ierr; 25978b31e54SBarry Smith ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 26078b31e54SBarry Smith ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 2611eb62cbbSBarry Smith return 0; 2621eb62cbbSBarry Smith } 2631eb62cbbSBarry Smith 2641eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the 2651eb62cbbSBarry Smith matrix is square and the column and row owerships are identical. 2661eb62cbbSBarry Smith This is a BUG. The only way to fix it seems to be to access 2671eb62cbbSBarry Smith aij->A and aij->B directly and not through the MatZeroRows() 2681eb62cbbSBarry Smith routine. 2691eb62cbbSBarry Smith */ 27044a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag) 2711eb62cbbSBarry Smith { 27244a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 27317699dbbSLois Curfman McInnes int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 2746abc6512SBarry Smith int *procs,*nprocs,j,found,idx,nsends,*work; 27517699dbbSLois Curfman McInnes int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 2765392566eSBarry Smith int *rvalues,tag = A->tag,count,base,slen,n,*source; 277d6dfbf8fSBarry Smith int *lens,imdex,*lrows,*values; 278d6dfbf8fSBarry Smith MPI_Comm comm = A->comm; 2791eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 2801eb62cbbSBarry Smith MPI_Status recv_status,*send_status; 2811eb62cbbSBarry Smith IS istmp; 2821eb62cbbSBarry Smith 28348d91487SBarry Smith if (!l->assembled) SETERRQ(1,"MatZeroRows_MPIAIJ:Must assemble matrix"); 28478b31e54SBarry Smith ierr = ISGetLocalSize(is,&N); CHKERRQ(ierr); 28578b31e54SBarry Smith ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 2861eb62cbbSBarry Smith 2871eb62cbbSBarry Smith /* first count number of contributors to each processor */ 2880452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 289cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 2900452661fSBarry Smith owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 2911eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 2921eb62cbbSBarry Smith idx = rows[i]; 2931eb62cbbSBarry Smith found = 0; 29417699dbbSLois Curfman McInnes for ( j=0; j<size; j++ ) { 2951eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 2961eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 2971eb62cbbSBarry Smith } 2981eb62cbbSBarry Smith } 299bbb6d6a8SBarry Smith if (!found) SETERRQ(1,"MatZeroRows_MPIAIJ:Index out of range"); 3001eb62cbbSBarry Smith } 30117699dbbSLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 3021eb62cbbSBarry Smith 3031eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 3040452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 30517699dbbSLois Curfman McInnes MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm); 30617699dbbSLois Curfman McInnes nrecvs = work[rank]; 30717699dbbSLois Curfman McInnes MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 30817699dbbSLois Curfman McInnes nmax = work[rank]; 3090452661fSBarry Smith PetscFree(work); 3101eb62cbbSBarry Smith 3111eb62cbbSBarry Smith /* post receives: */ 3120452661fSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 31378b31e54SBarry Smith CHKPTRQ(rvalues); 3140452661fSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request)); 31578b31e54SBarry Smith CHKPTRQ(recv_waits); 3161eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 317416022c9SBarry Smith MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 3181eb62cbbSBarry Smith } 3191eb62cbbSBarry Smith 3201eb62cbbSBarry Smith /* do sends: 3211eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 3221eb62cbbSBarry Smith the ith processor 3231eb62cbbSBarry Smith */ 3240452661fSBarry Smith svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 3250452661fSBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 32678b31e54SBarry Smith CHKPTRQ(send_waits); 3270452661fSBarry Smith starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 3281eb62cbbSBarry Smith starts[0] = 0; 32917699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3301eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3311eb62cbbSBarry Smith svalues[starts[owner[i]]++] = rows[i]; 3321eb62cbbSBarry Smith } 3331eb62cbbSBarry Smith ISRestoreIndices(is,&rows); 3341eb62cbbSBarry Smith 3351eb62cbbSBarry Smith starts[0] = 0; 33617699dbbSLois Curfman McInnes for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3371eb62cbbSBarry Smith count = 0; 33817699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 3391eb62cbbSBarry Smith if (procs[i]) { 340416022c9SBarry Smith MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++); 3411eb62cbbSBarry Smith } 3421eb62cbbSBarry Smith } 3430452661fSBarry Smith PetscFree(starts); 3441eb62cbbSBarry Smith 34517699dbbSLois Curfman McInnes base = owners[rank]; 3461eb62cbbSBarry Smith 3471eb62cbbSBarry Smith /* wait on receives */ 3480452661fSBarry Smith lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 3491eb62cbbSBarry Smith source = lens + nrecvs; 3501eb62cbbSBarry Smith count = nrecvs; slen = 0; 3511eb62cbbSBarry Smith while (count) { 352d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 3531eb62cbbSBarry Smith /* unpack receives into our local space */ 3541eb62cbbSBarry Smith MPI_Get_count(&recv_status,MPI_INT,&n); 355d6dfbf8fSBarry Smith source[imdex] = recv_status.MPI_SOURCE; 356d6dfbf8fSBarry Smith lens[imdex] = n; 3571eb62cbbSBarry Smith slen += n; 3581eb62cbbSBarry Smith count--; 3591eb62cbbSBarry Smith } 3600452661fSBarry Smith PetscFree(recv_waits); 3611eb62cbbSBarry Smith 3621eb62cbbSBarry Smith /* move the data into the send scatter */ 3630452661fSBarry Smith lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 3641eb62cbbSBarry Smith count = 0; 3651eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 3661eb62cbbSBarry Smith values = rvalues + i*nmax; 3671eb62cbbSBarry Smith for ( j=0; j<lens[i]; j++ ) { 3681eb62cbbSBarry Smith lrows[count++] = values[j] - base; 3691eb62cbbSBarry Smith } 3701eb62cbbSBarry Smith } 3710452661fSBarry Smith PetscFree(rvalues); PetscFree(lens); 3720452661fSBarry Smith PetscFree(owner); PetscFree(nprocs); 3731eb62cbbSBarry Smith 3741eb62cbbSBarry Smith /* actually zap the local rows */ 375416022c9SBarry Smith ierr = ISCreateSeq(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 376464493b3SBarry Smith PLogObjectParent(A,istmp); 3770452661fSBarry Smith PetscFree(lrows); 37878b31e54SBarry Smith ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 37978b31e54SBarry Smith ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 38078b31e54SBarry Smith ierr = ISDestroy(istmp); CHKERRQ(ierr); 3811eb62cbbSBarry Smith 3821eb62cbbSBarry Smith /* wait on sends */ 3831eb62cbbSBarry Smith if (nsends) { 3840452661fSBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status)); 38578b31e54SBarry Smith CHKPTRQ(send_status); 3861eb62cbbSBarry Smith MPI_Waitall(nsends,send_waits,send_status); 3870452661fSBarry Smith PetscFree(send_status); 3881eb62cbbSBarry Smith } 3890452661fSBarry Smith PetscFree(send_waits); PetscFree(svalues); 3901eb62cbbSBarry Smith 3911eb62cbbSBarry Smith return 0; 3921eb62cbbSBarry Smith } 3931eb62cbbSBarry Smith 394416022c9SBarry Smith static int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy) 3951eb62cbbSBarry Smith { 396416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 3971eb62cbbSBarry Smith int ierr; 398416022c9SBarry Smith 39948d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix"); 40064119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 401416022c9SBarry Smith ierr = MatMult(a->A,xx,yy); CHKERRQ(ierr); 40264119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 403416022c9SBarry Smith ierr = MatMultAdd(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 4041eb62cbbSBarry Smith return 0; 4051eb62cbbSBarry Smith } 4061eb62cbbSBarry Smith 407416022c9SBarry Smith static int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 408da3a660dSBarry Smith { 409416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 410da3a660dSBarry Smith int ierr; 41148d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix"); 41264119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 413416022c9SBarry Smith ierr = MatMultAdd(a->A,xx,yy,zz); CHKERRQ(ierr); 41464119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 415416022c9SBarry Smith ierr = MatMultAdd(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 416da3a660dSBarry Smith return 0; 417da3a660dSBarry Smith } 418da3a660dSBarry Smith 419416022c9SBarry Smith static int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy) 420da3a660dSBarry Smith { 421416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 422da3a660dSBarry Smith int ierr; 423da3a660dSBarry Smith 42448d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMulTrans_MPIAIJ:must assemble matrix"); 425da3a660dSBarry Smith /* do nondiagonal part */ 426416022c9SBarry Smith ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr); 427da3a660dSBarry Smith /* send it on its way */ 428416022c9SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES, 42964119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 430da3a660dSBarry Smith /* do local part */ 431416022c9SBarry Smith ierr = MatMultTrans(a->A,xx,yy); CHKERRQ(ierr); 432da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 433da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 434da3a660dSBarry Smith /* but is not perhaps