xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision d8a51d2aac522cef49bfbd84fd4cf473dc3fa6ee)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
1026cec326SBarry Smith {
1126cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1226cec326SBarry Smith 
1326cec326SBarry Smith   PetscFunctionBegin;
1426cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1526cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1626cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
1726cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
1826cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2026cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2126cec326SBarry Smith #else
2226cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
2326cec326SBarry Smith #endif
2426cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
2526cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
2626cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
2726cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
2826cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
2926cec326SBarry Smith 
3026cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3126cec326SBarry Smith 
3226cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
3326cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
3426cec326SBarry Smith 
3526cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
4126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
4326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
4726cec326SBarry Smith #endif
4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
4926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
5026cec326SBarry Smith #endif
5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
5226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
5326cec326SBarry Smith #endif
5426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
5726cec326SBarry Smith #endif
5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
6026cec326SBarry Smith #endif
6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
6226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
6326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
6426cec326SBarry Smith #endif
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
6926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
7326cec326SBarry Smith #endif
7426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
7626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
7726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
7926cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
8026cec326SBarry Smith }
8126cec326SBarry Smith 
8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
8326cec326SBarry Smith #define TYPE AIJ
8426cec326SBarry Smith #define TYPE_AIJ
8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
8626cec326SBarry Smith #undef TYPE
8726cec326SBarry Smith #undef TYPE_AIJ
8826cec326SBarry Smith 
89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
90d71ae5a4SJacob Faibussowitsch {
918a9c020eSBarry Smith   Mat B;
928a9c020eSBarry Smith 
938a9c020eSBarry Smith   PetscFunctionBegin;
948a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
958a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
968a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
97501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
998a9c020eSBarry Smith }
1008a9c020eSBarry Smith 
101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
102d71ae5a4SJacob Faibussowitsch {
1038a9c020eSBarry Smith   Mat B;
1048a9c020eSBarry Smith 
1058a9c020eSBarry Smith   PetscFunctionBegin;
1068a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1078a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
108501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1108a9c020eSBarry Smith }
1118a9c020eSBarry Smith 
11201bebe75SBarry Smith /*MC
11301bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
11401bebe75SBarry Smith 
11511a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
11611a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
11711a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
11801bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
11901bebe75SBarry Smith   the above preallocation routines for simplicity.
12001bebe75SBarry Smith 
12127430b45SBarry Smith    Options Database Key:
12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
12301bebe75SBarry Smith 
12411a5261eSBarry Smith   Developer Note:
1252ef1f0ffSBarry Smith   Level: beginner
1262ef1f0ffSBarry Smith 
12711a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
12801bebe75SBarry Smith    enough exist.
12901bebe75SBarry Smith 
1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
13101bebe75SBarry Smith M*/
13201bebe75SBarry Smith 
13301bebe75SBarry Smith /*MC
13401bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
13501bebe75SBarry Smith 
13611a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
13711a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
13811a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
13901bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14001bebe75SBarry Smith   the above preallocation routines for simplicity.
14101bebe75SBarry Smith 
14227430b45SBarry Smith    Options Database Key:
14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
14401bebe75SBarry Smith 
14501bebe75SBarry Smith   Level: beginner
14601bebe75SBarry Smith 
1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
14801bebe75SBarry Smith M*/
14901bebe75SBarry Smith 
150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
151d71ae5a4SJacob Faibussowitsch {
152f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
153f74ef234SStefano Zampini 
154f74ef234SStefano Zampini   PetscFunctionBegin;
155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
156b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
157f74ef234SStefano Zampini #endif
1581baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1591baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1603120d049SRichard Tran Mills 
1613120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1623120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1633120d049SRichard Tran Mills    * to differ from the parent matrix. */
1641baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1651baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1663120d049SRichard Tran Mills 
1673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
168f74ef234SStefano Zampini }
169f74ef234SStefano Zampini 
170ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
171d71ae5a4SJacob Faibussowitsch {
17226bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
17326bda2c4Sstefano_zampini 
17426bda2c4Sstefano_zampini   PetscFunctionBegin;
17546533700Sstefano_zampini   if (mat->A) {
1769566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1779566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
17846533700Sstefano_zampini   }
1793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18026bda2c4Sstefano_zampini }
18126bda2c4Sstefano_zampini 
182ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
183d71ae5a4SJacob Faibussowitsch {
18427d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
18527d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
18627d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
18727d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
188ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
18927d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
19027d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
19127d4218bSShri Abhyankar 
19227d4218bSShri Abhyankar   PetscFunctionBegin;
193f4259b30SLisandro Dalcin   *keptrows = NULL;
194ce496241SStefano Zampini 
19527d4218bSShri Abhyankar   ia = a->i;
19627d4218bSShri Abhyankar   ib = b->i;
1979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
1989566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
19927d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
20027d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
20127d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
20227d4218bSShri Abhyankar     if (!na && !nb) {
20327d4218bSShri Abhyankar       cnt++;
20427d4218bSShri Abhyankar       goto ok1;
20527d4218bSShri Abhyankar     }
206ce496241SStefano Zampini     aa = aav + ia[i];
20727d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
20827d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
20927d4218bSShri Abhyankar     }
2108e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
21127d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
21227d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
21327d4218bSShri Abhyankar     }
21427d4218bSShri Abhyankar     cnt++;
21527d4218bSShri Abhyankar   ok1:;
21627d4218bSShri Abhyankar   }
2171c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
218ce496241SStefano Zampini   if (!n0rows) {
2199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2213ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
222ce496241SStefano Zampini   }
2239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
22427d4218bSShri Abhyankar   cnt = 0;
22527d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22627d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22727d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22827d4218bSShri Abhyankar     if (!na && !nb) continue;
229ce496241SStefano Zampini     aa = aav + ia[i];
23027d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
23127d4218bSShri Abhyankar       if (aa[j] != 0.0) {
23227d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23327d4218bSShri Abhyankar         goto ok2;
23427d4218bSShri Abhyankar       }
23527d4218bSShri Abhyankar     }
2368e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23727d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23827d4218bSShri Abhyankar       if (bb[j] != 0.0) {
23927d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
24027d4218bSShri Abhyankar         goto ok2;
24127d4218bSShri Abhyankar       }
24227d4218bSShri Abhyankar     }
24327d4218bSShri Abhyankar   ok2:;
24427d4218bSShri Abhyankar   }
2459566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2469566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2479566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24927d4218bSShri Abhyankar }
25027d4218bSShri Abhyankar 
251ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
252d71ae5a4SJacob Faibussowitsch {
25399e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
25494342113SStefano Zampini   PetscBool   cong;
25599e65526SBarry Smith 
25699e65526SBarry Smith   PetscFunctionBegin;
2579566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
25894342113SStefano Zampini   if (Y->assembled && cong) {
2599566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
26099e65526SBarry Smith   } else {
2619566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
26299e65526SBarry Smith   }
2633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26499e65526SBarry Smith }
26599e65526SBarry Smith 
266ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
267d71ae5a4SJacob Faibussowitsch {
268f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
269f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
270f1f41ecbSJed Brown 
271f1f41ecbSJed Brown   PetscFunctionBegin;
2720298fd71SBarry Smith   *zrows = NULL;
2739566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2749566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
275f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2769566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
278f1f41ecbSJed Brown }
279f1f41ecbSJed Brown 
280ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
281d71ae5a4SJacob Faibussowitsch {
2820716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
283a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
2840716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
2850716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
2860716a85fSBarry Smith   PetscReal         *work;
287ce496241SStefano Zampini   const PetscScalar *dummy;
2880716a85fSBarry Smith 
2890716a85fSBarry Smith   PetscFunctionBegin;
2909566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
2919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
2929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
2939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
2949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
2959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
296857cbf51SRichard Tran Mills   if (type == NORM_2) {
297ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
298ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
299857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
300ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
301ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
302857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
303ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
304ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
305857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
306ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
307ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
308857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
309ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
310ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
311857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
312857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
3131c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3140716a85fSBarry Smith   } else {
3151c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3160716a85fSBarry Smith   }
3179566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
318857cbf51SRichard Tran Mills   if (type == NORM_2) {
319a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
320857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
321a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3220716a85fSBarry Smith   }
3233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3240716a85fSBarry Smith }
3250716a85fSBarry Smith 
326ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
327d71ae5a4SJacob Faibussowitsch {
328e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
329e52d2c62SBarry Smith   IS              sis, gis;
330e52d2c62SBarry Smith   const PetscInt *isis, *igis;
331e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
332e52d2c62SBarry Smith 
333e52d2c62SBarry Smith   PetscFunctionBegin;
3349566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3359566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3369566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3379566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3389566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3399566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
340e52d2c62SBarry Smith 
3419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3429566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3439566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
344e52d2c62SBarry Smith   n = ngis + nsis;
3459566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3469566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
347e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3489566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
349e52d2c62SBarry Smith 
3509566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3519566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3529566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3539566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
355e52d2c62SBarry Smith }
356e52d2c62SBarry Smith 
357dd6ea824SBarry Smith /*
3580f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3599e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3600f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3610f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
36272fa4726SStefano Zampini has an order N integer array but is fast to access.
3639e25ed09SBarry Smith */
364d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
365d71ae5a4SJacob Faibussowitsch {
36644a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
367d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
368dbb450caSBarry Smith 
3693a40ed3dSBarry Smith   PetscFunctionBegin;
37008401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
371aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
372eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
373c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
374b1fc9764SSatish Balay #else
3759566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
376905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
377b1fc9764SSatish Balay #endif
3783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3799e25ed09SBarry Smith }
3809e25ed09SBarry Smith 
381d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
382a8f51744SPierre Jolivet   do { \
383db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
384db4deed7SKarl Rupp     else high1 = nrow1; \
385fd3458f5SBarry Smith     lastcol1 = col; \
386fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
387fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
388fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
389fd3458f5SBarry Smith       else low1 = t; \
390ba4e3ef2SSatish Balay     } \
391fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
392fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
393fd3458f5SBarry Smith       if (rp1[_i] == col) { \
3940c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
3950c0d7e18SFande Kong           ap1[_i] += value; \
3960c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
3970c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
3989371c9d4SSatish Balay         } else ap1[_i] = value; \
39930770e4dSSatish Balay         goto a_noinsert; \
4000520107fSSatish Balay       } \
4010520107fSSatish Balay     } \
4029371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4039371c9d4SSatish Balay       low1  = 0; \
4049371c9d4SSatish Balay       high1 = nrow1; \
4059371c9d4SSatish Balay       goto a_noinsert; \
4069371c9d4SSatish Balay     } \
4079371c9d4SSatish Balay     if (nonew == 1) { \
4089371c9d4SSatish Balay       low1  = 0; \
4099371c9d4SSatish Balay       high1 = nrow1; \
4109371c9d4SSatish Balay       goto a_noinsert; \
4119371c9d4SSatish Balay     } \
41208401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
413fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4149371c9d4SSatish Balay     N = nrow1++ - 1; \
4159371c9d4SSatish Balay     a->nz++; \
4169371c9d4SSatish Balay     high1++; \
4170520107fSSatish Balay     /* shift up all the later entries in this row */ \
4189566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4199566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
420fd3458f5SBarry Smith     rp1[_i] = col; \
421fd3458f5SBarry Smith     ap1[_i] = value; \
422e56f5c9eSBarry Smith     A->nonzerostate++; \
42330770e4dSSatish Balay   a_noinsert:; \
424fd3458f5SBarry Smith     ailen[row] = nrow1; \
425a8f51744SPierre Jolivet   } while (0)
4260a198c4cSBarry Smith 
427d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
428a8f51744SPierre Jolivet   do { \
429db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
430db4deed7SKarl Rupp     else high2 = nrow2; \
431fd3458f5SBarry Smith     lastcol2 = col; \
432fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
433fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
434fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
435fd3458f5SBarry Smith       else low2 = t; \
436ba4e3ef2SSatish Balay     } \
437fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
438fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
439fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4400c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4410c0d7e18SFande Kong           ap2[_i] += value; \
4420c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4439371c9d4SSatish Balay         } else ap2[_i] = value; \
44430770e4dSSatish Balay         goto b_noinsert; \
44530770e4dSSatish Balay       } \
44630770e4dSSatish Balay     } \
4479371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4489371c9d4SSatish Balay       low2  = 0; \
4499371c9d4SSatish Balay       high2 = nrow2; \
4509371c9d4SSatish Balay       goto b_noinsert; \
4519371c9d4SSatish Balay     } \
4529371c9d4SSatish Balay     if (nonew == 1) { \
4539371c9d4SSatish Balay       low2  = 0; \
4549371c9d4SSatish Balay       high2 = nrow2; \
4559371c9d4SSatish Balay       goto b_noinsert; \
4569371c9d4SSatish Balay     } \
45708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
458fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4599371c9d4SSatish Balay     N = nrow2++ - 1; \
4609371c9d4SSatish Balay     b->nz++; \
4619371c9d4SSatish Balay     high2++; \
46230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4639566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4649566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
465fd3458f5SBarry Smith     rp2[_i] = col; \
466fd3458f5SBarry Smith     ap2[_i] = value; \
467e56f5c9eSBarry Smith     B->nonzerostate++; \
46830770e4dSSatish Balay   b_noinsert:; \
469fd3458f5SBarry Smith     bilen[row] = nrow2; \
470a8f51744SPierre Jolivet   } while (0)
47130770e4dSSatish Balay 
472ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
473d71ae5a4SJacob Faibussowitsch {
4742fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4752fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4762fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
477fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4782fd7e33dSBarry Smith 
4792fd7e33dSBarry Smith   PetscFunctionBegin;
4802fd7e33dSBarry Smith   /* code only works for square matrices A */
4812fd7e33dSBarry Smith 
4822fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
4839566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
4842fd7e33dSBarry Smith   row = row - diag;
4852fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
4862fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
4872fd7e33dSBarry Smith   }
488fff043a9SJunchao Zhang   if (l) {
4899566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
4909566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
4919566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
492fff043a9SJunchao Zhang   }
4932fd7e33dSBarry Smith 
4942fd7e33dSBarry Smith   /* diagonal part */
495fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
4969566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
4979566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row])));
4989566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
499fff043a9SJunchao Zhang   }
5002fd7e33dSBarry Smith 
5012fd7e33dSBarry Smith   /* right of diagonal part */
502fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5039566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5049566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5059566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
506fff043a9SJunchao Zhang   }
5073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5082fd7e33dSBarry Smith }
5092fd7e33dSBarry Smith 
510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
511d71ae5a4SJacob Faibussowitsch {
51244a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
513071fcb05SBarry Smith   PetscScalar value = 0.0;
514d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
515d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
516ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5178a729477SBarry Smith 
5180520107fSSatish Balay   /* Some Variables required in the macro */
5194ee7247eSSatish Balay   Mat         A     = aij->A;
5204ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
52157809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
522ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
52330770e4dSSatish Balay   Mat         B                 = aij->B;
52430770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
525d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
526ce496241SStefano Zampini   MatScalar  *aa, *ba;
527fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5288d76821aSHong Zhang   PetscInt    nonew;
529a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5304ee7247eSSatish Balay 
5313a40ed3dSBarry Smith   PetscFunctionBegin;
5329566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5348a729477SBarry Smith   for (i = 0; i < m; i++) {
5355ef9f2a5SBarry Smith     if (im[i] < 0) continue;
53608401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5374b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5384b0e389bSBarry Smith       row      = im[i] - rstart;
539fd3458f5SBarry Smith       lastcol1 = -1;
5408e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5418e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
542fd3458f5SBarry Smith       rmax1    = aimax[row];
543fd3458f5SBarry Smith       nrow1    = ailen[row];
544fd3458f5SBarry Smith       low1     = 0;
545fd3458f5SBarry Smith       high1    = nrow1;
546fd3458f5SBarry Smith       lastcol2 = -1;
5478e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5488e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
549fd3458f5SBarry Smith       rmax2    = bimax[row];
550d498b1e9SBarry Smith       nrow2    = bilen[row];
551fd3458f5SBarry Smith       low2     = 0;
552fd3458f5SBarry Smith       high2    = nrow2;
553fd3458f5SBarry Smith 
5541eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
555071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
556c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
557fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
558fd3458f5SBarry Smith           col   = in[j] - cstart;
5598d76821aSHong Zhang           nonew = a->nonew;
560d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
561f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
562f7d195e4SLawrence Mitchell           continue;
563f7d195e4SLawrence Mitchell         } else {
564f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
565227d817aSBarry Smith           if (mat->was_assembled) {
56648a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
567aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
568eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
569fa46199cSSatish Balay             col--;
570b1fc9764SSatish Balay #else
571905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
572b1fc9764SSatish Balay #endif
573fff043a9SJunchao Zhang             if (col < 0 && !((Mat_SeqAIJ *)(aij->B->data))->nonew) { /* col < 0 means in[j] is a new col for B */
5749566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIAIJ(mat));                 /* Change aij->B from reduced/local format to expanded/global format */
5754b0e389bSBarry Smith               col = in[j];
5769bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
577f9508a3cSSatish Balay               B     = aij->B;
578f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5799371c9d4SSatish Balay               bimax = b->imax;
5809371c9d4SSatish Balay               bi    = b->i;
5819371c9d4SSatish Balay               bilen = b->ilen;
5829371c9d4SSatish Balay               bj    = b->j;
5839371c9d4SSatish Balay               ba    = b->a;
584d498b1e9SBarry Smith               rp2   = bj + bi[row];
585d498b1e9SBarry Smith               ap2   = ba + bi[row];
586d498b1e9SBarry Smith               rmax2 = bimax[row];
587d498b1e9SBarry Smith               nrow2 = bilen[row];
588d498b1e9SBarry Smith               low2  = 0;
589d498b1e9SBarry Smith               high2 = nrow2;
590d0f46423SBarry Smith               bm    = aij->B->rmap->n;
591f9508a3cSSatish Balay               ba    = b->a;
592d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
5930587a0fcSBarry Smith               if (1 == ((Mat_SeqAIJ *)(aij->B->data))->nonew) {
5949566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
59598921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
5960587a0fcSBarry Smith             }
597c48de900SBarry Smith           } else col = in[j];
5988d76821aSHong Zhang           nonew = b->nonew;
599d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
6001eb62cbbSBarry Smith         }
6011eb62cbbSBarry Smith       }
6025ef9f2a5SBarry Smith     } else {
60328b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
60490f02eecSBarry Smith       if (!aij->donotstash) {
6055080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
606d36fbae8SSatish Balay         if (roworiented) {
6078e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
608d36fbae8SSatish Balay         } else {
6098e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6104b0e389bSBarry Smith         }
6111eb62cbbSBarry Smith       }
6128a729477SBarry Smith     }
61390f02eecSBarry Smith   }
6145519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6178a729477SBarry Smith }
6188a729477SBarry Smith 
6192b08fdbeSandi selinger /*
620904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6212b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
622904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6232b08fdbeSandi selinger */
624d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
625d71ae5a4SJacob Faibussowitsch {
626904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
627904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6284cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
629904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
630904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
631904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
632904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
633904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6346dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
635904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
636904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
637904d1e70Sandi selinger 
638904d1e70Sandi selinger   PetscFunctionBegin;
639904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
640904d1e70Sandi selinger   for (j = 0; j < am; j++) {
641904d1e70Sandi selinger     dnz = onz = 0;
642904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6436dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
644904d1e70Sandi selinger       /* If column is in the diagonal */
645904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
646904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
647904d1e70Sandi selinger         dnz++;
648904d1e70Sandi selinger       } else { /* off-diagonal entries */
649904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
650904d1e70Sandi selinger         onz++;
651904d1e70Sandi selinger       }
652904d1e70Sandi selinger     }
653904d1e70Sandi selinger     ailen[j] = dnz;
654904d1e70Sandi selinger     bilen[j] = onz;
655904d1e70Sandi selinger   }
6563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
657904d1e70Sandi selinger }
658904d1e70Sandi selinger 
659904d1e70Sandi selinger /*
660904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
661904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6621de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6631de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6641de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
665904d1e70Sandi selinger */
666d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
667d71ae5a4SJacob Faibussowitsch {
6683a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6693a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6704cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
671e9ede7d0Sandi selinger   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)(aij->A)->data, *aijo = (Mat_SeqAIJ *)(aij->B)->data;
6723a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6733a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6743a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6753a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6763a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6776dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6781de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
679904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
680904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
6813a063d27Sandi selinger 
6823a063d27Sandi selinger   PetscFunctionBegin;
6833a063d27Sandi selinger   /* Iterate over all rows of the matrix */
6843a063d27Sandi selinger   for (j = 0; j < am; j++) {
685904d1e70Sandi selinger     dnz_row = onz_row = 0;
686904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
687904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
688e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
689e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
690ae8e66a0Sandi selinger       /* If column is in the diagonal */
6913a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
692904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
693904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
694904d1e70Sandi selinger         dnz_row++;
695ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
696904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
697904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
698904d1e70Sandi selinger         onz_row++;
6993a063d27Sandi selinger       }
7003a063d27Sandi selinger     }
701904d1e70Sandi selinger     ailen[j] = dnz_row;
702904d1e70Sandi selinger     bilen[j] = onz_row;
7033a063d27Sandi selinger   }
7043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7053a063d27Sandi selinger }
7063a063d27Sandi selinger 
707ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
708d71ae5a4SJacob Faibussowitsch {
709b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
710d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
711d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
712b49de8d1SLois Curfman McInnes 
7133a40ed3dSBarry Smith   PetscFunctionBegin;
714b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
71554c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
71654c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
71785835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
718b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
719b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
72054c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
72154c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
722b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
723b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7249566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
725fa852ad4SSatish Balay       } else {
72648a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
727aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
728eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
729fa46199cSSatish Balay         col--;
730b1fc9764SSatish Balay #else
731905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
732b1fc9764SSatish Balay #endif
733e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
73448a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
735b49de8d1SLois Curfman McInnes       }
736b49de8d1SLois Curfman McInnes     }
737b49de8d1SLois Curfman McInnes   }
7383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
739b49de8d1SLois Curfman McInnes }
740bc5ccf88SSatish Balay 
741ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
742d71ae5a4SJacob Faibussowitsch {
743bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
744b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
745bc5ccf88SSatish Balay 
746bc5ccf88SSatish Balay   PetscFunctionBegin;
7473ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
748bc5ccf88SSatish Balay 
7499566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7509566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7519566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
753bc5ccf88SSatish Balay }
754bc5ccf88SSatish Balay 
755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
756d71ae5a4SJacob Faibussowitsch {
757bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
758b1d57f15SBarry Smith   PetscMPIInt  n;
759b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
760e44c0bd4SBarry Smith   PetscInt    *row, *col;
761ace3abfcSBarry Smith   PetscBool    other_disassembled;
76287828ca2SBarry Smith   PetscScalar *val;
763bc5ccf88SSatish Balay 
76491c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7656e111a19SKarl Rupp 
766bc5ccf88SSatish Balay   PetscFunctionBegin;
7674cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
768a2d1c673SSatish Balay     while (1) {
7699566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
770a2d1c673SSatish Balay       if (!flg) break;
771a2d1c673SSatish Balay 
772bc5ccf88SSatish Balay       for (i = 0; i < n;) {
773bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7742205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7752205254eSKarl Rupp           if (row[j] != rstart) break;
7762205254eSKarl Rupp         }
777bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
778bc5ccf88SSatish Balay         else ncols = n - i;
779bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7809566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
781bc5ccf88SSatish Balay         i = j;
782bc5ccf88SSatish Balay       }
783bc5ccf88SSatish Balay     }
7849566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
785bc5ccf88SSatish Balay   }
7868c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
787c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
7889ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
7899ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
7909566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
7919566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
7929ecce9b1SRichard Tran Mills   }
793e2cf4d64SStefano Zampini #endif
7949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
7959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
796bc5ccf88SSatish Balay 
797bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
798071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
799bc5ccf88SSatish Balay   /*
800bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
801bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
802bc5ccf88SSatish Balay   */
803bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
8045f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
80535cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
8069566063dSJacob Faibussowitsch       PetscCall(MatDisAssemble_MPIAIJ(mat));
807ad59fb31SSatish Balay     }
808ad59fb31SSatish Balay   }
80948a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8109566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8118c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
812c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
813e2cf4d64SStefano Zampini #endif
8149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
816bc5ccf88SSatish Balay 
8179566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8182205254eSKarl Rupp 
819f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
820a30b2313SHong Zhang 
8219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
822e56f5c9eSBarry Smith 
8234f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8244f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)(aij->A->data))->nonew) {
825e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
8261c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
827e56f5c9eSBarry Smith   }
8288c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
829c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
830e2cf4d64SStefano Zampini #endif
8313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
832bc5ccf88SSatish Balay }
833bc5ccf88SSatish Balay 
834ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
835d71ae5a4SJacob Faibussowitsch {
83644a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8373a40ed3dSBarry Smith 
8383a40ed3dSBarry Smith   PetscFunctionBegin;
8399566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8409566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8421eb62cbbSBarry Smith }
8431eb62cbbSBarry Smith 
844ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
845d71ae5a4SJacob Faibussowitsch {
8461b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8471b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8486e520ac8SStefano Zampini   PetscInt    r, len;
8499939a2d1SBarry Smith   PetscBool   cong;
8501eb62cbbSBarry Smith 
8513a40ed3dSBarry Smith   PetscFunctionBegin;
8526e520ac8SStefano Zampini   /* get locally owned rows */
8539566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8549566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
85597b48c8fSBarry Smith   /* fix right hand side if needed */
85697b48c8fSBarry Smith   if (x && b) {
8571b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8581b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8591b1dd7adSMatthew G. Knepley 
86028b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8619566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8629566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8631b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8649566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8659566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
86697b48c8fSBarry Smith   }
867a92ad425SStefano Zampini 
868a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8699566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8709566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
871a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
872a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
873a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
874a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
875a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
876a92ad425SStefano Zampini 
877a92ad425SStefano Zampini     nnwA = aijA->nonew;
878a92ad425SStefano Zampini     nnwB = aijB->nonew;
879a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
880a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
881a92ad425SStefano Zampini     if (!nnzA) {
8829566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
883a92ad425SStefano Zampini       aijA->nonew = 0;
884a92ad425SStefano Zampini     }
885a92ad425SStefano Zampini     if (!nnzB) {
8869566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
887a92ad425SStefano Zampini       aijB->nonew = 0;
888a92ad425SStefano Zampini     }
889a92ad425SStefano Zampini     /* Must zero here before the next loop */
8909566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
8919566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
8921b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
8931b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
894a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
8959566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
896e2d53e46SBarry Smith     }
897a92ad425SStefano Zampini     aijA->nonew = nnwA;
898a92ad425SStefano Zampini     aijB->nonew = nnwB;
8996eb55b6aSBarry Smith   } else {
9009566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9019566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9026eb55b6aSBarry Smith   }
9039566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9059566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9064f9cfa9eSBarry Smith 
9079939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
9089939a2d1SBarry Smith   if (!((Mat_SeqAIJ *)(mat->A->data))->keepnonzeropattern || !((Mat_SeqAIJ *)(mat->A->data))->nonew) {
9099939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
9109939a2d1SBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9119939a2d1SBarry Smith   }
9123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9131eb62cbbSBarry Smith }
9141eb62cbbSBarry Smith 
915ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
916d71ae5a4SJacob Faibussowitsch {
9179c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9185ba17502SJed Brown   PetscMPIInt        n = A->rmap->n;
919131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
92054bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
921131c27b5Sprj-   PetscMPIInt        p = 0;
92254bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
92354bd4135SMatthew G. Knepley   PetscSF            sf;
9249c7c4993SBarry Smith   const PetscScalar *xx;
925fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
926564f14d6SBarry Smith   Vec                xmask, lmask;
927564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
928564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
929564f14d6SBarry Smith   PetscScalar       *aa;
9309c7c4993SBarry Smith 
9319c7c4993SBarry Smith   PetscFunctionBegin;
93254bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
93454bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
93654bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
93754bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
938aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9395ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9409566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9415ba17502SJed Brown     }
94254bd4135SMatthew G. Knepley     rrows[r].rank  = p;
94354bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9449c7c4993SBarry Smith   }
9459566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9469566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
94754bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9489566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9499566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9509566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
95154bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9529371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9539371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
954564f14d6SBarry Smith   /* zero diagonal part of matrix */
9559566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9564cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9579566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9589566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9599566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
96054bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9619566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9629566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9639566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9649566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
965a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
966a92ad425SStefano Zampini     PetscBool cong;
967a92ad425SStefano Zampini 
9689566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
96928b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9709566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9719566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9729566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9739566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
974377aa5a1SBarry Smith   }
9759566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9764cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9779566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
978564f14d6SBarry Smith   ii = aij->i;
9798e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
980564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
981564f14d6SBarry Smith   if (aij->compressedrow.use) {
982564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
983564f14d6SBarry Smith     ii   = aij->compressedrow.i;
984564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
985564f14d6SBarry Smith     for (i = 0; i < m; i++) {
986564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
987564f14d6SBarry Smith       aj = aij->j + ii[i];
988fff043a9SJunchao Zhang       aa = aij_a + ii[i];
989564f14d6SBarry Smith 
990564f14d6SBarry Smith       for (j = 0; j < n; j++) {
99125266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
992377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
993564f14d6SBarry Smith           *aa = 0.0;
994564f14d6SBarry Smith         }
995564f14d6SBarry Smith         aa++;
996564f14d6SBarry Smith         aj++;
997564f14d6SBarry Smith       }
998564f14d6SBarry Smith       ridx++;
999564f14d6SBarry Smith     }
1000564f14d6SBarry Smith   } else { /* do not use compressed row format */
1001564f14d6SBarry Smith     m = l->B->rmap->n;
1002564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1003564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1004564f14d6SBarry Smith       aj = aij->j + ii[i];
1005fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1006564f14d6SBarry Smith       for (j = 0; j < n; j++) {
100725266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1008377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1009564f14d6SBarry Smith           *aa = 0.0;
1010564f14d6SBarry Smith         }
1011564f14d6SBarry Smith         aa++;
1012564f14d6SBarry Smith         aj++;
1013564f14d6SBarry Smith       }
1014564f14d6SBarry Smith     }
1015564f14d6SBarry Smith   }
1016a92ad425SStefano Zampini   if (x && b) {
10179566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10189566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1019377aa5a1SBarry Smith   }
10209566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10219566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10229566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10239566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10244f9cfa9eSBarry Smith 
10254f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
10269939a2d1SBarry Smith   if (!((Mat_SeqAIJ *)(l->A->data))->nonew) {
10274f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
10281c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10294f9cfa9eSBarry Smith   }
10303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10319c7c4993SBarry Smith }
10329c7c4993SBarry Smith 
1033ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1034d71ae5a4SJacob Faibussowitsch {
1035416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1036b1d57f15SBarry Smith   PetscInt    nt;
103719b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1038416022c9SBarry Smith 
10393a40ed3dSBarry Smith   PetscFunctionBegin;
10409566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
