1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 1026cec326SBarry Smith { 1126cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1226cec326SBarry Smith 1326cec326SBarry Smith PetscFunctionBegin; 1426cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1526cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1626cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 1726cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 1826cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2026cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2126cec326SBarry Smith #else 2226cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 2326cec326SBarry Smith #endif 2426cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 2526cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 2626cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 2726cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 2826cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 2926cec326SBarry Smith 3026cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3126cec326SBarry Smith 3226cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 3326cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 3426cec326SBarry Smith 3526cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 4126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 4326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 4726cec326SBarry Smith #endif 4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 4926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 5026cec326SBarry Smith #endif 5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 5226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 5326cec326SBarry Smith #endif 5426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 5726cec326SBarry Smith #endif 5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 6026cec326SBarry Smith #endif 6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 6226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 6326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 6426cec326SBarry Smith #endif 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 6926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 7326cec326SBarry Smith #endif 7426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 7626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 7726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 7926cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 8026cec326SBarry Smith } 8126cec326SBarry Smith 8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 8326cec326SBarry Smith #define TYPE AIJ 8426cec326SBarry Smith #define TYPE_AIJ 8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 8626cec326SBarry Smith #undef TYPE 8726cec326SBarry Smith #undef TYPE_AIJ 8826cec326SBarry Smith 89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 90d71ae5a4SJacob Faibussowitsch { 918a9c020eSBarry Smith Mat B; 928a9c020eSBarry Smith 938a9c020eSBarry Smith PetscFunctionBegin; 948a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 958a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 968a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 97501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 998a9c020eSBarry Smith } 1008a9c020eSBarry Smith 101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 102d71ae5a4SJacob Faibussowitsch { 1038a9c020eSBarry Smith Mat B; 1048a9c020eSBarry Smith 1058a9c020eSBarry Smith PetscFunctionBegin; 1068a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1078a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 108501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1108a9c020eSBarry Smith } 1118a9c020eSBarry Smith 11201bebe75SBarry Smith /*MC 11301bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 11401bebe75SBarry Smith 11511a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 11611a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 11711a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 11801bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 11901bebe75SBarry Smith the above preallocation routines for simplicity. 12001bebe75SBarry Smith 12127430b45SBarry Smith Options Database Key: 12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 12301bebe75SBarry Smith 12411a5261eSBarry Smith Developer Note: 1252ef1f0ffSBarry Smith Level: beginner 1262ef1f0ffSBarry Smith 12711a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 12801bebe75SBarry Smith enough exist. 12901bebe75SBarry Smith 1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 13101bebe75SBarry Smith M*/ 13201bebe75SBarry Smith 13301bebe75SBarry Smith /*MC 13401bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 13501bebe75SBarry Smith 13611a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 13711a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 13811a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 13901bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14001bebe75SBarry Smith the above preallocation routines for simplicity. 14101bebe75SBarry Smith 14227430b45SBarry Smith Options Database Key: 14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 14401bebe75SBarry Smith 14501bebe75SBarry Smith Level: beginner 14601bebe75SBarry Smith 1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 14801bebe75SBarry Smith M*/ 14901bebe75SBarry Smith 150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 151d71ae5a4SJacob Faibussowitsch { 152f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 153f74ef234SStefano Zampini 154f74ef234SStefano Zampini PetscFunctionBegin; 155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 156b470e4b4SRichard Tran Mills A->boundtocpu = flg; 157f74ef234SStefano Zampini #endif 1581baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1591baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1603120d049SRichard Tran Mills 1613120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1623120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1633120d049SRichard Tran Mills * to differ from the parent matrix. */ 1641baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1651baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1663120d049SRichard Tran Mills 1673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 168f74ef234SStefano Zampini } 169f74ef234SStefano Zampini 170ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 171d71ae5a4SJacob Faibussowitsch { 17226bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 17326bda2c4Sstefano_zampini 17426bda2c4Sstefano_zampini PetscFunctionBegin; 17546533700Sstefano_zampini if (mat->A) { 1769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1779566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 17846533700Sstefano_zampini } 1793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18026bda2c4Sstefano_zampini } 18126bda2c4Sstefano_zampini 182ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 183d71ae5a4SJacob Faibussowitsch { 18427d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 18527d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 18627d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 18727d4218bSShri Abhyankar const PetscInt *ia, *ib; 188ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 18927d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 19027d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 19127d4218bSShri Abhyankar 19227d4218bSShri Abhyankar PetscFunctionBegin; 193f4259b30SLisandro Dalcin *keptrows = NULL; 194ce496241SStefano Zampini 19527d4218bSShri Abhyankar ia = a->i; 19627d4218bSShri Abhyankar ib = b->i; 1979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 1989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 19927d4218bSShri Abhyankar for (i = 0; i < m; i++) { 20027d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 20127d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 20227d4218bSShri Abhyankar if (!na && !nb) { 20327d4218bSShri Abhyankar cnt++; 20427d4218bSShri Abhyankar goto ok1; 20527d4218bSShri Abhyankar } 206ce496241SStefano Zampini aa = aav + ia[i]; 20727d4218bSShri Abhyankar for (j = 0; j < na; j++) { 20827d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 20927d4218bSShri Abhyankar } 2108e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 21127d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 21227d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 21327d4218bSShri Abhyankar } 21427d4218bSShri Abhyankar cnt++; 21527d4218bSShri Abhyankar ok1:; 21627d4218bSShri Abhyankar } 2171c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 218ce496241SStefano Zampini if (!n0rows) { 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 222ce496241SStefano Zampini } 2239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 22427d4218bSShri Abhyankar cnt = 0; 22527d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22627d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22727d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22827d4218bSShri Abhyankar if (!na && !nb) continue; 229ce496241SStefano Zampini aa = aav + ia[i]; 23027d4218bSShri Abhyankar for (j = 0; j < na; j++) { 23127d4218bSShri Abhyankar if (aa[j] != 0.0) { 23227d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23327d4218bSShri Abhyankar goto ok2; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar } 2368e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23727d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23827d4218bSShri Abhyankar if (bb[j] != 0.0) { 23927d4218bSShri Abhyankar rows[cnt++] = rstart + i; 24027d4218bSShri Abhyankar goto ok2; 24127d4218bSShri Abhyankar } 24227d4218bSShri Abhyankar } 24327d4218bSShri Abhyankar ok2:; 24427d4218bSShri Abhyankar } 2459566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24927d4218bSShri Abhyankar } 25027d4218bSShri Abhyankar 251ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 252d71ae5a4SJacob Faibussowitsch { 25399e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 25494342113SStefano Zampini PetscBool cong; 25599e65526SBarry Smith 25699e65526SBarry Smith PetscFunctionBegin; 2579566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 25894342113SStefano Zampini if (Y->assembled && cong) { 2599566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 26099e65526SBarry Smith } else { 2619566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 26299e65526SBarry Smith } 2633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26499e65526SBarry Smith } 26599e65526SBarry Smith 266ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 267d71ae5a4SJacob Faibussowitsch { 268f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 269f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 270f1f41ecbSJed Brown 271f1f41ecbSJed Brown PetscFunctionBegin; 2720298fd71SBarry Smith *zrows = NULL; 2739566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2749566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 