always true. */ 435416022c9SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES, 43664119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 437da3a660dSBarry Smith return 0; 438da3a660dSBarry Smith } 439da3a660dSBarry Smith 440416022c9SBarry Smith static int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 441da3a660dSBarry Smith { 442416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 443da3a660dSBarry Smith int ierr; 444da3a660dSBarry Smith 44548d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMulTransAdd_MPIAIJ:must assemble matrix"); 446da3a660dSBarry Smith /* do nondiagonal part */ 447416022c9SBarry Smith ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr); 448da3a660dSBarry Smith /* send it on its way */ 449416022c9SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES, 45064119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 451da3a660dSBarry Smith /* do local part */ 452416022c9SBarry Smith ierr = MatMultTransAdd(a->A,xx,yy,zz); CHKERRQ(ierr); 453da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 454da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 455da3a660dSBarry Smith /* but is not perhaps always true. */ 456416022c9SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES, 45764119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 458da3a660dSBarry Smith return 0; 459da3a660dSBarry Smith } 460da3a660dSBarry Smith 4611eb62cbbSBarry Smith /* 4621eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 4631eb62cbbSBarry Smith diagonal block 4641eb62cbbSBarry Smith */ 465416022c9SBarry Smith static int MatGetDiagonal_MPIAIJ(Mat A,Vec v) 4661eb62cbbSBarry Smith { 467416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 46848d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatGetDiag_MPIAIJ:must assemble matrix"); 469416022c9SBarry Smith return MatGetDiagonal(a->A,v); 4701eb62cbbSBarry Smith } 4711eb62cbbSBarry Smith 47244a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj) 4731eb62cbbSBarry Smith { 4741eb62cbbSBarry Smith Mat mat = (Mat) obj; 47544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 4761eb62cbbSBarry Smith int ierr; 477a5a9c739SBarry Smith #if defined(PETSC_LOG) 4786e35fa57SLois Curfman McInnes PLogObjectState(obj,"Rows=%d, Cols=%d",aij->M,aij->N); 479a5a9c739SBarry Smith #endif 4800452661fSBarry Smith PetscFree(aij->rowners); 48178b31e54SBarry Smith ierr = MatDestroy(aij->A); CHKERRQ(ierr); 48278b31e54SBarry Smith ierr = MatDestroy(aij->B); CHKERRQ(ierr); 4830452661fSBarry Smith if (aij->colmap) PetscFree(aij->colmap); 4840452661fSBarry Smith if (aij->garray) PetscFree(aij->garray); 4851eb62cbbSBarry Smith if (aij->lvec) VecDestroy(aij->lvec); 486a56f8943SBarry Smith if (aij->Mvctx) VecScatterDestroy(aij->Mvctx); 4870452661fSBarry Smith PetscFree(aij); 488a5a9c739SBarry Smith PLogObjectDestroy(mat); 4890452661fSBarry Smith PetscHeaderDestroy(mat); 4901eb62cbbSBarry Smith return 0; 4911eb62cbbSBarry Smith } 4927857610eSBarry Smith #include "draw.h" 493b16a3bb1SBarry Smith #include "pinclude/pviewer.h" 494ee50ffe9SBarry Smith 495416022c9SBarry Smith static int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer) 4961eb62cbbSBarry Smith { 497416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 498416022c9SBarry Smith int ierr; 499416022c9SBarry Smith 50017699dbbSLois Curfman McInnes if (aij->size == 1) { 501416022c9SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 502416022c9SBarry Smith } 503a523beb4SLois Curfman McInnes else SETERRQ(1,"MatView_MPIAIJ_Binary:Only uniprocessor output supported"); 504416022c9SBarry Smith return 0; 505416022c9SBarry Smith } 506416022c9SBarry Smith 507*d7e8b826SBarry Smith static int MatView_MPIAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer) 508416022c9SBarry Smith { 50944a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 510dbb450caSBarry Smith Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data; 511a56f8943SBarry Smith int ierr, format,shift = C->indexshift,rank; 512d13ab20cSBarry Smith PetscObject vobj = (PetscObject) viewer; 513d636dbe3SBarry Smith FILE *fd; 514416022c9SBarry Smith 515416022c9SBarry Smith if (vobj->type == ASCII_FILE_VIEWER || vobj->type == ASCII_FILES_VIEWER) { 516416022c9SBarry Smith ierr = ViewerFileGetFormat_Private(viewer,&format); 51708480c60SBarry Smith if (format == FILE_FORMAT_INFO_DETAILED) { 518a56f8943SBarry Smith int nz,nzalloc,mem; 519a56f8943SBarry Smith MPI_Comm_rank(mat->comm,&rank); 520a56f8943SBarry Smith ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr); 521a56f8943SBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&nz,&nzalloc,&mem); 522a56f8943SBarry Smith MPIU_Seq_begin(mat->comm,1); 523a56f8943SBarry Smith fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d \n",rank,aij->m,nz, 524a56f8943SBarry Smith nzalloc,mem); 52508480c60SBarry Smith ierr = MatGetInfo(aij->A,MAT_LOCAL,&nz,&nzalloc,&mem); 52608480c60SBarry Smith fprintf(fd,"[%d] on diagonal nz %d \n",rank,nz); 52708480c60SBarry Smith ierr = MatGetInfo(aij->B,MAT_LOCAL,&nz,&nzalloc,&mem); 52808480c60SBarry Smith fprintf(fd,"[%d] off diagonal nz %d \n",rank,nz); 529a56f8943SBarry Smith fflush(fd); 530a56f8943SBarry Smith MPIU_Seq_end(mat->comm,1); 531a56f8943SBarry Smith ierr = VecScatterView(aij->Mvctx,viewer); 532416022c9SBarry Smith return 0; 533416022c9SBarry Smith } 53408480c60SBarry Smith else if (format == FILE_FORMAT_INFO) { 53508480c60SBarry Smith return 0; 53608480c60SBarry Smith } 537416022c9SBarry Smith } 538416022c9SBarry Smith 539416022c9SBarry Smith if (vobj->type == ASCII_FILE_VIEWER) { 540d636dbe3SBarry Smith ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr); 5417f813858SBarry Smith MPIU_Seq_begin(mat->comm,1); 542d13ab20cSBarry Smith fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 54317699dbbSLois Curfman McInnes aij->rank,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart, 5441eb62cbbSBarry Smith aij->cend); 54578b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 54678b31e54SBarry Smith ierr = MatView(aij->B,viewer); CHKERRQ(ierr); 547d13ab20cSBarry Smith fflush(fd); 5487f813858SBarry Smith MPIU_Seq_end(mat->comm,1); 549d13ab20cSBarry Smith } 550416022c9SBarry Smith else { 551a56f8943SBarry Smith int size = aij->size; 552a56f8943SBarry Smith rank = aij->rank; 55317699dbbSLois Curfman McInnes if (size == 1) { 55478b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 55595373324SBarry Smith } 55695373324SBarry Smith else { 55795373324SBarry Smith /* assemble the entire matrix onto first processor. */ 55895373324SBarry Smith Mat A; 559ec8511deSBarry Smith Mat_SeqAIJ *Aloc; 5602eb8c8abSBarry Smith int M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct; 56195373324SBarry Smith Scalar *a; 5622ee70a88SLois Curfman McInnes 56317699dbbSLois Curfman McInnes if (!rank) { 564416022c9SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,0,0,0,&A);CHKERRQ(ierr); 56595373324SBarry Smith } 56695373324SBarry Smith else { 567416022c9SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,0,0,0,&A);CHKERRQ(ierr); 56895373324SBarry Smith } 569464493b3SBarry Smith PLogObjectParent(mat,A); 570416022c9SBarry Smith 57195373324SBarry Smith 57295373324SBarry Smith /* copy over the A part */ 573ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->A->data; 5742ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 57595373324SBarry Smith row = aij->rstart; 576dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;} 57795373324SBarry Smith for ( i=0; i<m; i++ ) { 578416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr); 57995373324SBarry Smith row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 58095373324SBarry Smith } 5812ee70a88SLois Curfman McInnes aj = Aloc->j; 582dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;} 58395373324SBarry Smith 58495373324SBarry Smith /* copy over the B part */ 585ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->B->data; 5862ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 58795373324SBarry Smith row = aij->rstart; 5880452661fSBarry Smith ct = cols = (int *) PetscMalloc( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols); 589dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];} 59095373324SBarry Smith for ( i=0; i<m; i++ ) { 591416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr); 59295373324SBarry Smith row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 59395373324SBarry Smith } 5940452661fSBarry Smith PetscFree(ct); 59578b31e54SBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 59678b31e54SBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 59717699dbbSLois Curfman McInnes if (!rank) { 59878b31e54SBarry Smith ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 59995373324SBarry Smith } 60078b31e54SBarry Smith ierr = MatDestroy(A); CHKERRQ(ierr); 60195373324SBarry Smith } 60295373324SBarry Smith } 6031eb62cbbSBarry Smith return 0; 6041eb62cbbSBarry Smith } 6051eb62cbbSBarry Smith 606416022c9SBarry Smith static int MatView_MPIAIJ(PetscObject obj,Viewer viewer) 607416022c9SBarry Smith { 608416022c9SBarry Smith Mat mat = (Mat) obj; 609416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 610416022c9SBarry Smith int ierr; 611416022c9SBarry Smith PetscObject vobj = (PetscObject) viewer; 612416022c9SBarry Smith 61348d91487SBarry Smith if (!aij->assembled) SETERRQ(1,"MatView_MPIAIJ:must assemble matrix"); 614416022c9SBarry Smith if (!viewer) { 615416022c9SBarry Smith viewer = STDOUT_VIEWER_SELF; vobj = (PetscObject) viewer; 616416022c9SBarry Smith } 617416022c9SBarry Smith if (vobj->cookie == DRAW_COOKIE && vobj->type == NULLWINDOW) return 0; 618416022c9SBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILE_VIEWER) { 619*d7e8b826SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 620416022c9SBarry Smith } 621416022c9SBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILES_VIEWER) { 622*d7e8b826SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 623*d7e8b826SBarry Smith } 624*d7e8b826SBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == MATLAB_VIEWER) { 625*d7e8b826SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 626416022c9SBarry Smith } 627416022c9SBarry Smith else if (vobj->cookie == DRAW_COOKIE) { 628*d7e8b826SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 629416022c9SBarry Smith } 630416022c9SBarry Smith else if (vobj->type == BINARY_FILE_VIEWER) { 631416022c9SBarry Smith return MatView_MPIAIJ_Binary(mat,viewer); 632416022c9SBarry Smith } 633416022c9SBarry Smith return 0; 634416022c9SBarry Smith } 635416022c9SBarry Smith 636ec8511deSBarry Smith extern int MatMarkDiag_SeqAIJ(Mat); 6371eb62cbbSBarry Smith /* 6381eb62cbbSBarry Smith This has to provide several versions. 