104108401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10429566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1043296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10449566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1045296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10471eb62cbbSBarry Smith }
10481eb62cbbSBarry Smith 
1049ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1050d71ae5a4SJacob Faibussowitsch {
1051bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1052bd0c2dcbSBarry Smith 
1053bd0c2dcbSBarry Smith   PetscFunctionBegin;
10549566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1056bd0c2dcbSBarry Smith }
1057bd0c2dcbSBarry Smith 
1058ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1059d71ae5a4SJacob Faibussowitsch {
1060416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
106101ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10623a40ed3dSBarry Smith 
10633a40ed3dSBarry Smith   PetscFunctionBegin;
10649566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10659566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10669566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10679566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1069da3a660dSBarry Smith }
1070da3a660dSBarry Smith 
1071ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1072d71ae5a4SJacob Faibussowitsch {
1073416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1074da3a660dSBarry Smith 
10753a40ed3dSBarry Smith   PetscFunctionBegin;
1076da3a660dSBarry Smith   /* do nondiagonal part */
10779566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1078da3a660dSBarry Smith   /* do local part */
10799566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10809613dc34SJunchao Zhang   /* add partial results together */
10819566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10829566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1084da3a660dSBarry Smith }
1085da3a660dSBarry Smith 
1086ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1087d71ae5a4SJacob Faibussowitsch {
10884f423910Svictorle   MPI_Comm    comm;
1089ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1090ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1091cd0d46ebSvictorle   IS          Me, Notme;
1092b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
109354d735aeSStefano Zampini   PetscBool   lf;
1094b1d57f15SBarry Smith   PetscMPIInt size;
1095cd0d46ebSvictorle 
1096cd0d46ebSvictorle   PetscFunctionBegin;
109742e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
10989566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
10991c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
11003ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11019566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11029566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11033ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
110442e5f5b4Svictorle 
11057dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11069566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11079566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1109cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1110cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11119566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11129566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11139566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
111466501d38Svictorle   Aoff = Aoffs[0];
11159566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
111666501d38Svictorle   Boff = Boffs[0];
11179566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11189566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11199566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11209566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11219566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11229566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1124cd0d46ebSvictorle }
1125cd0d46ebSvictorle 
1126ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsSymmetric_MPIAIJ(Mat A, PetscReal tol, PetscBool *f)
1127d71ae5a4SJacob Faibussowitsch {
1128a3bbdb47SHong Zhang   PetscFunctionBegin;
11299566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose_MPIAIJ(A, A, tol, f));
11303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1131a3bbdb47SHong Zhang }
1132a3bbdb47SHong Zhang 
1133ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1134d71ae5a4SJacob Faibussowitsch {
1135416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1136da3a660dSBarry Smith 
11373a40ed3dSBarry Smith   PetscFunctionBegin;
1138da3a660dSBarry Smith   /* do nondiagonal part */
11399566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1140da3a660dSBarry Smith   /* do local part */
11419566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11429613dc34SJunchao Zhang   /* add partial results together */
11439566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11449566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1146da3a660dSBarry Smith }
1147da3a660dSBarry Smith 
11481eb62cbbSBarry Smith /*
11491eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11501eb62cbbSBarry Smith    diagonal block
11511eb62cbbSBarry Smith */
1152ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1153d71ae5a4SJacob Faibussowitsch {
1154416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11553a40ed3dSBarry Smith 
11563a40ed3dSBarry Smith   PetscFunctionBegin;
115708401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1158aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11599566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11611eb62cbbSBarry Smith }
11621eb62cbbSBarry Smith 
1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1164d71ae5a4SJacob Faibussowitsch {
1165052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11663a40ed3dSBarry Smith 
11673a40ed3dSBarry Smith   PetscFunctionBegin;
11689566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11699566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1171052efed2SBarry Smith }
1172052efed2SBarry Smith 
1173ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1174d71ae5a4SJacob Faibussowitsch {
11758e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11768e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11778e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11783ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11792e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
118017a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
118117a3732bSBarry Smith   PetscInt64         nz, hnz;
11823ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11833ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11843ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
118517a3732bSBarry Smith   PetscMPIInt        rank;
11868e2fed03SBarry Smith 
11878e2fed03SBarry Smith   PetscFunctionBegin;
11889566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
11893ea6fe3dSLisandro Dalcin 
11903ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
11913ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
11923ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
11933ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
11943ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
11958e2fed03SBarry Smith   nz = A->nz + B->nz;
11963ea6fe3dSLisandro Dalcin 
11973ea6fe3dSLisandro Dalcin   /* write matrix header */
11980700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
11999371c9d4SSatish Balay   header[1] = M;
12009371c9d4SSatish Balay   header[2] = N;
120117a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
120217a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
120338b83642SBarry Smith   if (rank == 0) {
120438b83642SBarry Smith     if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT;
120538b83642SBarry Smith     else header[3] = (PetscInt)hnz;
120638b83642SBarry Smith   }
12079566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12088e2fed03SBarry Smith 
12093ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12113ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12129566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12139566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12148e2fed03SBarry Smith 
12153ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12173ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12183ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12193ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12203ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12218e2fed03SBarry Smith     }
12229371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12239371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12248e2fed03SBarry Smith   }
122517a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12269566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12279566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12288e2fed03SBarry Smith 
12293ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12319566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12333ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12343ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12353ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12362e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12378e2fed03SBarry Smith     }
12389371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12399371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12408e2fed03SBarry Smith   }
12419566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
124317a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12449566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12459566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12468e2fed03SBarry Smith 
12473ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12489566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12508e2fed03SBarry Smith }
12518e2fed03SBarry Smith 
12529804daf3SBarry Smith #include <petscdraw.h>
1253ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1254d71ae5a4SJacob Faibussowitsch {
125544a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
125632dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1257ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1258b0a32e0cSBarry Smith   PetscViewer       sviewer;
1259f3ef73ceSBarry Smith   PetscViewerFormat format;
1260416022c9SBarry Smith 
12613a40ed3dSBarry Smith   PetscFunctionBegin;
12629566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12639566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12649566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
126532077d6dSBarry Smith   if (iascii) {
12669566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1267ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
1268ef5fdb51SBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)(aij->A->data))->nz + ((Mat_SeqAIJ *)(aij->B->data))->nz;
12699566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12709566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1271ef5fdb51SBarry Smith       for (i = 0; i < (PetscInt)size; i++) {
1272ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1273ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1274ef5fdb51SBarry Smith         navg += nz[i];
1275ef5fdb51SBarry Smith       }
12769566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1277ef5fdb51SBarry Smith       navg = navg / size;
12789566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12793ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1280ef5fdb51SBarry Smith     }
12819566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1282456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12834e220ebcSLois Curfman McInnes       MatInfo   info;
12846335e310SSatish Balay       PetscInt *inodes = NULL;
1285923f20ffSKris Buschelman 
12869566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12879566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12889566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12899566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1290923f20ffSKris Buschelman       if (!inodes) {
12919371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12929371c9d4SSatish Balay                                                      (double)info.memory));
12936831982aSBarry Smith       } else {
12949371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12959371c9d4SSatish Balay                                                      (double)info.memory));
12966831982aSBarry Smith       }
12979566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
12989566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
12999566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
13009566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13019566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
13029566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
13039566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
13049566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
13053ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1306fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1307923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13089566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1309923f20ffSKris Buschelman       if (inodes) {
13109566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1311d38fa0fbSBarry Smith       } else {
13129566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1313d38fa0fbSBarry Smith       }
13143ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13154aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13163ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
131708480c60SBarry Smith     }
13188e2fed03SBarry Smith   } else if (isbinary) {
13198e2fed03SBarry Smith     if (size == 1) {
13209566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13219566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13228e2fed03SBarry Smith     } else {
13239566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13248e2fed03SBarry Smith     }
13253ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
132671e56450SStefano Zampini   } else if (iascii && size == 1) {
13279566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13289566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13293ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13300f5bd95cSBarry Smith   } else if (isdraw) {
1331b0a32e0cSBarry Smith     PetscDraw draw;
1332ace3abfcSBarry Smith     PetscBool isnull;
13339566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13349566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13353ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
133619bcc07fSBarry Smith   }
133719bcc07fSBarry Smith 
133871e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
133971e56450SStefano Zampini     Mat A = NULL, Av;
134071e56450SStefano Zampini     IS  isrow, iscol;
13412ee70a88SLois Curfman McInnes 
13429566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13439566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13449566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13459566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
134671e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
134771e56450SStefano Zampini     /*
134871e56450SStefano Zampini     Mat *AA, A = NULL, Av;
134971e56450SStefano Zampini     IS  isrow,iscol;
135071e56450SStefano Zampini 
13519566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13529566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13539566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1354dd400576SPatrick Sanan     if (rank == 0) {
13559566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
135671e56450SStefano Zampini        A    = AA[0];
135771e56450SStefano Zampini        Av   = AA[0];
135895373324SBarry Smith     }
13599566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
136071e56450SStefano Zampini */
13619566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13629566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
136355843e3eSBarry Smith     /*
136455843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1365b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
136655843e3eSBarry Smith     */
13679566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1368dd400576SPatrick Sanan     if (rank == 0) {
136948a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13709566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
137195373324SBarry Smith     }
13729566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13739566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
137495373324SBarry Smith   }
13753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13761eb62cbbSBarry Smith }
13771eb62cbbSBarry Smith 
1378d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1379d71ae5a4SJacob Faibussowitsch {
1380ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1381416022c9SBarry Smith 
13823a40ed3dSBarry Smith   PetscFunctionBegin;
13839566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13849566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13859566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13869566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
138748a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1389416022c9SBarry Smith }
1390416022c9SBarry Smith 
1391ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1392d71ae5a4SJacob Faibussowitsch {
139344a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1394f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1395ace3abfcSBarry Smith   PetscBool   hasop;
13968a729477SBarry Smith 
13973a40ed3dSBarry Smith   PetscFunctionBegin;
1398a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
13999566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14003ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1401a2b30743SBarry Smith   }
1402a2b30743SBarry Smith 
140348a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
14044e980039SJed Brown 
1405c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1406da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14079566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14082798e883SHong Zhang       its--;
1409da3a660dSBarry Smith     }
14102798e883SHong Zhang 
14112798e883SHong Zhang     while (its--) {
14129566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14139566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14142798e883SHong Zhang 
1415c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14169566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14179566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14182798e883SHong Zhang 
1419c14dc6b6SHong Zhang       /* local sweep */
14209566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14212798e883SHong Zhang     }
14223a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1423da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14249566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14252798e883SHong Zhang       its--;
1426da3a660dSBarry Smith     }
14272798e883SHong Zhang     while (its--) {
14289566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14299566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14302798e883SHong Zhang 
1431c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14329566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14339566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1434c14dc6b6SHong Zhang 
1435c14dc6b6SHong Zhang       /* local sweep */
14369566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14372798e883SHong Zhang     }
14383a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1439da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14409566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14412798e883SHong Zhang       its--;
1442da3a660dSBarry Smith     }
14432798e883SHong Zhang     while (its--) {
14449566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14459566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14462798e883SHong Zhang 
1447c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14489566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14499566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14502798e883SHong Zhang 
1451c14dc6b6SHong Zhang       /* local sweep */
14529566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14532798e883SHong Zhang     }
1454a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1455a7420bb7SBarry Smith     Vec xx1;
1456a7420bb7SBarry Smith 
14579566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14589566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1459a7420bb7SBarry Smith 
14609566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14619566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1462a7420bb7SBarry Smith     if (!mat->diag) {
14639566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14649566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1465a7420bb7SBarry Smith     }
14669566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1467bd0c2dcbSBarry Smith     if (hasop) {
14689566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1469bd0c2dcbSBarry Smith     } else {
14709566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1471bd0c2dcbSBarry Smith     }
14729566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1473887ee2caSBarry Smith 
14749566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1475a7420bb7SBarry Smith 
1476a7420bb7SBarry Smith     /* local sweep */
14779566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14789566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14799566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1480ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1481c14dc6b6SHong Zhang 
14829566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1483a0808db4SHong Zhang 
14847b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14868a729477SBarry Smith }
1487a66be287SLois Curfman McInnes 
1488ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1489d71ae5a4SJacob Faibussowitsch {
149072e6a0cfSJed Brown   Mat             aA, aB, Aperm;
149172e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
149272e6a0cfSJed Brown   PetscScalar    *aa, *ba;
149372e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
149472e6a0cfSJed Brown   PetscSF         rowsf, sf;
14950298fd71SBarry Smith   IS              parcolp = NULL;
149672e6a0cfSJed Brown   PetscBool       done;
149742e855d1Svictor 
149842e855d1Svictor   PetscFunctionBegin;
14999566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
15009566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
15019566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
15029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
150372e6a0cfSJed Brown 
150472e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
15059566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
15069566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
15079566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
150872e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15099566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15109566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
151172e6a0cfSJed Brown 
151272e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15139566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15149566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
151672e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15179566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15199566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152072e6a0cfSJed Brown 
15219566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15229566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15239566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
152472e6a0cfSJed Brown 
152572e6a0cfSJed Brown   /* Find out where my gcols should go */
15269566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15289566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15299566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15309566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15319566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15329566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15339566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
153472e6a0cfSJed Brown 
15359566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15369566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15379566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
153872e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1539131c27b5Sprj-     PetscInt    row = rdest[i];
1540131c27b5Sprj-     PetscMPIInt rowner;
15419566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
154272e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1543131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1544131c27b5Sprj-       PetscMPIInt cowner;
15459566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
154672e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
154772e6a0cfSJed Brown       else onnz[i]++;
154872e6a0cfSJed Brown     }
154972e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1550131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1551131c27b5Sprj-       PetscMPIInt cowner;
15529566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
155372e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155472e6a0cfSJed Brown       else onnz[i]++;
155572e6a0cfSJed Brown     }
155672e6a0cfSJed Brown   }
15579566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15589566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15599566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15609566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15619566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
156272e6a0cfSJed Brown 
15639566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
156672e6a0cfSJed Brown   for (i = 0; i < m; i++) {
156772e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1568970468b0SJed Brown     PetscInt  j0, rowlen;
156972e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1570970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1571970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15729566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1573970468b0SJed Brown     }
157472e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1575970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1576970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15779566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1578970468b0SJed Brown     }
157972e6a0cfSJed Brown   }
15809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15829566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15839566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15849566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15859566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15869566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15879566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15889566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15899566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
159072e6a0cfSJed Brown   *B = Aperm;
15913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
159242e855d1Svictor }
159342e855d1Svictor 
1594ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1595d71ae5a4SJacob Faibussowitsch {
1596c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1597c5e4d11fSDmitry Karpeev 
1598c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
15999566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1600c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
16013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1602c5e4d11fSDmitry Karpeev }
1603c5e4d11fSDmitry Karpeev 
1604ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1605d71ae5a4SJacob Faibussowitsch {
1606a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1607a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16083966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1609a66be287SLois Curfman McInnes 
16103a40ed3dSBarry Smith   PetscFunctionBegin;
16114e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16129566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16132205254eSKarl Rupp 
16149371c9d4SSatish Balay   isend[0] = info->nz_used;
16159371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16169371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16179371c9d4SSatish Balay   isend[3] = info->memory;
16189371c9d4SSatish Balay   isend[4] = info->mallocs;
16192205254eSKarl Rupp 
16209566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16212205254eSKarl Rupp 
16229371c9d4SSatish Balay   isend[0] += info->nz_used;
16239371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16249371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16259371c9d4SSatish Balay   isend[3] += info->memory;
16269371c9d4SSatish Balay   isend[4] += info->mallocs;
1627a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16284e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16294e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16304e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16314e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16324e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1633a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
16341c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16352205254eSKarl Rupp 
16364e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16374e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16384e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16394e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16404e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1641a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
16421c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16432205254eSKarl Rupp 
16444e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16454e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16464e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16474e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16484e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1649a66be287SLois Curfman McInnes   }
16504e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16514e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16524e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1654a66be287SLois Curfman McInnes }
1655a66be287SLois Curfman McInnes 
1656d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1657d71ae5a4SJacob Faibussowitsch {
1658c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1659c74985f6SBarry Smith 
16603a40ed3dSBarry Smith   PetscFunctionBegin;
166112c028f9SKris Buschelman   switch (op) {
1662512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
166312c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
166428b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1665a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
166612c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16670ad02fcaSStefano Zampini   case MAT_USE_INODES:
166812c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16691a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1670fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16719566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16729566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
167312c028f9SKris Buschelman     break;
167412c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
167543674050SBarry Smith     MatCheckPreallocated(A, 1);
16764e0d8c25SBarry Smith     a->roworiented = flg;
16772205254eSKarl Rupp 
16789566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16799566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168012c028f9SKris Buschelman     break;
16818c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1682d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1683d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1684d71ae5a4SJacob Faibussowitsch     break;
1685d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1686d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1687d71ae5a4SJacob Faibussowitsch     break;
1688c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1689ffa07934SHong Zhang   case MAT_SPD:
169077e54ba9SKris Buschelman   case MAT_SYMMETRIC:
169177e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1692bf108f30SBarry Smith   case MAT_HERMITIAN:
1693bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1694b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1695b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1696b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
169777e54ba9SKris Buschelman     break;
1698d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1699d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1700d71ae5a4SJacob Faibussowitsch     break;
1701957cac9fSHong Zhang   case MAT_STRUCTURE_ONLY:
1702957cac9fSHong Zhang     /* The option is handled directly by MatSetOption() */
1703957cac9fSHong Zhang     break;
1704d71ae5a4SJacob Faibussowitsch   default:
1705d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
17063a40ed3dSBarry Smith   }
17073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1708c74985f6SBarry Smith }
1709c74985f6SBarry Smith 
1710d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1711d71ae5a4SJacob Faibussowitsch {
1712154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
171387828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1714d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1715d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1716b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
171739e00950SLois Curfman McInnes 
17183a40ed3dSBarry Smith   PetscFunctionBegin;
171928b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17207a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17217a0afa10SBarry Smith 
172270f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17237a0afa10SBarry Smith     /*
17247a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17257a0afa10SBarry Smith     */
17267a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1727b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1728d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17297a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17302205254eSKarl Rupp       if (max < tmp) max = tmp;
17317a0afa10SBarry Smith     }
17329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17337a0afa10SBarry Smith   }
17347a0afa10SBarry Smith 
1735aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1736abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
173739e00950SLois Curfman McInnes 
17389371c9d4SSatish Balay   pvA = &vworkA;
17399371c9d4SSatish Balay   pcA = &cworkA;
17409371c9d4SSatish Balay   pvB = &vworkB;
17419371c9d4SSatish Balay   pcB = &cworkB;
17429371c9d4SSatish Balay   if (!v) {
17439371c9d4SSatish Balay     pvA = NULL;
17449371c9d4SSatish Balay     pvB = NULL;
17459371c9d4SSatish Balay   }
17469371c9d4SSatish Balay   if (!idx) {
17479371c9d4SSatish Balay     pcA = NULL;
17489371c9d4SSatish Balay     if (!v) pcB = NULL;
17499371c9d4SSatish Balay   }
17509566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17519566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1752154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1753154123eaSLois Curfman McInnes 
175470f0671dSBarry Smith   cmap = mat->garray;
1755154123eaSLois Curfman McInnes   if (v || idx) {
1756154123eaSLois Curfman McInnes     if (nztot) {
1757154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1758b1d57f15SBarry Smith       PetscInt imark = -1;
1759154123eaSLois Curfman McInnes       if (v) {
176070f0671dSBarry Smith         *v = v_p = mat->rowvalues;
176139e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
176270f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1763154123eaSLois Curfman McInnes           else break;
1764154123eaSLois Curfman McInnes         }
1765154123eaSLois Curfman McInnes         imark = i;
176670f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
176770f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1768154123eaSLois Curfman McInnes       }
1769154123eaSLois Curfman McInnes       if (idx) {
177070f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
177170f0671dSBarry Smith         if (imark > -1) {
1772ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
177370f0671dSBarry Smith         } else {
1774154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
177570f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1776154123eaSLois Curfman McInnes             else break;
1777154123eaSLois Curfman McInnes           }
1778154123eaSLois Curfman McInnes           imark = i;
177970f0671dSBarry Smith         }
178070f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
178170f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
178239e00950SLois Curfman McInnes       }
17833f97c4b0SBarry Smith     } else {
1784f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1785f4259b30SLisandro Dalcin       if (v) *v = NULL;
17861ca473b0SSatish Balay     }
1787154123eaSLois Curfman McInnes   }
178839e00950SLois Curfman McInnes   *nz = nztot;
17899566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17909566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179239e00950SLois Curfman McInnes }
179339e00950SLois Curfman McInnes 
1794d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1795d71ae5a4SJacob Faibussowitsch {
17967a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
17973a40ed3dSBarry Smith 
17983a40ed3dSBarry Smith   PetscFunctionBegin;
179928b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
18007a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
18013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
180239e00950SLois Curfman McInnes }
180339e00950SLois Curfman McInnes 
1804ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1805d71ae5a4SJacob Faibussowitsch {
1806855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1807ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1808d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1809329f5518SBarry Smith   PetscReal        sum = 0.0;
1810fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
181104ca555eSLois Curfman McInnes 
18123a40ed3dSBarry Smith   PetscFunctionBegin;
181317699dbbSLois Curfman McInnes   if (aij->size == 1) {
18149566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
181537fa93a5SLois Curfman McInnes   } else {
18169566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
181804ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1819fff043a9SJunchao Zhang       v = amata;
182004ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18219371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18229371c9d4SSatish Balay         v++;
182304ca555eSLois Curfman McInnes       }
1824fff043a9SJunchao Zhang       v = bmata;
182504ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18269371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18279371c9d4SSatish Balay         v++;
182804ca555eSLois Curfman McInnes       }
18291c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18308f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18319566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18323a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1833329f5518SBarry Smith       PetscReal *tmp, *tmp2;
1834b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18359566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
18369566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2));
183704ca555eSLois Curfman McInnes       *norm = 0.0;
18389371c9d4SSatish Balay       v     = amata;
18399371c9d4SSatish Balay       jj    = amat->j;
184004ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18419371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18429371c9d4SSatish Balay         v++;
184304ca555eSLois Curfman McInnes       }
18449371c9d4SSatish Balay       v  = bmata;
18459371c9d4SSatish Balay       jj = bmat->j;
184604ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18479371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18489371c9d4SSatish Balay         v++;
184904ca555eSLois Curfman McInnes       }
18501c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1851d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
185204ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
185304ca555eSLois Curfman McInnes       }
18549566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18559566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
18569566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18573a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1858329f5518SBarry Smith       PetscReal ntemp = 0.0;
1859d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18608e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
186104ca555eSLois Curfman McInnes         sum = 0.0;
186204ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18639371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18649371c9d4SSatish Balay           v++;
186504ca555eSLois Curfman McInnes         }
18668e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
186704ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18689371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18699371c9d4SSatish Balay           v++;
187004ca555eSLois Curfman McInnes         }
1871515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
187204ca555eSLois Curfman McInnes       }
18731c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18749566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1875ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18769566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18779566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
187837fa93a5SLois Curfman McInnes   }
18793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1880855ac2c5SLois Curfman McInnes }
1881855ac2c5SLois Curfman McInnes 
1882ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1883d71ae5a4SJacob Faibussowitsch {
1884a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1885a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1886071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1887071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1888a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1889ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1890b7c46309SBarry Smith 
18913a40ed3dSBarry Smith   PetscFunctionBegin;
18927fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18939371c9d4SSatish Balay   ma = A->rmap->n;
18949371c9d4SSatish Balay   na = A->cmap->n;
18959371c9d4SSatish Balay   mb = a->B->rmap->n;
18969371c9d4SSatish Balay   nb = a->B->cmap->n;
18979371c9d4SSatish Balay   ai = Aloc->i;
18989371c9d4SSatish Balay   aj = Aloc->j;
18999371c9d4SSatish Balay   bi = Bloc->i;
19009371c9d4SSatish Balay   bj = Bloc->j;
1901fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
190280bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
190380bcc5a1SJed Brown     PetscSFNode         *oloc;
1904713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
190580bcc5a1SJed Brown 
19069566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
190780bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19089566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1909cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
191080bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19119566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
191280bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
191380bcc5a1SJed Brown     /* map those to global */
19149566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19159566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19169566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19179566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
191857168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
191957168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19209566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1921d4bb536fSBarry Smith 
19229566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19239566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
19249566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs)));
19259566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19269566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19279566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1928fc4dec0aSBarry Smith   } else {
1929fc4dec0aSBarry Smith     B = *matout;
19309566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1931fc4dec0aSBarry Smith   }
1932b7c46309SBarry Smith 
1933f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1934a8661f62Sandi selinger   A_diag      = a->A;
1935a8661f62Sandi selinger   B_diag      = &b->A;
1936a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1937a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1938a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1939a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1940f79cb1a0Sandi selinger 
1941f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1942ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1943f79cb1a0Sandi selinger 
19444cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1945a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19467fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19479566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1948f79cb1a0Sandi selinger 
1949b7c46309SBarry Smith   /* copy over the B part */
19509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1952ce496241SStefano Zampini   pbv = bv;
1953d0f46423SBarry Smith   row = A->rmap->rstart;
19542205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
195561a2fbbaSHong Zhang   cols_tmp = cols;
1956da668accSHong Zhang   for (i = 0; i < mb; i++) {
1957da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19589566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19592205254eSKarl Rupp     row++;
1960720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1961720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1962b7c46309SBarry Smith   }
19639566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1965fc73b1b3SBarry Smith 
19669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1968cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19690de55854SLois Curfman McInnes     *matout = B;
19700de55854SLois Curfman McInnes   } else {
19719566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19720de55854SLois Curfman McInnes   }
19733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1974b7c46309SBarry Smith }
1975b7c46309SBarry Smith 
1976ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1977d71ae5a4SJacob Faibussowitsch {
19784b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19794b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1980b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1981a008b906SSatish Balay 
19823a40ed3dSBarry Smith   PetscFunctionBegin;
19839566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19844b967eb1SSatish Balay   if (rr) {
19859566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
198608401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19874b967eb1SSatish Balay     /* Overlap communication with computation. */
19889566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1989a008b906SSatish Balay   }
19904b967eb1SSatish Balay   if (ll) {
19919566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
199208401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1993dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19944b967eb1SSatish Balay   }
19954b967eb1SSatish Balay   /* scale  the diagonal block */
1996dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19974b967eb1SSatish Balay 
19984b967eb1SSatish Balay   if (rr) {
19994b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
20009566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
2001dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
20024b967eb1SSatish Balay   }
20033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2004a008b906SSatish Balay }
2005a008b906SSatish Balay 
2006ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2007d71ae5a4SJacob Faibussowitsch {
2008bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20093a40ed3dSBarry Smith 
20103a40ed3dSBarry Smith   PetscFunctionBegin;
20119566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2013bb5a7306SBarry Smith }
2014bb5a7306SBarry Smith 
2015ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2016d71ae5a4SJacob Faibussowitsch {
2017d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2018d4bb536fSBarry Smith   Mat         a, b, c, d;
2019ace3abfcSBarry Smith   PetscBool   flg;
2020d4bb536fSBarry Smith 
20213a40ed3dSBarry Smith   PetscFunctionBegin;
20229371c9d4SSatish Balay   a = matA->A;
20239371c9d4SSatish Balay   b = matA->B;
20249371c9d4SSatish Balay   c = matB->A;
20259371c9d4SSatish Balay   d = matB->B;
2026d4bb536fSBarry Smith 
20279566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
202848a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
20291c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2031d4bb536fSBarry Smith }
2032d4bb536fSBarry Smith 
2033ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2034d71ae5a4SJacob Faibussowitsch {
2035cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2036cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2037cb5b572fSBarry Smith 
2038cb5b572fSBarry Smith   PetscFunctionBegin;
203933f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
204033f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2041cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2042cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2043cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2044cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2045cb5b572fSBarry Smith        then copying the submatrices */
20469566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2047cb5b572fSBarry Smith   } else {
20489566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20499566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2050cb5b572fSBarry Smith   }
20519566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2053cb5b572fSBarry Smith }
2054cb5b572fSBarry Smith 
2055001ddc4fSHong Zhang /*
2056001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2057001ddc4fSHong Zhang    have different nonzero structure.