275f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2769566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278f1f41ecbSJed Brown } 279f1f41ecbSJed Brown 280ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 281d71ae5a4SJacob Faibussowitsch { 2820716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 283a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 2840716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 2850716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 2860716a85fSBarry Smith PetscReal *work; 287ce496241SStefano Zampini const PetscScalar *dummy; 2880716a85fSBarry Smith 2890716a85fSBarry Smith PetscFunctionBegin; 2909566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 2919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 2929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 2939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 2949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 2959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 296857cbf51SRichard Tran Mills if (type == NORM_2) { 297ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 298ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 299857cbf51SRichard Tran Mills } else if (type == NORM_1) { 300ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 301ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 302857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 303ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 304ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 305857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 306ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 307ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 308857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 309ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 310ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 311857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 312857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 3131c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3140716a85fSBarry Smith } else { 3151c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3160716a85fSBarry Smith } 3179566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 318857cbf51SRichard Tran Mills if (type == NORM_2) { 319a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 320857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 321a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3220716a85fSBarry Smith } 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3240716a85fSBarry Smith } 3250716a85fSBarry Smith 326ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 327d71ae5a4SJacob Faibussowitsch { 328e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 329e52d2c62SBarry Smith IS sis, gis; 330e52d2c62SBarry Smith const PetscInt *isis, *igis; 331e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 332e52d2c62SBarry Smith 333e52d2c62SBarry Smith PetscFunctionBegin; 3349566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3359566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3369566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3379566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 340e52d2c62SBarry Smith 3419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3429566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3439566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 344e52d2c62SBarry Smith n = ngis + nsis; 3459566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3469566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 347e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3489566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 349e52d2c62SBarry Smith 3509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 355e52d2c62SBarry Smith } 356e52d2c62SBarry Smith 357dd6ea824SBarry Smith /* 3580f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3599e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3600f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3610f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 36272fa4726SStefano Zampini has an order N integer array but is fast to access. 3639e25ed09SBarry Smith */ 364d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 365d71ae5a4SJacob Faibussowitsch { 36644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 367d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 368dbb450caSBarry Smith 3693a40ed3dSBarry Smith PetscFunctionBegin; 37008401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 371aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 372eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 373c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 374b1fc9764SSatish Balay #else 3759566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 376905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 377b1fc9764SSatish Balay #endif 3783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3799e25ed09SBarry Smith } 3809e25ed09SBarry Smith 381d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 382a8f51744SPierre Jolivet do { \ 383db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 384db4deed7SKarl Rupp else high1 = nrow1; \ 385fd3458f5SBarry Smith lastcol1 = col; \ 386fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 387fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 388fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 389fd3458f5SBarry Smith else low1 = t; \ 390ba4e3ef2SSatish Balay } \ 391fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 392fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 393fd3458f5SBarry Smith if (rp1[_i] == col) { \ 3940c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 3950c0d7e18SFande Kong ap1[_i] += value; \ 3960c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 3970c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 3989371c9d4SSatish Balay } else ap1[_i] = value; \ 39930770e4dSSatish Balay goto a_noinsert; \ 4000520107fSSatish Balay } \ 4010520107fSSatish Balay } \ 4029371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4039371c9d4SSatish Balay low1 = 0; \ 4049371c9d4SSatish Balay high1 = nrow1; \ 4059371c9d4SSatish Balay goto a_noinsert; \ 4069371c9d4SSatish Balay } \ 4079371c9d4SSatish Balay if (nonew == 1) { \ 4089371c9d4SSatish Balay low1 = 0; \ 4099371c9d4SSatish Balay high1 = nrow1; \ 4109371c9d4SSatish Balay goto a_noinsert; \ 4119371c9d4SSatish Balay } \ 41208401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 413fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4149371c9d4SSatish Balay N = nrow1++ - 1; \ 4159371c9d4SSatish Balay a->nz++; \ 4169371c9d4SSatish Balay high1++; \ 4170520107fSSatish Balay /* shift up all the later entries in this row */ \ 4189566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4199566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 420fd3458f5SBarry Smith rp1[_i] = col; \ 421fd3458f5SBarry Smith ap1[_i] = value; \ 422e56f5c9eSBarry Smith A->nonzerostate++; \ 42330770e4dSSatish Balay a_noinsert:; \ 424fd3458f5SBarry Smith ailen[row] = nrow1; \ 425a8f51744SPierre Jolivet } while (0) 4260a198c4cSBarry Smith 427d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 428a8f51744SPierre Jolivet do { \ 429db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 430db4deed7SKarl Rupp else high2 = nrow2; \ 431fd3458f5SBarry Smith lastcol2 = col; \ 432fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 433fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 434fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 435fd3458f5SBarry Smith else low2 = t; \ 436ba4e3ef2SSatish Balay } \ 437fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 438fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 439fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4400c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4410c0d7e18SFande Kong ap2[_i] += value; \ 4420c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4439371c9d4SSatish Balay } else ap2[_i] = value; \ 44430770e4dSSatish Balay goto b_noinsert; \ 44530770e4dSSatish Balay } \ 44630770e4dSSatish Balay } \ 4479371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4489371c9d4SSatish Balay low2 = 0; \ 4499371c9d4SSatish Balay high2 = nrow2; \ 4509371c9d4SSatish Balay goto b_noinsert; \ 4519371c9d4SSatish Balay } \ 4529371c9d4SSatish Balay if (nonew == 1) { \ 4539371c9d4SSatish Balay low2 = 0; \ 4549371c9d4SSatish Balay high2 = nrow2; \ 4559371c9d4SSatish Balay goto b_noinsert; \ 4569371c9d4SSatish Balay } \ 45708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 458fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4599371c9d4SSatish Balay N = nrow2++ - 1; \ 4609371c9d4SSatish Balay b->nz++; \ 4619371c9d4SSatish Balay high2++; \ 46230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4649566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 465fd3458f5SBarry Smith rp2[_i] = col; \ 466fd3458f5SBarry Smith ap2[_i] = value; \ 467e56f5c9eSBarry Smith B->nonzerostate++; \ 46830770e4dSSatish Balay b_noinsert:; \ 469fd3458f5SBarry Smith bilen[row] = nrow2; \ 470a8f51744SPierre Jolivet } while (0) 47130770e4dSSatish Balay 472ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 473d71ae5a4SJacob Faibussowitsch { 4742fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4752fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4762fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 477fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4782fd7e33dSBarry Smith 4792fd7e33dSBarry Smith PetscFunctionBegin; 4802fd7e33dSBarry Smith /* code only works for square matrices A */ 4812fd7e33dSBarry Smith 4822fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 4839566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 4842fd7e33dSBarry Smith row = row - diag; 4852fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 4862fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 4872fd7e33dSBarry Smith } 488fff043a9SJunchao Zhang if (l) { 4899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 4909566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 4919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 492fff043a9SJunchao Zhang } 4932fd7e33dSBarry Smith 4942fd7e33dSBarry Smith /* diagonal part */ 495fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 4969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 4979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row]))); 4989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 499fff043a9SJunchao Zhang } 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* right of diagonal part */ 502fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5049566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 506fff043a9SJunchao Zhang } 5073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5082fd7e33dSBarry Smith } 5092fd7e33dSBarry Smith 510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 511d71ae5a4SJacob Faibussowitsch { 51244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 