6391eb62cbbSBarry Smith 6401eb62cbbSBarry Smith 1) per sequential 6411eb62cbbSBarry Smith 2) a) use only local smoothing updating outer values only once. 6421eb62cbbSBarry Smith b) local smoothing updating outer values each inner iteration 643d6dfbf8fSBarry Smith 3) color updating out values betwen colors. 6441eb62cbbSBarry Smith */ 645fc76ce87SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag, 646dbb450caSBarry Smith double fshift,int its,Vec xx) 6478a729477SBarry Smith { 64844a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 649d6dfbf8fSBarry Smith Mat AA = mat->A, BB = mat->B; 650ec8511deSBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data; 6516abc6512SBarry Smith Scalar zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts; 6526abc6512SBarry Smith int ierr,*idx, *diag; 653416022c9SBarry Smith int n = mat->n, m = mat->m, i,shift = A->indexshift; 654da3a660dSBarry Smith Vec tt; 6558a729477SBarry Smith 65648d91487SBarry Smith if (!mat->assembled) SETERRQ(1,"MatRelax_MPIAIJ:must assemble matrix"); 6571eb62cbbSBarry Smith 658d6dfbf8fSBarry Smith VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls); 659dbb450caSBarry Smith xs = x + shift; /* shift by one for index start of 1 */ 660dbb450caSBarry Smith ls = ls + shift; 661ec8511deSBarry Smith if (!A->diag) {if ((ierr = MatMarkDiag_SeqAIJ(AA))) return ierr;} 662d6dfbf8fSBarry Smith diag = A->diag; 663acb40c82SBarry Smith if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) { 66448d91487SBarry Smith SETERRQ(1,"MatRelax_MPIAIJ:Option not supported"); 665acb40c82SBarry Smith } 666da3a660dSBarry Smith if (flag & SOR_EISENSTAT) { 667da3a660dSBarry Smith /* Let A = L + U + D; where L is lower trianglar, 668da3a660dSBarry Smith U is upper triangular, E is diagonal; This routine applies 669da3a660dSBarry Smith 670da3a660dSBarry Smith (L + E)^{-1} A (U + E)^{-1} 671da3a660dSBarry Smith 672da3a660dSBarry Smith to a vector efficiently using Eisenstat's trick. This is for 673da3a660dSBarry Smith the case of SSOR preconditioner, so E is D/omega where omega 674da3a660dSBarry Smith is the relaxation factor. 675da3a660dSBarry Smith */ 67678b31e54SBarry Smith ierr = VecDuplicate(xx,&tt); CHKERRQ(ierr); 677464493b3SBarry Smith PLogObjectParent(matin,tt); 678da3a660dSBarry Smith VecGetArray(tt,&t); 679da3a660dSBarry Smith scale = (2.0/omega) - 1.0; 680da3a660dSBarry Smith /* x = (E + U)^{-1} b */ 681da3a660dSBarry Smith VecSet(&zero,mat->lvec); 68264119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 68378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 684da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 685da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 686dbb450caSBarry Smith idx = A->j + diag[i] + !shift; 687dbb450caSBarry Smith v = A->a + diag[i] + !shift; 688da3a660dSBarry Smith sum = b[i]; 689da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 690dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 691da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 692dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 693dbb450caSBarry Smith v = B->a + B->i[i] + shift; 694da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 695da3a660dSBarry Smith x[i] = omega*(sum/d); 696da3a660dSBarry Smith } 69764119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 69878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 699da3a660dSBarry Smith 700da3a660dSBarry Smith /* t = b - (2*E - D)x */ 701da3a660dSBarry Smith v = A->a; 702dbb450caSBarry Smith for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ + shift])*x[i]; } 703da3a660dSBarry Smith 704da3a660dSBarry Smith /* t = (E + L)^{-1}t */ 705dbb450caSBarry Smith ts = t + shift; /* shifted by one for index start of a or mat->j*/ 706da3a660dSBarry Smith diag = A->diag; 707da3a660dSBarry Smith VecSet(&zero,mat->lvec); 70864119d58SLois Curfman McInnes ierr = VecPipelineBegin(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 70978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 710da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 711da3a660dSBarry Smith n = diag[i] - A->i[i]; 712dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 713dbb450caSBarry Smith v = A->a + A->i[i] + shift; 714da3a660dSBarry Smith sum = t[i]; 715da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ts,v,idx,n); 716dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 717da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 718dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 719dbb450caSBarry Smith v = B->a + B->i[i] + shift; 720da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 721da3a660dSBarry Smith t[i] = omega*(sum/d); 722da3a660dSBarry Smith } 72364119d58SLois Curfman McInnes ierr = VecPipelineEnd(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 72478b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 725da3a660dSBarry Smith /* x = x + t */ 726da3a660dSBarry Smith for ( i=0; i<m; i++ ) { x[i] += t[i]; } 727da3a660dSBarry Smith VecDestroy(tt); 728da3a660dSBarry Smith return 0; 729da3a660dSBarry Smith } 730da3a660dSBarry Smith 7311eb62cbbSBarry Smith 732d6dfbf8fSBarry Smith if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){ 733da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 734da3a660dSBarry Smith VecSet(&zero,mat->lvec); VecSet(&zero,xx); 735da3a660dSBarry Smith } 736da3a660dSBarry Smith else { 73764119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 73878b31e54SBarry Smith CHKERRQ(ierr); 73964119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 74078b31e54SBarry Smith CHKERRQ(ierr); 741da3a660dSBarry Smith } 742d6dfbf8fSBarry Smith while (its--) { 743d6dfbf8fSBarry Smith /* go down through the rows */ 74464119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 74578b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 746d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 747d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 748dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 749dbb450caSBarry Smith v = A->a + A->i[i] + shift; 750d6dfbf8fSBarry Smith sum = b[i]; 751d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 752dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 753d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 754dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 755dbb450caSBarry Smith v = B->a + B->i[i] + shift; 756d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 757d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 758d6dfbf8fSBarry Smith } 75964119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 76078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 761d6dfbf8fSBarry Smith /* come up through the rows */ 76264119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 76378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 764d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 765d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 766dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 767dbb450caSBarry Smith v = A->a + A->i[i] + shift; 768d6dfbf8fSBarry Smith sum = b[i]; 769d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 770dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 771d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 772dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 773dbb450caSBarry Smith v = B->a + B->i[i] + shift; 774d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 775d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 776d6dfbf8fSBarry Smith } 77764119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 77878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 779d6dfbf8fSBarry Smith } 780d6dfbf8fSBarry Smith } 781d6dfbf8fSBarry Smith else if (flag & SOR_FORWARD_SWEEP){ 782da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 783da3a660dSBarry Smith VecSet(&zero,mat->lvec); 78464119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 78578b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 786da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 