2058001ddc4fSHong Zhang */
2059d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2060d71ae5a4SJacob Faibussowitsch {
2061001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
206295b7e79eSJed Brown 
206395b7e79eSJed Brown   PetscFunctionBegin;
206495b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
206595b7e79eSJed Brown   for (i = 0; i < m; i++) {
20668e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2067001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2068001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
206995b7e79eSJed Brown     nnz[i] = 0;
207095b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2071001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2072001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
207395b7e79eSJed Brown       nnz[i]++;
207495b7e79eSJed Brown     }
207595b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
207695b7e79eSJed Brown   }
20773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207895b7e79eSJed Brown }
207995b7e79eSJed Brown 
2080001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2081d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2082d71ae5a4SJacob Faibussowitsch {
2083001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2084001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2085001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2086001ddc4fSHong Zhang 
2087001ddc4fSHong Zhang   PetscFunctionBegin;
20889566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2090001ddc4fSHong Zhang }
2091001ddc4fSHong Zhang 
2092ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2093d71ae5a4SJacob Faibussowitsch {
2094ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2095ac90fabeSBarry Smith 
2096ac90fabeSBarry Smith   PetscFunctionBegin;
2097ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
20989566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
20999566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2100ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
21019566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2102ac90fabeSBarry Smith   } else {
21039f5f6813SShri Abhyankar     Mat       B;
21049f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2105d9d719b4SStefano Zampini 
21069566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21089566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21099566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21109566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21119566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21129566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21139566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21149566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21159566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21169566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21179566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21189566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2119ac90fabeSBarry Smith   }
21203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2121ac90fabeSBarry Smith }
2122ac90fabeSBarry Smith 
21232726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2124354c94deSBarry Smith 
2125ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2126d71ae5a4SJacob Faibussowitsch {
21275f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21285f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2129354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2130354c94deSBarry Smith 
21319566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21329566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21335f80ce2aSJacob Faibussowitsch   }
21343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2135354c94deSBarry Smith }
2136354c94deSBarry Smith 
2137ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2138d71ae5a4SJacob Faibussowitsch {
213999cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214099cafbc1SBarry Smith 
214199cafbc1SBarry Smith   PetscFunctionBegin;
21429566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21439566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214599cafbc1SBarry Smith }
214699cafbc1SBarry Smith 
2147ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2148d71ae5a4SJacob Faibussowitsch {
214999cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
215099cafbc1SBarry Smith 
215199cafbc1SBarry Smith   PetscFunctionBegin;
21529566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21539566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215599cafbc1SBarry Smith }
215699cafbc1SBarry Smith 
2157ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2158d71ae5a4SJacob Faibussowitsch {
2159c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2160475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
2161475b8b61SHong Zhang   PetscScalar       *va, *vv;
2162475b8b61SHong Zhang   Vec                vB, vA;
2163475b8b61SHong Zhang   const PetscScalar *vb;
2164c91732d9SHong Zhang 
2165c91732d9SHong Zhang   PetscFunctionBegin;
21669566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
21679566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2168475b8b61SHong Zhang 
21699566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
2170c91732d9SHong Zhang   if (idx) {
2171475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2172d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2173c91732d9SHong Zhang     }
2174c91732d9SHong Zhang   }
2175c91732d9SHong Zhang 
21769566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
21779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2179c91732d9SHong Zhang 
21809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2182475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2183c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2184475b8b61SHong Zhang       vv[i] = vb[i];
2185c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2186475b8b61SHong Zhang     } else {
2187475b8b61SHong Zhang       vv[i] = va[i];
21889371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2189c91732d9SHong Zhang     }
2190c91732d9SHong Zhang   }
21919566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
21929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
21939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21949566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2198c91732d9SHong Zhang }
2199c91732d9SHong Zhang 
2200eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2201eede4a3fSMark Adams {
2202eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2203eede4a3fSMark Adams   PetscInt    m = A->rmap->n;
2204eede4a3fSMark Adams   Vec         vB, vA;
2205eede4a3fSMark Adams 
2206eede4a3fSMark Adams   PetscFunctionBegin;
2207eede4a3fSMark Adams   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
2208eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2209eede4a3fSMark Adams   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
2210eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2211eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2212eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2213eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2214eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2215eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2216eede4a3fSMark Adams }
2217eede4a3fSMark Adams 
2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2219d71ae5a4SJacob Faibussowitsch {
2220f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2221f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2222f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2223f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2224f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2225f07e67edSHong Zhang   Vec                diagV, offdiagV;
2226ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2227ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2228f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2229f07e67edSHong Zhang   Mat                B = mat->B;
2230f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2231c87e5d42SMatthew Knepley 
2232c87e5d42SMatthew Knepley   PetscFunctionBegin;
2233f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2234f07e67edSHong Zhang   if (A->cmap->N == n) {
22359566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22369566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22379566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22389566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22399566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22403ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2241f07e67edSHong Zhang   } else if (n == 0) {
2242f07e67edSHong Zhang     if (m) {
22439566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22449371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22459371c9d4SSatish Balay         a[r] = 0.0;
22469371c9d4SSatish Balay         if (idx) idx[r] = -1;
22479371c9d4SSatish Balay       }
22489566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2249f07e67edSHong Zhang     }
22503ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2251f07e67edSHong Zhang   }
2252f07e67edSHong Zhang 
22539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22549566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22559566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22569566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2257f07e67edSHong Zhang 
2258f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22599566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2260ce496241SStefano Zampini   ba = bav;
2261f07e67edSHong Zhang   bi = b->i;
2262f07e67edSHong Zhang   bj = b->j;
22639566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2264f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2265f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2266f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22679371c9d4SSatish Balay       offdiagA[r]   = *ba;
22689371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2269f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2270f07e67edSHong Zhang       offdiagA[r] = 0.0;
2271f07e67edSHong Zhang 
2272f07e67edSHong Zhang       /* Find first hole in the cmap */
2273f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2274f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2275f07e67edSHong Zhang         if (col > j && j < cstart) {
2276f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2277f07e67edSHong Zhang           break;
2278f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2279f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2280f07e67edSHong Zhang           break;
2281f07e67edSHong Zhang         }
2282f07e67edSHong Zhang       }
22834e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2284f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2285f07e67edSHong Zhang         if (ncols == 0) {
2286f07e67edSHong Zhang           if (cstart) {
2287f07e67edSHong Zhang             offdiagIdx[r] = 0;
2288f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2289f07e67edSHong Zhang         } else { /* ncols > 0 */
2290f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2291f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2292f07e67edSHong Zhang         }
2293f07e67edSHong Zhang       }
2294f07e67edSHong Zhang     }
2295f07e67edSHong Zhang 
2296f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22979371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22989371c9d4SSatish Balay         offdiagA[r]   = *ba;
22999371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
23009371c9d4SSatish Balay       }
23019371c9d4SSatish Balay       ba++;
23029371c9d4SSatish Balay       bj++;
2303f07e67edSHong Zhang     }
2304f07e67edSHong Zhang   }
2305f07e67edSHong Zhang 
23069566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
23079566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2308f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2309f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2310f07e67edSHong Zhang       a[r] = diagA[r];
2311f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2312f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2313f07e67edSHong Zhang       a[r] = diagA[r];
2314c87e5d42SMatthew Knepley       if (idx) {
2315f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2316f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2317f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2318f07e67edSHong Zhang       }
2319f07e67edSHong Zhang     } else {
2320f07e67edSHong Zhang       a[r] = offdiagA[r];
2321f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2322c87e5d42SMatthew Knepley     }
2323c87e5d42SMatthew Knepley   }
23249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23279566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23289566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23299566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23309566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2332c87e5d42SMatthew Knepley }
2333c87e5d42SMatthew Knepley 
2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2335d71ae5a4SJacob Faibussowitsch {
233603bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2337fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2338fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
233903bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
234003bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
234103bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2342ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2343ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2344fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2345fa213d2fSHong Zhang   Mat                B = mat->B;
2346fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
234703bc72f1SMatthew Knepley 
234803bc72f1SMatthew Knepley   PetscFunctionBegin;
2349fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2350fa213d2fSHong Zhang   if (A->cmap->N == n) {
23519566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23529566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23539566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23549566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23559566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23563ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2357fa213d2fSHong Zhang   } else if (n == 0) {
2358fa213d2fSHong Zhang     if (m) {
23599566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23609371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23619371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23629371c9d4SSatish Balay         if (idx) idx[r] = -1;
23639371c9d4SSatish Balay       }
23649566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2365fa213d2fSHong Zhang     }
23663ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2367fa213d2fSHong Zhang   }
2368fa213d2fSHong Zhang 
23699566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23709566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23719566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23729566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2373fa213d2fSHong Zhang 
2374fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23759566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2376ce496241SStefano Zampini   ba = bav;
2377fa213d2fSHong Zhang   bi = b->i;
2378fa213d2fSHong Zhang   bj = b->j;
23799566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2380fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2381fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2382fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23839371c9d4SSatish Balay       offdiagA[r]   = *ba;
23849371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2385fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2386fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2387fa213d2fSHong Zhang 
2388fa213d2fSHong Zhang       /* Find first hole in the cmap */
2389fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2390fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2391fa213d2fSHong Zhang         if (col > j && j < cstart) {
2392fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2393fa213d2fSHong Zhang           break;
2394fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2395fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2396fa213d2fSHong Zhang           break;
2397fa213d2fSHong Zhang         }
2398fa213d2fSHong Zhang       }
23994e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2400fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2401fa213d2fSHong Zhang         if (ncols == 0) {
2402fa213d2fSHong Zhang           if (cstart) {
2403fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2404fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2405fa213d2fSHong Zhang         } else { /* ncols > 0 */
2406fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2407fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2408fa213d2fSHong Zhang         }
2409fa213d2fSHong Zhang       }
2410fa213d2fSHong Zhang     }
2411fa213d2fSHong Zhang 
2412fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24139371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24149371c9d4SSatish Balay         offdiagA[r]   = *ba;
24159371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24169371c9d4SSatish Balay       }
24179371c9d4SSatish Balay       ba++;
24189371c9d4SSatish Balay       bj++;
2419fa213d2fSHong Zhang     }
2420fa213d2fSHong Zhang   }
2421fa213d2fSHong Zhang 
24229566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24239566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2424fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2425fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
242603bc72f1SMatthew Knepley       a[r] = diagA[r];
2427fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2428fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2429fa213d2fSHong Zhang       a[r] = diagA[r];
2430fa213d2fSHong Zhang       if (idx) {
2431fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
243203bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2433fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2434fa213d2fSHong Zhang       }
243503bc72f1SMatthew Knepley     } else {
243603bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2437fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
243803bc72f1SMatthew Knepley     }
243903bc72f1SMatthew Knepley   }
24409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24419566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24439566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24449566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24459566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24469566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244803bc72f1SMatthew Knepley }
244903bc72f1SMatthew Knepley 
2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2451d71ae5a4SJacob Faibussowitsch {
2452c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24531a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24541a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2455c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2456c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2457c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2458ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2459ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24601a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24611a254869SHong Zhang   Mat                B = mat->B;
24621a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2463c87e5d42SMatthew Knepley 
2464c87e5d42SMatthew Knepley   PetscFunctionBegin;
24651a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24661a254869SHong Zhang   if (A->cmap->N == n) {
24679566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24689566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24699566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24709566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24719566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24723ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24731a254869SHong Zhang   } else if (n == 0) {
24741a254869SHong Zhang     if (m) {
24759566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24769371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24779371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24789371c9d4SSatish Balay         if (idx) idx[r] = -1;
24799371c9d4SSatish Balay       }
24809566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24811a254869SHong Zhang     }
24823ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24831a254869SHong Zhang   }
24841a254869SHong Zhang 
24859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24869566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24879566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24889566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24891a254869SHong Zhang 
24901a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2492ce496241SStefano Zampini   ba = bav;
24931a254869SHong Zhang   bi = b->i;
24941a254869SHong Zhang   bj = b->j;
24959566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24961a254869SHong Zhang   for (r = 0; r < m; r++) {
24971a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24981a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24999371c9d4SSatish Balay       offdiagA[r]   = *ba;
25009371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
25011a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
25021a254869SHong Zhang       offdiagA[r] = 0.0;
25031a254869SHong Zhang 
25041a254869SHong Zhang       /* Find first hole in the cmap */
25051a254869SHong Zhang       for (j = 0; j < ncols; j++) {
25061a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
25071a254869SHong Zhang         if (col > j && j < cstart) {
25081a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25091a254869SHong Zhang           break;
25101a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25111a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25121a254869SHong Zhang           break;
25131a254869SHong Zhang         }
25141a254869SHong Zhang       }
25154e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25161a254869SHong Zhang         /* a hole is outside compressed Bcols */
25171a254869SHong Zhang         if (ncols == 0) {
25181a254869SHong Zhang           if (cstart) {
25191a254869SHong Zhang             offdiagIdx[r] = 0;
25201a254869SHong Zhang           } else offdiagIdx[r] = cend;
25211a254869SHong Zhang         } else { /* ncols > 0 */
25221a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25231a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25241a254869SHong Zhang         }
25251a254869SHong Zhang       }
25261a254869SHong Zhang     }
25271a254869SHong Zhang 
25281a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25299371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25309371c9d4SSatish Balay         offdiagA[r]   = *ba;
25319371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25329371c9d4SSatish Balay       }
25339371c9d4SSatish Balay       ba++;
25349371c9d4SSatish Balay       bj++;
25351a254869SHong Zhang     }
25361a254869SHong Zhang   }
25371a254869SHong Zhang 
25389566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25399566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25401a254869SHong Zhang   for (r = 0; r < m; ++r) {
25411a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2542c87e5d42SMatthew Knepley       a[r] = diagA[r];
25431a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25441a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25451a254869SHong Zhang       a[r] = diagA[r];
25461a254869SHong Zhang       if (idx) {
25471a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2548c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25491a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25501a254869SHong Zhang       }
2551c87e5d42SMatthew Knepley     } else {
2552c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25531a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2554c87e5d42SMatthew Knepley     }
2555c87e5d42SMatthew Knepley   }
25569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25579566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25599566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25609566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25619566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25629566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2564c87e5d42SMatthew Knepley }
2565c87e5d42SMatthew Knepley 
2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2567d71ae5a4SJacob Faibussowitsch {
2568f6d58c54SBarry Smith   Mat *dummy;
25695494a064SHong Zhang 
25705494a064SHong Zhang   PetscFunctionBegin;
25719566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2572f6d58c54SBarry Smith   *newmat = *dummy;
25739566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25755494a064SHong Zhang }
25765494a064SHong Zhang 
2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2578d71ae5a4SJacob Faibussowitsch {
2579bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2580bbead8a2SBarry Smith 
2581bbead8a2SBarry Smith   PetscFunctionBegin;
25829566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25837b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2585bbead8a2SBarry Smith }
2586bbead8a2SBarry Smith 
2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2588d71ae5a4SJacob Faibussowitsch {
258973a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
259073a71a0fSBarry Smith 
259173a71a0fSBarry Smith   PetscFunctionBegin;
259208401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25939566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2594679944adSJunchao Zhang   if (x->assembled) {
25959566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2596679944adSJunchao Zhang   } else {
25979566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2598679944adSJunchao Zhang   }
25999566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
26009566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
26013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
260273a71a0fSBarry Smith }
2603bbead8a2SBarry Smith 
2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2605d71ae5a4SJacob Faibussowitsch {
2606b1b1104fSBarry Smith   PetscFunctionBegin;
2607b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2608b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2610b1b1104fSBarry Smith }
2611b1b1104fSBarry Smith 
2612b1b1104fSBarry Smith /*@
2613f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2614f2afee66SBarry Smith 
26152ef1f0ffSBarry Smith   Not Collective
2616f2afee66SBarry Smith 
2617f2afee66SBarry Smith   Input Parameter:
2618f2afee66SBarry Smith . A - the matrix
2619f2afee66SBarry Smith 
2620f2afee66SBarry Smith   Output Parameter:
2621f2afee66SBarry Smith . nz - the number of nonzeros
2622f2afee66SBarry Smith 
2623f2afee66SBarry Smith   Level: advanced
2624f2afee66SBarry Smith 
2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2626f2afee66SBarry Smith @*/
2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2628d71ae5a4SJacob Faibussowitsch {
2629f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2630f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2631dfebb78cSStefano Zampini   PetscBool   isaij;
2632f2afee66SBarry Smith 
2633f2afee66SBarry Smith   PetscFunctionBegin;
2634dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2635dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2636f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2638f2afee66SBarry Smith }
2639f2afee66SBarry Smith 
2640f2afee66SBarry Smith /*@
2641b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2642b1b1104fSBarry Smith 
2643c3339decSBarry Smith   Collective
2644b1b1104fSBarry Smith 
2645b1b1104fSBarry Smith   Input Parameters:
2646b1b1104fSBarry Smith + A  - the matrix
264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2648b1b1104fSBarry Smith 
264996a0c994SBarry Smith   Level: advanced
265096a0c994SBarry Smith 
2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2652b1b1104fSBarry Smith @*/
2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2654d71ae5a4SJacob Faibussowitsch {
2655b1b1104fSBarry Smith   PetscFunctionBegin;
2656cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2658b1b1104fSBarry Smith }
2659b1b1104fSBarry Smith 
2660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject)
2661d71ae5a4SJacob Faibussowitsch {
2662b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2663b1b1104fSBarry Smith 
2664b1b1104fSBarry Smith   PetscFunctionBegin;
2665d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2666b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26679566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26681baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2669d0609cedSBarry Smith   PetscOptionsHeadEnd();
26703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2671b1b1104fSBarry Smith }
2672b1b1104fSBarry Smith 
2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2674d71ae5a4SJacob Faibussowitsch {
26757d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2676c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26777d68702bSBarry Smith 
26787d68702bSBarry Smith   PetscFunctionBegin;
2679c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26809566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26815519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2682b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26839566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2684b83222d8SBarry Smith     aij->nonew = nonew;
26857d68702bSBarry Smith   }
26869566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26887d68702bSBarry Smith }
26897d68702bSBarry Smith 
2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2691d71ae5a4SJacob Faibussowitsch {
26923b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26933b49f96aSBarry Smith 
26943b49f96aSBarry Smith   PetscFunctionBegin;
269508401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26969566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26973b49f96aSBarry Smith   if (d) {
26983b49f96aSBarry Smith     PetscInt rstart;
26999566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
27003b49f96aSBarry Smith     *d += rstart;
27013b49f96aSBarry Smith   }
27023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27033b49f96aSBarry Smith }
27043b49f96aSBarry Smith 
2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2706d71ae5a4SJacob Faibussowitsch {
2707a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2708a8ee9fb5SBarry Smith 
2709a8ee9fb5SBarry Smith   PetscFunctionBegin;
27109566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2712a8ee9fb5SBarry Smith }
27133b49f96aSBarry Smith 
271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2715dec0b466SHong Zhang {
2716dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2717dec0b466SHong Zhang 
2718dec0b466SHong Zhang   PetscFunctionBegin;
271958c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
272058c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2722dec0b466SHong Zhang }
2723dec0b466SHong Zhang 
2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2725cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2726cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2727cda55fadSBarry Smith                                        MatMult_MPIAIJ,
272897304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27297c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27307c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2731f4259b30SLisandro Dalcin                                        NULL,
2732f4259b30SLisandro Dalcin                                        NULL,
2733f4259b30SLisandro Dalcin                                        NULL,
2734f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2735f4259b30SLisandro Dalcin                                        NULL,
2736f4259b30SLisandro Dalcin                                        NULL,
273741f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2738b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
273997304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2740cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2741cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2742cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2743cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
274497304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2745cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2746cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2747cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2748d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2749f4259b30SLisandro Dalcin                                        NULL,
2750f4259b30SLisandro Dalcin                                        NULL,
2751f4259b30SLisandro Dalcin                                        NULL,
2752f4259b30SLisandro Dalcin                                        NULL,
275326cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2754f4259b30SLisandro Dalcin                                        NULL,
2755f4259b30SLisandro Dalcin                                        NULL,
2756a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2757f4259b30SLisandro Dalcin                                        NULL,
2758d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2759f4259b30SLisandro Dalcin                                        NULL,
2760f4259b30SLisandro Dalcin                                        NULL,
2761f4259b30SLisandro Dalcin                                        NULL,
2762f4259b30SLisandro Dalcin                                        NULL,
2763d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27647dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2765cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2766cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2767cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2768d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2769cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27707d68702bSBarry Smith                                        MatShift_MPIAIJ,
277199e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2772564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
277373a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27748a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27758a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2776f4259b30SLisandro Dalcin                                        NULL,
2777f4259b30SLisandro Dalcin                                        NULL,
277893dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2779f4259b30SLisandro Dalcin                                        NULL,
2780cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
278172e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2782f4259b30SLisandro Dalcin                                        NULL,
27837dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2784e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2785e03a110bSBarry Smith                                        MatView_MPIAIJ,
2786f4259b30SLisandro Dalcin                                        NULL,
2787f4259b30SLisandro Dalcin                                        NULL,
2788f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2789f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2790f4259b30SLisandro Dalcin                                        NULL,
2791f4259b30SLisandro Dalcin                                        NULL,
2792f4259b30SLisandro Dalcin                                        NULL,
2793d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2794c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2795f4259b30SLisandro Dalcin                                        NULL,
2796f4259b30SLisandro Dalcin                                        NULL,
2797f4259b30SLisandro Dalcin                                        NULL,
2798f4259b30SLisandro Dalcin                                        NULL,
27993acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2800b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2801f4259b30SLisandro Dalcin                                        NULL,
2802f4259b30SLisandro Dalcin                                        NULL,
2803f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2804f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2805f4259b30SLisandro Dalcin                                        NULL,
2806f4259b30SLisandro Dalcin                                        NULL,
28075bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
2808a3bbdb47SHong Zhang                                        MatIsSymmetric_MPIAIJ,
2809f4259b30SLisandro Dalcin                                        NULL,
2810f4259b30SLisandro Dalcin                                        NULL,
2811f4259b30SLisandro Dalcin                                        NULL,
2812f4259b30SLisandro Dalcin                                        NULL,
2813f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2814f4259b30SLisandro Dalcin                                        NULL,
281526be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2816f4259b30SLisandro Dalcin                                        NULL,
2817f4259b30SLisandro Dalcin                                        NULL,
2818cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2819f4259b30SLisandro Dalcin                                        NULL,
2820f4259b30SLisandro Dalcin                                        NULL,
2821f4259b30SLisandro Dalcin                                        NULL,
2822b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28234222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2824f4259b30SLisandro Dalcin                                        NULL,
2825f4259b30SLisandro Dalcin                                        NULL,
28262fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2827f4259b30SLisandro Dalcin                                        NULL,
2828d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
282999cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
283069db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2831f4259b30SLisandro Dalcin                                        NULL,
2832f4259b30SLisandro Dalcin                                        NULL,
2833f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2834f4259b30SLisandro Dalcin                                        NULL,
28355494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2836f4259b30SLisandro Dalcin                                        NULL,
28373b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2838d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2839f4259b30SLisandro Dalcin                                        NULL,
2840c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2841f4259b30SLisandro Dalcin                                        NULL,
2842f4259b30SLisandro Dalcin                                        NULL,
2843b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2844f4259b30SLisandro Dalcin                                        NULL,
2845f4259b30SLisandro Dalcin                                        NULL,
2846f4259b30SLisandro Dalcin                                        NULL,
2847b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2848f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2849a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2850bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2851a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28527dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2853f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2854f4259b30SLisandro Dalcin                                        NULL,
2855f4259b30SLisandro Dalcin                                        NULL,
2856187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2857f4259b30SLisandro Dalcin                                        NULL,
2858f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2859f4259b30SLisandro Dalcin                                        NULL,
2860f4259b30SLisandro Dalcin                                        NULL,
2861f4259b30SLisandro Dalcin                                        NULL,
2862f4259b30SLisandro Dalcin                                        NULL,
286346533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2864f4259b30SLisandro Dalcin                                        NULL,
2865f4259b30SLisandro Dalcin                                        NULL,
28669c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2867a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28684222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2869f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2870f4259b30SLisandro Dalcin                                        NULL,
287172833a62Smarkadams4                                        NULL,
287272833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28732d776b49SBarry Smith                                        NULL,
2874dec0b466SHong Zhang                                        /*150*/ NULL,
2875eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
2876eede4a3fSMark Adams                                        MatGetRowSumAbs_MPIAIJ};
287736ce4990SBarry Smith 
2878ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2879d71ae5a4SJacob Faibussowitsch {
28802e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28812e8a6d31SBarry Smith 
28822e8a6d31SBarry Smith   PetscFunctionBegin;
28839566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28849566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28862e8a6d31SBarry Smith }
28872e8a6d31SBarry Smith 
2888ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2889d71ae5a4SJacob Faibussowitsch {
28902e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28912e8a6d31SBarry Smith 
28922e8a6d31SBarry Smith   PetscFunctionBegin;
28939566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28949566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28962e8a6d31SBarry Smith }
28978a729477SBarry Smith 
2898d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2899d71ae5a4SJacob Faibussowitsch {
2900ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
29015d2a9ed1SStefano Zampini   PetscMPIInt size;
2902a23d5eceSKris Buschelman 
2903a23d5eceSKris Buschelman   PetscFunctionBegin;
2904ad79cf63SBarry Smith   if (B->hash_active) {
2905aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2906ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2907ad79cf63SBarry Smith   }
29089566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29099566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2910899cda47SBarry Smith 
2911cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2912eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2913cb7b82ddSBarry Smith #else
29149566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2915cb7b82ddSBarry Smith #endif
29169566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29179566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29189566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2919cb7b82ddSBarry Smith 
29209566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2921c508b908SBarry Smith 
2922c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29239566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29249566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29259566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29269566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29279566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2928c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2929cb7b82ddSBarry Smith 
2930c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2931ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29329566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29339566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29349566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29359566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2936c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2937899cda47SBarry Smith 
29389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2940526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2941cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
294215001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2944a23d5eceSKris Buschelman }
2945a23d5eceSKris Buschelman 
2946ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2947d71ae5a4SJacob Faibussowitsch {
2948ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2949846b4da1SFande Kong 
2950846b4da1SFande Kong   PetscFunctionBegin;
2951846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29529566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29539566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2954846b4da1SFande Kong 
2955846b4da1SFande Kong #if defined(PETSC_USE_CTABLE)
2956eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2957846b4da1SFande Kong #else
29589566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2959846b4da1SFande Kong #endif
29609566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29619566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29629566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2963846b4da1SFande Kong 
29649566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->A));
29659566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->B));
2966846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2967846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2968846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
29693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2970846b4da1SFande Kong }
2971846b4da1SFande Kong 
2972d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2973d71ae5a4SJacob Faibussowitsch {
2974d6dfbf8fSBarry Smith   Mat         mat;
2975416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2976d6dfbf8fSBarry Smith 
29773a40ed3dSBarry Smith   PetscFunctionBegin;
2978f4259b30SLisandro Dalcin   *newmat = NULL;
29799566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29809566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29819566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29829566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2983273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2984e1b6402fSHong Zhang 
2985d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2986501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2987e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2988d6dfbf8fSBarry Smith 
298917699dbbSLois Curfman McInnes   a->size         = oldmat->size;
299017699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2991e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2992e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2993501880eeSStefano Zampini   a->rowindices   = NULL;
2994501880eeSStefano Zampini   a->rowvalues    = NULL;
2995bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
2996d6dfbf8fSBarry Smith 
29979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
29989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2999420957c1SBarry Smith   if (matin->hash_active) {
3000420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3001420957c1SBarry Smith   } else {
3002420957c1SBarry Smith     mat->preallocated = matin->preallocated;
30032ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
3004aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3005eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
3006b1fc9764SSatish Balay #else
30079566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
30089566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
3009b1fc9764SSatish Balay #endif
3010501880eeSStefano Zampini     } else a->colmap = NULL;
30113f41c07dSBarry Smith     if (oldmat->garray) {
3012b1d57f15SBarry Smith       PetscInt len;
3013d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30149566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30159566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3016501880eeSStefano Zampini     } else a->garray = NULL;
3017d6dfbf8fSBarry Smith 
30180de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30190de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30200de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3021aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3022aa624791SPierre Jolivet     if (oldmat->Mvctx) PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
30239566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30249566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3025420957c1SBarry Smith   }
30269566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30278a729477SBarry Smith   *newmat = mat;
30283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30298a729477SBarry Smith }
3030416022c9SBarry Smith 
3031d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3032d71ae5a4SJacob Faibussowitsch {
303352f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
303452f91c60SVaclav Hapla 
303552f91c60SVaclav Hapla   PetscFunctionBegin;
303652f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
303752f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3038c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30399566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30409566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30419566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
304252f91c60SVaclav Hapla   if (isbinary) {
30439566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
304452f91c60SVaclav Hapla   } else if (ishdf5) {
304552f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30469566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
304752f91c60SVaclav Hapla #else
304852f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
304952f91c60SVaclav Hapla #endif
305052f91c60SVaclav Hapla   } else {
305198921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
305252f91c60SVaclav Hapla   }
30533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
305452f91c60SVaclav Hapla }
305552f91c60SVaclav Hapla 
3056d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3057d71ae5a4SJacob Faibussowitsch {
30583ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30593ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30603ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30618fb81238SShri Abhyankar 
30628fb81238SShri Abhyankar   PetscFunctionBegin;
30639566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30648fb81238SShri Abhyankar 
30653ea6fe3dSLisandro Dalcin   /* read in matrix header */
30669566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
306708401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30689371c9d4SSatish Balay   M  = header[1];
30699371c9d4SSatish Balay   N  = header[2];
30709371c9d4SSatish Balay   nz = header[3];
307108401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
307208401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
307308401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
307408ea439dSMark F. Adams 
30753ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30769566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30773ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30783ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30793ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30809566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30819566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30828fb81238SShri Abhyankar 
30833ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30849566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3085aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30868fb81238SShri Abhyankar 
30873ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30889566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30899566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30909566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
30919371c9d4SSatish Balay   rowidxs[0] = 0;
30929371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
309338b83642SBarry Smith   if (nz != PETSC_MAX_INT) {
30941c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
309508401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
309638b83642SBarry Smith   }
309738b83642SBarry Smith 
30983ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
30999566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
31009566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
31019566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
31023ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
31039566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
31049566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
31059566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
31063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31078fb81238SShri Abhyankar }
31088fb81238SShri Abhyankar 
31093782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3110ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3111d71ae5a4SJacob Faibussowitsch {
31124aa3045dSJed Brown   IS          iscol_local;
3113c5e4d11fSDmitry Karpeev   PetscBool   isstride;
3114c5e4d11fSDmitry Karpeev   PetscMPIInt lisstride = 0, gisstride;
31153782ecc7SHong Zhang 
31163782ecc7SHong Zhang   PetscFunctionBegin;
31173782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31189566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31193782ecc7SHong Zhang 
3120c5e4d11fSDmitry Karpeev   if (isstride) {
3121c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31229566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31239566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31249566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
3125c5e4d11fSDmitry Karpeev     if (mstart == start && mlen - mstart == len) lisstride = 1;
3126c5e4d11fSDmitry Karpeev   }
31273782ecc7SHong Zhang 
31281c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3129c5e4d11fSDmitry Karpeev   if (gisstride) {
3130c5e4d11fSDmitry Karpeev     PetscInt N;
31319566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31329566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31339566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31349566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3135c5e4d11fSDmitry Karpeev   } else {
3136c5bfad50SMark F. Adams     PetscInt cbs;
31379566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31389566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31399566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3140b79d0421SJed Brown   }
31413782ecc7SHong Zhang 
31423782ecc7SHong Zhang   *isseq = iscol_local;
31433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3144c5e4d11fSDmitry Karpeev }
31458d2139bdSHong Zhang 
3146ddfdf956SHong Zhang /*
31479c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31489c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3149ddfdf956SHong Zhang 
3150ddfdf956SHong Zhang  Input Parameters:
315127430b45SBarry Smith +   mat - matrix
315227430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31539c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
315427430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3155ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
315627430b45SBarry Smith 
315727430b45SBarry Smith  Output Parameters:
315827430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
315927430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
316027430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
316127430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3162ddfdf956SHong Zhang  */
3163ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[])
3164d71ae5a4SJacob Faibussowitsch {
3165040216a4SHong Zhang   Vec             x, cmap;
3166040216a4SHong Zhang   const PetscInt *is_idx;
3167040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31689c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3169040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3170040216a4SHong Zhang   Mat             B    = a->B;
3171040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3172a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31738b3fa1f7SHong Zhang   MPI_Comm        comm;
31743a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31753782ecc7SHong Zhang 
31763782ecc7SHong Zhang   PetscFunctionBegin;
31779566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31789566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31798b3fa1f7SHong Zhang 
3180ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31819566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31829566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31839566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31849566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31850a351717SHong Zhang 
31869c988bcaSHong Zhang   /* Get start indices */
31879566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3188ddfdf956SHong Zhang   isstart -= ncols;
31899566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3190040216a4SHong Zhang 
31919566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
31929566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
31939566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
31949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3195ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
31968b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3197ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
31989c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
31998b3fa1f7SHong Zhang   }
32009566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
32019566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
32029566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
32038b3fa1f7SHong Zhang 
32049c988bcaSHong Zhang   /* Get iscol_d */
32059566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
32069566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
32079566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3208feb78a15SHong Zhang 
32099c988bcaSHong Zhang   /* Get isrow_d */
32109566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3211feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32139566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32149c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32159566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3216feb78a15SHong Zhang 
32179566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32189566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32199566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3220feb78a15SHong Zhang 
32219c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32229566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32239566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3224ddfdf956SHong Zhang 
32259566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
322607250d77SHong Zhang 
32279566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32289566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
322964efcef9SHong Zhang 
32309c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3231ddfdf956SHong Zhang   /* off-process column indices */
32329c988bcaSHong Zhang   count = 0;
32339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3235feb78a15SHong Zhang 
32369566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32379566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32388b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3239f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32409c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32411c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32421c645242SHong Zhang       count++;
32438b3fa1f7SHong Zhang     }
32448b3fa1f7SHong Zhang   }
32459566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32469566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
324707250d77SHong Zhang 
32489566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3249b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3250b6d9b4e0SHong Zhang 
32519566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32529c988bcaSHong Zhang   *garray = cmap1;
32539c988bcaSHong Zhang 
32549566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32559566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32569566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3258040216a4SHong Zhang }
3259040216a4SHong Zhang 
3260b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3261d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3262d71ae5a4SJacob Faibussowitsch {
3263b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32641fd43edeSHong Zhang   Mat         M = NULL;
32653b00a383SHong Zhang   MPI_Comm    comm;
3266b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32673b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3268b20e2604SHong Zhang   PetscInt    n;
32693b00a383SHong Zhang 
32703b00a383SHong Zhang   PetscFunctionBegin;
32719566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32723b00a383SHong Zhang 
32733b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3274b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32759566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
327628b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32773b00a383SHong Zhang 
32789566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
327928b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32803b00a383SHong Zhang 
32819566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
328228b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32833b00a383SHong Zhang 
3284b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3285b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32869566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32879566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
328848a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32899566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32909566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
32913b00a383SHong Zhang 
32923b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
32939c988bcaSHong Zhang     const PetscInt *garray;
3294b20e2604SHong Zhang     PetscInt        BsubN;
32953b00a383SHong Zhang 
3296b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
32979566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
32983b00a383SHong Zhang 
3299b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
33009566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
33019566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
33023b00a383SHong Zhang 
33039c988bcaSHong Zhang     /* Create submatrix M */
33049566063dSJacob Faibussowitsch     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M));
33053b00a383SHong Zhang 
3306b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3307b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33087cfce09cSHong Zhang 
33099566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3310b20e2604SHong Zhang     n = asub->B->cmap->N;
3311b20e2604SHong Zhang     if (BsubN > n) {
3312c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33137cfce09cSHong Zhang       const PetscInt *idx;
33149c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33159566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33167cfce09cSHong Zhang 
33179566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33187cfce09cSHong Zhang       j = 0;
33199566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3320b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33217cfce09cSHong Zhang         if (j >= BsubN) break;
33229c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33237cfce09cSHong Zhang 
33249c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33257cfce09cSHong Zhang           idx_new[i] = idx[j++];
332698921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33277cfce09cSHong Zhang       }
33289566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33297cfce09cSHong Zhang 
33309566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33319566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33327cfce09cSHong Zhang 
3333b20e2604SHong Zhang     } else if (BsubN < n) {
333498921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3335b20e2604SHong Zhang     }
33367cfce09cSHong Zhang 
33379566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3338b20e2604SHong Zhang     *submat = M;
33393b00a383SHong Zhang 
3340e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33419566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33429566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33433b00a383SHong Zhang 
33449566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33459566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33463b00a383SHong Zhang 
33479566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33489566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33493b00a383SHong Zhang   }
33503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33513b00a383SHong Zhang }
33523b00a383SHong Zhang 
3353d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3354d71ae5a4SJacob Faibussowitsch {
33551358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33563782ecc7SHong Zhang   PetscInt  csize;
335718e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33584a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33593782ecc7SHong Zhang   MPI_Comm  comm;
33603782ecc7SHong Zhang 
33613782ecc7SHong Zhang   PetscFunctionBegin;
3362bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3363a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33648f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33659566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3366d5761cdaSHong Zhang     if (isrow_d) {
3367d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3368d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3369d5761cdaSHong Zhang     } else {
33709566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3371d5761cdaSHong Zhang       if (iscol_local) {
3372d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3373d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3374d5761cdaSHong Zhang       }
3375d5761cdaSHong Zhang     }
33768f69fa7bSHong Zhang   } else {
3377e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
337818e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33799566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33803782ecc7SHong Zhang     if (!n) {
338118e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33823782ecc7SHong Zhang     } else {
33839566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33849566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3385ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33868f69fa7bSHong Zhang     }
33873782ecc7SHong Zhang 
3388e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
338918e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33909566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
339118e627e3SHong Zhang     if (!n) {
339218e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
339318e627e3SHong Zhang     } else {
33949566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
33959566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
339618e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
339718e627e3SHong Zhang     }
339818e627e3SHong Zhang 
33999566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
34001c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
340118e627e3SHong Zhang     sameRowDist = tsameDist[0];
340218e627e3SHong Zhang   }
340318e627e3SHong Zhang 
340418e627e3SHong Zhang   if (sameRowDist) {
3405b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
34063b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
34079566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34083ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3409b20e2604SHong Zhang     } else { /* sameRowDist */
34103b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34111358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34121358a193SHong Zhang         PetscBool sorted;
34139566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34149566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34159566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
341608401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34171358a193SHong Zhang 
34189566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34191358a193SHong Zhang         if (sorted) {
34201358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34219566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34223ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34233782ecc7SHong Zhang         }
34241358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
342548c0d076SHong Zhang         IS iscol_sub;
34269566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
342748c0d076SHong Zhang         if (iscol_sub) {
34289566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34293ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
343048c0d076SHong Zhang         }
34311358a193SHong Zhang       }
34321358a193SHong Zhang     }
34331358a193SHong Zhang   }
34343782ecc7SHong Zhang 
3435bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34363782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34379566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
343828b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34393782ecc7SHong Zhang   } else {
344048a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34411358a193SHong Zhang   }
34423782ecc7SHong Zhang 
34439566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34449566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34458f69fa7bSHong Zhang 
3446b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34479566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34489566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3449b79d0421SJed Brown   }
34503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34514aa3045dSJed Brown }
34524aa3045dSJed Brown 
3453feb78a15SHong Zhang /*@C
345411a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3455feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3456feb78a15SHong Zhang 
3457d083f849SBarry Smith   Collective
3458feb78a15SHong Zhang 
3459feb78a15SHong Zhang   Input Parameters:
3460feb78a15SHong Zhang + comm   - MPI communicator
3461feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3462b20e2604SHong Zhang . B      - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine
34632ef1f0ffSBarry Smith - garray - global index of `B` columns
3464feb78a15SHong Zhang 
3465feb78a15SHong Zhang   Output Parameter:
34662ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
346727430b45SBarry Smith 
3468feb78a15SHong Zhang   Level: advanced
3469feb78a15SHong Zhang 
3470feb78a15SHong Zhang   Notes:
347111a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
347211a5261eSBarry Smith 
34732ef1f0ffSBarry Smith   `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore.