513071fcb05SBarry Smith PetscScalar value = 0.0; 514d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 515d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 516ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5178a729477SBarry Smith 5180520107fSSatish Balay /* Some Variables required in the macro */ 5194ee7247eSSatish Balay Mat A = aij->A; 5204ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 52157809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 522ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 52330770e4dSSatish Balay Mat B = aij->B; 52430770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 525d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 526ce496241SStefano Zampini MatScalar *aa, *ba; 527fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5288d76821aSHong Zhang PetscInt nonew; 529a77337e4SBarry Smith MatScalar *ap1, *ap2; 5304ee7247eSSatish Balay 5313a40ed3dSBarry Smith PetscFunctionBegin; 5329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5348a729477SBarry Smith for (i = 0; i < m; i++) { 5355ef9f2a5SBarry Smith if (im[i] < 0) continue; 53608401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5374b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5384b0e389bSBarry Smith row = im[i] - rstart; 539fd3458f5SBarry Smith lastcol1 = -1; 5408e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5418e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 542fd3458f5SBarry Smith rmax1 = aimax[row]; 543fd3458f5SBarry Smith nrow1 = ailen[row]; 544fd3458f5SBarry Smith low1 = 0; 545fd3458f5SBarry Smith high1 = nrow1; 546fd3458f5SBarry Smith lastcol2 = -1; 5478e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5488e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 549fd3458f5SBarry Smith rmax2 = bimax[row]; 550d498b1e9SBarry Smith nrow2 = bilen[row]; 551fd3458f5SBarry Smith low2 = 0; 552fd3458f5SBarry Smith high2 = nrow2; 553fd3458f5SBarry Smith 5541eb62cbbSBarry Smith for (j = 0; j < n; j++) { 555071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 556c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 557fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 558fd3458f5SBarry Smith col = in[j] - cstart; 5598d76821aSHong Zhang nonew = a->nonew; 560d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 561f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 562f7d195e4SLawrence Mitchell continue; 563f7d195e4SLawrence Mitchell } else { 564f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 565227d817aSBarry Smith if (mat->was_assembled) { 56648a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 567aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 568eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 569fa46199cSSatish Balay col--; 570b1fc9764SSatish Balay #else 571905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 572b1fc9764SSatish Balay #endif 573fff043a9SJunchao Zhang if (col < 0 && !((Mat_SeqAIJ *)(aij->B->data))->nonew) { /* col < 0 means in[j] is a new col for B */ 5749566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); /* Change aij->B from reduced/local format to expanded/global format */ 5754b0e389bSBarry Smith col = in[j]; 5769bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 577f9508a3cSSatish Balay B = aij->B; 578f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5799371c9d4SSatish Balay bimax = b->imax; 5809371c9d4SSatish Balay bi = b->i; 5819371c9d4SSatish Balay bilen = b->ilen; 5829371c9d4SSatish Balay bj = b->j; 5839371c9d4SSatish Balay ba = b->a; 584d498b1e9SBarry Smith rp2 = bj + bi[row]; 585d498b1e9SBarry Smith ap2 = ba + bi[row]; 586d498b1e9SBarry Smith rmax2 = bimax[row]; 587d498b1e9SBarry Smith nrow2 = bilen[row]; 588d498b1e9SBarry Smith low2 = 0; 589d498b1e9SBarry Smith high2 = nrow2; 590d0f46423SBarry Smith bm = aij->B->rmap->n; 591f9508a3cSSatish Balay ba = b->a; 592d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 5930587a0fcSBarry Smith if (1 == ((Mat_SeqAIJ *)(aij->B->data))->nonew) { 5949566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 59598921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 5960587a0fcSBarry Smith } 597c48de900SBarry Smith } else col = in[j]; 5988d76821aSHong Zhang nonew = b->nonew; 599d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6001eb62cbbSBarry Smith } 6011eb62cbbSBarry Smith } 6025ef9f2a5SBarry Smith } else { 60328b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 60490f02eecSBarry Smith if (!aij->donotstash) { 6055080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 606d36fbae8SSatish Balay if (roworiented) { 6078e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 608d36fbae8SSatish Balay } else { 6098e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6104b0e389bSBarry Smith } 6111eb62cbbSBarry Smith } 6128a729477SBarry Smith } 61390f02eecSBarry Smith } 6145519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6178a729477SBarry Smith } 6188a729477SBarry Smith 6192b08fdbeSandi selinger /* 620904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6212b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 622904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6232b08fdbeSandi selinger */ 624d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 625d71ae5a4SJacob Faibussowitsch { 626904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 627904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6284cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 629904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 630904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 631904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 632904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 633904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6346dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 635904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 636904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 637904d1e70Sandi selinger 638904d1e70Sandi selinger PetscFunctionBegin; 639904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 640904d1e70Sandi selinger for (j = 0; j < am; j++) { 641904d1e70Sandi selinger dnz = onz = 0; 642904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6436dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 644904d1e70Sandi selinger /* If column is in the diagonal */ 645904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 646904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 647904d1e70Sandi selinger dnz++; 648904d1e70Sandi selinger } else { /* off-diagonal entries */ 649904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 650904d1e70Sandi selinger onz++; 651904d1e70Sandi selinger } 652904d1e70Sandi selinger } 653904d1e70Sandi selinger ailen[j] = dnz; 654904d1e70Sandi selinger bilen[j] = onz; 655904d1e70Sandi selinger } 6563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 657904d1e70Sandi selinger } 658904d1e70Sandi selinger 659904d1e70Sandi selinger /* 660904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 661904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6621de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6631de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6641de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 665904d1e70Sandi selinger */ 666d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 667d71ae5a4SJacob Faibussowitsch { 6683a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6693a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6704cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 671e9ede7d0Sandi selinger Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)(aij->A)->data, *aijo = (Mat_SeqAIJ *)(aij->B)->data; 6723a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6733a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6743a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6753a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6763a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6776dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6781de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 679904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 680904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 6813a063d27Sandi selinger 6823a063d27Sandi selinger PetscFunctionBegin; 6833a063d27Sandi selinger /* Iterate over all rows of the matrix */ 6843a063d27Sandi selinger for (j = 0; j < am; j++) { 685904d1e70Sandi selinger dnz_row = onz_row = 0; 686904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 687904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 688e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 689e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 690ae8e66a0Sandi selinger /* If column is in the diagonal */ 6913a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 692904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 693904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 694904d1e70Sandi selinger dnz_row++; 695ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 696904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 697904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 698904d1e70Sandi selinger onz_row++; 6993a063d27Sandi selinger } 7003a063d27Sandi selinger } 701904d1e70Sandi selinger ailen[j] = dnz_row; 702904d1e70Sandi selinger bilen[j] = onz_row; 7033a063d27Sandi selinger } 7043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7053a063d27Sandi selinger } 7063a063d27Sandi selinger 707ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 708d71ae5a4SJacob Faibussowitsch { 709b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 710d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 711d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 712b49de8d1SLois Curfman McInnes 7133a40ed3dSBarry Smith PetscFunctionBegin; 714b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 71554c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 71654c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 71785835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 718b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 719b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 72054c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 72154c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 722b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 723b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7249566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 725fa852ad4SSatish Balay } else { 72648a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 727aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 728eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 729fa46199cSSatish Balay col--; 730b1fc9764SSatish Balay #else 731905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 732b1fc9764SSatish Balay #endif 733e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 73448a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 