787da3a660dSBarry Smith n = diag[i] - A->i[i]; 788dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 789dbb450caSBarry Smith v = A->a + A->i[i] + shift; 790da3a660dSBarry Smith sum = b[i]; 791da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 792dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 793da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 794dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 795dbb450caSBarry Smith v = B->a + B->i[i] + shift; 796da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 797da3a660dSBarry Smith x[i] = omega*(sum/d); 798da3a660dSBarry Smith } 79964119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 80078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 801da3a660dSBarry Smith its--; 802da3a660dSBarry Smith } 803d6dfbf8fSBarry Smith while (its--) { 80464119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 80578b31e54SBarry Smith CHKERRQ(ierr); 80664119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 80778b31e54SBarry Smith CHKERRQ(ierr); 80864119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 80978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 810d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 811d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 812dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 813dbb450caSBarry Smith v = A->a + A->i[i] + shift; 814d6dfbf8fSBarry Smith sum = b[i]; 815d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 816dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 817d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 818dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 819dbb450caSBarry Smith v = B->a + B->i[i] + shift; 820d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 821d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 822d6dfbf8fSBarry Smith } 82364119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 82478b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 825d6dfbf8fSBarry Smith } 826d6dfbf8fSBarry Smith } 827d6dfbf8fSBarry Smith else if (flag & SOR_BACKWARD_SWEEP){ 828da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 829da3a660dSBarry Smith VecSet(&zero,mat->lvec); 83064119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 83178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 832da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 833da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 834dbb450caSBarry Smith idx = A->j + diag[i] + !shift; 835dbb450caSBarry Smith v = A->a + diag[i] + !shift; 836da3a660dSBarry Smith sum = b[i]; 837da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 838dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 839da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 840dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 841dbb450caSBarry Smith v = B->a + B->i[i] + shift; 842da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 843da3a660dSBarry Smith x[i] = omega*(sum/d); 844da3a660dSBarry Smith } 84564119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 84678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 847da3a660dSBarry Smith its--; 848da3a660dSBarry Smith } 849d6dfbf8fSBarry Smith while (its--) { 85064119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN, 85178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 85264119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN, 85378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 85464119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 85578b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 856d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 857d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 858dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 859dbb450caSBarry Smith v = A->a + A->i[i] + shift; 860d6dfbf8fSBarry Smith sum = b[i]; 861d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 862dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 863d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 864dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 865dbb450caSBarry Smith v = B->a + B->i[i] + shift; 866d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 867d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 868d6dfbf8fSBarry Smith } 86964119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 87078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 871d6dfbf8fSBarry Smith } 872d6dfbf8fSBarry Smith } 873d6dfbf8fSBarry Smith else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 874da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 875dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 876da3a660dSBarry Smith } 87764119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 87878b31e54SBarry Smith CHKERRQ(ierr); 87964119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 88078b31e54SBarry Smith CHKERRQ(ierr); 881d6dfbf8fSBarry Smith while (its--) { 882d6dfbf8fSBarry Smith /* go down through the rows */ 883d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 884d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 885dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 886dbb450caSBarry Smith v = A->a + A->i[i] + shift; 887d6dfbf8fSBarry Smith sum = b[i]; 888d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 889dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 890d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 891dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 892dbb450caSBarry Smith v = B->a + B->i[i] + shift; 893d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 894d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 895d6dfbf8fSBarry Smith } 896d6dfbf8fSBarry Smith /* come up through the rows */ 897d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 898d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 899dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 900dbb450caSBarry Smith v = A->a + A->i[i] + shift; 901d6dfbf8fSBarry Smith sum = b[i]; 902d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 903dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 904d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 905dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 906dbb450caSBarry Smith v = B->a + B->i[i] + shift; 907d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 908d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 909d6dfbf8fSBarry Smith } 910d6dfbf8fSBarry Smith } 911d6dfbf8fSBarry Smith } 912d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 913da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 914dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 915da3a660dSBarry Smith } 91664119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 91778b31e54SBarry Smith CHKERRQ(ierr); 91864119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 91978b31e54SBarry Smith CHKERRQ(ierr); 920d6dfbf8fSBarry Smith while (its--) { 921d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 922d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 923dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 924dbb450caSBarry Smith v = A->a + A->i[i] + shift; 925d6dfbf8fSBarry Smith sum = b[i]; 926d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 927dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 928d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 929dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 930dbb450caSBarry Smith v = B->a + B->i[i] + shift; 931d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 932d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 933d6dfbf8fSBarry Smith } 934d6dfbf8fSBarry Smith } 935d6dfbf8fSBarry Smith } 936d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 937da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 938dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 939da3a660dSBarry Smith } 94064119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL, 94178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 94264119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL, 94378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 944d6dfbf8fSBarry Smith while (its--) { 945d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 946d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 947dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 948dbb450caSBarry Smith v = A->a + A->i[i] + shift; 949d6dfbf8fSBarry Smith sum = b[i]; 950d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 951dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 952d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 953dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 954dbb450caSBarry Smith v = B->a + B->i[i] + shift; 955d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 956d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 957d6dfbf8fSBarry Smith } 958d6dfbf8fSBarry Smith } 959d6dfbf8fSBarry Smith } 9608a729477SBarry Smith return 0; 9618a729477SBarry Smith } 962a66be287SLois Curfman McInnes 963fc76ce87SLois Curfman McInnes static int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,int *nz, 964fc76ce87SLois Curfman McInnes int *nzalloc,int *mem) 965a66be287SLois Curfman McInnes { 966a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 967a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 968a66be287SLois Curfman McInnes int