3474feb78a15SHong Zhang 
34751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3476feb78a15SHong Zhang @*/
3477d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat)
3478d71ae5a4SJacob Faibussowitsch {
3479feb78a15SHong Zhang   Mat_MPIAIJ        *maij;
3480e489de8fSHong Zhang   Mat_SeqAIJ        *b  = (Mat_SeqAIJ *)B->data, *bnew;
3481a5348796SHong Zhang   PetscInt          *oi = b->i, *oj = b->j, i, nz, col;
3482ce496241SStefano Zampini   const PetscScalar *oa;
3483e489de8fSHong Zhang   Mat                Bnew;
3484feb78a15SHong Zhang   PetscInt           m, n, N;
34854ab4d6f4SRichard Tran Mills   MatType            mpi_mat_type;
3486feb78a15SHong Zhang 
3487feb78a15SHong Zhang   PetscFunctionBegin;
34889566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
34899566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
349008401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
349137a5e0faSPierre Jolivet   PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3492b6d9b4e0SHong Zhang   /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */
349308401ef6SPierre Jolivet   /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */
3494feb78a15SHong Zhang 
3495e489de8fSHong Zhang   /* Get global columns of mat */
34961c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm));
3497feb78a15SHong Zhang 
34989566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N));
34994ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
35004ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
35014ab4d6f4SRichard Tran Mills   PetscCall(MatSetType(*mat, mpi_mat_type));
35024ab4d6f4SRichard Tran Mills 
350337a5e0faSPierre Jolivet   if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs));
3504feb78a15SHong Zhang   maij = (Mat_MPIAIJ *)(*mat)->data;
3505feb78a15SHong Zhang 
3506feb78a15SHong Zhang   (*mat)->preallocated = PETSC_TRUE;
3507feb78a15SHong Zhang 
35089566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
35099566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
3510feb78a15SHong Zhang 
3511e489de8fSHong Zhang   /* Set A as diagonal portion of *mat */
3512feb78a15SHong Zhang   maij->A = A;
3513feb78a15SHong Zhang 
3514a5348796SHong Zhang   nz = oi[m];
3515a5348796SHong Zhang   for (i = 0; i < nz; i++) {
3516a5348796SHong Zhang     col   = oj[i];
3517a5348796SHong Zhang     oj[i] = garray[col];
3518feb78a15SHong Zhang   }
3519feb78a15SHong Zhang 
3520e489de8fSHong Zhang   /* Set Bnew as off-diagonal portion of *mat */
35219566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &oa));
35229566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew));
35239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &oa));
3524e489de8fSHong Zhang   bnew        = (Mat_SeqAIJ *)Bnew->data;
3525e489de8fSHong Zhang   bnew->maxnz = b->maxnz; /* allocated nonzeros of B */
3526e489de8fSHong Zhang   maij->B     = Bnew;
3527d5761cdaSHong Zhang 
352808401ef6SPierre Jolivet   PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N);
3529d5761cdaSHong Zhang 
3530e489de8fSHong Zhang   b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */
3531d5761cdaSHong Zhang   b->free_a       = PETSC_FALSE;
3532d5761cdaSHong Zhang   b->free_ij      = PETSC_FALSE;
35339566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&B));
3534d5761cdaSHong Zhang 
3535e489de8fSHong Zhang   bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */
3536e489de8fSHong Zhang   bnew->free_a       = PETSC_TRUE;
3537e489de8fSHong Zhang   bnew->free_ij      = PETSC_TRUE;
3538feb78a15SHong Zhang 
3539a5348796SHong Zhang   /* condense columns of maij->B */
35409566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
35419566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
35429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
35439566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
35449566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3546feb78a15SHong Zhang }
3547feb78a15SHong Zhang 
3548ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35494aa3045dSJed Brown 
3550d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3551d71ae5a4SJacob Faibussowitsch {
355298b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
355385f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
355498b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35551fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
355698b658c4SHong Zhang   MatScalar      *aa;
355700e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3558a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
355998b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
356098b658c4SHong Zhang   IS              iscol_sub, iscmap;
356198b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
356218e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3563a31a438cSHong Zhang   MPI_Comm        comm;
35647e2c5f70SBarry Smith 
3565a0ff6018SBarry Smith   PetscFunctionBegin;
35669566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3567d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35689566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
356928b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35709566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3571d5761cdaSHong Zhang 
35729566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
357328b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3574d5761cdaSHong Zhang 
35759566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
357628b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3577d5761cdaSHong Zhang 
35789566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3579d5761cdaSHong Zhang 
3580d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35813b00a383SHong Zhang     PetscBool flg;
35823b00a383SHong Zhang 
35839566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35849566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3585bcae8d28SHong Zhang 
35863b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3587366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35889566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3589366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
35901c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3591366a327dSHong Zhang     if (allcolumns) {
3592366a327dSHong Zhang       iscol_sub = iscol_local;
35939566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35949566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3595366a327dSHong Zhang 
35963b00a383SHong Zhang     } else {
35971358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3598244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35999566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
36009566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
36019566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
36028d2139bdSHong Zhang       count = 0;
3603a31a438cSHong Zhang       k     = 0;
3604a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3605a31a438cSHong Zhang         j = is_idx[i];
3606a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3607a31a438cSHong Zhang           /* diagonal part of mat */
36088d2139bdSHong Zhang           idx[count]     = j;
3609366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36104a3daf6eSHong Zhang         } else if (Bn) {
3611a31a438cSHong Zhang           /* off-diagonal part of mat */
3612a31a438cSHong Zhang           if (j == garray[k]) {
36138d2139bdSHong Zhang             idx[count]     = j;
3614a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3615a31a438cSHong Zhang           } else if (j > garray[k]) {
3616a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3617a31a438cSHong Zhang             if (j == garray[k]) {
3618a31a438cSHong Zhang               idx[count]     = j;
3619a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36208d2139bdSHong Zhang             }
36218d2139bdSHong Zhang           }
36228d2139bdSHong Zhang         }
36238d2139bdSHong Zhang       }
36249566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36258d2139bdSHong Zhang 
36269566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36279566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36289566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3629b6d9b4e0SHong Zhang 
36309566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3631a31a438cSHong Zhang     }
36328b3fa1f7SHong Zhang 
36333b00a383SHong Zhang     /* (3) Create sequential Msub */
36349566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3635d5761cdaSHong Zhang   }
36368d2139bdSHong Zhang 
36379566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
363898b658c4SHong Zhang   aij = (Mat_SeqAIJ *)(Msub)->data;
363998b658c4SHong Zhang   ii  = aij->i;
36409566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3641a0ff6018SBarry Smith 
3642a0ff6018SBarry Smith   /*
3643a0ff6018SBarry Smith       m - number of local rows
3644a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3645a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3646a0ff6018SBarry Smith   */
36479566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
364898b658c4SHong Zhang 
36493b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36503b00a383SHong Zhang     /* (4) Create parallel newmat */
365198b658c4SHong Zhang     PetscMPIInt rank, size;
3652bcae8d28SHong Zhang     PetscInt    csize;
365398b658c4SHong Zhang 
36549566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36559566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
365600e6dbe6SBarry Smith 
3657a0ff6018SBarry Smith     /*
365800e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
365900e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3660a0ff6018SBarry Smith     */
366100e6dbe6SBarry Smith 
366200e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36639566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36646a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36659566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3666a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3667e2c4fddaSBarry Smith         nlocal = m;
36686a6a5d1dSBarry Smith       } else {
3669a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3670ab50ec6bSBarry Smith       }
3671ab50ec6bSBarry Smith     } else {
36726a6a5d1dSBarry Smith       nlocal = csize;
36736a6a5d1dSBarry Smith     }
36749566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
367500e6dbe6SBarry Smith     rstart = rend - nlocal;
3676aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
367700e6dbe6SBarry Smith 
367800e6dbe6SBarry Smith     /* next, compute all the lengths */
367998b658c4SHong Zhang     jj = aij->j;
36809566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
368100e6dbe6SBarry Smith     olens = dlens + m;
368200e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
368300e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
368400e6dbe6SBarry Smith       olen = 0;
368500e6dbe6SBarry Smith       dlen = 0;
368600e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
368715b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
368800e6dbe6SBarry Smith         else dlen++;
368900e6dbe6SBarry Smith         jj++;
369000e6dbe6SBarry Smith       }
369100e6dbe6SBarry Smith       olens[i] = olen;
369200e6dbe6SBarry Smith       dlens[i] = dlen;
369300e6dbe6SBarry Smith     }
3694b6d9b4e0SHong Zhang 
36959566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36969566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
369798b658c4SHong Zhang 
36989566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36999566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
37009566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
37019566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
37029566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
37039566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3704d5761cdaSHong Zhang 
3705d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3706a0ff6018SBarry Smith     M = *newmat;
37079566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
370808401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
37099566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3710c48de900SBarry Smith     /*
3711c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3712c48de900SBarry Smith        rather than the slower MatSetValues().
3713c48de900SBarry Smith     */
3714c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3715c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3716a0ff6018SBarry Smith   }
3717548ecf4dSHong Zhang 
37183b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37209566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
372198b658c4SHong Zhang 
372298b658c4SHong Zhang   jj = aij->j;
37239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3724a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3725a0ff6018SBarry Smith     row = rstart + i;
372600e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
372715b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37289566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37299371c9d4SSatish Balay     jj += nz;
37309371c9d4SSatish Balay     aa += nz;
3731a0ff6018SBarry Smith   }
37329566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37339566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3734a0ff6018SBarry Smith 
37359566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3737fee21e36SBarry Smith 
37389566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
373998b658c4SHong Zhang 
374098b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3741fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37423b00a383SHong Zhang     *newmat = M;
37439566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubMatrix", (PetscObject)Msub));
37449566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
374598b658c4SHong Zhang 
37469566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubIScol", (PetscObject)iscol_sub));
37479566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
374898b658c4SHong Zhang 
37499566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)(*newmat), "Subcmap", (PetscObject)iscmap));
37509566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3751bcae8d28SHong Zhang 
3752bcae8d28SHong Zhang     if (iscol_local) {
37539566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)(*newmat), "ISAllGather", (PetscObject)iscol_local));
37549566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3755bcae8d28SHong Zhang     }
375698b658c4SHong Zhang   }
37573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3758a0ff6018SBarry Smith }
3759273d9f13SBarry Smith 
3760df40acb1SHong Zhang /*
3761df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3762df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3763df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3764df40acb1SHong Zhang 
376511a5261eSBarry Smith   This requires a sequential iscol with all indices.
3766df40acb1SHong Zhang */
3767d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3768d71ae5a4SJacob Faibussowitsch {
3769df40acb1SHong Zhang   PetscMPIInt rank, size;
3770df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3771df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3772df40acb1SHong Zhang   Mat         M, Mreuse;
377398b658c4SHong Zhang   MatScalar  *aa, *vwork;
3774df40acb1SHong Zhang   MPI_Comm    comm;
3775df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37760b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3777df40acb1SHong Zhang 
3778df40acb1SHong Zhang   PetscFunctionBegin;
37799566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37809566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37819566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3782df40acb1SHong Zhang 
37830b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37849566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37859566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37860b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
37871c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37880b27a90eSHong Zhang 
3789df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37909566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
379128b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37929566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3793df40acb1SHong Zhang   } else {
37949566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3795df40acb1SHong Zhang   }
3796df40acb1SHong Zhang 
3797df40acb1SHong Zhang   /*
3798df40acb1SHong Zhang       m - number of local rows
3799df40acb1SHong Zhang       n - number of columns (same on all processors)
3800df40acb1SHong Zhang       rstart - first row in new global matrix generated
3801df40acb1SHong Zhang   */
38029566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
38039566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3804df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
3805df40acb1SHong Zhang     aij = (Mat_SeqAIJ *)(Mreuse)->data;
3806df40acb1SHong Zhang     ii  = aij->i;
3807df40acb1SHong Zhang     jj  = aij->j;
3808df40acb1SHong Zhang 
3809df40acb1SHong Zhang     /*
3810df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3811df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3812df40acb1SHong Zhang     */
3813df40acb1SHong Zhang 
3814df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3815df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38169566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3817df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3818df40acb1SHong Zhang         nlocal = m;
3819df40acb1SHong Zhang       } else {
3820df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3821df40acb1SHong Zhang       }
3822df40acb1SHong Zhang     } else {
3823df40acb1SHong Zhang       nlocal = csize;
3824df40acb1SHong Zhang     }
38259566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3826df40acb1SHong Zhang     rstart = rend - nlocal;
3827aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3828df40acb1SHong Zhang 
3829df40acb1SHong Zhang     /* next, compute all the lengths */
38309566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3831df40acb1SHong Zhang     olens = dlens + m;
3832df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3833df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3834df40acb1SHong Zhang       olen = 0;
3835df40acb1SHong Zhang       dlen = 0;
3836df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3837df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3838df40acb1SHong Zhang         else dlen++;
3839df40acb1SHong Zhang         jj++;
3840df40acb1SHong Zhang       }
3841df40acb1SHong Zhang       olens[i] = olen;
3842df40acb1SHong Zhang       dlens[i] = dlen;
3843df40acb1SHong Zhang     }
38449566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38459566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38469566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38479566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38489566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38499566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3850df40acb1SHong Zhang   } else {
3851df40acb1SHong Zhang     PetscInt ml, nl;
3852df40acb1SHong Zhang 
3853df40acb1SHong Zhang     M = *newmat;
38549566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
385508401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38569566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3857df40acb1SHong Zhang     /*
3858df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3859df40acb1SHong Zhang        rather than the slower MatSetValues().
3860df40acb1SHong Zhang     */
3861df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3862df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3863df40acb1SHong Zhang   }
38649566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
3865df40acb1SHong Zhang   aij = (Mat_SeqAIJ *)(Mreuse)->data;
3866df40acb1SHong Zhang   ii  = aij->i;
3867df40acb1SHong Zhang   jj  = aij->j;
38682e5835c6SStefano Zampini 
38692e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38709566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3871df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3872df40acb1SHong Zhang     row   = rstart + i;
3873df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38749371c9d4SSatish Balay     cwork = jj;
38758e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38769371c9d4SSatish Balay     vwork = aa;
38778e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38789566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3879df40acb1SHong Zhang   }
38809566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3881df40acb1SHong Zhang 
38829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38839566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3884df40acb1SHong Zhang   *newmat = M;
3885df40acb1SHong Zhang 
3886df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3887df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38889566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38899566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3890df40acb1SHong Zhang   }
38913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3892df40acb1SHong Zhang }
3893df40acb1SHong Zhang 
3894ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3895d71ae5a4SJacob Faibussowitsch {
38966a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
3897899cda47SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii;
3898ccd8e176SBarry Smith   const PetscInt *JJ;
3899eeb24464SBarry Smith   PetscBool       nooffprocentries;
39006a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3901ccd8e176SBarry Smith 
3902ccd8e176SBarry Smith   PetscFunctionBegin;
3903aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]);
3904899cda47SBarry Smith 
39059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
39069566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3907d0f46423SBarry Smith   m      = B->rmap->n;
3908d0f46423SBarry Smith   cstart = B->cmap->rstart;
3909d0f46423SBarry Smith   cend   = B->cmap->rend;
3910d0f46423SBarry Smith   rstart = B->rmap->rstart;
3911899cda47SBarry Smith 
39129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3913ccd8e176SBarry Smith 
391476bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39158f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3916ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39178e3a54c0SPierre Jolivet       JJ  = PetscSafePointerPlusOffset(J, Ii[i]);
391808401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
391908401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
392008401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3921ecc77c7aSBarry Smith     }
392276bd3646SJed Brown   }
3923ecc77c7aSBarry Smith 
39248f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3925b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39268e3a54c0SPierre Jolivet     JJ      = PetscSafePointerPlusOffset(J, Ii[i]);
3927ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3928ccd8e176SBarry Smith     d       = 0;
39290daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39300daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3931ccd8e176SBarry Smith     }
3932ccd8e176SBarry Smith     d_nnz[i] = d;
3933ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3934ccd8e176SBarry Smith   }
39359566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39369566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3937ccd8e176SBarry Smith 
39388f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3939ccd8e176SBarry Smith     ii = i + rstart;
39408e3a54c0SPierre Jolivet     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES));
3941ccd8e176SBarry Smith   }
3942eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3943eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39449566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39459566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3946eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3947ccd8e176SBarry Smith 
39486a3d2595SBarry Smith   /* count number of entries below block diagonal */
39496a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39506a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39516a3d2595SBarry Smith   Aij->ld = ld;
39526a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39536a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39546a3d2595SBarry Smith     j   = 0;
3955ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39566a3d2595SBarry Smith     ld[i] = j;
3957720a2405SPierre Jolivet     if (J) J += nnz;
39586a3d2595SBarry Smith   }
39596a3d2595SBarry Smith 
39609566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3962ccd8e176SBarry Smith }
3963ccd8e176SBarry Smith 
39641eea217eSSatish Balay /*@
396511a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3966ccd8e176SBarry Smith   (the default parallel PETSc format).
3967ccd8e176SBarry Smith 
3968d083f849SBarry Smith   Collective
3969ccd8e176SBarry Smith 
3970ccd8e176SBarry Smith   Input Parameters:
3971a1661176SMatthew Knepley + B - the matrix
3972*d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
3973*d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
3974ccd8e176SBarry Smith - v - optional values in the matrix
3975ccd8e176SBarry Smith 
3976ccd8e176SBarry Smith   Level: developer
3977ccd8e176SBarry Smith 
397812251496SSatish Balay   Notes:
39792ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39802ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
398111a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
398212251496SSatish Balay 
39832ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
398412251496SSatish Balay 
3985a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3986a4bd8bc0SBarry Smith 
3987a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3988a4bd8bc0SBarry Smith 
3989a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3990a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3991a4bd8bc0SBarry Smith 
399212251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
399312251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3994c5e4d11fSDmitry Karpeev   as shown
399527430b45SBarry Smith .vb
399627430b45SBarry Smith         1 0 0
399727430b45SBarry Smith         2 0 3     P0
399827430b45SBarry Smith        -------
399927430b45SBarry Smith         4 5 6     P1
400027430b45SBarry Smith 
400127430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
400227430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
400327430b45SBarry Smith         j =  {0,0,2}  [size = 3]
400427430b45SBarry Smith         v =  {1,2,3}  [size = 3]
400527430b45SBarry Smith 
400627430b45SBarry Smith      Process1 [P1] rows_owned=[2]
400727430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
400827430b45SBarry Smith         j =  {0,1,2}  [size = 3]
400927430b45SBarry Smith         v =  {4,5,6}  [size = 3]
401027430b45SBarry Smith .ve
401112251496SSatish Balay 
4012fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4013a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4014ccd8e176SBarry Smith @*/
4015d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4016d71ae5a4SJacob Faibussowitsch {
4017ccd8e176SBarry Smith   PetscFunctionBegin;
4018cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4020ccd8e176SBarry Smith }
4021ccd8e176SBarry Smith 
4022273d9f13SBarry Smith /*@C
402311a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4024273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4025273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
402620f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4027273d9f13SBarry Smith 
4028d083f849SBarry Smith   Collective
4029273d9f13SBarry Smith 
4030273d9f13SBarry Smith   Input Parameters:
40311c4f3114SJed Brown + B     - the matrix
4032273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4033273d9f13SBarry Smith            (same value is used for all local rows)
4034273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4035273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40362ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4037273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40383287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40393287b5eaSJed Brown            the diagonal entry even if it is zero.
4040273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4041273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4042273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4043273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40442ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4045273d9f13SBarry Smith            structure. The size of this array is equal to the number
4046273d9f13SBarry Smith            of local rows, i.e 'm'.
4047273d9f13SBarry Smith 
40482920cce0SJacob Faibussowitsch   Example Usage:
404927430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
405027430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
405127430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
405227430b45SBarry Smith   as follows
405327430b45SBarry Smith 
405427430b45SBarry Smith .vb
405527430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
405627430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
405727430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
405827430b45SBarry Smith     -------------------------------------
405927430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
406027430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
406127430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
406227430b45SBarry Smith     -------------------------------------
406327430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
406427430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
406527430b45SBarry Smith .ve
406627430b45SBarry Smith 
406727430b45SBarry Smith   This can be represented as a collection of submatrices as
406827430b45SBarry Smith .vb
406927430b45SBarry Smith       A B C
407027430b45SBarry Smith       D E F
407127430b45SBarry Smith       G H I
407227430b45SBarry Smith .ve
407327430b45SBarry Smith 
407427430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
407527430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
407627430b45SBarry Smith 
407727430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407827430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407927430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
408027430b45SBarry Smith 
408127430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
408227430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
408327430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
408427430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
408527430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
408627430b45SBarry Smith   matrix, ans [DF] as another `MATSEQAIJ` matrix.
408727430b45SBarry Smith 
408820f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
408920f4b53cSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
409027430b45SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
409120f4b53cSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
409227430b45SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
409320f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
409427430b45SBarry Smith .vb
409527430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
409627430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
409727430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
409827430b45SBarry Smith .ve
409920f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
410027430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
410127430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
410227430b45SBarry Smith   34 values.
410327430b45SBarry Smith 
410420f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
410527430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
410620f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
410727430b45SBarry Smith .vb
410827430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
410927430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
411027430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
411127430b45SBarry Smith .ve
411227430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
411327430b45SBarry Smith   hence pre-allocation is perfect.
411427430b45SBarry Smith 
411527430b45SBarry Smith   Level: intermediate
411627430b45SBarry Smith 
411727430b45SBarry Smith   Notes:
411849a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
411949a6f317SBarry Smith 
412027430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41210598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4122651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4123273d9f13SBarry Smith 
4124273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4125273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4126273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4127273d9f13SBarry Smith 
4128273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4129a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4130a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4131a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4132a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4133a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4134a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4135a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4136a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4137273d9f13SBarry Smith 
41382ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4139273d9f13SBarry Smith 
414027430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4141aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
414227430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4143aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4144aa95bbe8SBarry Smith 
41451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4146a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4147273d9f13SBarry Smith @*/
4148d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4149d71ae5a4SJacob Faibussowitsch {
4150273d9f13SBarry Smith   PetscFunctionBegin;
41516ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41526ba663aaSJed Brown   PetscValidType(B, 1);
4153cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4155273d9f13SBarry Smith }
4156273d9f13SBarry Smith 
415758d36128SBarry Smith /*@
415811a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41598f8f2f0dSBarry Smith   CSR format for the local rows.