735b49de8d1SLois Curfman McInnes } 736b49de8d1SLois Curfman McInnes } 737b49de8d1SLois Curfman McInnes } 7383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 739b49de8d1SLois Curfman McInnes } 740bc5ccf88SSatish Balay 741ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 742d71ae5a4SJacob Faibussowitsch { 743bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 744b1d57f15SBarry Smith PetscInt nstash, reallocs; 745bc5ccf88SSatish Balay 746bc5ccf88SSatish Balay PetscFunctionBegin; 7473ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 748bc5ccf88SSatish Balay 7499566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7509566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7519566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 753bc5ccf88SSatish Balay } 754bc5ccf88SSatish Balay 755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 756d71ae5a4SJacob Faibussowitsch { 757bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 758b1d57f15SBarry Smith PetscMPIInt n; 759b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 760e44c0bd4SBarry Smith PetscInt *row, *col; 761ace3abfcSBarry Smith PetscBool other_disassembled; 76287828ca2SBarry Smith PetscScalar *val; 763bc5ccf88SSatish Balay 76491c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7656e111a19SKarl Rupp 766bc5ccf88SSatish Balay PetscFunctionBegin; 7674cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 768a2d1c673SSatish Balay while (1) { 7699566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 770a2d1c673SSatish Balay if (!flg) break; 771a2d1c673SSatish Balay 772bc5ccf88SSatish Balay for (i = 0; i < n;) { 773bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7742205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7752205254eSKarl Rupp if (row[j] != rstart) break; 7762205254eSKarl Rupp } 777bc5ccf88SSatish Balay if (j < n) ncols = j - i; 778bc5ccf88SSatish Balay else ncols = n - i; 779bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7809566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 781bc5ccf88SSatish Balay i = j; 782bc5ccf88SSatish Balay } 783bc5ccf88SSatish Balay } 7849566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 785bc5ccf88SSatish Balay } 7868c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 787c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 7889ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 7899ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 7909566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 7919566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 7929ecce9b1SRichard Tran Mills } 793e2cf4d64SStefano Zampini #endif 7949566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 7959566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 796bc5ccf88SSatish Balay 797bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 798071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 799bc5ccf88SSatish Balay /* 800bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 801bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 802bc5ccf88SSatish Balay */ 803bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 8045f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 80535cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 8069566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 807ad59fb31SSatish Balay } 808ad59fb31SSatish Balay } 80948a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8109566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8118c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 812c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 813e2cf4d64SStefano Zampini #endif 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 816bc5ccf88SSatish Balay 8179566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8182205254eSKarl Rupp 819f4259b30SLisandro Dalcin aij->rowvalues = NULL; 820a30b2313SHong Zhang 8219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 822e56f5c9eSBarry Smith 8234f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8244f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)(aij->A->data))->nonew) { 825e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 8261c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 827e56f5c9eSBarry Smith } 8288c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 829c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 830e2cf4d64SStefano Zampini #endif 8313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 832bc5ccf88SSatish Balay } 833bc5ccf88SSatish Balay 834ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 835d71ae5a4SJacob Faibussowitsch { 83644a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8373a40ed3dSBarry Smith 8383a40ed3dSBarry Smith PetscFunctionBegin; 8399566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8409566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8421eb62cbbSBarry Smith } 8431eb62cbbSBarry Smith 844ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 845d71ae5a4SJacob Faibussowitsch { 8461b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8471b1dd7adSMatthew G. Knepley PetscInt *lrows; 8486e520ac8SStefano Zampini PetscInt r, len; 8499939a2d1SBarry Smith PetscBool cong; 8501eb62cbbSBarry Smith 8513a40ed3dSBarry Smith PetscFunctionBegin; 8526e520ac8SStefano Zampini /* get locally owned rows */ 8539566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8549566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 85597b48c8fSBarry Smith /* fix right hand side if needed */ 85697b48c8fSBarry Smith if (x && b) { 8571b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8581b1dd7adSMatthew G. Knepley PetscScalar *bb; 8591b1dd7adSMatthew G. Knepley 86028b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8619566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8629566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8631b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 86697b48c8fSBarry Smith } 867a92ad425SStefano Zampini 868a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8699566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8709566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 871a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 872a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 873a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 874a92ad425SStefano Zampini PetscInt nnwA, nnwB; 875a92ad425SStefano Zampini PetscBool nnzA, nnzB; 876a92ad425SStefano Zampini 877a92ad425SStefano Zampini nnwA = aijA->nonew; 878a92ad425SStefano Zampini nnwB = aijB->nonew; 879a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 880a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 881a92ad425SStefano Zampini if (!nnzA) { 8829566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 883a92ad425SStefano Zampini aijA->nonew = 0; 884a92ad425SStefano Zampini } 885a92ad425SStefano Zampini if (!nnzB) { 8869566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 887a92ad425SStefano Zampini aijB->nonew = 0; 888a92ad425SStefano Zampini } 889a92ad425SStefano Zampini /* Must zero here before the next loop */ 8909566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 8919566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 8921b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 8931b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 894a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 8959566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 896e2d53e46SBarry Smith } 897a92ad425SStefano Zampini aijA->nonew = nnwA; 898a92ad425SStefano Zampini aijB->nonew = nnwB; 8996eb55b6aSBarry Smith } else { 9009566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9019566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9026eb55b6aSBarry Smith } 9039566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9049566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9059566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9064f9cfa9eSBarry Smith 9079939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 9089939a2d1SBarry Smith if (!((Mat_SeqAIJ *)(mat->A->data))->keepnonzeropattern || !((Mat_SeqAIJ *)(mat->A->data))->nonew) { 9099939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 9109939a2d1SBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9119939a2d1SBarry Smith } 9123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9131eb62cbbSBarry Smith } 9141eb62cbbSBarry Smith 915ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 916d71ae5a4SJacob Faibussowitsch { 9179c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9185ba17502SJed Brown PetscMPIInt n = A->rmap->n; 919131c27b5Sprj- PetscInt i, j, r, m, len = 0; 92054bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 921131c27b5Sprj- PetscMPIInt p = 0; 92254bd4135SMatthew G. Knepley PetscSFNode *rrows; 92354bd4135SMatthew G. Knepley PetscSF sf; 9249c7c4993SBarry Smith const PetscScalar *xx; 925fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 926564f14d6SBarry Smith Vec xmask, lmask; 927564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 928564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 929564f14d6SBarry Smith PetscScalar *aa; 9309c7c4993SBarry Smith 9319c7c4993SBarry Smith PetscFunctionBegin; 93254bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 93454bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 93654bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 93754bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 938aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9395ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9409566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9415ba17502SJed Brown } 94254bd4135SMatthew G. Knepley rrows[r].rank = p; 94354bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9449c7c4993SBarry Smith } 9459566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9469566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 94754bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9489566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9499566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9509566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 95154bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9529371c9d4SSatish Balay for (r = 0; r < n; ++r) 9539371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 954564f14d6SBarry Smith /* zero diagonal part of matrix */ 9559566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9564cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9579566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9589566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9599566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 96054bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9629566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 965a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 966a92ad425SStefano Zampini PetscBool cong; 967a92ad425SStefano Zampini 