ierr, isend[3], irecv[3], nzA, nzallocA, memA; 969a66be287SLois Curfman McInnes 97078b31e54SBarry Smith ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr); 97178b31e54SBarry Smith ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr); 972a66be287SLois Curfman McInnes isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA; 973a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 974a66be287SLois Curfman McInnes *nz = isend[0]; *nzalloc = isend[1]; *mem = isend[2]; 975a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 976d65a2f8fSBarry Smith MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_MAX,matin->comm); 977a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 978a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 979d65a2f8fSBarry Smith MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_SUM,matin->comm); 980a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 981a66be287SLois Curfman McInnes } 982a66be287SLois Curfman McInnes return 0; 983a66be287SLois Curfman McInnes } 984a66be287SLois Curfman McInnes 985299609e3SLois Curfman McInnes extern int MatLUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,Mat*); 986299609e3SLois Curfman McInnes extern int MatLUFactorNumeric_MPIAIJ(Mat,Mat*); 987299609e3SLois Curfman McInnes extern int MatLUFactor_MPIAIJ(Mat,IS,IS,double); 988299609e3SLois Curfman McInnes extern int MatILUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,int,Mat *); 989299609e3SLois Curfman McInnes extern int MatSolve_MPIAIJ(Mat,Vec,Vec); 990299609e3SLois Curfman McInnes extern int MatSolveAdd_MPIAIJ(Mat,Vec,Vec,Vec); 991299609e3SLois Curfman McInnes extern int MatSolveTrans_MPIAIJ(Mat,Vec,Vec); 992299609e3SLois Curfman McInnes extern int MatSolveTransAdd_MPIAIJ(Mat,Vec,Vec,Vec); 993299609e3SLois Curfman McInnes 994416022c9SBarry Smith static int MatSetOption_MPIAIJ(Mat A,MatOption op) 995c74985f6SBarry Smith { 996c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 997c74985f6SBarry Smith 998c0bbcb79SLois Curfman McInnes if (op == NO_NEW_NONZERO_LOCATIONS || 999c0bbcb79SLois Curfman McInnes op == YES_NEW_NONZERO_LOCATIONS || 1000c0bbcb79SLois Curfman McInnes op == COLUMNS_SORTED || 1001c0bbcb79SLois Curfman McInnes op == ROW_ORIENTED) { 1002c0bbcb79SLois Curfman McInnes MatSetOption(a->A,op); 1003c0bbcb79SLois Curfman McInnes MatSetOption(a->B,op); 1004c74985f6SBarry Smith } 1005c0bbcb79SLois Curfman McInnes else if (op == ROWS_SORTED || 1006c0bbcb79SLois Curfman McInnes op == SYMMETRIC_MATRIX || 1007c0bbcb79SLois Curfman McInnes op == STRUCTURALLY_SYMMETRIC_MATRIX || 1008c0bbcb79SLois Curfman McInnes op == YES_NEW_DIAGONALS) 1009c0bbcb79SLois Curfman McInnes PLogInfo((PetscObject)A,"Info:MatSetOption_MPIAIJ:Option ignored\n"); 1010bbb6d6a8SBarry Smith else if (op == COLUMN_ORIENTED) 10114d39ef84SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:COLUMN_ORIENTED");} 1012c0bbcb79SLois Curfman McInnes else if (op == NO_NEW_DIAGONALS) 10134d39ef84SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:NO_NEW_DIAGONALS");} 1014c0bbcb79SLois Curfman McInnes else 10154d39ef84SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:unknown option");} 1016c74985f6SBarry Smith return 0; 1017c74985f6SBarry Smith } 1018c74985f6SBarry Smith 1019d1710a03SLois Curfman McInnes static int MatGetSize_MPIAIJ(Mat matin,int *m,int *n) 1020c74985f6SBarry Smith { 102144a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1022c74985f6SBarry Smith *m = mat->M; *n = mat->N; 1023c74985f6SBarry Smith return 0; 1024c74985f6SBarry Smith } 1025c74985f6SBarry Smith 1026d1710a03SLois Curfman McInnes static int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n) 1027c74985f6SBarry Smith { 102844a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1029b7c46309SBarry Smith *m = mat->m; *n = mat->N; 1030c74985f6SBarry Smith return 0; 1031c74985f6SBarry Smith } 1032c74985f6SBarry Smith 1033d1710a03SLois Curfman McInnes static int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n) 1034c74985f6SBarry Smith { 103544a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1036c74985f6SBarry Smith *m = mat->rstart; *n = mat->rend; 1037c74985f6SBarry Smith return 0; 1038c74985f6SBarry Smith } 1039c74985f6SBarry Smith 104039e00950SLois Curfman McInnes static int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 104139e00950SLois Curfman McInnes { 1042154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1043154123eaSLois Curfman McInnes Scalar *vworkA, *vworkB, **pvA, **pvB; 1044154123eaSLois Curfman McInnes int i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart; 1045154123eaSLois Curfman McInnes int nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend; 104639e00950SLois Curfman McInnes 1047416022c9SBarry Smith if (row < rstart || row >= rend) SETERRQ(1,"MatGetRow_MPIAIJ:only local rows") 1048abc0e9e4SLois Curfman McInnes lrow = row - rstart; 104939e00950SLois Curfman McInnes 1050154123eaSLois Curfman McInnes pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1051154123eaSLois Curfman McInnes if (!v) {pvA = 0; pvB = 0;} 1052154123eaSLois Curfman McInnes if (!idx) {pcA = 0; if (!v) pcB = 0;} 105378b31e54SBarry Smith ierr = MatGetRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 105478b31e54SBarry Smith ierr = MatGetRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 1055154123eaSLois Curfman McInnes nztot = nzA + nzB; 1056154123eaSLois Curfman McInnes 1057154123eaSLois Curfman McInnes if (v || idx) { 1058154123eaSLois Curfman McInnes if (nztot) { 1059154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1060299609e3SLois Curfman McInnes int imark; 106148b35521SBarry Smith if (mat->assembled) { 1062154123eaSLois Curfman McInnes for (i=0; i<nzB; i++) cworkB[i] = mat->garray[cworkB[i]]; 106348b35521SBarry Smith } 1064154123eaSLois Curfman McInnes if (v) { 10650452661fSBarry Smith *v = (Scalar *) PetscMalloc( (nztot)*sizeof(Scalar) ); CHKPTRQ(*v); 106639e00950SLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 1067154123eaSLois Curfman McInnes if (cworkB[i] < cstart) (*v)[i] = vworkB[i]; 1068154123eaSLois Curfman McInnes else break; 1069154123eaSLois Curfman McInnes } 1070154123eaSLois Curfman McInnes imark = i; 1071154123eaSLois Curfman McInnes for ( i=0; i<nzA; i++ ) (*v)[imark+i] = vworkA[i]; 1072299609e3SLois Curfman McInnes for ( i=imark; i<nzB; i++ ) (*v)[nzA+i] = vworkB[i]; 1073154123eaSLois Curfman McInnes } 1074154123eaSLois Curfman McInnes if (idx) { 10750452661fSBarry Smith *idx = (int *) PetscMalloc( (nztot)*sizeof(int) ); CHKPTRQ(*idx); 1076154123eaSLois Curfman McInnes for (i=0; i<nzA; i++) cworkA[i] += cstart; 1077154123eaSLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 1078154123eaSLois Curfman McInnes if (cworkB[i] < cstart) (*idx)[i] = cworkB[i]; 1079154123eaSLois Curfman McInnes else break; 1080154123eaSLois Curfman McInnes } 1081154123eaSLois Curfman McInnes imark = i; 1082154123eaSLois Curfman McInnes for ( i=0; i<nzA; i++ ) (*idx)[imark+i] = cworkA[i]; 1083299609e3SLois Curfman McInnes for ( i=imark; i<nzB; i++ ) (*idx)[nzA+i] = cworkB[i]; 108439e00950SLois Curfman McInnes } 108539e00950SLois Curfman McInnes } 108639e00950SLois Curfman McInnes else {*idx = 0; *v=0;} 1087154123eaSLois Curfman McInnes } 108839e00950SLois Curfman McInnes *nz = nztot; 108978b31e54SBarry Smith ierr = MatRestoreRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 109078b31e54SBarry Smith ierr = MatRestoreRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 109139e00950SLois Curfman McInnes return 0; 109239e00950SLois Curfman McInnes } 109339e00950SLois Curfman McInnes 109439e00950SLois Curfman McInnes static int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 109539e00950SLois Curfman McInnes { 10960452661fSBarry Smith if (idx) PetscFree(*idx); 10970452661fSBarry Smith if (v) PetscFree(*v); 109839e00950SLois Curfman McInnes return 0; 109939e00950SLois Curfman McInnes } 110039e00950SLois Curfman McInnes 1101cddf8d76SBarry Smith static int MatNorm_MPIAIJ(Mat mat,NormType type,double *norm) 1102855ac2c5SLois Curfman McInnes { 1103855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1104ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data; 1105416022c9SBarry Smith int ierr, i, j, cstart = aij->cstart,shift = amat->indexshift; 1106416022c9SBarry Smith double sum = 0.0; 110704ca555eSLois Curfman McInnes Scalar *v; 110804ca555eSLois Curfman McInnes 1109416022c9SBarry Smith if (!aij->assembled) SETERRQ(1,"MatNorm_MPIAIJ:Must assemble matrix"); 111017699dbbSLois Curfman McInnes if (aij->size == 1) { 111114183eadSLois Curfman McInnes ierr = MatNorm(aij->A,type,norm); CHKERRQ(ierr); 111237fa93a5SLois Curfman McInnes } else { 111304ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 111404ca555eSLois Curfman McInnes v = amat->a; 111504ca555eSLois Curfman McInnes for (i=0; i<amat->nz; i++ ) { 111604ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 111704ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 111804ca555eSLois Curfman McInnes #else 111904ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 112004ca555eSLois Curfman McInnes #endif 112104ca555eSLois Curfman McInnes } 112204ca555eSLois Curfman McInnes v = bmat->a; 112304ca555eSLois Curfman McInnes for (i=0; i<bmat->nz; i++ ) { 112404ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 112504ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 