41602fb0ec9aSBarry Smith 
4161d083f849SBarry Smith   Collective
41622fb0ec9aSBarry Smith 
41632fb0ec9aSBarry Smith   Input Parameters:
41642fb0ec9aSBarry Smith + comm - MPI communicator
416511a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41662fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4167*d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4168*d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4169*d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4170*d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41715693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41725693b835SJunchao Zhang . j    - global column indices
4173f1f2ae84SBarry Smith - a    - optional matrix values
41742fb0ec9aSBarry Smith 
41752fb0ec9aSBarry Smith   Output Parameter:
41762fb0ec9aSBarry Smith . mat - the matrix
417703bfb495SBarry Smith 
41782fb0ec9aSBarry Smith   Level: intermediate
41792fb0ec9aSBarry Smith 
41802fb0ec9aSBarry Smith   Notes:
41812ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
41822fb0ec9aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
41835693b835SJunchao Zhang   called this routine. Use `MatCreateMPIAIJWithSplitArray()` to avoid needing to copy the arrays.
41842fb0ec9aSBarry Smith 
41852ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
418612251496SSatish Balay 
41875693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4188a4bd8bc0SBarry Smith 
41895693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4190a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4191a4bd8bc0SBarry Smith 
419212251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
419312251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
4194c5e4d11fSDmitry Karpeev   as shown
41952ef1f0ffSBarry Smith .vb
41962ef1f0ffSBarry Smith         1 0 0
41972ef1f0ffSBarry Smith         2 0 3     P0
41982ef1f0ffSBarry Smith        -------
41992ef1f0ffSBarry Smith         4 5 6     P1
42008f8f2f0dSBarry Smith 
42012ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
42022ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
42032ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
42042ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
42052fb0ec9aSBarry Smith 
42062ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
42072ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
42082ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
42092ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
42102ef1f0ffSBarry Smith .ve
42112ef1f0ffSBarry Smith 
42121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIK`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
42135693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42142fb0ec9aSBarry Smith @*/
4215d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4216d71ae5a4SJacob Faibussowitsch {
42172fb0ec9aSBarry Smith   PetscFunctionBegin;
421808401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
421908401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42209566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42219566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42229566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42239566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42249566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42262fb0ec9aSBarry Smith }
42272fb0ec9aSBarry Smith 
42288f8f2f0dSBarry Smith /*@
422911a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42302ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42312ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42326a3d2595SBarry Smith 
42336a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42348f8f2f0dSBarry Smith 
42358f8f2f0dSBarry Smith   Collective
42368f8f2f0dSBarry Smith 
42378f8f2f0dSBarry Smith   Input Parameters:
42388f8f2f0dSBarry Smith + mat - the matrix
423911a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42408f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
424111a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42428f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
424311a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
424411a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42458f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42468f8f2f0dSBarry Smith . J   - column indices
42478f8f2f0dSBarry Smith - v   - matrix values
42488f8f2f0dSBarry Smith 
42492ef1f0ffSBarry Smith   Level: deprecated
42508f8f2f0dSBarry Smith 
42511cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4252a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42538f8f2f0dSBarry Smith @*/
4254d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4255d71ae5a4SJacob Faibussowitsch {
42566a3d2595SBarry Smith   PetscInt        nnz, i;
42578f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42588f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4259fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4260fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42618f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42626a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42636a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42648f8f2f0dSBarry Smith 
42658f8f2f0dSBarry Smith   PetscFunctionBegin;
4266aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
426708401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
426808401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
426908401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42708f8f2f0dSBarry Smith 
42719566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42729566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42738f8f2f0dSBarry Smith 
42748f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42754c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42764c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42774c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42784c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42794c17f1ccSBarry Smith       }
42804c17f1ccSBarry Smith     }
42818f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42828f8f2f0dSBarry Smith     Iii = Ii[i];
42838f8f2f0dSBarry Smith     ldi = ld[i];
42848f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42859566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42869566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42879566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42888f8f2f0dSBarry Smith     ad += md;
42898f8f2f0dSBarry Smith     ao += nnz - md;
42908f8f2f0dSBarry Smith   }
42918f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42928f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42959566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42969566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42979566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42989566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42999566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43008f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
43013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43028f8f2f0dSBarry Smith }
43038f8f2f0dSBarry Smith 
43046a3d2595SBarry Smith /*@
430511a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
43066a3d2595SBarry Smith 
43076a3d2595SBarry Smith   Collective
43086a3d2595SBarry Smith 
43096a3d2595SBarry Smith   Input Parameters:
43106a3d2595SBarry Smith + mat - the matrix
43116a3d2595SBarry Smith - v   - matrix values, stored by row
43126a3d2595SBarry Smith 
43136a3d2595SBarry Smith   Level: intermediate
43146a3d2595SBarry Smith 
4315a4bd8bc0SBarry Smith   Notes:
43166a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43176a3d2595SBarry Smith 
4318a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4319a4bd8bc0SBarry Smith 
43201cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4321a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43226a3d2595SBarry Smith @*/
4323d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4324d71ae5a4SJacob Faibussowitsch {
43256a3d2595SBarry Smith   PetscInt        nnz, i, m;
43266a3d2595SBarry Smith   PetscBool       nooffprocentries;
43276a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43286a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43296a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43306a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43316a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43326a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43336a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43346a3d2595SBarry Smith 
43356a3d2595SBarry Smith   PetscFunctionBegin;
43366a3d2595SBarry Smith   m = mat->rmap->n;
43376a3d2595SBarry Smith 
43386a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43396a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43406a3d2595SBarry Smith   Iii = 0;
43416a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43426a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43436a3d2595SBarry Smith     ldi = ld[i];
43446a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43456a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43466a3d2595SBarry Smith     ad += md;
4347810441c8SPierre Jolivet     if (ao) {
4348810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4349810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43506a3d2595SBarry Smith       ao += nnz - md;
4351810441c8SPierre Jolivet     }
43526a3d2595SBarry Smith     Iii += nnz;
43536a3d2595SBarry Smith   }
43546a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43556a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43566a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43576a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43586a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43596a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43606a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43616a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43626a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43636a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43656a3d2595SBarry Smith }
43666a3d2595SBarry Smith 
4367273d9f13SBarry Smith /*@C
436811a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4369273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4370273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43712ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4372273d9f13SBarry Smith 
4373d083f849SBarry Smith   Collective
4374273d9f13SBarry Smith 
4375273d9f13SBarry Smith   Input Parameters:
4376273d9f13SBarry Smith + comm  - MPI communicator
437711a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4378273d9f13SBarry Smith            This value should be the same as the local size used in creating the
4379273d9f13SBarry Smith            y vector for the matrix-vector product y = Ax.
4380273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
438145f401ebSJose E. Roman        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4382273d9f13SBarry Smith        calculated if N is given) For square matrices n is almost always m.
438311a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
438411a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4385273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4386273d9f13SBarry Smith            (same value is used for all local rows)
4387273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4388273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
43892ef1f0ffSBarry Smith            or `NULL`, if `d_nz` is used to specify the nonzero structure.
4390273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
4391273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4392273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4393273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4394273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
43952ef1f0ffSBarry Smith            each row) or `NULL`, if `o_nz` is used to specify the nonzero
4396273d9f13SBarry Smith            structure. The size of this array is equal to the number
4397273d9f13SBarry Smith            of local rows, i.e 'm'.
4398273d9f13SBarry Smith 
4399273d9f13SBarry Smith   Output Parameter:
4400273d9f13SBarry Smith . A - the matrix
4401273d9f13SBarry Smith 
440227430b45SBarry Smith   Options Database Keys:
440327430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
440427430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
440527430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
440627430b45SBarry Smith         See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the vecscatter be viewed as a matrix.
440727430b45SBarry Smith         Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
440827430b45SBarry Smith 
44092ef1f0ffSBarry Smith   Level: intermediate
44102ef1f0ffSBarry Smith 
441127430b45SBarry Smith   Notes:
441277433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4413f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
441411a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4415175b88e8SBarry Smith 
441649a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
441749a6f317SBarry Smith 
44182ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44192ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4420273d9f13SBarry Smith   storage requirements for this matrix.
4421273d9f13SBarry Smith 
442211a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4423273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4424273d9f13SBarry Smith   that argument.
4425273d9f13SBarry Smith 
4426273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4427273d9f13SBarry Smith   (possibly both).
4428273d9f13SBarry Smith 
442933a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
443033a7c187SSatish Balay   first m0 rows belong to process 0, the next m1 rows belong to
443133a7c187SSatish Balay   process 1, the next m2 rows belong to process 2 etc.. where
443233a7c187SSatish Balay   m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores
443333a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4434273d9f13SBarry Smith 
443533a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
443633a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4437df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
443833a7c187SSatish Balay 
443933a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
444033a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
444133a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
444233a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
444333a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
444433a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
444533a7c187SSatish Balay   illustrates this concept.
444633a7c187SSatish Balay 
444733a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
444833a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
444933a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
445033a7c187SSatish Balay   local matrix (a rectangular submatrix).
4451273d9f13SBarry Smith 
44522ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4453273d9f13SBarry Smith 
445497d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44552ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4456da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4457da57b5cdSKarl Rupp .vb
44582ef1f0ffSBarry Smith   MatCreate(..., &A);
44592ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44602ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44612ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4462da57b5cdSKarl Rupp .ve
446397d05335SKris Buschelman 
4464273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4465273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4466273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4467273d9f13SBarry Smith 
44682920cce0SJacob Faibussowitsch   Example Usage:
4469273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4470273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4471273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4472efc377ccSKarl Rupp   as follows
4473273d9f13SBarry Smith 
4474273d9f13SBarry Smith .vb
4475273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4476273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4477273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4478273d9f13SBarry Smith     -------------------------------------
4479273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4480273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4481273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4482273d9f13SBarry Smith     -------------------------------------
4483273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4484273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4485273d9f13SBarry Smith .ve
4486273d9f13SBarry Smith 
4487da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4488273d9f13SBarry Smith 
4489273d9f13SBarry Smith .vb
4490273d9f13SBarry Smith       A B C
4491273d9f13SBarry Smith       D E F
4492273d9f13SBarry Smith       G H I
4493273d9f13SBarry Smith .ve
4494273d9f13SBarry Smith 
4495273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4496273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4497273d9f13SBarry Smith 
4498273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4499273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4500273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4501273d9f13SBarry Smith 
4502273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4503273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4504273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4505273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
450627430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
4507273d9f13SBarry Smith   matrix, ans [DF] as another SeqAIJ matrix.
4508273d9f13SBarry Smith 
45092ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45102ef1f0ffSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
4511273d9f13SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
45122ef1f0ffSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
4513273d9f13SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45142ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4515273d9f13SBarry Smith .vb
451627430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
451727430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
451827430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4519273d9f13SBarry Smith .ve
45202ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4521273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4522273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4523273d9f13SBarry Smith   34 values.
4524273d9f13SBarry Smith 
45252ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4526a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4527da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4528273d9f13SBarry Smith .vb
452927430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
453027430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
453127430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4532273d9f13SBarry Smith .ve
4533273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4534273d9f13SBarry Smith   hence pre-allocation is perfect.
4535273d9f13SBarry Smith 
45361cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4537db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`
4538273d9f13SBarry Smith @*/
4539d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4540d71ae5a4SJacob Faibussowitsch {
4541b1d57f15SBarry Smith   PetscMPIInt size;
4542273d9f13SBarry Smith 
4543273d9f13SBarry Smith   PetscFunctionBegin;
45449566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45459566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45469566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4547273d9f13SBarry Smith   if (size > 1) {
45489566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45499566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4550273d9f13SBarry Smith   } else {
45519566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45529566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4553273d9f13SBarry Smith   }
45543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4555273d9f13SBarry Smith }
4556195d93cdSBarry Smith 
45570b98dbb4SBarry Smith /*MC
45580b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix
45590b98dbb4SBarry Smith 
45600b98dbb4SBarry Smith     Synopsis:
45610b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45620b98dbb4SBarry Smith 
45630b98dbb4SBarry Smith     Not Collective
45640b98dbb4SBarry Smith 
45650b98dbb4SBarry Smith     Input Parameter:
45660b98dbb4SBarry Smith .   A - the `MATMPIAIJ` matrix
45670b98dbb4SBarry Smith 
45680b98dbb4SBarry Smith     Output Parameters:
45690b98dbb4SBarry Smith +   Ad - the diagonal portion of the matrix
45704cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45712ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45720b98dbb4SBarry Smith -   ierr - error code
45730b98dbb4SBarry Smith 
45740b98dbb4SBarry Smith      Level: advanced
45750b98dbb4SBarry Smith 
45760b98dbb4SBarry Smith     Note:
45770b98dbb4SBarry Smith     Use  `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45780b98dbb4SBarry Smith 
45791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()`
45800b98dbb4SBarry Smith M*/
45810b98dbb4SBarry Smith 
45820b98dbb4SBarry Smith /*MC
45830b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45840b98dbb4SBarry Smith 
45850b98dbb4SBarry Smith     Synopsis:
45860b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45870b98dbb4SBarry Smith 
45880b98dbb4SBarry Smith     Not Collective
45890b98dbb4SBarry Smith 
45900b98dbb4SBarry Smith     Input Parameters:
45910b98dbb4SBarry Smith +   A - the `MATMPIAIJ` matrix
45920b98dbb4SBarry Smith .   Ad - the diagonal portion of the matrix
45934cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45942ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45950b98dbb4SBarry Smith -   ierr - error code
45960b98dbb4SBarry Smith 
45970b98dbb4SBarry Smith      Level: advanced
45980b98dbb4SBarry Smith 
45991cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()`
46000b98dbb4SBarry Smith M*/
46010b98dbb4SBarry Smith 
4602127ca0efSMatthew Knepley /*@C
46030ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4604127ca0efSMatthew Knepley 
46052ef1f0ffSBarry Smith   Not Collective
4606127ca0efSMatthew Knepley 
4607127ca0efSMatthew Knepley   Input Parameter:
460811a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4609127ca0efSMatthew Knepley 
4610127ca0efSMatthew Knepley   Output Parameters:
461111a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
461211a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
46132ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4614127ca0efSMatthew Knepley 
46150ab4885dSBarry Smith   Level: intermediate
46160ab4885dSBarry Smith 
461711a5261eSBarry Smith   Note:
46182ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
46192ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
46202ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4621127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4622127ca0efSMatthew Knepley 
4623fe59aa6dSJacob Faibussowitsch   Fortran Notes:
46240ab4885dSBarry Smith   `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()`
4625127ca0efSMatthew Knepley 
4626fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4627127ca0efSMatthew Knepley @*/
4628d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4629d71ae5a4SJacob Faibussowitsch {
4630195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
463104cf37c7SBarry Smith   PetscBool   flg;
4632b1d57f15SBarry Smith 
4633195d93cdSBarry Smith   PetscFunctionBegin;
46349566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
463528b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
463621e72a00SBarry Smith   if (Ad) *Ad = a->A;
463721e72a00SBarry Smith   if (Ao) *Ao = a->B;
463821e72a00SBarry Smith   if (colmap) *colmap = a->garray;
46393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4640195d93cdSBarry Smith }
4641a2243be0SBarry Smith 
4642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4643d71ae5a4SJacob Faibussowitsch {
4644110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
46459b8102ccSHong Zhang   PetscInt    *indx;
4646110bb6e1SHong Zhang   PetscScalar *values;
4647421ddf4dSJunchao Zhang   MatType      rootType;
46489b8102ccSHong Zhang 
46499b8102ccSHong Zhang   PetscFunctionBegin;
46509566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4651110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4652110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4653110bb6e1SHong Zhang 
465448a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4655a22543b6SHong Zhang     /* Check sum(n) = N */
46561c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
465708401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4658a22543b6SHong Zhang 
46599566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46609b8102ccSHong Zhang     rstart -= m;
46619b8102ccSHong Zhang 
4662d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46639b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46649566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46659566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46669566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46679b8102ccSHong Zhang     }
46689b8102ccSHong Zhang 
46699566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46709566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46719566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46729566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46739566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46749566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46759566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46769566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4677d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46789566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46799b8102ccSHong Zhang   }
46809b8102ccSHong Zhang 
4681110bb6e1SHong Zhang   /* numeric phase */
46829566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46839b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46849566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46859b8102ccSHong Zhang     Ii = i + rstart;
46869566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46879566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46889b8102ccSHong Zhang   }
46899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4692c5d6d63eSBarry Smith }
4693c5d6d63eSBarry Smith 
4694d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data)
4695d71ae5a4SJacob Faibussowitsch {
46966718818eSStefano Zampini   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data;
469751a7d1a8SHong Zhang 
469851a7d1a8SHong Zhang   PetscFunctionBegin;
46993ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
47009566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
47019566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
47029566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
47039566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
47049566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
47059566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
47069566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
47079566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
47089566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
47099566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
47109566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
47119566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
47129566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
47139566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
47143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
471551a7d1a8SHong Zhang }
471651a7d1a8SHong Zhang 
4717c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4718c6db04a5SJed Brown #include <petscbt.h>
47194ebed01fSBarry Smith 
4720d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4721d71ae5a4SJacob Faibussowitsch {
4722ce94432eSBarry Smith   MPI_Comm             comm;
472355d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4724b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
4725a2ea699eSBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj;
4726b1d57f15SBarry Smith   PetscInt             proc, m;
4727b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
4728b1d57f15SBarry Smith   PetscInt             k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4729b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
473055d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
473155d1abb9SHong Zhang   MPI_Status          *status;
4732fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4733dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
473455d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4735776b82aeSLisandro Dalcin   PetscContainer       container;
473655d1abb9SHong Zhang 
473755d1abb9SHong Zhang   PetscFunctionBegin;
47389566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
47399566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
47403c2c1871SHong Zhang 
47419566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47429566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
474355d1abb9SHong Zhang 
47449566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
474528b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
47469566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
47479566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4748fff043a9SJunchao Zhang   aa = a_a;
4749bf0cc555SLisandro Dalcin 
475055d1abb9SHong Zhang   bi     = merge->bi;
475155d1abb9SHong Zhang   bj     = merge->bj;
475255d1abb9SHong Zhang   buf_ri = merge->buf_ri;
475355d1abb9SHong Zhang   buf_rj = merge->buf_rj;
475455d1abb9SHong Zhang 
47559566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47567a2fc3feSBarry Smith   owners = merge->rowmap->range;
475755d1abb9SHong Zhang   len_s  = merge->len_s;
475855d1abb9SHong Zhang 
475955d1abb9SHong Zhang   /* send and recv matrix values */
47609566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47619566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
476255d1abb9SHong Zhang 
47639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
476455d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
476555d1abb9SHong Zhang     if (!len_s[proc]) continue;
476655d1abb9SHong Zhang     i = owners[proc];
47679566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
476855d1abb9SHong Zhang     k++;
476955d1abb9SHong Zhang   }
477055d1abb9SHong Zhang 
47719566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47729566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47739566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
477455d1abb9SHong Zhang 
47759566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47769566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
477755d1abb9SHong Zhang 
477855d1abb9SHong Zhang   /* insert mat values of mpimat */
47799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
478155d1abb9SHong Zhang 
478255d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
478355d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
478455d1abb9SHong Zhang     nrows       = *(buf_ri_k[k]);
478555d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4786a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
478755d1abb9SHong Zhang   }
478855d1abb9SHong Zhang 
478955d1abb9SHong Zhang   /* set values of ba */
47907a2fc3feSBarry Smith   m = merge->rowmap->n;
479155d1abb9SHong Zhang   for (i = 0; i < m; i++) {
479255d1abb9SHong Zhang     arow = owners[rank] + i;
479355d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
479455d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47959566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
479655d1abb9SHong Zhang 
479755d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
479855d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
479955d1abb9SHong Zhang     aj     = a->j + ai[arow];
4800fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
480155d1abb9SHong Zhang     nextaj = 0;
480255d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
480355d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
480455d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
480555d1abb9SHong Zhang       }
480655d1abb9SHong Zhang     }
480755d1abb9SHong Zhang 
480855d1abb9SHong Zhang     /* add received vals into ba */
480955d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
481055d1abb9SHong Zhang       /* i-th row */
481155d1abb9SHong Zhang       if (i == *nextrow[k]) {
481255d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
481355d1abb9SHong Zhang         aj     = buf_rj[k] + *(nextai[k]);
481455d1abb9SHong Zhang         aa     = abuf_r[k] + *(nextai[k]);
481555d1abb9SHong Zhang         nextaj = 0;
481655d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
481755d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
481855d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
481955d1abb9SHong Zhang           }
482055d1abb9SHong Zhang         }
48219371c9d4SSatish Balay         nextrow[k]++;
48229371c9d4SSatish Balay         nextai[k]++;
482355d1abb9SHong Zhang       }
482455d1abb9SHong Zhang     }
48259566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
482655d1abb9SHong Zhang   }
48279566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
48289566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
48299566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
483055d1abb9SHong Zhang 
48319566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
48329566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
48339566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
48349566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
48359566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
48363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
483755d1abb9SHong Zhang }
483838f152feSBarry Smith 
4839d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4840d71ae5a4SJacob Faibussowitsch {
484155a3bba9SHong Zhang   Mat                  B_mpi;
4842c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4843b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4844b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4845d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
4846a2f3521dSMark F. Adams   PetscInt             len, proc, *dnz, *onz, bs, cbs;
4847c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4848b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
484955d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
485058cb9c82SHong Zhang   MPI_Status          *status;
48510298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4852be0fcf8dSHong Zhang   PetscBT              lnkbt;
485351a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4854776b82aeSLisandro Dalcin   PetscContainer       container;
485502c68681SHong Zhang 
4856e5f2cdd8SHong Zhang   PetscFunctionBegin;
48579566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48583c2c1871SHong Zhang 
485938f152feSBarry Smith   /* make sure it is a PETSc comm */
48609566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48619566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
486355d1abb9SHong Zhang 
48649566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4866e5f2cdd8SHong Zhang 
48676abd8857SHong Zhang   /* determine row ownership */
48689566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48699566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48709566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48719566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
487555d1abb9SHong Zhang 
48767a2fc3feSBarry Smith   m      = merge->rowmap->n;
48777a2fc3feSBarry Smith   owners = merge->rowmap->range;
48786abd8857SHong Zhang 
48796abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48803e06a4e6SHong Zhang   len_s = merge->len_s;
488151a7d1a8SHong Zhang 
48822257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4883c2234fe3SHong Zhang   merge->nsend = 0;
4884409913e3SHong Zhang   for (proc = 0; proc < size; proc++) {
48852257cef7SHong Zhang     len_si[proc] = 0;
48863e06a4e6SHong Zhang     if (proc == rank) {
48876abd8857SHong Zhang       len_s[proc] = 0;
48883e06a4e6SHong Zhang     } else {
488902c68681SHong Zhang       len_si[proc] = owners[proc + 1] - owners[proc] + 1;
48903e06a4e6SHong Zhang       len_s[proc]  = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */
48913e06a4e6SHong Zhang     }
48923e06a4e6SHong Zhang     if (len_s[proc]) {
4893c2234fe3SHong Zhang       merge->nsend++;
48942257cef7SHong Zhang       nrows = 0;
48952257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48962257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48972257cef7SHong Zhang       }
48982257cef7SHong Zhang       len_si[proc] = 2 * (nrows + 1);
48992257cef7SHong Zhang       len += len_si[proc];
4900409913e3SHong Zhang     }
490158cb9c82SHong Zhang   }
4902409913e3SHong Zhang 
49032257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
49049566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
49059566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4906671beff6SHong Zhang 
49073e06a4e6SHong Zhang   /* post the Irecv of j-structure */
49089566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
49099566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
491002c68681SHong Zhang 
49113e06a4e6SHong Zhang   /* post the Isend of j-structure */
49129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
49133e06a4e6SHong Zhang 
49142257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
4915409913e3SHong Zhang     if (!len_s[proc]) continue;
491602c68681SHong Zhang     i = owners[proc];
49179566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
491851a7d1a8SHong Zhang     k++;
491951a7d1a8SHong Zhang   }
492051a7d1a8SHong Zhang 
49213e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
49229566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
49239566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
492402c68681SHong Zhang 
492502c68681SHong Zhang   /* send and recv i-structure */
49269566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
49279566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
492802c68681SHong Zhang 
49299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
49303e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
49312257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
493202c68681SHong Zhang     if (!len_s[proc]) continue;
49333e06a4e6SHong Zhang     /* form outgoing message for i-structure:
49343e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
49353e06a4e6SHong Zhang                [1:nrows]:           row index (global)
49363e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
49373e06a4e6SHong Zhang     */
49382257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
49393e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
49403e06a4e6SHong Zhang     buf_si[0]   = nrows;
49413e06a4e6SHong Zhang     buf_si_i[0] = 0;
49423e06a4e6SHong Zhang     nrows       = 0;
49433e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
49443e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
49453e06a4e6SHong Zhang       if (anzi) {
49463e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
49473e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
49483e06a4e6SHong Zhang         nrows++;
49493e06a4e6SHong Zhang       }
49503e06a4e6SHong Zhang     }
49519566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
495202c68681SHong Zhang     k++;
49532257cef7SHong Zhang     buf_si += len_si[proc];
495402c68681SHong Zhang   }
49552257cef7SHong Zhang 
49569566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49579566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
495802c68681SHong Zhang 
49599566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
496048a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49613e06a4e6SHong Zhang 
49629566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49639566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49649566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49659566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49669566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49679566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49689566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
496958cb9c82SHong Zhang 
4970bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
497158cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
497358cb9c82SHong Zhang   bi[0] = 0;
497458cb9c82SHong Zhang 
4975be0fcf8dSHong Zhang   /* create and initialize a linked list */
4976be0fcf8dSHong Zhang   nlnk = N + 1;
49779566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
497858cb9c82SHong Zhang 
4979bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4980bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49819566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49822205254eSKarl Rupp 
498358cb9c82SHong Zhang   current_space = free_space;
498458cb9c82SHong Zhang 
4985bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49871d79065fSBarry Smith 
49883e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49892257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49903e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49913e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4992a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49933e06a4e6SHong Zhang   }
49942257cef7SHong Zhang 
4995d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4996bcc1bcd5SHong Zhang   len = 0;
499758cb9c82SHong Zhang   for (i = 0; i < m; i++) {
499858cb9c82SHong Zhang     bnzi = 0;
499958cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
500058cb9c82SHong Zhang     arow = owners[rank] + i;
500158cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
500258cb9c82SHong Zhang     aj   = a->j + ai[arow];
50039566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
500458cb9c82SHong Zhang     bnzi += nlnk;
500558cb9c82SHong Zhang     /* add received col data into lnk */
500651a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
500755d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
50083e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
50093e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
50109566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
50113e06a4e6SHong Zhang         bnzi += nlnk;
50129371c9d4SSatish Balay         nextrow[k]++;
50139371c9d4SSatish Balay         nextai[k]++;
50143e06a4e6SHong Zhang       }
501558cb9c82SHong Zhang     }
5016bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
501758cb9c82SHong Zhang 
501858cb9c82SHong Zhang     /* if free space is not available, make more free space */
501948a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
502058cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
50219566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
50229566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
5023bcc1bcd5SHong Zhang 
502458cb9c82SHong Zhang     current_space->array += bnzi;
502558cb9c82SHong Zhang     current_space->local_used += bnzi;
502658cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
502758cb9c82SHong Zhang 
502858cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
502958cb9c82SHong Zhang   }
5030bcc1bcd5SHong Zhang 
50319566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
5032bcc1bcd5SHong Zhang 
50339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
50349566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
50359566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
5036409913e3SHong Zhang 
5037bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
50389566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
50399566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
504054b84b50SHong Zhang   if (n == PETSC_DECIDE) {
50419566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
504254b84b50SHong Zhang   } else {
50439566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
504454b84b50SHong Zhang   }
50459566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
50469566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
50479566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
5048d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
50499566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
505058cb9c82SHong Zhang 
505190431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
50526abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5053affca5deSHong Zhang   merge->bi        = bi;
5054affca5deSHong Zhang   merge->bj        = bj;
505502c68681SHong Zhang   merge->buf_ri    = buf_ri;
505602c68681SHong Zhang   merge->buf_rj    = buf_rj;
50570298fd71SBarry Smith   merge->coi       = NULL;
50580298fd71SBarry Smith   merge->coj       = NULL;
50590298fd71SBarry Smith   merge->owners_co = NULL;
5060affca5deSHong Zhang 
50619566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5062bf0cc555SLisandro Dalcin 
5063affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50649566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50659566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
50669566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50679566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50689566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5069affca5deSHong Zhang   *mpimat = B_mpi;
507038f152feSBarry Smith 
50719566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5073e5f2cdd8SHong Zhang }
507425616d81SHong Zhang 
5075d4036a1aSHong Zhang /*@C
507611a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5077d4036a1aSHong Zhang   matrices from each processor
5078d4036a1aSHong Zhang 
5079d083f849SBarry Smith   Collective
5080d4036a1aSHong Zhang 
5081d4036a1aSHong Zhang   Input Parameters:
5082d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5083d4036a1aSHong Zhang . seqmat - the input sequential matrices
508411a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
508511a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
508611a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5087d4036a1aSHong Zhang 
5088d4036a1aSHong Zhang   Output Parameter:
5089d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5090d4036a1aSHong Zhang 
5091d4036a1aSHong Zhang   Level: advanced
5092d4036a1aSHong Zhang 
509311a5261eSBarry Smith   Note:
5094d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5095d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
509611a5261eSBarry Smith   destroyed when mpimat is destroyed. Call `PetscObjectQuery()` to access seqmat.