9689566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 96928b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9709566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9719566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9729566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9739566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 974377aa5a1SBarry Smith } 9759566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9764cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 978564f14d6SBarry Smith ii = aij->i; 9798e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 980564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 981564f14d6SBarry Smith if (aij->compressedrow.use) { 982564f14d6SBarry Smith m = aij->compressedrow.nrows; 983564f14d6SBarry Smith ii = aij->compressedrow.i; 984564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 985564f14d6SBarry Smith for (i = 0; i < m; i++) { 986564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 987564f14d6SBarry Smith aj = aij->j + ii[i]; 988fff043a9SJunchao Zhang aa = aij_a + ii[i]; 989564f14d6SBarry Smith 990564f14d6SBarry Smith for (j = 0; j < n; j++) { 99125266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 992377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 993564f14d6SBarry Smith *aa = 0.0; 994564f14d6SBarry Smith } 995564f14d6SBarry Smith aa++; 996564f14d6SBarry Smith aj++; 997564f14d6SBarry Smith } 998564f14d6SBarry Smith ridx++; 999564f14d6SBarry Smith } 1000564f14d6SBarry Smith } else { /* do not use compressed row format */ 1001564f14d6SBarry Smith m = l->B->rmap->n; 1002564f14d6SBarry Smith for (i = 0; i < m; i++) { 1003564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1004564f14d6SBarry Smith aj = aij->j + ii[i]; 1005fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1006564f14d6SBarry Smith for (j = 0; j < n; j++) { 100725266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1008377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1009564f14d6SBarry Smith *aa = 0.0; 1010564f14d6SBarry Smith } 1011564f14d6SBarry Smith aa++; 1012564f14d6SBarry Smith aj++; 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith } 1015564f14d6SBarry Smith } 1016a92ad425SStefano Zampini if (x && b) { 10179566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10189566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1019377aa5a1SBarry Smith } 10209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10219566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10229566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10239566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10244f9cfa9eSBarry Smith 10254f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 10269939a2d1SBarry Smith if (!((Mat_SeqAIJ *)(l->A->data))->nonew) { 10274f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 10281c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10294f9cfa9eSBarry Smith } 10303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10319c7c4993SBarry Smith } 10329c7c4993SBarry Smith 1033ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1034d71ae5a4SJacob Faibussowitsch { 1035416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1036b1d57f15SBarry Smith PetscInt nt; 103719b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1038416022c9SBarry Smith 10393a40ed3dSBarry Smith PetscFunctionBegin; 10409566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 104108401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10429566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1043296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10449566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1045296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10471eb62cbbSBarry Smith } 10481eb62cbbSBarry Smith 1049ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1050d71ae5a4SJacob Faibussowitsch { 1051bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1052bd0c2dcbSBarry Smith 1053bd0c2dcbSBarry Smith PetscFunctionBegin; 10549566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1056bd0c2dcbSBarry Smith } 1057bd0c2dcbSBarry Smith 1058ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1059d71ae5a4SJacob Faibussowitsch { 1060416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 106101ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10623a40ed3dSBarry Smith 10633a40ed3dSBarry Smith PetscFunctionBegin; 10649566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10659566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10669566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10679566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1069da3a660dSBarry Smith } 1070da3a660dSBarry Smith 1071ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1072d71ae5a4SJacob Faibussowitsch { 1073416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1074da3a660dSBarry Smith 10753a40ed3dSBarry Smith PetscFunctionBegin; 1076da3a660dSBarry Smith /* do nondiagonal part */ 10779566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1078da3a660dSBarry Smith /* do local part */ 10799566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10809613dc34SJunchao Zhang /* add partial results together */ 10819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1084da3a660dSBarry Smith } 1085da3a660dSBarry Smith 1086ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1087d71ae5a4SJacob Faibussowitsch { 10884f423910Svictorle MPI_Comm comm; 1089ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1090ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1091cd0d46ebSvictorle IS Me, Notme; 1092b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 109354d735aeSStefano Zampini PetscBool lf; 1094b1d57f15SBarry Smith PetscMPIInt size; 1095cd0d46ebSvictorle 1096cd0d46ebSvictorle PetscFunctionBegin; 109742e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 10989566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 10991c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11003ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11019566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11033ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 110442e5f5b4Svictorle 11057dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11069566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11079566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1109cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1110cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11119566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11129566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11139566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 111466501d38Svictorle Aoff = Aoffs[0]; 11159566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 111666501d38Svictorle Boff = Boffs[0]; 11179566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11189566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11199566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11219566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11229566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1124cd0d46ebSvictorle } 1125cd0d46ebSvictorle 1126ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsSymmetric_MPIAIJ(Mat A, PetscReal tol, PetscBool *f) 1127d71ae5a4SJacob Faibussowitsch { 1128a3bbdb47SHong Zhang PetscFunctionBegin; 11299566063dSJacob Faibussowitsch PetscCall(MatIsTranspose_MPIAIJ(A, A, tol, f)); 11303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1131a3bbdb47SHong Zhang } 1132a3bbdb47SHong Zhang 1133ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1134d71ae5a4SJacob Faibussowitsch { 1135416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1136da3a660dSBarry Smith 11373a40ed3dSBarry Smith PetscFunctionBegin; 1138da3a660dSBarry Smith /* do nondiagonal part */ 11399566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1140da3a660dSBarry Smith /* do local part */ 11419566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11429613dc34SJunchao Zhang /* add partial results together */ 11439566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11449566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1146da3a660dSBarry Smith } 1147da3a660dSBarry Smith 11481eb62cbbSBarry Smith /* 11491eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11501eb62cbbSBarry Smith diagonal block 11511eb62cbbSBarry Smith */ 1152ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1153d71ae5a4SJacob Faibussowitsch { 1154416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11553a40ed3dSBarry Smith 11563a40ed3dSBarry Smith PetscFunctionBegin; 115708401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1158aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11599566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11611eb62cbbSBarry Smith } 11621eb62cbbSBarry Smith 1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1164d71ae5a4SJacob Faibussowitsch { 1165052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11663a40ed3dSBarry Smith 11673a40ed3dSBarry Smith PetscFunctionBegin; 11689566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11699566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1171052efed2SBarry Smith } 1172052efed2SBarry Smith 1173ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1174d71ae5a4SJacob Faibussowitsch { 11758e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11768e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11778e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11783ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11792e5835c6SStefano Zampini const PetscScalar *aa, *ba; 118017a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 118117a3732bSBarry Smith PetscInt64 nz, hnz; 11823ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11833ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11843ea6fe3dSLisandro Dalcin PetscScalar *matvals; 118517a3732bSBarry Smith PetscMPIInt rank; 11868e2fed03SBarry Smith 11878e2fed03SBarry Smith PetscFunctionBegin; 11889566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11893ea6fe3dSLisandro Dalcin 11903ea6fe3dSLisandro Dalcin M = mat->rmap->N; 11913ea6fe3dSLisandro Dalcin N = mat->cmap->N; 11923ea6fe3dSLisandro Dalcin m = mat->rmap->n; 11933ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 11943ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 11958e2fed03SBarry Smith nz = A->nz + B->nz; 11963ea6fe3dSLisandro Dalcin 11973ea6fe3dSLisandro Dalcin /* write matrix header */ 11980700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 11999371c9d4SSatish Balay header[1] = M; 12009371c9d4SSatish Balay header[2] = N; 120117a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 120217a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 120338b83642SBarry Smith if (rank == 0) { 120438b83642SBarry Smith if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT; 120538b83642SBarry Smith else header[3] = (PetscInt)hnz; 120638b83642SBarry Smith } 12079566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12088e2fed03SBarry Smith 12093ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12113ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12129566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12139566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12148e2fed03SBarry Smith 12153ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12173ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12183ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12193ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12203ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12218e2fed03SBarry Smith } 12229371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12239371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12248e2fed03SBarry Smith } 122517a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12269566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12279566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12288e2fed03SBarry Smith 12293ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12333ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12343ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12353ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12362e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12378e2fed03SBarry Smith } 12389371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12399371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12408e2fed03SBarry Smith } 12419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 124317a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12449566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12459566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12468e2fed03SBarry Smith 12473ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12489566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12508e2fed03SBarry Smith } 12518e2fed03SBarry Smith 12529804daf3SBarry Smith #include <petscdraw.h> 1253ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1254d71ae5a4SJacob Faibussowitsch { 125544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 125632dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1257ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1258b0a32e0cSBarry Smith PetscViewer sviewer; 1259f3ef73ceSBarry Smith PetscViewerFormat format; 1260416022c9SBarry Smith 12613a40ed3dSBarry Smith PetscFunctionBegin; 12629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12649566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 126532077d6dSBarry Smith if (iascii) { 12669566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1267ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 1268ef5fdb51SBarry Smith PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)(aij->A->data))->nz + ((Mat_SeqAIJ *)(aij->B->data))->nz; 12699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1271ef5fdb51SBarry Smith for (i = 0; i < (PetscInt)size; i++) { 1272ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1273ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1274ef5fdb51SBarry Smith navg += nz[i]; 1275ef5fdb51SBarry Smith } 12769566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1277ef5fdb51SBarry Smith navg = navg / size; 12789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1280ef5fdb51SBarry Smith } 12819566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1282456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12834e220ebcSLois Curfman McInnes MatInfo info; 12846335e310SSatish Balay PetscInt *inodes = NULL; 1285923f20ffSKris Buschelman 12869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12879566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12889566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12899566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1290923f20ffSKris Buschelman if (!inodes) { 12919371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12929371c9d4SSatish Balay (double)info.memory)); 12936831982aSBarry Smith } else { 12949371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12959371c9d4SSatish Balay (double)info.memory)); 12966831982aSBarry Smith } 12979566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 12989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12999566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13009566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13019566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13049566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1306fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1307923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13089566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1309923f20ffSKris Buschelman if (inodes) { 13109566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1311d38fa0fbSBarry Smith } else { 13129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1313d38fa0fbSBarry Smith } 13143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13154aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131708480c60SBarry Smith } 13188e2fed03SBarry Smith } else if (isbinary) { 13198e2fed03SBarry Smith if (size == 1) { 13209566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13219566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13228e2fed03SBarry Smith } else { 13239566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13248e2fed03SBarry Smith } 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132671e56450SStefano Zampini } else if (iascii && size == 1) { 13279566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13289566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13300f5bd95cSBarry Smith } else if (isdraw) { 1331b0a32e0cSBarry Smith PetscDraw draw; 1332ace3abfcSBarry Smith PetscBool isnull; 13339566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13349566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13353ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 133619bcc07fSBarry Smith } 133719bcc07fSBarry Smith 133871e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 133971e56450SStefano Zampini Mat A = NULL, Av; 134071e56450SStefano Zampini IS isrow, iscol; 13412ee70a88SLois Curfman McInnes 13429566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13439566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13449566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13459566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 134671e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 134771e56450SStefano Zampini /* 134871e56450SStefano Zampini Mat *AA, A = NULL, Av; 134971e56450SStefano Zampini IS isrow,iscol; 135071e56450SStefano Zampini 13519566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13529566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13539566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1354dd400576SPatrick Sanan if (rank == 0) { 13559566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 135671e56450SStefano Zampini A = AA[0]; 135771e56450SStefano Zampini Av = AA[0]; 135895373324SBarry Smith } 13599566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136071e56450SStefano Zampini */ 13619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13629566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 136355843e3eSBarry Smith /* 136455843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1365b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 136655843e3eSBarry Smith */ 13679566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1368dd400576SPatrick Sanan if (rank == 0) { 136948a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13709566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 137195373324SBarry Smith } 13729566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13739566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 137495373324SBarry Smith } 13753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13761eb62cbbSBarry Smith } 13771eb62cbbSBarry Smith 1378d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1379d71ae5a4SJacob Faibussowitsch { 1380ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1381416022c9SBarry Smith 13823a40ed3dSBarry Smith PetscFunctionBegin; 13839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13849566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13859566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13869566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 138748a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1389416022c9SBarry Smith } 1390416022c9SBarry Smith 1391ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1392d71ae5a4SJacob Faibussowitsch { 139344a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1394f4259b30SLisandro Dalcin Vec bb1 = NULL; 1395ace3abfcSBarry Smith PetscBool hasop; 13968a729477SBarry Smith 13973a40ed3dSBarry Smith PetscFunctionBegin; 1398a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 13999566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1401a2b30743SBarry Smith } 1402a2b30743SBarry Smith 140348a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14044e980039SJed Brown 1405c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1406da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14079566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14082798e883SHong Zhang its--; 1409da3a660dSBarry Smith } 14102798e883SHong Zhang 14112798e883SHong Zhang while (its--) { 14129566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14139566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14142798e883SHong Zhang 1415c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14169566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14179566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14182798e883SHong Zhang 1419c14dc6b6SHong Zhang /* local sweep */ 14209566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14212798e883SHong Zhang } 14223a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1423da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14249566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14252798e883SHong Zhang its--; 1426da3a660dSBarry Smith } 14272798e883SHong Zhang while (its--) { 14289566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14299566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14302798e883SHong Zhang 1431c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14329566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14339566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1434c14dc6b6SHong Zhang 1435c14dc6b6SHong Zhang /* local sweep */ 14369566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14372798e883SHong Zhang } 14383a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1439da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14409566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14412798e883SHong Zhang its--; 1442da3a660dSBarry Smith } 14432798e883SHong Zhang while (its--) { 