112604ca555eSLois Curfman McInnes #else 112704ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 112804ca555eSLois Curfman McInnes #endif 112904ca555eSLois Curfman McInnes } 113004ca555eSLois Curfman McInnes MPI_Allreduce((void*)&sum,(void*)norm,1,MPI_DOUBLE,MPI_SUM,mat->comm); 113104ca555eSLois Curfman McInnes *norm = sqrt(*norm); 113204ca555eSLois Curfman McInnes } 113304ca555eSLois Curfman McInnes else if (type == NORM_1) { /* max column norm */ 113404ca555eSLois Curfman McInnes double *tmp, *tmp2; 113504ca555eSLois Curfman McInnes int *jj, *garray = aij->garray; 11360452661fSBarry Smith tmp = (double *) PetscMalloc( aij->N*sizeof(double) ); CHKPTRQ(tmp); 11370452661fSBarry Smith tmp2 = (double *) PetscMalloc( aij->N*sizeof(double) ); CHKPTRQ(tmp2); 1138cddf8d76SBarry Smith PetscMemzero(tmp,aij->N*sizeof(double)); 113904ca555eSLois Curfman McInnes *norm = 0.0; 114004ca555eSLois Curfman McInnes v = amat->a; jj = amat->j; 114104ca555eSLois Curfman McInnes for ( j=0; j<amat->nz; j++ ) { 1142579c6b6fSBarry Smith tmp[cstart + *jj++ + shift] += PetscAbsScalar(*v); v++; 114304ca555eSLois Curfman McInnes } 114404ca555eSLois Curfman McInnes v = bmat->a; jj = bmat->j; 114504ca555eSLois Curfman McInnes for ( j=0; j<bmat->nz; j++ ) { 1146579c6b6fSBarry Smith tmp[garray[*jj++ + shift]] += PetscAbsScalar(*v); v++; 114704ca555eSLois Curfman McInnes } 114804ca555eSLois Curfman McInnes MPI_Allreduce((void*)tmp,(void*)tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm); 114904ca555eSLois Curfman McInnes for ( j=0; j<aij->N; j++ ) { 115004ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 115104ca555eSLois Curfman McInnes } 11520452661fSBarry Smith PetscFree(tmp); PetscFree(tmp2); 115304ca555eSLois Curfman McInnes } 115404ca555eSLois Curfman McInnes else if (type == NORM_INFINITY) { /* max row norm */ 1155515d9167SLois Curfman McInnes double ntemp = 0.0; 115604ca555eSLois Curfman McInnes for ( j=0; j<amat->m; j++ ) { 1157dbb450caSBarry Smith v = amat->a + amat->i[j] + shift; 115804ca555eSLois Curfman McInnes sum = 0.0; 115904ca555eSLois Curfman McInnes for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) { 1160cddf8d76SBarry Smith sum += PetscAbsScalar(*v); v++; 116104ca555eSLois Curfman McInnes } 1162dbb450caSBarry Smith v = bmat->a + bmat->i[j] + shift; 116304ca555eSLois Curfman McInnes for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) { 1164cddf8d76SBarry Smith sum += PetscAbsScalar(*v); v++; 116504ca555eSLois Curfman McInnes } 1166515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 116704ca555eSLois Curfman McInnes } 1168515d9167SLois Curfman McInnes MPI_Allreduce((void*)&ntemp,(void*)norm,1,MPI_DOUBLE,MPI_MAX,mat->comm); 116904ca555eSLois Curfman McInnes } 117004ca555eSLois Curfman McInnes else { 1171515d9167SLois Curfman McInnes SETERRQ(1,"MatNorm_MPIAIJ:No support for two norm"); 117204ca555eSLois Curfman McInnes } 117337fa93a5SLois Curfman McInnes } 1174855ac2c5SLois Curfman McInnes return 0; 1175855ac2c5SLois Curfman McInnes } 1176855ac2c5SLois Curfman McInnes 11770de55854SLois Curfman McInnes static int MatTranspose_MPIAIJ(Mat A,Mat *matout) 1178b7c46309SBarry Smith { 1179b7c46309SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1180dbb450caSBarry Smith Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data; 1181416022c9SBarry Smith int ierr,shift = Aloc->indexshift; 1182416022c9SBarry Smith Mat B; 1183b7c46309SBarry Smith int M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct; 1184b7c46309SBarry Smith Scalar *array; 1185b7c46309SBarry Smith 1186416022c9SBarry Smith if (!matout && M != N) SETERRQ(1,"MatTranspose_MPIAIJ:Square only in-place"); 1187b7c46309SBarry Smith ierr = MatCreateMPIAIJ(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,0,0,0,0,&B); 1188b7c46309SBarry Smith CHKERRQ(ierr); 1189b7c46309SBarry Smith 1190b7c46309SBarry Smith /* copy over the A part */ 1191ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->A->data; 1192b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1193b7c46309SBarry Smith row = a->rstart; 1194dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;} 1195b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1196416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1197b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 1198b7c46309SBarry Smith } 1199b7c46309SBarry Smith aj = Aloc->j; 1200dbb450caSBarry Smith for ( i=0; i<ai[m]|+shift; i++ ) {aj[i] -= a->cstart + shift;} 1201b7c46309SBarry Smith 1202b7c46309SBarry Smith /* copy over the B part */ 1203ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->B->data; 1204b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1205b7c46309SBarry Smith row = a->rstart; 12060452661fSBarry Smith ct = cols = (int *) PetscMalloc( (1+ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols); 1207dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];} 1208b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1209416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1210b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 1211b7c46309SBarry Smith } 12120452661fSBarry Smith PetscFree(ct); 1213b7c46309SBarry Smith ierr = MatAssemblyBegin(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 1214b7c46309SBarry Smith ierr = MatAssemblyEnd(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 12150de55854SLois Curfman McInnes if (matout) { 12160de55854SLois Curfman McInnes *matout = B; 12170de55854SLois Curfman McInnes } else { 12180de55854SLois Curfman McInnes /* This isn't really an in-place transpose .... but free data structures from a */ 12190452661fSBarry Smith PetscFree(a->rowners); 12200de55854SLois Curfman McInnes ierr = MatDestroy(a->A); CHKERRQ(ierr); 12210de55854SLois Curfman McInnes ierr = MatDestroy(a->B); CHKERRQ(ierr); 12220452661fSBarry Smith if (a->colmap) PetscFree(a->colmap); 12230452661fSBarry Smith if (a->garray) PetscFree(a->garray); 12240de55854SLois Curfman McInnes if (a->lvec) VecDestroy(a->lvec); 1225a56f8943SBarry Smith if (a->Mvctx) VecScatterDestroy(a->Mvctx); 12260452661fSBarry Smith PetscFree(a); 1227416022c9SBarry Smith PetscMemcpy(A,B,sizeof(struct _Mat)); 12280452661fSBarry Smith PetscHeaderDestroy(B); 12290de55854SLois Curfman McInnes } 1230b7c46309SBarry Smith return 0; 1231b7c46309SBarry Smith } 1232b7c46309SBarry Smith 1233fc76ce87SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MatType,Mat *); 1234a56f8943SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat,Mat *,int); 1235d6dfbf8fSBarry Smith 12368a729477SBarry Smith /* -------------------------------------------------------------------*/ 12372ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ, 123839e00950SLois Curfman McInnes MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ, 123944a69424SLois Curfman McInnes MatMult_MPIAIJ,MatMultAdd_MPIAIJ, 124044a69424SLois Curfman McInnes MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ, 1241299609e3SLois Curfman McInnes MatSolve_MPIAIJ,MatSolveAdd_MPIAIJ, 1242299609e3SLois Curfman McInnes MatSolveTrans_MPIAIJ,MatSolveTransAdd_MPIAIJ, 1243299609e3SLois Curfman McInnes MatLUFactor_MPIAIJ,0, 124444a69424SLois Curfman McInnes MatRelax_MPIAIJ, 1245b7c46309SBarry Smith MatTranspose_MPIAIJ, 1246a66be287SLois Curfman McInnes MatGetInfo_MPIAIJ,0, 1247855ac2c5SLois Curfman McInnes MatGetDiagonal_MPIAIJ,0,MatNorm_MPIAIJ, 1248ee50ffe9SBarry Smith MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ, 12491eb62cbbSBarry Smith 0, 1250299609e3SLois Curfman McInnes MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ, 1251299609e3SLois Curfman McInnes MatGetReordering_MPIAIJ, 1252299609e3SLois Curfman McInnes MatLUFactorSymbolic_MPIAIJ,MatLUFactorNumeric_MPIAIJ,0,0, 1253d1710a03SLois Curfman McInnes MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ, 1254299609e3SLois Curfman McInnes MatILUFactorSymbolic_MPIAIJ,0, 1255ff7509f2SBarry Smith 0,0,MatConvert_MPIAIJ,0,0,MatCopyPrivate_MPIAIJ}; 12568a729477SBarry Smith 12571987afe7SBarry Smith /*@C 1258ff756334SLois Curfman McInnes MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format 1259ff756334SLois Curfman McInnes (the default parallel PETSc format). 12608a729477SBarry Smith 12618a729477SBarry Smith Input Parameters: 12621eb62cbbSBarry Smith . comm - MPI communicator 12637d3e4905SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 12647d3e4905SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated 12657d3e4905SLois Curfman McInnes if N is given) 12667d3e4905SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 12677d3e4905SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated 12687d3e4905SLois Curfman McInnes if n is given) 1269ab693e5aSLois Curfman McInnes . d_nz - number of nonzeros per row in diagonal portion of local submatrix 1270ff756334SLois Curfman McInnes (same for all local rows) 1271ab693e5aSLois Curfman McInnes . d_nzz - number of nonzeros per row in diagonal portion of local submatrix 1272ab693e5aSLois Curfman McInnes or null (possibly different for each row). You must leave room 1273ab693e5aSLois Curfman McInnes for the diagonal entry even if it is zero. 1274ab693e5aSLois Curfman McInnes . o_nz - number of nonzeros per row in off-diagonal portion of local 1275ab693e5aSLois Curfman McInnes submatrix (same for all local rows). 