50972ef1f0ffSBarry Smith 
50981cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5099d4036a1aSHong Zhang @*/
5100d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5101d71ae5a4SJacob Faibussowitsch {
51027e63b356SHong Zhang   PetscMPIInt size;
510355d1abb9SHong Zhang 
510455d1abb9SHong Zhang   PetscFunctionBegin;
51059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
51067e63b356SHong Zhang   if (size == 1) {
51079566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
51087e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
51099566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
51107e63b356SHong Zhang     } else {
51119566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
51127e63b356SHong Zhang     }
51139566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51143ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
51157e63b356SHong Zhang   }
51169566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
511748a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
51189566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
51199566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
512155d1abb9SHong Zhang }
51224ebed01fSBarry Smith 
5123bc08b0f1SBarry Smith /*@
51242920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
51258a9c020eSBarry Smith 
51268a9c020eSBarry Smith   Not Collective
51278a9c020eSBarry Smith 
51282fe279fdSBarry Smith   Input Parameter:
512920f4b53cSBarry Smith . A - the matrix
51308a9c020eSBarry Smith 
51318a9c020eSBarry Smith   Output Parameter:
51328a9c020eSBarry Smith . A_loc - the local sequential matrix generated
51338a9c020eSBarry Smith 
51348a9c020eSBarry Smith   Level: developer
51358a9c020eSBarry Smith 
51368a9c020eSBarry Smith   Notes:
51372920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
51382920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
51392920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
51402920cce0SJacob Faibussowitsch 
514111a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51428a9c020eSBarry Smith 
51432920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
51442920cce0SJacob Faibussowitsch 
514511a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
51468a9c020eSBarry Smith 
51471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
51488a9c020eSBarry Smith @*/
5149d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5150d71ae5a4SJacob Faibussowitsch {
51518a9c020eSBarry Smith   PetscBool mpi;
51528a9c020eSBarry Smith 
51538a9c020eSBarry Smith   PetscFunctionBegin;
51548a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51558a9c020eSBarry Smith   if (mpi) {
51568a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51578a9c020eSBarry Smith   } else {
51588a9c020eSBarry Smith     *A_loc = A;
51598a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51608a9c020eSBarry Smith   }
51613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51628a9c020eSBarry Smith }
51638a9c020eSBarry Smith 
51648a9c020eSBarry Smith /*@
51652920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
516625616d81SHong Zhang 
516732fba14fSHong Zhang   Not Collective
516825616d81SHong Zhang 
516925616d81SHong Zhang   Input Parameters:
517025616d81SHong Zhang + A     - the matrix
517111a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
517225616d81SHong Zhang 
517325616d81SHong Zhang   Output Parameter:
517425616d81SHong Zhang . A_loc - the local sequential matrix generated
517525616d81SHong Zhang 
517625616d81SHong Zhang   Level: developer
517725616d81SHong Zhang 
517877c65a98SStefano Zampini   Notes:
51792920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51802920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51812920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51822920cce0SJacob Faibussowitsch 
518311a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51848a9c020eSBarry Smith 
51852920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51862920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51872920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51882920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
518977c65a98SStefano Zampini 
51901cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
519125616d81SHong Zhang @*/
5192d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5193d71ae5a4SJacob Faibussowitsch {
519401b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5195b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5196b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5197ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5198ce496241SStefano Zampini   PetscScalar       *ca, *cam;
519977c65a98SStefano Zampini   PetscMPIInt        size;
5200d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
52015a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
52028661ff28SBarry Smith   PetscBool          match;
520325616d81SHong Zhang 
520425616d81SHong Zhang   PetscFunctionBegin;
52059566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
520628b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
52079566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
520877c65a98SStefano Zampini   if (size == 1) {
520977c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52109566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
521177c65a98SStefano Zampini       *A_loc = mpimat->A;
521277c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52139566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
521477c65a98SStefano Zampini     }
52153ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
521677c65a98SStefano Zampini   }
521770a9ba44SHong Zhang 
52189566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5219b78526a6SJose E. Roman   a  = (Mat_SeqAIJ *)(mpimat->A)->data;
5220b78526a6SJose E. Roman   b  = (Mat_SeqAIJ *)(mpimat->B)->data;
52219371c9d4SSatish Balay   ai = a->i;
52229371c9d4SSatish Balay   aj = a->j;
52239371c9d4SSatish Balay   bi = b->i;
52249371c9d4SSatish Balay   bj = b->j;
52259566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
52269566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5227ce496241SStefano Zampini   aa = aav;
5228ce496241SStefano Zampini   ba = bav;
522901b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
52309566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5231dea91ad1SHong Zhang     ci[0] = 0;
5232ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
52339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
52349566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5235dea91ad1SHong Zhang     k = 0;
523601b7ae99SHong Zhang     for (i = 0; i < am; i++) {
52375a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52385a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
523901b7ae99SHong Zhang       /* off-diagonal portion of A */
52405a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52415a7d977cSHong Zhang         col = cmap[*bj];
52425a7d977cSHong Zhang         if (col >= cstart) break;
52439371c9d4SSatish Balay         cj[k] = col;
52449371c9d4SSatish Balay         bj++;
52455a7d977cSHong Zhang         ca[k++] = *ba++;
52465a7d977cSHong Zhang       }
52475a7d977cSHong Zhang       /* diagonal portion of A */
52485a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
52495a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
52505a7d977cSHong Zhang         ca[k++] = *aa++;
52515a7d977cSHong Zhang       }
52525a7d977cSHong Zhang       /* off-diagonal portion of A */
52535a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52545a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52555a7d977cSHong Zhang         ca[k++] = *ba++;
52565a7d977cSHong Zhang       }
525725616d81SHong Zhang     }
5258dea91ad1SHong Zhang     /* put together the new matrix */
52599566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5260dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5261dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5262dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5263e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5264e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5265dea91ad1SHong Zhang     mat->nonew   = 0;
52665a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52675a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5268fff043a9SJunchao Zhang     ci  = mat->i;
5269fff043a9SJunchao Zhang     cj  = mat->j;
52709566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52715a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52725a7d977cSHong Zhang       /* off-diagonal portion of A */
52735a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52745a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52755a7d977cSHong Zhang         col = cmap[*bj];
52765a7d977cSHong Zhang         if (col >= cstart) break;
52779371c9d4SSatish Balay         *cam++ = *ba++;
52789371c9d4SSatish Balay         bj++;
52795a7d977cSHong Zhang       }
52805a7d977cSHong Zhang       /* diagonal portion of A */
5281ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5282a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52835a7d977cSHong Zhang       /* off-diagonal portion of A */
5284f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52859371c9d4SSatish Balay         *cam++ = *ba++;
52869371c9d4SSatish Balay         bj++;
5287f33d1a9aSHong Zhang       }
52885a7d977cSHong Zhang     }
52899566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
529098921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52939566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
529525616d81SHong Zhang }
529625616d81SHong Zhang 
5297ed502f03SStefano Zampini /*@
529811a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52994cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5300ed502f03SStefano Zampini 
5301ed502f03SStefano Zampini   Not Collective
5302ed502f03SStefano Zampini 
5303ed502f03SStefano Zampini   Input Parameters:
5304ed502f03SStefano Zampini + A     - the matrix
530511a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5306ed502f03SStefano Zampini 
5307d8d19677SJose E. Roman   Output Parameters:
53082ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5309ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5310ed502f03SStefano Zampini 
5311ed502f03SStefano Zampini   Level: developer
5312ed502f03SStefano Zampini 
531311a5261eSBarry Smith   Note:
53142ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
53154cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5316ed502f03SStefano Zampini 
53171cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5318ed502f03SStefano Zampini @*/
5319d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5320d71ae5a4SJacob Faibussowitsch {
5321ed502f03SStefano Zampini   Mat             Ao, Ad;
5322ed502f03SStefano Zampini   const PetscInt *cmap;
5323ed502f03SStefano Zampini   PetscMPIInt     size;
5324ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5325ed502f03SStefano Zampini 
5326ed502f03SStefano Zampini   PetscFunctionBegin;
53279566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
53289566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5329ed502f03SStefano Zampini   if (size == 1) {
5330ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
53319566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5332ed502f03SStefano Zampini       *A_loc = Ad;
5333ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53349566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5335ed502f03SStefano Zampini     }
53369566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
53373ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5338ed502f03SStefano Zampini   }
53399566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
53409566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5341ed502f03SStefano Zampini   if (f) {
53429566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5343ed502f03SStefano Zampini   } else {
5344ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5345ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5346ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5347ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5348ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5349ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5350ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5351ed502f03SStefano Zampini     PetscScalar       *ca;
5352ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5353ed502f03SStefano Zampini 
53549566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53559566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53569566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53579566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5358ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5359ed502f03SStefano Zampini       PetscInt k;
53609566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53619566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53629566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5363ed502f03SStefano Zampini       ci[0] = 0;
5364ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5365ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5366ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5367ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5368ed502f03SStefano Zampini         /* diagonal portion of A */
5369ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5370ed502f03SStefano Zampini           cj[k] = *aj++;
5371ed502f03SStefano Zampini           ca[k] = *aa++;
5372ed502f03SStefano Zampini         }
5373ed502f03SStefano Zampini         /* off-diagonal portion of A */
5374ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5375ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5376ed502f03SStefano Zampini           ca[k] = *ba++;
5377ed502f03SStefano Zampini         }
5378ed502f03SStefano Zampini       }
5379ed502f03SStefano Zampini       /* put together the new matrix */
53809566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5381ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5382ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5383ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5384ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5385ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5386ed502f03SStefano Zampini       c->nonew   = 0;
53879566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5388ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53899566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5390ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5391ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5392ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5393ed502f03SStefano Zampini         /* diagonal portion of A */
5394ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5395ed502f03SStefano Zampini         /* off-diagonal portion of A */
5396ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5397ed502f03SStefano Zampini       }
53989566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
539998921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
54009566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
54019566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5402ed502f03SStefano Zampini     if (glob) {
5403ed502f03SStefano Zampini       PetscInt cst, *gidx;
5404ed502f03SStefano Zampini 
54059566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
54069566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5407ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5408ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
54099566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5410ed502f03SStefano Zampini     }
5411ed502f03SStefano Zampini   }
54129566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
54133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5414ed502f03SStefano Zampini }
5415ed502f03SStefano Zampini 
541632fba14fSHong Zhang /*@C
541711a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
541832fba14fSHong Zhang 
541932fba14fSHong Zhang   Not Collective
542032fba14fSHong Zhang 
542132fba14fSHong Zhang   Input Parameters:
542232fba14fSHong Zhang + A     - the matrix
542311a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
542420f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
542520f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
542632fba14fSHong Zhang 
542732fba14fSHong Zhang   Output Parameter:
542832fba14fSHong Zhang . A_loc - the local sequential matrix generated
542932fba14fSHong Zhang 
543032fba14fSHong Zhang   Level: developer
543132fba14fSHong Zhang 
54321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
543332fba14fSHong Zhang @*/
5434d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5435d71ae5a4SJacob Faibussowitsch {
543632fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
543732fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
543832fba14fSHong Zhang   IS          isrowa, iscola;
543932fba14fSHong Zhang   Mat        *aloc;
54404a2b5492SBarry Smith   PetscBool   match;
544132fba14fSHong Zhang 
544232fba14fSHong Zhang   PetscFunctionBegin;
54439566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
544428b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
54459566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
544632fba14fSHong Zhang   if (!row) {
54479371c9d4SSatish Balay     start = A->rmap->rstart;
54489371c9d4SSatish Balay     end   = A->rmap->rend;
54499566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
545032fba14fSHong Zhang   } else {
545132fba14fSHong Zhang     isrowa = *row;
545232fba14fSHong Zhang   }
545332fba14fSHong Zhang   if (!col) {
5454d0f46423SBarry Smith     start = A->cmap->rstart;
545532fba14fSHong Zhang     cmap  = a->garray;
5456d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5457d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54589566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
545932fba14fSHong Zhang     ncols = 0;
546032fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
546132fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
546232fba14fSHong Zhang       else break;
546332fba14fSHong Zhang     }
546432fba14fSHong Zhang     imark = i;
546532fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
546632fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54679566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
546832fba14fSHong Zhang   } else {
546932fba14fSHong Zhang     iscola = *col;
547032fba14fSHong Zhang   }
547132fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54729566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
547332fba14fSHong Zhang     aloc[0] = *A_loc;
547432fba14fSHong Zhang   }
54759566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5476109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54779566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5478109e0772SStefano Zampini   }
547932fba14fSHong Zhang   *A_loc = aloc[0];
54809566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
548148a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
548248a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54839566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
548532fba14fSHong Zhang }
548632fba14fSHong Zhang 
54875c65b9ecSFande Kong /*
54885c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54895c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54905c65b9ecSFande Kong  * on a global size.
54915c65b9ecSFande Kong  * */
5492ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5493d71ae5a4SJacob Faibussowitsch {
54945c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
54955c65b9ecSFande Kong   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)(p->A)->data, *po = (Mat_SeqAIJ *)(p->B)->data, *p_oth;
5496131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5497131c27b5Sprj-   PetscMPIInt            owner;
54985c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54995c65b9ecSFande Kong   const PetscInt        *lrowindices;
55005c65b9ecSFande Kong   PetscSF                sf, osf;
55015c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
55025c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
55035c65b9ecSFande Kong   MPI_Comm               comm;
55045c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5505fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
55065c65b9ecSFande Kong 
55075c65b9ecSFande Kong   PetscFunctionBegin;
55089566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
55095c65b9ecSFande Kong   /* plocalsize is the number of roots
55105c65b9ecSFande Kong    * nrows is the number of leaves
55115c65b9ecSFande Kong    * */
55129566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
55139566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
55149566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
55159566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
55165c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55175c65b9ecSFande Kong     /* Find a remote index and an owner for a row
55185c65b9ecSFande Kong      * The row could be local or remote
55195c65b9ecSFande Kong      * */
552034bcad68SFande Kong     owner = 0;
552134bcad68SFande Kong     lidx  = 0;
55229566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
55235c65b9ecSFande Kong     iremote[i].index = lidx;
55245c65b9ecSFande Kong     iremote[i].rank  = owner;
55255c65b9ecSFande Kong   }
55265c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
55279566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5528f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
55295c65b9ecSFande Kong    * offsets
55305c65b9ecSFande Kong    * */
55319566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55329566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55339566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5534bc8e477aSFande Kong 
55359566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
55369566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
55379566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
55385c65b9ecSFande Kong   roffsets[0] = 0;
55395c65b9ecSFande Kong   roffsets[1] = 0;
55405c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
55414cf0e950SBarry Smith     /* diagonal */
55425c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
55434cf0e950SBarry Smith     /* off-diagonal */
55445c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
55455c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
55465c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
55475c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
55485c65b9ecSFande Kong   }
55499566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
55509566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
55515c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
55529566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55539566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55549566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55559566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55569566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55579566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55589566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55595c65b9ecSFande Kong   dntotalcols = 0;
55605c65b9ecSFande Kong   ontotalcols = 0;
5561bc8e477aSFande Kong   ncol        = 0;
55625c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55635c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5564bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55654cf0e950SBarry Smith     /* diagonal */
55665c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55674cf0e950SBarry Smith     /* off-diagonal */
55685c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55695c65b9ecSFande Kong   }
55705c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55715c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55725c65b9ecSFande Kong    * */
55739566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55749566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55759566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55765c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55774cf0e950SBarry Smith   /* diagonal */
55789566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55794cf0e950SBarry Smith   /* off-diagonal */
55809566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55814cf0e950SBarry Smith   /* diagonal */
55829566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55834cf0e950SBarry Smith   /* off-diagonal */
55849566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55855c65b9ecSFande Kong   dntotalcols = 0;
55865c65b9ecSFande Kong   ontotalcols = 0;
55875c65b9ecSFande Kong   ntotalcols  = 0;
55885c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
558934bcad68SFande Kong     owner = 0;
55909566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55915c65b9ecSFande Kong     /* Set iremote for diag matrix */
55925c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55935c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55945c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55955c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55965c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55975c65b9ecSFande Kong     }
55984cf0e950SBarry Smith     /* off-diagonal */
55995c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
56005c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
56015c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
56025c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
56035c65b9ecSFande Kong     }
56045c65b9ecSFande Kong   }
56059566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
56069566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
56079566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
56089566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
56095c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
56105c65b9ecSFande Kong    * Diag matrix
56115c65b9ecSFande Kong    * */
56129566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
56139566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
56149566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
56155c65b9ecSFande Kong 
56169566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
56174cf0e950SBarry Smith   /* off-diagonal */
56189566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
56199566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
56209566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
56219566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56234cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
56249566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56259566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56269566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
56275c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
56285c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
56299566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56305c65b9ecSFande Kong   /* We want P_oth store global indices */
56319566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
56325c65b9ecSFande Kong   /* Use memory scalable approach */
56339566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
56349566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
56359566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56369566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56375c65b9ecSFande Kong   /* Convert back to local indices */
56385c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
56399566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56405c65b9ecSFande Kong   nout = 0;
56419566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
564208401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
56439566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
56445c65b9ecSFande Kong   /* Exchange values */
56459566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56469566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56479566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56489566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56495c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
56505c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
56519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
56529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56535c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56549566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56559566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56569566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56579566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56595c65b9ecSFande Kong }
56605c65b9ecSFande Kong 
56615c65b9ecSFande Kong /*
56625c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56635c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56645c65b9ecSFande Kong  * */
5665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5666d71ae5a4SJacob Faibussowitsch {
56675c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5668bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5669bc8e477aSFande Kong   IS          rows, map;
5670bc8e477aSFande Kong   PetscHMapI  hamp;
5671bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56725c65b9ecSFande Kong   MPI_Comm    comm;
56735c65b9ecSFande Kong   PetscSF     sf, osf;
5674bc8e477aSFande Kong   PetscBool   has;
56755c65b9ecSFande Kong 
56765c65b9ecSFande Kong   PetscFunctionBegin;
56779566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56789566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56795c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56805c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56815c65b9ecSFande Kong    * */
56825c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56835c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5684eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56859566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5686bc8e477aSFande Kong     count = 0;
5687bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5688bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5689bc8e477aSFande Kong       key = a->garray[i] / dof;
56909566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5691bc8e477aSFande Kong       if (!has) {
5692bc8e477aSFande Kong         mapping[i] = count;
56939566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5694bc8e477aSFande Kong       } else {
5695bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5696bc8e477aSFande Kong         mapping[i] = count - 1;
56975c65b9ecSFande Kong       }
5698bc8e477aSFande Kong     }
56999566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
57009566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5701eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
57029566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
57035c65b9ecSFande Kong     off = 0;
57049566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
57059566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
57069566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
57079566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
57085c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
57099566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
57109566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
57119566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
57129566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
57139566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
57145c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
57155c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
571635cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5717fff043a9SJunchao Zhang      */
5718fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5719fff043a9SJunchao Zhang 
57209566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
57219566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
572208401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
57235c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
57245c65b9ecSFande Kong     /* Update values in place */
57259566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
57269566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
57279566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57289566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57299566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57309566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57319566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
57329566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
57336718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
57349566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
57353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57365c65b9ecSFande Kong }
57375c65b9ecSFande Kong 
573825616d81SHong Zhang /*@C
573920f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
574025616d81SHong Zhang 
5741c3339decSBarry Smith   Collective
574225616d81SHong Zhang 
574325616d81SHong Zhang   Input Parameters:
574411a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
574511a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
574611a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
574725616d81SHong Zhang 
5748f1a722f8SMatthew G. Knepley   Output Parameters:
574927430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
575027430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5751f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
575225616d81SHong Zhang 
575325616d81SHong Zhang   Level: developer
575425616d81SHong Zhang 
575520f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
575625616d81SHong Zhang @*/
5757d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5758d71ae5a4SJacob Faibussowitsch {
5759899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5760b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
576125616d81SHong Zhang   IS          isrowb, iscolb;
57620298fd71SBarry Smith   Mat        *bseq = NULL;
576325616d81SHong Zhang 
576425616d81SHong Zhang   PetscFunctionBegin;
576520f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
576620f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57679566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
576825616d81SHong Zhang 
576925616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5770d0f46423SBarry Smith     start = A->cmap->rstart;
577125616d81SHong Zhang     cmap  = a->garray;
5772d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5773d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57749566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
577525616d81SHong Zhang     ncols = 0;
57760390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
577725616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
577825616d81SHong Zhang       else break;
577925616d81SHong Zhang     }
578025616d81SHong Zhang     imark = i;
57810390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57820390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57839566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57849566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
578525616d81SHong Zhang   } else {
578608401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57879371c9d4SSatish Balay     isrowb = *rowb;
57889371c9d4SSatish Balay     iscolb = *colb;
57899566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
579025616d81SHong Zhang     bseq[0] = *B_seq;
579125616d81SHong Zhang   }
57929566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
579325616d81SHong Zhang   *B_seq = bseq[0];
57949566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
579525616d81SHong Zhang   if (!rowb) {
57969566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
579725616d81SHong Zhang   } else {
579825616d81SHong Zhang     *rowb = isrowb;
579925616d81SHong Zhang   }
580025616d81SHong Zhang   if (!colb) {
58019566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
580225616d81SHong Zhang   } else {
580325616d81SHong Zhang     *colb = iscolb;
580425616d81SHong Zhang   }
58059566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
58063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
580725616d81SHong Zhang }
5808429d309bSHong Zhang 
5809f8487c73SHong Zhang /*
581027430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
581101b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5812429d309bSHong Zhang 
5813c3339decSBarry Smith     Collective
5814429d309bSHong Zhang 
5815429d309bSHong Zhang    Input Parameters:
581627430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
581727430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5818429d309bSHong Zhang 
5819429d309bSHong Zhang    Output Parameter:
58200298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
58210298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
58220298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5823598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5824429d309bSHong Zhang 
582511a5261eSBarry Smith     Developer Note:
582611a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
58276eb45d04SBarry Smith      for this matrix. This is not desirable..
58286eb45d04SBarry Smith 
5829429d309bSHong Zhang     Level: developer
5830429d309bSHong Zhang 
5831f8487c73SHong Zhang */
5832d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5833d71ae5a4SJacob Faibussowitsch {
5834899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
583587025532SHong Zhang   Mat_SeqAIJ        *b_oth;
58364b8d542aSHong Zhang   VecScatter         ctx;
5837ce94432eSBarry Smith   MPI_Comm           comm;
58383515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
58393515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5840277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
5841f4259b30SLisandro Dalcin   PetscInt           i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len;
5842277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5843ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5844ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5845429d309bSHong Zhang 
5846429d309bSHong Zhang   PetscFunctionBegin;
58479566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
58489566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5849a7c7454dSHong Zhang 
585020f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
585120f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58529566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58539566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5854a6b2eed2SHong Zhang 
5855ec07b8f8SHong Zhang   if (size == 1) {
5856ec07b8f8SHong Zhang     startsj_s = NULL;
5857ec07b8f8SHong Zhang     bufa_ptr  = NULL;
585852f7967eSHong Zhang     *B_oth    = NULL;
58593ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5860ec07b8f8SHong Zhang   }
5861ec07b8f8SHong Zhang 
5862fa83eaafSHong Zhang   ctx = a->Mvctx;
58634b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58644b8d542aSHong Zhang 
58659566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58663515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58679566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58689566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5870ddea5d60SJunchao Zhang   rwaits = reqs;
58718e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5872429d309bSHong Zhang 
5873b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5874429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5875a6b2eed2SHong Zhang     /* i-array */
5876a6b2eed2SHong Zhang     /*  post receives */
58779566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5878a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
587974268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5880e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58819566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5882429d309bSHong Zhang     }
5883a6b2eed2SHong Zhang 
5884a6b2eed2SHong Zhang     /* pack the outgoing message */
58859566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58862205254eSKarl Rupp 
58872205254eSKarl Rupp     sstartsj[0] = 0;
58882205254eSKarl Rupp     rstartsj[0] = 0;
5889a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58903515ee7fSJunchao Zhang     if (nsends) {
58913515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58929566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58933515ee7fSJunchao Zhang     }
5894a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58953515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5896e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
589787025532SHong Zhang       for (j = 0; j < nrows; j++) {
5898d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5899e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
59009566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
59012205254eSKarl Rupp 
5902e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
59032205254eSKarl Rupp 
5904e42f35eeSHong Zhang           len += ncols;
59059566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5906e42f35eeSHong Zhang         }
5907a6b2eed2SHong Zhang         k++;
5908429d309bSHong Zhang       }
59099566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
59102205254eSKarl Rupp 
5911dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5912429d309bSHong Zhang     }
591387025532SHong Zhang     /* recvs and sends of i-array are completed */
59149566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59159566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5916e42f35eeSHong Zhang 
5917a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
59189566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
59199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5920a6b2eed2SHong Zhang 
592187025532SHong Zhang     /* create i-array of B_oth */
59229566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
59232205254eSKarl Rupp 
592487025532SHong Zhang     b_othi[0] = 0;
5925a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5926a6b2eed2SHong Zhang     k         = 0;
5927a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
59283515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
59293515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
593087025532SHong Zhang       for (j = 0; j < nrows; j++) {
593187025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
59329566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5933f91af8c7SBarry Smith         k++;
5934a6b2eed2SHong Zhang       }
5935dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5936a6b2eed2SHong Zhang     }
59379566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5938a6b2eed2SHong Zhang 
59396aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
59409566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
59419566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5942a6b2eed2SHong Zhang 
594387025532SHong Zhang     /* j-array */
5944a6b2eed2SHong Zhang     /*  post receives of j-array */
5945a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
594687025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59479566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5948a6b2eed2SHong Zhang     }
5949e42f35eeSHong Zhang 
5950e42f35eeSHong Zhang     /* pack the outgoing message j-array */
59513515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5952a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5953e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5954a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
595587025532SHong Zhang       for (j = 0; j < nrows; j++) {
5956d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5957e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59589566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5959ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59609566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5961e42f35eeSHong Zhang         }
596287025532SHong Zhang       }
59639566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
596487025532SHong Zhang     }
596587025532SHong Zhang 
596687025532SHong Zhang     /* recvs and sends of j-array are completed */
59679566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
596887025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5969b7f45c76SHong Zhang     sstartsj = *startsj_s;
59701d79065fSBarry Smith     rstartsj = *startsj_r;
597187025532SHong Zhang     bufa     = *bufa_ptr;
597287025532SHong Zhang     b_oth    = (Mat_SeqAIJ *)(*B_oth)->data;
59739566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5974ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
597587025532SHong Zhang 
597687025532SHong Zhang   /* a-array */
597787025532SHong Zhang   /*  post receives of a-array */
597887025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
597987025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59809566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
598187025532SHong Zhang   }
5982e42f35eeSHong Zhang 
5983e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59843515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
598587025532SHong Zhang   for (i = 0; i < nsends; i++) {
5986e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
598787025532SHong Zhang     bufA  = bufa + sstartsj[i];
598887025532SHong Zhang     for (j = 0; j < nrows; j++) {
5989d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5990e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59919566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5992ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59939566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5994e42f35eeSHong Zhang       }
5995a6b2eed2SHong Zhang     }
59969566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5997a6b2eed2SHong Zhang   }
599887025532SHong Zhang   /* recvs and sends of a-array are completed */
59999566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
60009566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
6001a6b2eed2SHong Zhang 
600287025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
6003a6b2eed2SHong Zhang     /* put together the new matrix */
60049566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
6005a6b2eed2SHong Zhang 
6006a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
6007a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
600887025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
6009e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
6010e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
601187025532SHong Zhang     b_oth->nonew   = 0;
6012a6b2eed2SHong Zhang 
60139566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
6014b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
60159566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
60169566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
6017dea91ad1SHong Zhang     } else {
6018b7f45c76SHong Zhang       *startsj_s = sstartsj;
60191d79065fSBarry Smith       *startsj_r = rstartsj;
602087025532SHong Zhang       *bufa_ptr  = bufa;
602187025532SHong Zhang     }
6022fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
60239566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
6024dea91ad1SHong Zhang   }
60253515ee7fSJunchao Zhang 
60269566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
60279566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
60289566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
60293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6030429d309bSHong Zhang }
6031ccd8e176SBarry Smith 
6032cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
6033cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
6034ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
60359779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
6036a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
6037191b95cbSRichard Tran Mills #endif
6038ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
6039cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
60405d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6041cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
60425d7652ecSHong Zhang #endif
6043d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
6044d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
6045d24d4204SJose E. Roman #endif
604663c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
604763c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
604863c07aadSStefano Zampini #endif
60493338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
60503338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60513338378cSStefano Zampini #endif
6052d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6053d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6054d5e393b6SSuyash Tandon #endif
60553d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60563d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60573d0639e7SStefano Zampini #endif
6058d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60594222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60604222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
606117667f90SBarry Smith 
6062fc4dec0aSBarry Smith /*
6063fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6064fc4dec0aSBarry Smith 
6065fc4dec0aSBarry Smith                n                       p                          p
60662da392ccSBarry Smith         [             ]       [             ]         [                 ]
60672da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60682da392ccSBarry Smith         [             ]       [             ]         [                 ]
6069fc4dec0aSBarry Smith 
6070fc4dec0aSBarry Smith */
6071d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6072d71ae5a4SJacob Faibussowitsch {
6073fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6074fc4dec0aSBarry Smith 
6075fc4dec0aSBarry Smith   PetscFunctionBegin;
60769566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60779566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
60789566063dSJacob Faibussowitsch   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct));
60799566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60809566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60817fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60829566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60839566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6085fc4dec0aSBarry Smith }
6086fc4dec0aSBarry Smith 
6087d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6088d71ae5a4SJacob Faibussowitsch {
60896718818eSStefano Zampini   PetscBool cisdense;
6090fc4dec0aSBarry Smith 
6091fc4dec0aSBarry Smith   PetscFunctionBegin;
609208401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60939566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60949566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6095d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
609648a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60979566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6098f75ecaa4SHong Zhang 
60994222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
61003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6101fc4dec0aSBarry Smith }
6102fc4dec0aSBarry Smith 
6103d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6104d71ae5a4SJacob Faibussowitsch {
61054222ddf1SHong Zhang   Mat_Product *product = C->product;
61064222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6107fc4dec0aSBarry Smith 
6108fc4dec0aSBarry Smith   PetscFunctionBegin;
610920f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
611020f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
61114222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
61124222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
61133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6114fc4dec0aSBarry Smith }
6115fc4dec0aSBarry Smith 
6116d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6117d71ae5a4SJacob Faibussowitsch {
61184222ddf1SHong Zhang   Mat_Product *product = C->product;
61194222ddf1SHong Zhang 
61204222ddf1SHong Zhang   PetscFunctionBegin;
612148a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
61223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61234222ddf1SHong Zhang }
6124394ed5ebSJunchao Zhang 
612527430b45SBarry Smith /*
612627430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6127394ed5ebSJunchao Zhang 
6128394ed5ebSJunchao Zhang   Input Parameters:
6129394ed5ebSJunchao Zhang 
6130651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6131651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6132394ed5ebSJunchao Zhang 
6133158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6134394ed5ebSJunchao Zhang 
6135394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6136394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6137394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6138394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6139394ed5ebSJunchao Zhang 
6140394ed5ebSJunchao Zhang     Similar for Set2.