14449566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14459566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14462798e883SHong Zhang 1447c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14489566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14499566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14502798e883SHong Zhang 1451c14dc6b6SHong Zhang /* local sweep */ 14529566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14532798e883SHong Zhang } 1454a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1455a7420bb7SBarry Smith Vec xx1; 1456a7420bb7SBarry Smith 14579566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14589566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1459a7420bb7SBarry Smith 14609566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14619566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1462a7420bb7SBarry Smith if (!mat->diag) { 14639566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14649566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1465a7420bb7SBarry Smith } 14669566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1467bd0c2dcbSBarry Smith if (hasop) { 14689566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1469bd0c2dcbSBarry Smith } else { 14709566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1471bd0c2dcbSBarry Smith } 14729566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1473887ee2caSBarry Smith 14749566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1475a7420bb7SBarry Smith 1476a7420bb7SBarry Smith /* local sweep */ 14779566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14789566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14799566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1480ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1481c14dc6b6SHong Zhang 14829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1483a0808db4SHong Zhang 14847b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14868a729477SBarry Smith } 1487a66be287SLois Curfman McInnes 1488ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1489d71ae5a4SJacob Faibussowitsch { 149072e6a0cfSJed Brown Mat aA, aB, Aperm; 149172e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 149272e6a0cfSJed Brown PetscScalar *aa, *ba; 149372e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 149472e6a0cfSJed Brown PetscSF rowsf, sf; 14950298fd71SBarry Smith IS parcolp = NULL; 149672e6a0cfSJed Brown PetscBool done; 149742e855d1Svictor 149842e855d1Svictor PetscFunctionBegin; 14999566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15009566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15029566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 150372e6a0cfSJed Brown 150472e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15059566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15069566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15079566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 150872e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15099566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15109566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 151172e6a0cfSJed Brown 151272e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15139566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15149566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15159566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 151672e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15179566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15199566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152072e6a0cfSJed Brown 15219566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15229566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15239566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 152472e6a0cfSJed Brown 152572e6a0cfSJed Brown /* Find out where my gcols should go */ 15269566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15289566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15299566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15309566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15319566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15329566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15339566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 153472e6a0cfSJed Brown 15359566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15369566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15379566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 153872e6a0cfSJed Brown for (i = 0; i < m; i++) { 1539131c27b5Sprj- PetscInt row = rdest[i]; 1540131c27b5Sprj- PetscMPIInt rowner; 15419566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 154272e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1543131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1544131c27b5Sprj- PetscMPIInt cowner; 15459566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 154672e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 154772e6a0cfSJed Brown else onnz[i]++; 154872e6a0cfSJed Brown } 154972e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1550131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1551131c27b5Sprj- PetscMPIInt cowner; 15529566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 155372e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155472e6a0cfSJed Brown else onnz[i]++; 155572e6a0cfSJed Brown } 155672e6a0cfSJed Brown } 15579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15589566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15599566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15609566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15619566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 156272e6a0cfSJed Brown 15639566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 156672e6a0cfSJed Brown for (i = 0; i < m; i++) { 156772e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1568970468b0SJed Brown PetscInt j0, rowlen; 156972e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1570970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1571970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15729566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1573970468b0SJed Brown } 157472e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1575970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1576970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15779566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1578970468b0SJed Brown } 157972e6a0cfSJed Brown } 15809566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15819566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15829566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15839566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15869566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15879566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15889566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15899566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159072e6a0cfSJed Brown *B = Aperm; 15913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 159242e855d1Svictor } 159342e855d1Svictor 1594ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1595d71ae5a4SJacob Faibussowitsch { 1596c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1597c5e4d11fSDmitry Karpeev 1598c5e4d11fSDmitry Karpeev PetscFunctionBegin; 15999566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1600c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1602c5e4d11fSDmitry Karpeev } 1603c5e4d11fSDmitry Karpeev 1604ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1605d71ae5a4SJacob Faibussowitsch { 1606a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1607a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16083966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1609a66be287SLois Curfman McInnes 16103a40ed3dSBarry Smith PetscFunctionBegin; 16114e220ebcSLois Curfman McInnes info->block_size = 1.0; 16129566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16132205254eSKarl Rupp 16149371c9d4SSatish Balay isend[0] = info->nz_used; 16159371c9d4SSatish Balay isend[1] = info->nz_allocated; 16169371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16179371c9d4SSatish Balay isend[3] = info->memory; 16189371c9d4SSatish Balay isend[4] = info->mallocs; 16192205254eSKarl Rupp 16209566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16212205254eSKarl Rupp 16229371c9d4SSatish Balay isend[0] += info->nz_used; 16239371c9d4SSatish Balay isend[1] += info->nz_allocated; 16249371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16259371c9d4SSatish Balay isend[3] += info->memory; 16269371c9d4SSatish Balay isend[4] += info->mallocs; 1627a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16284e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16294e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16304e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16314e220ebcSLois Curfman McInnes info->memory = isend[3]; 16324e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1633a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 16341c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16352205254eSKarl Rupp 16364e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16374e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16384e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16394e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16404e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1641a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 16421c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16432205254eSKarl Rupp 16444e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16454e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16464e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16474e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16484e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1649a66be287SLois Curfman McInnes } 16504e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16514e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16524e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1654a66be287SLois Curfman McInnes } 1655a66be287SLois Curfman McInnes 1656d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1657d71ae5a4SJacob Faibussowitsch { 1658c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1659c74985f6SBarry Smith 16603a40ed3dSBarry Smith PetscFunctionBegin; 166112c028f9SKris Buschelman switch (op) { 1662512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 166312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 166428b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1665a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 166612c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16670ad02fcaSStefano Zampini case MAT_USE_INODES: 