1276ab693e5aSLois Curfman McInnes . o_nzz - number of nonzeros per row in off-diagonal portion of local 1277ab693e5aSLois Curfman McInnes submatrix or null (possibly different for each row). 12788a729477SBarry Smith 1279ff756334SLois Curfman McInnes Output Parameter: 12808a729477SBarry Smith . newmat - the matrix 12818a729477SBarry Smith 1282ff756334SLois Curfman McInnes Notes: 1283ff756334SLois Curfman McInnes The AIJ format (also called the Yale sparse matrix format or 1284ff756334SLois Curfman McInnes compressed row storage), is fully compatible with standard Fortran 77 12850002213bSLois Curfman McInnes storage. That is, the stored row and column indices can begin at 12860002213bSLois Curfman McInnes either one (as in Fortran) or zero. See the users manual for details. 1287ff756334SLois Curfman McInnes 1288ff756334SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 1289ff756334SLois Curfman McInnes (possibly both). 1290ff756334SLois Curfman McInnes 1291e0245417SLois Curfman McInnes Storage Information: 1292e0245417SLois Curfman McInnes For a square global matrix we define each processor's diagonal portion 1293e0245417SLois Curfman McInnes to be its local rows and the corresponding columns (a square submatrix); 1294e0245417SLois Curfman McInnes each processor's off-diagonal portion encompasses the remainder of the 1295e0245417SLois Curfman McInnes local matrix (a rectangular submatrix). 1296e0245417SLois Curfman McInnes 1297e0245417SLois Curfman McInnes The user can specify preallocated storage for the diagonal part of 1298e0245417SLois Curfman McInnes the local submatrix with either d_nz or d_nnz (not both). Set both 1299e0245417SLois Curfman McInnes d_nz and d_nnz to zero for PETSc to control dynamic memory allocation. 1300e0245417SLois Curfman McInnes Likewise, specify preallocated storage for the off-diagonal part of 1301e0245417SLois Curfman McInnes the local submatrix with o_nz or o_nnz (not both). 1302ff756334SLois Curfman McInnes 1303dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel 1304ff756334SLois Curfman McInnes 1305fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues() 13068a729477SBarry Smith @*/ 13071eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N, 13081eb62cbbSBarry Smith int d_nz,int *d_nnz, int o_nz,int *o_nnz,Mat *newmat) 13098a729477SBarry Smith { 13108a729477SBarry Smith Mat mat; 1311416022c9SBarry Smith Mat_MPIAIJ *a; 13126abc6512SBarry Smith int ierr, i,sum[2],work[2]; 1313416022c9SBarry Smith 13148a729477SBarry Smith *newmat = 0; 13150452661fSBarry Smith PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm); 1316a5a9c739SBarry Smith PLogObjectCreate(mat); 13170452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a); 1318416022c9SBarry Smith PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 131944a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 132044a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 13218a729477SBarry Smith mat->factor = 0; 1322d6dfbf8fSBarry Smith 132364119d58SLois Curfman McInnes a->insertmode = NOT_SET_VALUES; 132417699dbbSLois Curfman McInnes MPI_Comm_rank(comm,&a->rank); 132517699dbbSLois Curfman McInnes MPI_Comm_size(comm,&a->size); 13261eb62cbbSBarry Smith 13271987afe7SBarry Smith if (m == PETSC_DECIDE && (d_nnz || o_nnz)) 13281987afe7SBarry Smith SETERRQ(1,"MatCreateMPIAIJ:Cannot have PETSc decide rows but set d_nnz or o_nnz"); 13291987afe7SBarry Smith 1330dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 13311eb62cbbSBarry Smith work[0] = m; work[1] = n; 1332d65a2f8fSBarry Smith MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm ); 1333dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE) M = sum[0]; 1334dbd7a890SLois Curfman McInnes if (N == PETSC_DECIDE) N = sum[1]; 13351eb62cbbSBarry Smith } 133617699dbbSLois Curfman McInnes if (m == PETSC_DECIDE) {m = M/a->size + ((M % a->size) > a->rank);} 133717699dbbSLois Curfman McInnes if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);} 1338416022c9SBarry Smith a->m = m; 1339416022c9SBarry Smith a->n = n; 1340416022c9SBarry Smith a->N = N; 1341416022c9SBarry Smith a->M = M; 13421eb62cbbSBarry Smith 13431eb62cbbSBarry Smith /* build local table of row and column ownerships */ 13440452661fSBarry Smith a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 1345579c6b6fSBarry Smith PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ)); 134617699dbbSLois Curfman McInnes a->cowners = a->rowners + a->size + 1; 1347416022c9SBarry Smith MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm); 1348416022c9SBarry Smith a->rowners[0] = 0; 134917699dbbSLois Curfman McInnes for ( i=2; i<=a->size; i++ ) { 1350416022c9SBarry Smith a->rowners[i] += a->rowners[i-1]; 13518a729477SBarry Smith } 135217699dbbSLois Curfman McInnes a->rstart = a->rowners[a->rank]; 135317699dbbSLois Curfman McInnes a->rend = a->rowners[a->rank+1]; 1354416022c9SBarry Smith MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm); 1355416022c9SBarry Smith a->cowners[0] = 0; 135617699dbbSLois Curfman McInnes for ( i=2; i<=a->size; i++ ) { 1357416022c9SBarry Smith a->cowners[i] += a->cowners[i-1]; 13588a729477SBarry Smith } 135917699dbbSLois Curfman McInnes a->cstart = a->cowners[a->rank]; 136017699dbbSLois Curfman McInnes a->cend = a->cowners[a->rank+1]; 13618a729477SBarry Smith 1362416022c9SBarry Smith ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,n,d_nz,d_nnz,&a->A); CHKERRQ(ierr); 1363416022c9SBarry Smith PLogObjectParent(mat,a->A); 1364416022c9SBarry Smith ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,N,o_nz,o_nnz,&a->B); CHKERRQ(ierr); 1365416022c9SBarry Smith PLogObjectParent(mat,a->B); 13668a729477SBarry Smith 13671eb62cbbSBarry Smith /* build cache for off array entries formed */ 1368416022c9SBarry Smith ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr); 1369416022c9SBarry Smith a->colmap = 0; 1370416022c9SBarry Smith a->garray = 0; 13718a729477SBarry Smith 13721eb62cbbSBarry Smith /* stuff used for matrix vector multiply */ 1373416022c9SBarry Smith a->lvec = 0; 1374416022c9SBarry Smith a->Mvctx = 0; 1375416022c9SBarry Smith a->assembled = 0; 13768a729477SBarry Smith 1377d6dfbf8fSBarry Smith *newmat = mat; 1378d6dfbf8fSBarry Smith return 0; 1379d6dfbf8fSBarry Smith } 1380c74985f6SBarry Smith 1381a56f8943SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat matin,Mat *newmat,int cpvalues) 1382d6dfbf8fSBarry Smith { 1383d6dfbf8fSBarry Smith Mat mat; 1384416022c9SBarry Smith Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data; 13852ee70a88SLois Curfman McInnes int ierr, len; 1386d6dfbf8fSBarry Smith 1387416022c9SBarry Smith if (!oldmat->assembled) SETERRQ(1,"MatCopyPrivate_MPIAIJ:Must assemble matrix"); 1388416022c9SBarry Smith *newmat = 0; 13890452661fSBarry Smith PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm); 1390a5a9c739SBarry Smith PLogObjectCreate(mat); 13910452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a); 1392416022c9SBarry Smith PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 139344a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 139444a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 1395d6dfbf8fSBarry Smith mat->factor = matin->factor; 1396d6dfbf8fSBarry Smith 1397416022c9SBarry Smith a->m = oldmat->m; 1398416022c9SBarry Smith a->n = oldmat->n; 1399416022c9SBarry Smith a->M = oldmat->M; 1400416022c9SBarry Smith a->N = oldmat->N; 1401d6dfbf8fSBarry Smith 1402416022c9SBarry Smith a->assembled = 1; 1403416022c9SBarry Smith a->rstart = oldmat->rstart; 1404416022c9SBarry Smith a->rend = oldmat->rend; 1405416022c9SBarry Smith a->cstart = oldmat->cstart; 1406416022c9SBarry Smith a->cend = oldmat->cend; 140717699dbbSLois Curfman McInnes a->size = oldmat->size; 140817699dbbSLois Curfman McInnes a->rank = oldmat->rank; 140964119d58SLois Curfman McInnes a->insertmode = NOT_SET_VALUES; 1410d6dfbf8fSBarry Smith 14110452661fSBarry Smith a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners); 141217699dbbSLois Curfman McInnes PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ)); 141317699dbbSLois Curfman McInnes PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int)); 1414416022c9SBarry Smith ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 14152ee70a88SLois Curfman McInnes if (oldmat->colmap) { 14160452661fSBarry Smith a->colmap = (int *) PetscMalloc((a->N)*sizeof(int));CHKPTRQ(a->colmap); 1417416022c9SBarry Smith PLogObjectMemory(mat,(a->N)*sizeof(int)); 1418416022c9SBarry Smith PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int)); 1419416022c9SBarry Smith } else a->colmap = 0; 1420ec8511deSBarry Smith if (oldmat->garray && (len = ((Mat_SeqAIJ *) (oldmat->B->data))->n)) { 14210452661fSBarry Smith a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray); 1422464493b3SBarry Smith PLogObjectMemory(mat,len*sizeof(int)); 1423416022c9SBarry Smith PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 1424416022c9SBarry Smith } else a->garray = 0; 1425d6dfbf8fSBarry Smith 1426416022c9SBarry Smith ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 1427416022c9SBarry Smith PLogObjectParent(mat,a->lvec); 1428a56f8943SBarry Smith ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 1429416022c9SBarry Smith PLogObjectParent(mat,a->Mvctx); 1430416022c9SBarry Smith ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 1431416022c9SBarry Smith PLogObjectParent(mat,a->A); 1432416022c9SBarry Smith ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 1433416022c9SBarry Smith PLogObjectParent(mat,a->B); 14348a729477SBarry Smith *newmat = mat; 14358a729477SBarry Smith return 0; 14368a729477SBarry Smith } 1437416022c9SBarry Smith 1438416022c9SBarry Smith #include "sysio.h" 1439416022c9SBarry Smith 144002834360SBarry Smith int MatLoad_MPIAIJorMPIRow(Viewer bview,MatType type,Mat *newmat) 1441416022c9SBarry Smith { 1442d65a2f8fSBarry Smith Mat A; 1443416022c9SBarry Smith int i, nz, ierr, j,rstart, rend, fd; 1444d65a2f8fSBarry Smith Scalar *vals,*svals; 1445416022c9SBarry Smith PetscObject vobj = (PetscObject) bview; 1446416022c9SBarry Smith MPI_Comm comm = vobj->comm; 1447416022c9SBarry Smith MPI_Status status; 144817699dbbSLois Curfman McInnes int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 1449d65a2f8fSBarry Smith int *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols; 1450d65a2f8fSBarry Smith int tag = ((PetscObject)bview)->tag; 1451416022c9SBarry Smith 145217699dbbSLois Curfman McInnes MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 145317699dbbSLois Curfman McInnes if (!rank) { 1454416022c9SBarry Smith ierr = ViewerFileGetDescriptor_Private(bview,&fd); CHKERRQ(ierr); 1455416022c9SBarry Smith ierr = SYRead(fd,(char *)header,4,SYINT); CHKERRQ(ierr); 145602834360SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:not matrix object"); 1457416022c9SBarry Smith } 1458416022c9SBarry Smith 1459416022c9SBarry Smith MPI_Bcast(header+1,3,MPI_INT,0,comm); 1460416022c9SBarry Smith M = header[1]; N = header[2]; 1461416022c9SBarry Smith /* determine ownership of all rows */ 146217699dbbSLois Curfman McInnes m = M/size + ((M % size) > rank); 14630452661fSBarry Smith rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners); 1464416022c9SBarry Smith MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm); 1465416022c9SBarry Smith rowners[0] = 0; 146617699dbbSLois Curfman McInnes for ( i=2; i<=size; i++ ) { 1467416022c9SBarry Smith rowners[i] += rowners[i-1]; 1468416022c9SBarry Smith } 146917699dbbSLois Curfman McInnes rstart = rowners[rank]; 147017699dbbSLois Curfman McInnes rend = rowners[rank+1]; 1471416022c9SBarry Smith 1472416022c9SBarry Smith /* distribute row lengths to all processors */ 14730452661fSBarry Smith ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens); 1474416022c9SBarry Smith offlens = ourlens + (rend-rstart); 147517699dbbSLois Curfman McInnes if (!rank) { 14760452661fSBarry Smith rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths); 1477416022c9SBarry Smith ierr = SYRead(fd,rowlengths,M,SYINT); CHKERRQ(ierr); 14780452661fSBarry Smith sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 147917699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i]; 1480d65a2f8fSBarry Smith MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm); 14810452661fSBarry Smith PetscFree(sndcounts); 1482416022c9SBarry Smith } 1483416022c9SBarry Smith else { 1484416022c9SBarry Smith MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm); 1485416022c9SBarry Smith } 1486416022c9SBarry Smith 148717699dbbSLois Curfman McInnes if (!rank) { 1488416022c9SBarry Smith /* calculate the number of nonzeros on each processor */ 14890452661fSBarry Smith procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 1490cddf8d76SBarry Smith PetscMemzero(procsnz,size*sizeof(int)); 149117699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 1492416022c9SBarry Smith for ( j=rowners[i]; j< rowners[i+1]; j++ ) { 1493416022c9SBarry Smith procsnz[i] += rowlengths[j]; 1494416022c9SBarry Smith } 1495416022c9SBarry Smith } 14960452661fSBarry Smith PetscFree(rowlengths); 1497416022c9SBarry Smith 1498416022c9SBarry Smith /* determine max buffer needed and allocate it */ 1499416022c9SBarry Smith maxnz = 0; 150017699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 15010452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 1502416022c9SBarry Smith } 15030452661fSBarry Smith cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 1504416022c9SBarry Smith 1505416022c9SBarry Smith /* read in my part of the matrix column indices */ 1506416022c9SBarry Smith nz = procsnz[0]; 15070452661fSBarry Smith mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 1508d65a2f8fSBarry Smith ierr = SYRead(fd,mycols,nz,SYINT); CHKERRQ(ierr); 1509d65a2f8fSBarry Smith 1510d65a2f8fSBarry Smith /* read in every one elses and ship off */ 151117699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { 1512d65a2f8fSBarry Smith nz = procsnz[i]; 1513416022c9SBarry Smith ierr = SYRead(fd,cols,nz,SYINT); CHKERRQ(ierr); 1514d65a2f8fSBarry Smith MPI_Send(cols,nz,MPI_INT,i,tag,comm); 1515d65a2f8fSBarry Smith } 15160452661fSBarry Smith PetscFree(cols); 1517416022c9SBarry Smith } 1518416022c9SBarry Smith else { 1519416022c9SBarry Smith /* determine buffer space needed for message */ 1520416022c9SBarry Smith nz = 0; 1521416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1522416022c9SBarry Smith nz += ourlens[i]; 1523416022c9SBarry Smith } 15240452661fSBarry Smith mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 1525416022c9SBarry Smith 1526416022c9SBarry Smith /* receive message of column indices*/ 1527d65a2f8fSBarry Smith MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status); 1528416022c9SBarry Smith MPI_Get_count(&status,MPI_INT,&maxnz); 152902834360SBarry Smith if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file"); 1530416022c9SBarry Smith } 1531416022c9SBarry Smith 1532416022c9SBarry Smith /* loop over local rows, determining number of off diagonal entries */ 1533cddf8d76SBarry Smith PetscMemzero(offlens,m*sizeof(int)); 1534416022c9SBarry Smith jj = 0; 1535416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1536416022c9SBarry Smith for ( j=0; j<ourlens[i]; j++ ) { 1537d65a2f8fSBarry Smith if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 1538416022c9SBarry Smith jj++; 1539416022c9SBarry Smith } 1540416022c9SBarry Smith } 1541d65a2f8fSBarry Smith 1542d65a2f8fSBarry Smith /* create our matrix */ 1543416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1544416022c9SBarry Smith ourlens[i] -= offlens[i]; 1545416022c9SBarry Smith } 1546d65a2f8fSBarry Smith if (type == MATMPIAIJ) { 1547d65a2f8fSBarry Smith ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1548d65a2f8fSBarry Smith } 1549d65a2f8fSBarry Smith else if (type == MATMPIROW) { 1550d65a2f8fSBarry Smith ierr = MatCreateMPIRow(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1551d65a2f8fSBarry Smith } 1552d65a2f8fSBarry Smith A = *newmat; 1553d65a2f8fSBarry Smith MatSetOption(A,COLUMNS_SORTED); 1554d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1555d65a2f8fSBarry Smith ourlens[i] += offlens[i]; 1556d65a2f8fSBarry Smith } 1557416022c9SBarry Smith 155817699dbbSLois Curfman McInnes if (!rank) { 15590452661fSBarry Smith vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals); 1560416022c9SBarry Smith 1561416022c9SBarry Smith /* read in my part of the matrix numerical values */ 1562416022c9SBarry Smith nz = procsnz[0]; 1563416022c9SBarry Smith ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr); 1564d65a2f8fSBarry Smith 1565d65a2f8fSBarry Smith /* insert into matrix */ 1566d65a2f8fSBarry Smith jj = rstart; 1567d65a2f8fSBarry Smith smycols = mycols; 1568d65a2f8fSBarry Smith svals = vals; 1569d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1570d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1571d65a2f8fSBarry Smith smycols += ourlens[i]; 1572d65a2f8fSBarry Smith svals += ourlens[i]; 1573d65a2f8fSBarry Smith jj++; 1574416022c9SBarry Smith } 1575416022c9SBarry Smith 1576d65a2f8fSBarry Smith /* read in other processors and ship out */ 157717699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { 1578416022c9SBarry Smith nz = procsnz[i]; 1579416022c9SBarry Smith ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr); 1580d65a2f8fSBarry Smith MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm); 1581416022c9SBarry Smith } 15820452661fSBarry Smith PetscFree(procsnz); 1583416022c9SBarry Smith } 1584d65a2f8fSBarry Smith else { 1585d65a2f8fSBarry Smith /* receive numeric values */ 15860452661fSBarry Smith vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals); 1587416022c9SBarry Smith 1588d65a2f8fSBarry Smith /* receive message of values*/ 1589d65a2f8fSBarry Smith MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status); 1590d65a2f8fSBarry Smith MPI_Get_count(&status,MPIU_SCALAR,&maxnz); 159102834360SBarry Smith if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file"); 1592d65a2f8fSBarry Smith 1593d65a2f8fSBarry Smith /* insert into matrix */ 1594d65a2f8fSBarry Smith jj = rstart; 1595d65a2f8fSBarry Smith smycols = mycols; 1596d65a2f8fSBarry Smith svals = vals; 1597d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1598d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1599d65a2f8fSBarry Smith smycols += ourlens[i]; 1600d65a2f8fSBarry Smith svals += ourlens[i]; 1601d65a2f8fSBarry Smith jj++; 1602d65a2f8fSBarry Smith } 1603d65a2f8fSBarry Smith } 16040452661fSBarry Smith PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners); 1605d65a2f8fSBarry Smith 1606d65a2f8fSBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 1607d65a2f8fSBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 1608416022c9SBarry Smith return 0; 1609416022c9SBarry Smith } 1610