6141394ed5ebSJunchao Zhang 
6142394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6143394ed5ebSJunchao Zhang 
6144158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6145394ed5ebSJunchao Zhang 
6146394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6147394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6148394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6149394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6150394ed5ebSJunchao Zhang */
6151d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6152d71ae5a4SJacob Faibussowitsch {
6153394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6154394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6155394ed5ebSJunchao Zhang 
6156394ed5ebSJunchao Zhang   PetscFunctionBegin;
61579566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6158394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6159394ed5ebSJunchao Zhang   i[0]        = 0;
6160394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6161394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6162394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6163394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6164394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6165394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6166394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6167394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6168394ed5ebSJunchao Zhang         imap1[t1] = t;
6169394ed5ebSJunchao Zhang         imap2[t2] = t;
6170394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6171394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61729371c9d4SSatish Balay         t1++;
61739371c9d4SSatish Balay         t2++;
61749371c9d4SSatish Balay         t++;
6175394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6176394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6177394ed5ebSJunchao Zhang         imap1[t1] = t;
6178394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61799371c9d4SSatish Balay         t1++;
61809371c9d4SSatish Balay         t++;
6181394ed5ebSJunchao Zhang       } else {
6182394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6183394ed5ebSJunchao Zhang         imap2[t2] = t;
6184394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61859371c9d4SSatish Balay         t2++;
61869371c9d4SSatish Balay         t++;
6187394ed5ebSJunchao Zhang       }
6188394ed5ebSJunchao Zhang     }
6189394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6190394ed5ebSJunchao Zhang     while (b1 < e1) {
6191394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6192394ed5ebSJunchao Zhang       imap1[t1] = t;
6193394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61949371c9d4SSatish Balay       t1++;
61959371c9d4SSatish Balay       t++;
6196394ed5ebSJunchao Zhang     }
6197394ed5ebSJunchao Zhang     while (b2 < e2) {
6198394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6199394ed5ebSJunchao Zhang       imap2[t2] = t;
6200394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
62019371c9d4SSatish Balay       t2++;
62029371c9d4SSatish Balay       t++;
6203394ed5ebSJunchao Zhang     }
6204394ed5ebSJunchao Zhang     i[r + 1] = t;
6205394ed5ebSJunchao Zhang   }
62063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6207394ed5ebSJunchao Zhang }
6208394ed5ebSJunchao Zhang 
620927430b45SBarry Smith /*
621027430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6211394ed5ebSJunchao Zhang 
6212394ed5ebSJunchao Zhang   Input Parameters:
6213394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6214394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6215394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6216394ed5ebSJunchao Zhang 
6217394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6218394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6219394ed5ebSJunchao Zhang 
6220394ed5ebSJunchao Zhang   Output Parameters:
6221394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6222394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6223394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6224394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6225394ed5ebSJunchao Zhang 
6226394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6227158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6228158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6229394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6230394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6231394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6232394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6233394ed5ebSJunchao Zhang 
6234394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6235394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6236394ed5ebSJunchao Zhang 
6237394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6238394ed5ebSJunchao Zhang 
6239158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6240394ed5ebSJunchao Zhang */
6241d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6242d71ae5a4SJacob Faibussowitsch {
6243394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6244394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6245394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6246394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6247394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6248394ed5ebSJunchao Zhang 
6249394ed5ebSJunchao Zhang   PetscFunctionBegin;
62509566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62519566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6252394ed5ebSJunchao Zhang   m = rend - rstart;
6253394ed5ebSJunchao Zhang 
6254651b1cf9SStefano Zampini   /* Skip negative rows */
6255651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62569371c9d4SSatish Balay     if (i[k] >= 0) break;
6257394ed5ebSJunchao Zhang 
6258394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6259394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6260394ed5ebSJunchao Zhang   */
6261394ed5ebSJunchao Zhang   while (k < n) {
6262394ed5ebSJunchao Zhang     row = i[k];
6263394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62649371c9d4SSatish Balay     for (s = k; s < n; s++)
62659371c9d4SSatish Balay       if (i[s] != row) break;
6266651b1cf9SStefano Zampini 
6267651b1cf9SStefano Zampini     /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */
6268394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
6269651b1cf9SStefano Zampini       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT;
627054c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6271394ed5ebSJunchao Zhang     }
62729566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6273158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6274394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6275394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6276394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6277394ed5ebSJunchao Zhang 
6278394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6279394ed5ebSJunchao Zhang     Atot += mid - k;
6280394ed5ebSJunchao Zhang     Btot += s - mid;
6281394ed5ebSJunchao Zhang 
6282651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6283394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6284394ed5ebSJunchao Zhang       col = j[p];
62859371c9d4SSatish Balay       do {
6286651b1cf9SStefano Zampini         j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */
62879371c9d4SSatish Balay         p++;
6288651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6289394ed5ebSJunchao Zhang       Annz++;
6290394ed5ebSJunchao Zhang     }
6291394ed5ebSJunchao Zhang 
6292651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6293394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6294394ed5ebSJunchao Zhang       col = j[p];
6295d71ae5a4SJacob Faibussowitsch       do {
6296d71ae5a4SJacob Faibussowitsch         p++;
6297d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6298394ed5ebSJunchao Zhang       Bnnz++;
6299394ed5ebSJunchao Zhang     }
6300394ed5ebSJunchao Zhang     k = s;
6301394ed5ebSJunchao Zhang   }
6302394ed5ebSJunchao Zhang 
6303394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6304158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6305158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6306158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6307158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6308394ed5ebSJunchao Zhang 
63096aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6310394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6311394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6312394ed5ebSJunchao Zhang     k   = rowBegin[r];
6313394ed5ebSJunchao Zhang     mid = rowMid[r];
6314394ed5ebSJunchao Zhang     s   = rowEnd[r];
63158e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
63168e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6317394ed5ebSJunchao Zhang     Atot += mid - k;
6318394ed5ebSJunchao Zhang     Btot += s - mid;
6319394ed5ebSJunchao Zhang 
6320394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6321394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6322394ed5ebSJunchao Zhang       col = j[p];
6323394ed5ebSJunchao Zhang       q   = p;
6324d71ae5a4SJacob Faibussowitsch       do {
6325d71ae5a4SJacob Faibussowitsch         p++;
6326d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6327394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6328394ed5ebSJunchao Zhang       Annz++;
6329394ed5ebSJunchao Zhang     }
6330394ed5ebSJunchao Zhang 
6331394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6332394ed5ebSJunchao Zhang       col = j[p];
6333394ed5ebSJunchao Zhang       q   = p;
6334d71ae5a4SJacob Faibussowitsch       do {
6335d71ae5a4SJacob Faibussowitsch         p++;
6336d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6337394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6338394ed5ebSJunchao Zhang       Bnnz++;
6339394ed5ebSJunchao Zhang     }
6340394ed5ebSJunchao Zhang   }
6341394ed5ebSJunchao Zhang   /* Output */
6342394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6343394ed5ebSJunchao Zhang   *Annz_  = Annz;
6344394ed5ebSJunchao Zhang   *Atot_  = Atot;
6345394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6346394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6347394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6348394ed5ebSJunchao Zhang   *Btot_  = Btot;
6349394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
63503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6351394ed5ebSJunchao Zhang }
6352394ed5ebSJunchao Zhang 
635327430b45SBarry Smith /*
635427430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6355158ec288SJunchao Zhang 
6356158ec288SJunchao Zhang   Input Parameters:
6357158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6358158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6359158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6360651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6361158ec288SJunchao Zhang 
6362158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6363158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6364158ec288SJunchao Zhang 
6365158ec288SJunchao Zhang   Example:
6366158ec288SJunchao Zhang     nnz1 = 4
6367158ec288SJunchao Zhang     nnz  = 6
6368158ec288SJunchao Zhang     imap = [1,3,4,5]
6369158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6370158ec288SJunchao Zhang    then,
6371158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6372158ec288SJunchao Zhang */
6373d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6374d71ae5a4SJacob Faibussowitsch {
6375158ec288SJunchao Zhang   PetscCount k, p;
6376158ec288SJunchao Zhang 
6377158ec288SJunchao Zhang   PetscFunctionBegin;
6378158ec288SJunchao Zhang   jmap_new[0] = 0;
6379158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6380158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6381158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6382158ec288SJunchao Zhang   }
6383158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6385158ec288SJunchao Zhang }
6386158ec288SJunchao Zhang 
63872c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data)
63882c4ab24aSJunchao Zhang {
63892c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data;
63902c4ab24aSJunchao Zhang 
63912c4ab24aSJunchao Zhang   PetscFunctionBegin;
63922c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63932c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63942c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63952c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63962c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63972c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
63982c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
63992c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
64002c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
64012c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
64022c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
64032c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
64042c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
64052c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
64062c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
64072c4ab24aSJunchao Zhang }
64082c4ab24aSJunchao Zhang 
6409d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6410d71ae5a4SJacob Faibussowitsch {
6411394ed5ebSJunchao Zhang   MPI_Comm             comm;
6412394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6413394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6414394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6415394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
64162c4ab24aSJunchao Zhang   PetscContainer       container;
64172c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6418394ed5ebSJunchao Zhang 
6419394ed5ebSJunchao Zhang   PetscFunctionBegin;
64209566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
64219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6422cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6423eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6424cbc6b225SStefano Zampini #else
64259566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6426cbc6b225SStefano Zampini #endif
64279566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6428cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6429cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6430cbc6b225SStefano Zampini 
64319566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
64329566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
64339566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
64349566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
64359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
64369566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
64379566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
64389566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
64399566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6440394ed5ebSJunchao Zhang 
64416aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6442394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6443394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6444e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6445e8729f6fSJunchao Zhang 
6446e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6447394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6448394ed5ebSJunchao Zhang 
6449394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6450394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6451394ed5ebSJunchao Zhang      will have positive row indices.
6452394ed5ebSJunchao Zhang   */
6453394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
6454394ed5ebSJunchao Zhang     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT;                /* e.g., -2^31, minimal to move them ahead */
6455394ed5ebSJunchao Zhang     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */
6456f7d195e4SLawrence Mitchell     else {
6457f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
6458f7d195e4SLawrence Mitchell       if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */
6459f7d195e4SLawrence Mitchell     }
6460394ed5ebSJunchao Zhang   }
6461394ed5ebSJunchao Zhang 
6462da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64639566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6464651b1cf9SStefano Zampini 
6465651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6466651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64679371c9d4SSatish Balay     if (i1[k] > PETSC_MIN_INT) break;
6468651b1cf9SStefano Zampini   PetscInt i1start = k;
6469651b1cf9SStefano Zampini 
64709566063dSJacob Faibussowitsch   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */
6471394ed5ebSJunchao Zhang   for (; k < rem; k++) i1[k] += PETSC_MAX_INT;                                    /* Revert row indices of local rows*/
6472394ed5ebSJunchao Zhang 
6473394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6474394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6475394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6476394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6477394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6478394ed5ebSJunchao Zhang   const PetscInt *ranges;
6479394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6480394ed5ebSJunchao Zhang 
64819566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64829566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6483394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6484394ed5ebSJunchao Zhang     PetscMPIInt owner;
6485394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6486cbc6b225SStefano Zampini 
6487394ed5ebSJunchao Zhang     /* Locate a row range */
6488394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64899566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6490394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6491394ed5ebSJunchao Zhang 
6492394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
64939566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6494394ed5ebSJunchao Zhang 
6495394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6496394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6497394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6498394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6499394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6500cbc6b225SStefano Zampini 
65019566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
65029566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
65039566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
65049566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6505394ed5ebSJunchao Zhang       sendto   = sendto2;
6506394ed5ebSJunchao Zhang       nentries = nentries2;
6507394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6508394ed5ebSJunchao Zhang     }
6509394ed5ebSJunchao Zhang     sendto[nsend]   = owner;
6510394ed5ebSJunchao Zhang     nentries[nsend] = p - k;
65119566063dSJacob Faibussowitsch     PetscCall(PetscCountCast(p - k, &nentries[nsend]));
6512394ed5ebSJunchao Zhang     nsend++;
6513394ed5ebSJunchao Zhang     k = p;
6514394ed5ebSJunchao Zhang   }
6515394ed5ebSJunchao Zhang 
6516394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6517394ed5ebSJunchao Zhang   PetscSF      sf1;
6518394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6519394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6520394ed5ebSJunchao Zhang   PetscInt    *offsets;
6521394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6522394ed5ebSJunchao Zhang 
65239566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
65249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
65259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6526394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6527394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6528394ed5ebSJunchao Zhang     iremote[k].index = 0;
6529394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
653054c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6531394ed5ebSJunchao Zhang   }
65329566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
65339566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
65349566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
65359566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
653663a3b9bcSJacob Faibussowitsch   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT "", nleaves2, n1 - rem);
6537394ed5ebSJunchao Zhang 
6538394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6539394ed5ebSJunchao Zhang   PetscSF sf2;
6540394ed5ebSJunchao Zhang   nroots  = nroots2;
6541394ed5ebSJunchao Zhang   nleaves = nleaves2;
65429566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
65439566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
65449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6545394ed5ebSJunchao Zhang   p = 0;
6546394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
654754c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6548394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6549394ed5ebSJunchao Zhang       iremote[p].rank  = sendto[k];
6550394ed5ebSJunchao Zhang       iremote[p].index = offsets[k] + q;
6551394ed5ebSJunchao Zhang     }
6552394ed5ebSJunchao Zhang   }
65539566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6554394ed5ebSJunchao Zhang 
6555394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6556394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6557394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
65599566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1 + rem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
65609566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1 + rem, i2, MPI_REPLACE));
65619566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1 + rem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
65629566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1 + rem, j2, MPI_REPLACE));
6563394ed5ebSJunchao Zhang 
65649566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65659566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6566394ed5ebSJunchao Zhang 
6567394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6568394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65699566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6570394ed5ebSJunchao Zhang 
6571651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6572651b1cf9SStefano Zampini   PetscCount *Cperm1;
6573651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6574651b1cf9SStefano Zampini   PetscCall(PetscArraycpy(Cperm1, perm1 + rem, nleaves));
6575651b1cf9SStefano Zampini 
6576651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6577651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6578651b1cf9SStefano Zampini   PetscBool   hypre;
6579651b1cf9SStefano Zampini   const char *name;
6580651b1cf9SStefano Zampini   PetscCall(PetscObjectGetName((PetscObject)mat, &name));
6581651b1cf9SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre));
6582651b1cf9SStefano Zampini   if (hypre) {
6583651b1cf9SStefano Zampini     PetscInt *minj;
6584651b1cf9SStefano Zampini     PetscBT   hasdiag;
6585651b1cf9SStefano Zampini 
6586651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6587651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
6588651b1cf9SStefano Zampini     for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT;
6589651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6590651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6591651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6592651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6593651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6594651b1cf9SStefano Zampini     }
6595651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6596651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6597651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6598651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6599651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6600651b1cf9SStefano Zampini     }
6601651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6602651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6603651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6604651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6605651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6606651b1cf9SStefano Zampini     }
6607651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6608651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6609651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6610651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6611651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6612651b1cf9SStefano Zampini     }
6613651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6614651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6615651b1cf9SStefano Zampini   }
6616651b1cf9SStefano Zampini 
6617651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6618651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6619651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6620651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6621394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6622394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6623394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6624394ed5ebSJunchao Zhang 
6625651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
66269566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6627651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
66289566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6629394ed5ebSJunchao Zhang 
6630394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6631394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6632394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6633394ed5ebSJunchao Zhang 
66349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
66359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
66369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
66379566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6638394ed5ebSJunchao Zhang 
6639394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6640158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6641158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6642158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6643158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6644394ed5ebSJunchao Zhang 
66459566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66469566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6647158ec288SJunchao Zhang 
6648158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6649158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6650158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6651158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6652158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6653158ec288SJunchao Zhang 
6654158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6655158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6656158ec288SJunchao Zhang 
6657158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6658158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6659158ec288SJunchao Zhang 
6660158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6661158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6662158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6663158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66649566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66659566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6666e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66679566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6668394ed5ebSJunchao Zhang 
6669158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6670158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6671158ec288SJunchao Zhang 
6672394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6673394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6674394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66759566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66769566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66779566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6678394ed5ebSJunchao Zhang     Aj = Aj_new;
6679394ed5ebSJunchao Zhang   }
6680394ed5ebSJunchao Zhang 
6681394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6682394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66839566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66849566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66859566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6686394ed5ebSJunchao Zhang     Bj = Bj_new;
6687394ed5ebSJunchao Zhang   }
6688394ed5ebSJunchao Zhang 
6689cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6690394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6691cbc6b225SStefano Zampini   MatType          rtype;
6692394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6693cf8ba265SJunchao Zhang   PetscObjectState state;
66949566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
66959566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6696394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
66979371c9d4SSatish Balay   if (cstart) {
66989371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
66999371c9d4SSatish Balay   }
6700c508b908SBarry Smith 
67019566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6702c508b908SBarry Smith 
6703c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6704c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
67059566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
6706c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6707c508b908SBarry Smith 
6708c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6709c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
67109566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
6711c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6712c508b908SBarry Smith 
67139566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
67145bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6715cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6716cf8ba265SJunchao Zhang   PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6717cbc6b225SStefano Zampini 
6718394ed5ebSJunchao Zhang   a               = (Mat_SeqAIJ *)mpiaij->A->data;
6719394ed5ebSJunchao Zhang   b               = (Mat_SeqAIJ *)mpiaij->B->data;
6720394ed5ebSJunchao Zhang   a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */
6721394ed5ebSJunchao Zhang   a->free_a = b->free_a = PETSC_TRUE;
6722394ed5ebSJunchao Zhang   a->free_ij = b->free_ij = PETSC_TRUE;
6723394ed5ebSJunchao Zhang 
6724cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
67259566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
67269566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
67279566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
67289566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6729cbc6b225SStefano Zampini 
67302c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
67312c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
67322c4ab24aSJunchao Zhang   coo->n       = coo_n;
67332c4ab24aSJunchao Zhang   coo->sf      = sf2;
67342c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
67352c4ab24aSJunchao Zhang   coo->recvlen = nroots;
67362c4ab24aSJunchao Zhang   coo->Annz    = Annz;
67372c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
67382c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
67392c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
67402c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67412c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67422c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67432c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67442c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67452c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67462c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67472c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67482c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67492c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67502c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67512c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67522c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67532c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67542c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67552c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67562c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67572c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67582c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
67592c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ));
67602c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67612c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6763394ed5ebSJunchao Zhang }
6764394ed5ebSJunchao Zhang 
6765d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6766d71ae5a4SJacob Faibussowitsch {
6767394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6768394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6769394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67702c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67712c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67722c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67732c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67742c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67752c4ab24aSJunchao Zhang   PetscContainer       container;
67762c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6777394ed5ebSJunchao Zhang 
6778394ed5ebSJunchao Zhang   PetscFunctionBegin;
67792c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67802c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67812c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67822c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67832c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67842c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67852c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67862c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67872c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67882c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67892c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
67902c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
67912c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
67922c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
67932c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
67942c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
67952c4ab24aSJunchao Zhang 
67969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
67979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6798394ed5ebSJunchao Zhang 
6799394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
68002c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6801394ed5ebSJunchao Zhang 
6802394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
68032c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6804394ed5ebSJunchao Zhang   /* Add local entries to A and B */
68052c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6806da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6807158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6808158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6809394ed5ebSJunchao Zhang   }
68102c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6811158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6812158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6813158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6814394ed5ebSJunchao Zhang   }
68152c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6816394ed5ebSJunchao Zhang 
6817394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
68182c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6819394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6820394ed5ebSJunchao Zhang   }
68212c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6822394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6823394ed5ebSJunchao Zhang   }
68249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
68259566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
68263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6827394ed5ebSJunchao Zhang }
6828394ed5ebSJunchao Zhang 
6829ccd8e176SBarry Smith /*MC
6830ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6831ccd8e176SBarry Smith 
6832ccd8e176SBarry Smith    Options Database Keys:
683311a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6834ccd8e176SBarry Smith 
6835ccd8e176SBarry Smith    Level: beginner
68360cd7f59aSBarry Smith 
68370cd7f59aSBarry Smith    Notes:
68382ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
68390cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
68400cd7f59aSBarry Smith     in the matrix
68410cd7f59aSBarry Smith 
684211a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
684311a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6844ccd8e176SBarry Smith 
68451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6846ccd8e176SBarry Smith M*/
6847d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6848d71ae5a4SJacob Faibussowitsch {
6849ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6850ccd8e176SBarry Smith   PetscMPIInt size;
6851ccd8e176SBarry Smith 
6852ccd8e176SBarry Smith   PetscFunctionBegin;
68539566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68542205254eSKarl Rupp 
68554dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6856ccd8e176SBarry Smith   B->data       = (void *)b;
6857aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6858ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6859ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6860ccd8e176SBarry Smith   b->size       = size;
68612205254eSKarl Rupp 
68629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6863ccd8e176SBarry Smith 
6864ccd8e176SBarry Smith   /* build cache for off array entries formed */
68659566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68662205254eSKarl Rupp 
6867ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6868f4259b30SLisandro Dalcin   b->colmap      = NULL;
6869f4259b30SLisandro Dalcin   b->garray      = NULL;
6870ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6871ccd8e176SBarry Smith 
6872ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68730298fd71SBarry Smith   b->lvec  = NULL;
68740298fd71SBarry Smith   b->Mvctx = NULL;
6875ccd8e176SBarry Smith 
6876ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6877f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6878f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6879ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6880ccd8e176SBarry Smith 
6881f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68820298fd71SBarry Smith   b->spptr = NULL;
6883f60c3dc2SHong Zhang 
68849566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68859566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68869566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68879566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68889566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68899566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
68909566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
68919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
68929566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
68939566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
68943d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
68959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
68963d0639e7SStefano Zampini #endif
6897d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6898d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6899d5e393b6SSuyash Tandon #endif
69003d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
69019566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
69023d0639e7SStefano Zampini #endif
69039779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
69049566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6905191b95cbSRichard Tran Mills #endif
69069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
69079566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
69089566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
69099566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
69105d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
69119566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
69125d7652ecSHong Zhang #endif
6913d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
69149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6915d24d4204SJose E. Roman #endif
69169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
69179566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
69183dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
69199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
69209566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
69213dad0653Sstefano_zampini #endif
69229566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
69239566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
69249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
69259566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
69269566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
69273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6928ccd8e176SBarry Smith }
692981824310SBarry Smith 
6930cce60c4dSBarry Smith /*@C
693111a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
693203bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
693303bfb495SBarry Smith 
6934d083f849SBarry Smith   Collective
693503bfb495SBarry Smith 
693603bfb495SBarry Smith   Input Parameters:
693703bfb495SBarry Smith + comm - MPI communicator
693811a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
693903bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6940*d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
69412ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
69422ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69432ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6944483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
694504ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
694603bfb495SBarry Smith . a    - matrix values
6947483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69482ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
694903bfb495SBarry Smith - oa   - matrix values
695003bfb495SBarry Smith 
695103bfb495SBarry Smith   Output Parameter:
695203bfb495SBarry Smith . mat - the matrix
695303bfb495SBarry Smith 
695403bfb495SBarry Smith   Level: advanced
695503bfb495SBarry Smith 
695603bfb495SBarry Smith   Notes:
69572ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc. The user
6958292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
695903bfb495SBarry Smith 
69602ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
696103bfb495SBarry Smith 
69622ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
696303bfb495SBarry Smith 
69647b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69657b55108eSBarry Smith 
6966dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6967dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6968dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6969dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
697011a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6971dca341c0SJed Brown   communication if it is known that only local entries will be set.
697203bfb495SBarry Smith 
69731cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6974db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69752b26979fSBarry Smith @*/
6976d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6977d71ae5a4SJacob Faibussowitsch {
697803bfb495SBarry Smith   Mat_MPIAIJ *maij;
697903bfb495SBarry Smith 
698003bfb495SBarry Smith   PetscFunctionBegin;
698108401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6982aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6983aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69849566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69859566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69869566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
698703bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69882205254eSKarl Rupp 
69898d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
699003bfb495SBarry Smith 
69919566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
69929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
699303bfb495SBarry Smith 
69949566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
69959566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
699603bfb495SBarry Smith 
69979566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
69989566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
69999566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
70009566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
70019566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
70023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
700303bfb495SBarry Smith }
700403bfb495SBarry Smith 
70054e84afc0SStefano Zampini typedef struct {
70064e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
70074e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
70084e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
70094e84afc0SStefano Zampini 
70104e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
70114e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
70124e84afc0SStefano Zampini   PetscScalar *bufa;
70134e84afc0SStefano Zampini   Mat          P_oth;
70144e84afc0SStefano Zampini 
70154e84afc0SStefano Zampini   /* may take advantage of merging product->B */
7016ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
70174e84afc0SStefano Zampini 
7018ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
70194e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
70204e84afc0SStefano Zampini      of the temporary storage */
70214e84afc0SStefano Zampini   PetscBool reusesym;
70224e84afc0SStefano Zampini 
70234e84afc0SStefano Zampini   /* support for COO values insertion */
7024ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
7025ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
7026ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
7027ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
7028c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
7029c215019aSStefano Zampini   PetscMemType mtype;
70304e84afc0SStefano Zampini 
70314e84afc0SStefano Zampini   /* customization */
70324e84afc0SStefano Zampini   PetscBool abmerge;
7033abb89eb1SStefano Zampini   PetscBool P_oth_bind;
70344e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
70354e84afc0SStefano Zampini 
7036ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
7037d71ae5a4SJacob Faibussowitsch {
70384e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
70394e84afc0SStefano Zampini   PetscInt             i;
70404e84afc0SStefano Zampini 
70414e84afc0SStefano Zampini   PetscFunctionBegin;
70429566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70439566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70449566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70459566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70469566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70479566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70489566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
704948a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70509566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70519566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70529566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70539566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70549566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70559566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70574e84afc0SStefano Zampini }
70584e84afc0SStefano Zampini 
7059fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7060fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7061fff043a9SJunchao Zhang  */
7062d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7063d71ae5a4SJacob Faibussowitsch {
7064c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7065c215019aSStefano Zampini 
7066c215019aSStefano Zampini   PetscFunctionBegin;
70679566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7068c215019aSStefano Zampini   if (f) {
70699566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7070c215019aSStefano Zampini   } else {
7071c215019aSStefano Zampini     const PetscScalar *vv;
7072c215019aSStefano Zampini 
70739566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7074c215019aSStefano Zampini     if (n && idx) {
7075c215019aSStefano Zampini       PetscScalar    *w  = v;
7076c215019aSStefano Zampini       const PetscInt *oi = idx;
7077c215019aSStefano Zampini       PetscInt        j;
7078c215019aSStefano Zampini 
7079c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7080c215019aSStefano Zampini     } else {
70819566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7082c215019aSStefano Zampini     }
70839566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7084c215019aSStefano Zampini   }
70853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7086c215019aSStefano Zampini }
7087c215019aSStefano Zampini 
7088d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7089d71ae5a4SJacob Faibussowitsch {
70904e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
70914e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
70924e84afc0SStefano Zampini 
70934e84afc0SStefano Zampini   PetscFunctionBegin;
70944e84afc0SStefano Zampini   MatCheckProduct(C, 1);
709528b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
70964e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
70974e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
709848a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
709948a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
71004e84afc0SStefano Zampini   }
71014e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7102abb89eb1SStefano Zampini 
7103abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
710408401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
71059566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7106abb89eb1SStefano Zampini   }
71074e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
71084e84afc0SStefano Zampini     PetscInt noff = mmdata->off[i + 1] - mmdata->off[i];
71094e84afc0SStefano Zampini 
71104e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
71114e84afc0SStefano Zampini     if (noff) {
7112c215019aSStefano Zampini       PetscInt nown = mmdata->own[i + 1] - mmdata->own[i];
7113c215019aSStefano Zampini 
71149566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
71159566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
71164e84afc0SStefano Zampini       n_o += noff;
71174e84afc0SStefano Zampini       n_d += nown;
71184e84afc0SStefano Zampini     } else {
7119c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7120c215019aSStefano Zampini 
71219566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
71224e84afc0SStefano Zampini       n_d += mm->nz;
71234e84afc0SStefano Zampini     }
71244e84afc0SStefano Zampini   }
7125c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
71269566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71279566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71284e84afc0SStefano Zampini   }
71299566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
71303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71314e84afc0SStefano Zampini }
71324e84afc0SStefano Zampini 
71334e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
71344e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7135d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7136d71ae5a4SJacob Faibussowitsch {
71374e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7138ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
71394e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
71404e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71414e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71424e84afc0SStefano Zampini   IS                     glob      = NULL;
71434e84afc0SStefano Zampini   const char            *prefix;
71444e84afc0SStefano Zampini   char                   pprefix[256];
71454e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
714682a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
714782a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7148ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7149ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7150ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7151ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7152ddea5d60SJunchao Zhang 
71534e84afc0SStefano Zampini   MatProductType ptype;
7154d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71554e84afc0SStefano Zampini   PetscMPIInt    size;
71564e84afc0SStefano Zampini 
71574e84afc0SStefano Zampini   PetscFunctionBegin;
71584e84afc0SStefano Zampini   MatCheckProduct(C, 1);
715928b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71604e84afc0SStefano Zampini   ptype = product->type;
7161b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7162fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7163fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7164fa046f9fSJunchao Zhang   }
71654e84afc0SStefano Zampini   switch (ptype) {
71664e84afc0SStefano Zampini   case MATPRODUCT_AB:
71674e84afc0SStefano Zampini     A          = product->A;
71684e84afc0SStefano Zampini     P          = product->B;
71694e84afc0SStefano Zampini     m          = A->rmap->n;
71704e84afc0SStefano Zampini     n          = P->cmap->n;
71714e84afc0SStefano Zampini     M          = A->rmap->N;
71724e84afc0SStefano Zampini     N          = P->cmap->N;
7173ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71744e84afc0SStefano Zampini     break;
71754e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71764e84afc0SStefano Zampini     P          = product->A;
71774e84afc0SStefano Zampini     A          = product->B;
71784e84afc0SStefano Zampini     m          = P->cmap->n;
71794e84afc0SStefano Zampini     n          = A->cmap->n;
71804e84afc0SStefano Zampini     M          = P->cmap->N;
71814e84afc0SStefano Zampini     N          = A->cmap->N;
71824e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71834e84afc0SStefano Zampini     break;
71844e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71854e84afc0SStefano Zampini     A          = product->A;
71864e84afc0SStefano Zampini     P          = product->B;
71874e84afc0SStefano Zampini     m          = P->cmap->n;
71884e84afc0SStefano Zampini     n          = P->cmap->n;
71894e84afc0SStefano Zampini     M          = P->cmap->N;
71904e84afc0SStefano Zampini     N          = P->cmap->N;
71914e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71924e84afc0SStefano Zampini     break;
7193d71ae5a4SJacob Faibussowitsch   default:
7194d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
71954e84afc0SStefano Zampini   }
71969566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
71974e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
71984e84afc0SStefano Zampini 
71994e84afc0SStefano Zampini   /* defaults */
72004e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
72014e84afc0SStefano Zampini     mp[i]    = NULL;
72024e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
72034e84afc0SStefano Zampini     rmapt[i] = -1;
72044e84afc0SStefano Zampini     cmapt[i] = -1;
72054e84afc0SStefano Zampini     rmapa[i] = NULL;
72064e84afc0SStefano Zampini     cmapa[i] = NULL;
72074e84afc0SStefano Zampini   }
72084e84afc0SStefano Zampini 
72094e84afc0SStefano Zampini   /* customization */
72109566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
72114e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
72124e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
72134e84afc0SStefano Zampini     if (product->api_user) {
7214d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
72159566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72169566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7217d0609cedSBarry Smith       PetscOptionsEnd();
72184e84afc0SStefano Zampini     } else {
7219d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
72209566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72219566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7222d0609cedSBarry Smith       PetscOptionsEnd();
7223abb89eb1SStefano Zampini     }
7224abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7225abb89eb1SStefano Zampini     if (product->api_user) {
7226d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
72279566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7228d0609cedSBarry Smith       PetscOptionsEnd();
7229abb89eb1SStefano Zampini     } else {
7230d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
72319566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7232d0609cedSBarry Smith       PetscOptionsEnd();
72334e84afc0SStefano Zampini     }
72344e84afc0SStefano Zampini   }
72354e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
72364e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
72379566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
72389566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
72399566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
72409566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72419566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7242ddea5d60SJunchao Zhang 
7243ddea5d60SJunchao Zhang   cp = 0;
72444e84afc0SStefano Zampini   switch (ptype) {
72454e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72469566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72474e84afc0SStefano Zampini 
7248ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7249ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72504e84afc0SStefano Zampini       /* P is product->B */
72519566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72529566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72539566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72549566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72559566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72569566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72579566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72584e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72599566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72609566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72619566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72624e84afc0SStefano Zampini       rmapt[cp] = 1;
72634e84afc0SStefano Zampini       cmapt[cp] = 2;
72644e84afc0SStefano Zampini       cmapa[cp] = globidx;
72654e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72664e84afc0SStefano Zampini       cp++;
7267ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72689566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72699566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72709566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72719566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72729566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72739566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72744e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72759566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72769566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72774e84afc0SStefano Zampini       rmapt[cp] = 1;
72784e84afc0SStefano Zampini       cmapt[cp] = 1;
72794e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72804e84afc0SStefano Zampini       cp++;
72819566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72829566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72839566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72849566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72859566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72869566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72874e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72889566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72899566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72904e84afc0SStefano Zampini       rmapt[cp] = 1;
72914e84afc0SStefano Zampini       cmapt[cp] = 2;
72924e84afc0SStefano Zampini       cmapa[cp] = p->garray;
72934e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72944e84afc0SStefano Zampini       cp++;
72954e84afc0SStefano Zampini     }
7296ddea5d60SJunchao Zhang 
7297ddea5d60SJunchao Zhang     /* A_off * P_other */
72984e84afc0SStefano Zampini     if (mmdata->P_oth) {
72999566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
73009566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
73019566063dSJacob Faibussowitsch       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name));
73029566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73039566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73049566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73059566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73069566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73079566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73089566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73094e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73109566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73119566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73124e84afc0SStefano Zampini       rmapt[cp] = 1;
73134e84afc0SStefano Zampini       cmapt[cp] = 2;
73144e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73154e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73164e84afc0SStefano Zampini       cp++;
73174e84afc0SStefano Zampini     }
73184e84afc0SStefano Zampini     break;
7319ddea5d60SJunchao Zhang 
73204e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
73214e84afc0SStefano Zampini     /* A is product->B */
73229566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7323ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
73249566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
73259566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73269566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73279566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73289566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73299566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73304e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73319566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73329566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73339566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73344e84afc0SStefano Zampini       rmapt[cp] = 2;
73354e84afc0SStefano Zampini       rmapa[cp] = globidx;
73364e84afc0SStefano Zampini       cmapt[cp] = 2;
73374e84afc0SStefano Zampini       cmapa[cp] = globidx;
73384e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73394e84afc0SStefano Zampini       cp++;
73404e84afc0SStefano Zampini     } else {
73419566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73429566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73439566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73449566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73459566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73469566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73474e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73489566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73499566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73509566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73514e84afc0SStefano Zampini       rmapt[cp] = 1;
73524e84afc0SStefano Zampini       cmapt[cp] = 2;
73534e84afc0SStefano Zampini       cmapa[cp] = globidx;
73544e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73554e84afc0SStefano Zampini       cp++;
73569566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73579566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73589566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73599566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73609566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73619566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73624e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73639566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73649566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73654e84afc0SStefano Zampini       rmapt[cp] = 2;
73664e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73674e84afc0SStefano Zampini       cmapt[cp] = 2;
73684e84afc0SStefano Zampini       cmapa[cp] = globidx;
73694e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73704e84afc0SStefano Zampini       cp++;
73714e84afc0SStefano Zampini     }
73724e84afc0SStefano Zampini     break;
73734e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73749566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73754e84afc0SStefano Zampini     /* P is product->B */
73769566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73779566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73789566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73799566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73809566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73819566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73829566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73834e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73849566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73859566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73869566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73874e84afc0SStefano Zampini     rmapt[cp] = 2;
73884e84afc0SStefano Zampini     rmapa[cp] = globidx;
73894e84afc0SStefano Zampini     cmapt[cp] = 2;
73904e84afc0SStefano Zampini     cmapa[cp] = globidx;
73914e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
73924e84afc0SStefano Zampini     cp++;
73934e84afc0SStefano Zampini     if (mmdata->P_oth) {
73949566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
73959566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
73969566063dSJacob Faibussowitsch       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name));
73979566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73989566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73999566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
74009566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74019566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74029566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74039566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74044e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74059566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74069566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74074e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
74084e84afc0SStefano Zampini       cp++;
74099566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
74109566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
74119566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74129566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74139566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74149566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74154e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74169566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74179566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74184e84afc0SStefano Zampini       rmapt[cp] = 2;
74194e84afc0SStefano Zampini       rmapa[cp] = globidx;
74204e84afc0SStefano Zampini       cmapt[cp] = 2;
74214e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
74224e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74234e84afc0SStefano Zampini       cp++;
74244e84afc0SStefano Zampini     }
74254e84afc0SStefano Zampini     break;
7426d71ae5a4SJacob Faibussowitsch   default:
7427d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
74284e84afc0SStefano Zampini   }
74294e84afc0SStefano Zampini   /* sanity check */
74309371c9d4SSatish Balay   if (size > 1)
74319371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
74324e84afc0SStefano Zampini 
74339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7434ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7435ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7436ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7437ddea5d60SJunchao Zhang   }
74384e84afc0SStefano Zampini   mmdata->cp             = cp;
74394e84afc0SStefano Zampini   C->product->data       = mmdata;
74404e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74414e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74424e84afc0SStefano Zampini 
7443c215019aSStefano Zampini   /* memory type */
7444c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74459566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7446d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74479566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7448c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7449d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74503214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7451c215019aSStefano Zampini 
74524e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7453ddea5d60SJunchao Zhang 
7454ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7455ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7456ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7457ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7458ddea5d60SJunchao Zhang   */
74594e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74604e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74614e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7462ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74634e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74644e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74654e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74664e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74674e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74684e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74694e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74704e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7471ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7472ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74734e84afc0SStefano Zampini       }
74744e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74754e84afc0SStefano Zampini   }
7476ddea5d60SJunchao Zhang 
7477ddea5d60SJunchao Zhang   /*
7478ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7479ddea5d60SJunchao Zhang 
7480ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7481ddea5d60SJunchao Zhang 
7482d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7483ddea5d60SJunchao Zhang 
7484ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7485ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7486ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7487ddea5d60SJunchao Zhang 
7488ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7489da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7490ddea5d60SJunchao Zhang   */
74919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
74929566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7493ddea5d60SJunchao Zhang 
7494ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7495ddea5d60SJunchao Zhang   if (hasoffproc) {
74964e84afc0SStefano Zampini     PetscSF  msf;
74974e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
74984e84afc0SStefano Zampini 
74999566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
75009566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
75019566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7502ddea5d60SJunchao Zhang 
75034e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
75044e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
75054e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
75064e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7507ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
75084e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
75094e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
75104e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
75114e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
75124e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
75134e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
75144e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
75154e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
75164e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
75174e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
75184e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
75194e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
75204e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7521ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
75224e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
75234e84afc0SStefano Zampini               *coi++    = gr;
75244e84afc0SStefano Zampini               *idxoff++ = j;
75254e84afc0SStefano Zampini             }
75264e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
75274e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
75284e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75294e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
75304e84afc0SStefano Zampini             } else { /* offdiag */
75314e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75324e84afc0SStefano Zampini             }
75334e84afc0SStefano Zampini             ncoo_o += nz;
7534ddea5d60SJunchao Zhang           } else { /* this is a local row */
75354e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
75364e84afc0SStefano Zampini           }
75374e84afc0SStefano Zampini         }
75384e84afc0SStefano Zampini       }
75394e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
75404e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75414e84afc0SStefano Zampini     }
75424e84afc0SStefano Zampini 
75439566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75449566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75459566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75469566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75474e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75489566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75499566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75509566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75519566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75529566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75539566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7554ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75559566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75564e84afc0SStefano Zampini     coo_i = coo_i2;
75574e84afc0SStefano Zampini     coo_j = coo_j2;
75584e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75594e84afc0SStefano Zampini     ncoo = ncoo_d;
75609566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7561c215019aSStefano Zampini 
75629566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75639566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75649566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75654e84afc0SStefano Zampini   }
7566c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75674e84afc0SStefano Zampini 
7568ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75694e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75704e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75714e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75724e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75734e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75744e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75754e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75764e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75774e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75784e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75794e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75804e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75814e84afc0SStefano Zampini 
75824e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7583ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7584ddea5d60SJunchao Zhang       /* fill coo_i */
75854e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75864e84afc0SStefano Zampini         const PetscInt gr = i + rs;
75874e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
75884e84afc0SStefano Zampini       }
7589ddea5d60SJunchao Zhang       /* fill coo_j */
7590ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
75919566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7592ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7593ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7594ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
75954e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
75964e84afc0SStefano Zampini       }
75974e84afc0SStefano Zampini       ncoo_d += mm->nz;
7598ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
75994e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
76004e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
76014e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
76024e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7603ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
76044e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7605ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
76064e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
76074e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
76084e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7609ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
76104e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
76114e84afc0SStefano Zampini           }
76124e84afc0SStefano Zampini           ncoo_d += nz;
76134e84afc0SStefano Zampini         }
76144e84afc0SStefano Zampini       }
76154e84afc0SStefano Zampini     }
76164e84afc0SStefano Zampini   }
761748a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
76189566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
761948a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
76209566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7621ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
76229566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
76234e84afc0SStefano Zampini 
76244e84afc0SStefano Zampini   /* preallocate with COO data */
76259566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76269566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76284e84afc0SStefano Zampini }
76294e84afc0SStefano Zampini 
7630d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7631d71ae5a4SJacob Faibussowitsch {
76324e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76334e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76344e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7635abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76364e84afc0SStefano Zampini #else
76374e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76384e84afc0SStefano Zampini #endif
76394e84afc0SStefano Zampini 
76404e84afc0SStefano Zampini   PetscFunctionBegin;
76414e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76424e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
764348a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
764465e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7645abb89eb1SStefano Zampini     switch (product->type) {
7646abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7647abb89eb1SStefano Zampini       if (product->api_user) {
7648d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76499566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7650d0609cedSBarry Smith         PetscOptionsEnd();
7651abb89eb1SStefano Zampini       } else {
7652d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76539566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7654d0609cedSBarry Smith         PetscOptionsEnd();
7655abb89eb1SStefano Zampini       }
7656abb89eb1SStefano Zampini       break;
7657abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7658abb89eb1SStefano Zampini       if (product->api_user) {
7659d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76609566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7661d0609cedSBarry Smith         PetscOptionsEnd();
7662abb89eb1SStefano Zampini       } else {
7663d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76649566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7665d0609cedSBarry Smith         PetscOptionsEnd();
7666abb89eb1SStefano Zampini       }
7667abb89eb1SStefano Zampini       break;
7668abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7669abb89eb1SStefano Zampini       if (product->api_user) {
7670d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76719566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7672d0609cedSBarry Smith         PetscOptionsEnd();
7673abb89eb1SStefano Zampini       } else {
7674d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76759566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7676d0609cedSBarry Smith         PetscOptionsEnd();
7677abb89eb1SStefano Zampini       }
7678abb89eb1SStefano Zampini       break;
7679d71ae5a4SJacob Faibussowitsch     default:
7680d71ae5a4SJacob Faibussowitsch       break;
7681abb89eb1SStefano Zampini     }
7682abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7683abb89eb1SStefano Zampini   }
76844e84afc0SStefano Zampini #endif
76854e84afc0SStefano Zampini   if (match) {
76864e84afc0SStefano Zampini     switch (product->type) {
76874e84afc0SStefano Zampini     case MATPRODUCT_AB:
76884e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7689d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7690d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7691d71ae5a4SJacob Faibussowitsch       break;
7692d71ae5a4SJacob Faibussowitsch     default:
7693d71ae5a4SJacob Faibussowitsch       break;
76944e84afc0SStefano Zampini     }
76954e84afc0SStefano Zampini   }
76964e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
76979566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
76983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
769981824310SBarry Smith }
770098921bdaSJacob Faibussowitsch 
770198921bdaSJacob Faibussowitsch /*
770272833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
770372833a62Smarkadams4 
770472833a62Smarkadams4    n - the number of block indices in cc[]
770572833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
770672833a62Smarkadams4 */
7707d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7708d71ae5a4SJacob Faibussowitsch {
770972833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
771072833a62Smarkadams4   const PetscInt *idx;
771172833a62Smarkadams4 
771272833a62Smarkadams4   PetscFunctionBegin;
771372833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
771472833a62Smarkadams4   if (nidx) {
771572833a62Smarkadams4     cnt     = 0;
771672833a62Smarkadams4     cc[cnt] = idx[0] / bs;
771772833a62Smarkadams4     for (j = 1; j < nidx; j++) {
771872833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
771972833a62Smarkadams4     }
772072833a62Smarkadams4   }
772172833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
772272833a62Smarkadams4   *n = cnt + 1;
77233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
772472833a62Smarkadams4 }
772572833a62Smarkadams4 
772672833a62Smarkadams4 /*
772772833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
772872833a62Smarkadams4 
772972833a62Smarkadams4     ncollapsed - the number of block indices
773072833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
773172833a62Smarkadams4 */
7732d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7733d71ae5a4SJacob Faibussowitsch {
773472833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
773572833a62Smarkadams4 
773672833a62Smarkadams4   PetscFunctionBegin;
773772833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
773872833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
773972833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
774072833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77419371c9d4SSatish Balay     cprevtmp = cprev;
77429371c9d4SSatish Balay     cprev    = merged;
77439371c9d4SSatish Balay     merged   = cprevtmp;
774472833a62Smarkadams4   }
774572833a62Smarkadams4   *ncollapsed = nprev;
774672833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
774872833a62Smarkadams4 }
774972833a62Smarkadams4 
77502d776b49SBarry Smith /*
775172833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
775272833a62Smarkadams4 
775372833a62Smarkadams4  Input Parameter:
775472833a62Smarkadams4  . Amat - matrix
775572833a62Smarkadams4  - symmetrize - make the result symmetric
775672833a62Smarkadams4  + scale - scale with diagonal
775772833a62Smarkadams4 
775872833a62Smarkadams4  Output Parameter:
775972833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
776072833a62Smarkadams4 
776172833a62Smarkadams4 */
7762e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7763d71ae5a4SJacob Faibussowitsch {
776472833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
776572833a62Smarkadams4   MPI_Comm  comm;
776672833a62Smarkadams4   Mat       Gmat;
776772833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
776872833a62Smarkadams4   Mat       a, b, c;
776972833a62Smarkadams4   MatType   jtype;
777072833a62Smarkadams4 
777172833a62Smarkadams4   PetscFunctionBegin;
777272833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
777372833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
777472833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
777572833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
777672833a62Smarkadams4   nloc = (Iend - Istart) / bs;
777772833a62Smarkadams4 
777872833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
777972833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
778072833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
778172833a62Smarkadams4 
778272833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
778372833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
778472833a62Smarkadams4      implementation */
778572833a62Smarkadams4   if (bs > 1) {
778672833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
778772833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
778872833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
778972833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
779072833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
779172833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
779272833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
77932cf69117Smarkadams4       MatScalar *aa, val, *AA;
77942cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
77959371c9d4SSatish Balay       if (isseqaij) {
77969371c9d4SSatish Balay         a = Amat;
77979371c9d4SSatish Balay         b = NULL;
77989371c9d4SSatish Balay       } else {
779972833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
78009371c9d4SSatish Balay         a             = d->A;
78019371c9d4SSatish Balay         b             = d->B;
780272833a62Smarkadams4       }
780372833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
780472833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
780572833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
78062cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
780759ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
780859ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
780959ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
781059ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
781159ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
781272833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
781359ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
781459ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
781559ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
781659ee9f9fSPierre Jolivet             else {
781759ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
781859ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
781959ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
782072833a62Smarkadams4               }
782159ee9f9fSPierre Jolivet             }
782259ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
782359ee9f9fSPierre Jolivet           }
782459ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
782572833a62Smarkadams4           if (!ok) {
782672833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
782759ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
782872833a62Smarkadams4             goto old_bs;
782972833a62Smarkadams4           }
783072833a62Smarkadams4         }
783172833a62Smarkadams4       }
783272833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
783372833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
783472833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78352cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
783672833a62Smarkadams4       // diag
783772833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
783872833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
783972833a62Smarkadams4         ai               = aseq->i;
784072833a62Smarkadams4         n                = ai[brow + 1] - ai[brow];
784172833a62Smarkadams4         aj               = aseq->j + ai[brow];
784272833a62Smarkadams4         for (int k = 0; k < n; k += bs) {        // block columns
784372833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
784472833a62Smarkadams4           val        = 0;
7845e02fb3cdSMark Adams           if (index_size == 0) {
784672833a62Smarkadams4             for (int ii = 0; ii < bs; ii++) { // rows in block
784772833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
784872833a62Smarkadams4               for (int jj = 0; jj < bs; jj++) {         // columns in block
784972833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
785072833a62Smarkadams4               }
785172833a62Smarkadams4             }
7852e02fb3cdSMark Adams           } else {                                       // use (index,index) value if provided
7853e02fb3cdSMark Adams             for (int iii = 0; iii < index_size; iii++) { // rows in block
7854e02fb3cdSMark Adams               int ii = index[iii];
7855e02fb3cdSMark Adams               aa     = aseq->a + ai[brow + ii] + k;
7856e02fb3cdSMark Adams               for (int jjj = 0; jjj < index_size; jjj++) { // columns in block
7857e02fb3cdSMark Adams                 int jj = index[jjj];
7858cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7859e02fb3cdSMark Adams               }
7860e02fb3cdSMark Adams             }
7861e02fb3cdSMark Adams           }
786259ee9f9fSPierre Jolivet           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
786372833a62Smarkadams4           AA[k / bs] = val;
786472833a62Smarkadams4         }
786572833a62Smarkadams4         grow = Istart / bs + brow / bs;
786672833a62Smarkadams4         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, INSERT_VALUES));
786772833a62Smarkadams4       }
786872833a62Smarkadams4       // off-diag
786972833a62Smarkadams4       if (ismpiaij) {
787072833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
787172833a62Smarkadams4         const PetscScalar *vals;
787272833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
787372833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
787472833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
787572833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
787672833a62Smarkadams4           for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
787759ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
787872833a62Smarkadams4             AA[k / bs] = 0;
787972833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
788072833a62Smarkadams4           }
788172833a62Smarkadams4           nc = ncols / bs;
788272833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7883e02fb3cdSMark Adams           if (index_size == 0) {
788472833a62Smarkadams4             for (int ii = 0; ii < bs; ii++) { // rows in block
788572833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
788672833a62Smarkadams4               for (int k = 0; k < ncols; k += bs) {
788772833a62Smarkadams4                 for (int jj = 0; jj < bs; jj++) { // cols in block
788859ee9f9fSPierre Jolivet                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
788972833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
789072833a62Smarkadams4                 }
789172833a62Smarkadams4               }
789272833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
789372833a62Smarkadams4             }
7894e02fb3cdSMark Adams           } else {                                       // use (index,index) value if provided
7895e02fb3cdSMark Adams             for (int iii = 0; iii < index_size; iii++) { // rows in block
7896e02fb3cdSMark Adams               int ii = index[iii];
7897e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
7898e02fb3cdSMark Adams               for (int k = 0; k < ncols; k += bs) {
7899e02fb3cdSMark Adams                 for (int jjj = 0; jjj < index_size; jjj++) { // cols in block
7900e02fb3cdSMark Adams                   int jj = index[jjj];
7901e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7902e02fb3cdSMark Adams                 }
7903e02fb3cdSMark Adams               }
7904e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7905e02fb3cdSMark Adams             }
7906e02fb3cdSMark Adams           }
790772833a62Smarkadams4           grow = Istart / bs + brow / bs;
790872833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, INSERT_VALUES));
790972833a62Smarkadams4         }
791072833a62Smarkadams4       }
791172833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
791272833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79132cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
791472833a62Smarkadams4     } else {
791572833a62Smarkadams4       const PetscScalar *vals;
791672833a62Smarkadams4       const PetscInt    *idx;
791772833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
791872833a62Smarkadams4     old_bs:
791972833a62Smarkadams4       /*
792072833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
792172833a62Smarkadams4        */
792272833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
792372833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
792472833a62Smarkadams4       if (isseqaij) {
792572833a62Smarkadams4         PetscInt max_d_nnz;
792672833a62Smarkadams4         /*
792772833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
792872833a62Smarkadams4          */
792972833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
793072833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
793172833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
793248a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
793372833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
793472833a62Smarkadams4       } else if (ismpiaij) {
793572833a62Smarkadams4         Mat             Daij, Oaij;
793672833a62Smarkadams4         const PetscInt *garray;
793772833a62Smarkadams4         PetscInt        max_d_nnz;
793872833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
793972833a62Smarkadams4         /*
794072833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
794172833a62Smarkadams4          */
794272833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
794372833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
794472833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
794548a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
794672833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
794772833a62Smarkadams4         /*
794872833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
794972833a62Smarkadams4          */
795072833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
795172833a62Smarkadams4           o_nnz[jj] = 0;
795272833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
795372833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
795472833a62Smarkadams4             o_nnz[jj] += ncols;
795572833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
795672833a62Smarkadams4           }
795772833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
795872833a62Smarkadams4         }
795972833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
796072833a62Smarkadams4       /* get scalar copy (norms) of matrix */
796172833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
796272833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
796372833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
796472833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
796572833a62Smarkadams4         PetscInt dest_row = Ii / bs;
796672833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
796772833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
796872833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
796972833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
797072833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
797172833a62Smarkadams4         }
797272833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
797372833a62Smarkadams4       }
797472833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
797572833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
797672833a62Smarkadams4     }
797772833a62Smarkadams4   } else {
79782d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
79792d776b49SBarry Smith     else {
79802d776b49SBarry Smith       Gmat = Amat;
79812d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
79822d776b49SBarry Smith     }
79839371c9d4SSatish Balay     if (isseqaij) {
79849371c9d4SSatish Balay       a = Gmat;
79859371c9d4SSatish Balay       b = NULL;
79869371c9d4SSatish Balay     } else {
798772833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
79889371c9d4SSatish Balay       a             = d->A;
79899371c9d4SSatish Balay       b             = d->B;
799072833a62Smarkadams4     }
79912d776b49SBarry Smith     if (filter >= 0 || scale) {
79922d776b49SBarry Smith       /* take absolute value of each entry */
799372833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
799472833a62Smarkadams4         MatInfo      info;
799572833a62Smarkadams4         PetscScalar *avals;
799672833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
799772833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
799872833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
799972833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
800072833a62Smarkadams4       }
800172833a62Smarkadams4     }
80022d776b49SBarry Smith   }
800372833a62Smarkadams4   if (symmetrize) {
8004b94d7dedSBarry Smith     PetscBool isset, issym;
8005b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
8006b94d7dedSBarry Smith     if (!isset || !issym) {
800772833a62Smarkadams4       Mat matTrans;
800872833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
80091fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
801072833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
801172833a62Smarkadams4     }
801272833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80132d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
801472833a62Smarkadams4   if (scale) {
801572833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
801672833a62Smarkadams4     Vec diag;
801772833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
801872833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
801972833a62Smarkadams4     PetscCall(VecReciprocal(diag));
802072833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
802172833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
802272833a62Smarkadams4     PetscCall(VecDestroy(&diag));
802372833a62Smarkadams4   }
802472833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80252d776b49SBarry Smith 
80262d776b49SBarry Smith   if (filter >= 0) {
80272ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80282ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80292d776b49SBarry Smith   }
803072833a62Smarkadams4   *a_Gmat = Gmat;
80313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
803272833a62Smarkadams4 }
803372833a62Smarkadams4 
803472833a62Smarkadams4 /*
803598921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
803698921bdaSJacob Faibussowitsch */
803798921bdaSJacob Faibussowitsch #include <petsc/private/fortranimpl.h>
803898921bdaSJacob Faibussowitsch 
803998921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80409566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80419566063dSJacob Faibussowitsch #undef PetscCall
80429371c9d4SSatish Balay #define PetscCall(...) \
80439371c9d4SSatish Balay   do { \
80445f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
804598921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
804698921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
804798921bdaSJacob Faibussowitsch       return; \
804898921bdaSJacob Faibussowitsch     } \
804998921bdaSJacob Faibussowitsch   } while (0)
805098921bdaSJacob Faibussowitsch 
805198921bdaSJacob Faibussowitsch #undef SETERRQ
80529371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80539371c9d4SSatish Balay   do { \
805498921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
805598921bdaSJacob Faibussowitsch     return; \
805698921bdaSJacob Faibussowitsch   } while (0)
805798921bdaSJacob Faibussowitsch 
805898921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
805998921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
806098921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
806198921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
806298921bdaSJacob Faibussowitsch #else
806398921bdaSJacob Faibussowitsch #endif
8064d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8065d71ae5a4SJacob Faibussowitsch {
806698921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
806798921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
806898921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
806998921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
807098921bdaSJacob Faibussowitsch   PetscScalar value;
807198921bdaSJacob Faibussowitsch 
807298921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
807398921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80745f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
807598921bdaSJacob Faibussowitsch   {
807698921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
807798921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
807898921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
807998921bdaSJacob Faibussowitsch 
808098921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
808198921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
808298921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
808398921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
808498921bdaSJacob Faibussowitsch     MatScalar  *aa;
808598921bdaSJacob Faibussowitsch     PetscBool   ignorezeroentries = (((a->ignorezeroentries) && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
808698921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
808798921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
808898921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
808998921bdaSJacob Faibussowitsch     MatScalar  *ba;
809098921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
809198921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
809298921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
809398921bdaSJacob Faibussowitsch 
809498921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
809598921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
809698921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
809798921bdaSJacob Faibussowitsch 
809898921bdaSJacob Faibussowitsch     PetscFunctionBegin;
80999566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
81009566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
810198921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
810298921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
81036bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
810498921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
810598921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
810698921bdaSJacob Faibussowitsch         lastcol1 = -1;
810798921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
810898921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
810998921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
811098921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
811198921bdaSJacob Faibussowitsch         low1     = 0;
811298921bdaSJacob Faibussowitsch         high1    = nrow1;
811398921bdaSJacob Faibussowitsch         lastcol2 = -1;
811498921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
811598921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
811698921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
811798921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
811898921bdaSJacob Faibussowitsch         low2     = 0;
811998921bdaSJacob Faibussowitsch         high2    = nrow2;
812098921bdaSJacob Faibussowitsch 
812198921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
812298921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
812398921bdaSJacob Faibussowitsch           else value = v[i + j * m];
812498921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
812598921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
812698921bdaSJacob Faibussowitsch             col = in[j] - cstart;
812798921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
812898921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
812998921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
813063a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
813198921bdaSJacob Faibussowitsch           } else {
813298921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
813348a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
813498921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8135eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
813698921bdaSJacob Faibussowitsch               col--;
813798921bdaSJacob Faibussowitsch #else
813898921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
813998921bdaSJacob Faibussowitsch #endif
814098921bdaSJacob Faibussowitsch               if (col < 0 && !((Mat_SeqAIJ *)(aij->A->data))->nonew) {
81419566063dSJacob Faibussowitsch                 PetscCall(MatDisAssemble_MPIAIJ(mat));
814298921bdaSJacob Faibussowitsch                 col = in[j];
814398921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
814498921bdaSJacob Faibussowitsch                 B        = aij->B;
814598921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81469371c9d4SSatish Balay                 bimax    = b->imax;
81479371c9d4SSatish Balay                 bi       = b->i;
81489371c9d4SSatish Balay                 bilen    = b->ilen;
81499371c9d4SSatish Balay                 bj       = b->j;
815098921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
815198921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
815298921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
815398921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
815498921bdaSJacob Faibussowitsch                 low2     = 0;
815598921bdaSJacob Faibussowitsch                 high2    = nrow2;
815698921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
815798921bdaSJacob Faibussowitsch                 ba       = b->a;
815898921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
815998921bdaSJacob Faibussowitsch               }
816098921bdaSJacob Faibussowitsch             } else col = in[j];
816198921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
816298921bdaSJacob Faibussowitsch           }
816398921bdaSJacob Faibussowitsch         }
816498921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
816598921bdaSJacob Faibussowitsch         if (roworiented) {
81669566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
816798921bdaSJacob Faibussowitsch         } else {
81689566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
816998921bdaSJacob Faibussowitsch         }
817098921bdaSJacob Faibussowitsch       }
817198921bdaSJacob Faibussowitsch     }
81729566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81739566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
817498921bdaSJacob Faibussowitsch   }
817598921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
817698921bdaSJacob Faibussowitsch }
817772833a62Smarkadams4 
817898921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
817998921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
818098921bdaSJacob Faibussowitsch  * original definitions */
81819566063dSJacob Faibussowitsch #undef PetscCall
818298921bdaSJacob Faibussowitsch #undef SETERRQ
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