166812c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16691a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1670fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16719566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16729566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 167312c028f9SKris Buschelman break; 167412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 167543674050SBarry Smith MatCheckPreallocated(A, 1); 16764e0d8c25SBarry Smith a->roworiented = flg; 16772205254eSKarl Rupp 16789566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16799566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168012c028f9SKris Buschelman break; 16818c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1682d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1683d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1684d71ae5a4SJacob Faibussowitsch break; 1685d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1686d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1687d71ae5a4SJacob Faibussowitsch break; 1688c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1689ffa07934SHong Zhang case MAT_SPD: 169077e54ba9SKris Buschelman case MAT_SYMMETRIC: 169177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1692bf108f30SBarry Smith case MAT_HERMITIAN: 1693bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1694b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1695b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1696b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 169777e54ba9SKris Buschelman break; 1698d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1699d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1700d71ae5a4SJacob Faibussowitsch break; 1701957cac9fSHong Zhang case MAT_STRUCTURE_ONLY: 1702957cac9fSHong Zhang /* The option is handled directly by MatSetOption() */ 1703957cac9fSHong Zhang break; 1704d71ae5a4SJacob Faibussowitsch default: 1705d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 17063a40ed3dSBarry Smith } 17073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1708c74985f6SBarry Smith } 1709c74985f6SBarry Smith 1710d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1711d71ae5a4SJacob Faibussowitsch { 1712154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 171387828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1714d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1715d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1716b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 171739e00950SLois Curfman McInnes 17183a40ed3dSBarry Smith PetscFunctionBegin; 171928b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17207a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17217a0afa10SBarry Smith 172270f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17237a0afa10SBarry Smith /* 17247a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17257a0afa10SBarry Smith */ 17267a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1727b1d57f15SBarry Smith PetscInt max = 1, tmp; 1728d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17297a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17302205254eSKarl Rupp if (max < tmp) max = tmp; 17317a0afa10SBarry Smith } 17329566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17337a0afa10SBarry Smith } 17347a0afa10SBarry Smith 1735aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1736abc0e9e4SLois Curfman McInnes lrow = row - rstart; 173739e00950SLois Curfman McInnes 17389371c9d4SSatish Balay pvA = &vworkA; 17399371c9d4SSatish Balay pcA = &cworkA; 17409371c9d4SSatish Balay pvB = &vworkB; 17419371c9d4SSatish Balay pcB = &cworkB; 17429371c9d4SSatish Balay if (!v) { 17439371c9d4SSatish Balay pvA = NULL; 17449371c9d4SSatish Balay pvB = NULL; 17459371c9d4SSatish Balay } 17469371c9d4SSatish Balay if (!idx) { 17479371c9d4SSatish Balay pcA = NULL; 17489371c9d4SSatish Balay if (!v) pcB = NULL; 17499371c9d4SSatish Balay } 17509566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17519566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1752154123eaSLois Curfman McInnes nztot = nzA + nzB; 1753154123eaSLois Curfman McInnes 175470f0671dSBarry Smith cmap = mat->garray; 1755154123eaSLois Curfman McInnes if (v || idx) { 1756154123eaSLois Curfman McInnes if (nztot) { 1757154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1758b1d57f15SBarry Smith PetscInt imark = -1; 1759154123eaSLois Curfman McInnes if (v) { 176070f0671dSBarry Smith *v = v_p = mat->rowvalues; 176139e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 176270f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1763154123eaSLois Curfman McInnes else break; 1764154123eaSLois Curfman McInnes } 1765154123eaSLois Curfman McInnes imark = i; 176670f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 176770f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1768154123eaSLois Curfman McInnes } 1769154123eaSLois Curfman McInnes if (idx) { 177070f0671dSBarry Smith *idx = idx_p = mat->rowindices; 177170f0671dSBarry Smith if (imark > -1) { 1772ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 177370f0671dSBarry Smith } else { 1774154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 177570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1776154123eaSLois Curfman McInnes else break; 1777154123eaSLois Curfman McInnes } 1778154123eaSLois Curfman McInnes imark = i; 177970f0671dSBarry Smith } 178070f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 178170f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 178239e00950SLois Curfman McInnes } 17833f97c4b0SBarry Smith } else { 1784f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1785f4259b30SLisandro Dalcin if (v) *v = NULL; 17861ca473b0SSatish Balay } 1787154123eaSLois Curfman McInnes } 178839e00950SLois Curfman McInnes *nz = nztot; 17899566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17909566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179239e00950SLois Curfman McInnes } 179339e00950SLois Curfman McInnes 1794d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1795d71ae5a4SJacob Faibussowitsch { 17967a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 17973a40ed3dSBarry Smith 17983a40ed3dSBarry Smith PetscFunctionBegin; 179928b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18007a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180239e00950SLois Curfman McInnes } 180339e00950SLois Curfman McInnes 1804ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1805d71ae5a4SJacob Faibussowitsch { 1806855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1807ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1808d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1809329f5518SBarry Smith PetscReal sum = 0.0; 1810fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 181104ca555eSLois Curfman McInnes 18123a40ed3dSBarry Smith PetscFunctionBegin; 181317699dbbSLois Curfman McInnes if (aij->size == 1) { 18149566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 181537fa93a5SLois Curfman McInnes } else { 18169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 181804ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1819fff043a9SJunchao Zhang v = amata; 182004ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18219371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18229371c9d4SSatish Balay v++; 182304ca555eSLois Curfman McInnes } 1824fff043a9SJunchao Zhang v = bmata; 182504ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18269371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18279371c9d4SSatish Balay v++; 182804ca555eSLois Curfman McInnes } 18291c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18308f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18319566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18323a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1833329f5518SBarry Smith PetscReal *tmp, *tmp2; 1834b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18359566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 18369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2)); 183704ca555eSLois Curfman McInnes *norm = 0.0; 18389371c9d4SSatish Balay v = amata; 18399371c9d4SSatish Balay jj = amat->j; 184004ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18419371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18429371c9d4SSatish Balay v++; 184304ca555eSLois Curfman McInnes } 18449371c9d4SSatish Balay v = bmata; 18459371c9d4SSatish Balay jj = bmat->j; 184604ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18479371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18489371c9d4SSatish Balay v++; 184904ca555eSLois Curfman McInnes } 18501c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1851d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 185204ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 185304ca555eSLois Curfman McInnes } 18549566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18559566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 18569566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18573a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1858329f5518SBarry Smith PetscReal ntemp = 0.0; 1859d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18608e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186104ca555eSLois Curfman McInnes sum = 0.0; 186204ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18639371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18649371c9d4SSatish Balay v++; 186504ca555eSLois Curfman McInnes } 18668e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186704ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18689371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18699371c9d4SSatish Balay v++; 187004ca555eSLois Curfman McInnes } 1871515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187204ca555eSLois Curfman McInnes } 18731c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18749566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1875ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 187837fa93a5SLois Curfman McInnes } 18793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1880855ac2c5SLois Curfman McInnes } 1881855ac2c5SLois Curfman McInnes 1882ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1883d71ae5a4SJacob Faibussowitsch { 1884a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1885a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1886071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1887071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1888a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1889ce496241SStefano Zampini const MatScalar *pbv, *bv; 1890b7c46309SBarry Smith 18913a40ed3dSBarry Smith PetscFunctionBegin; 18927fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18939371c9d4SSatish Balay ma = A->rmap->n; 18949371c9d4SSatish Balay na = A->cmap->n; 18959371c9d4SSatish Balay mb = a->B->rmap->n; 18969371c9d4SSatish Balay nb = a->B->cmap->n; 18979371c9d4SSatish Balay ai = Aloc->i; 18989371c9d4SSatish Balay aj = Aloc->j; 18999371c9d4SSatish Balay bi = Bloc->i; 19009371c9d4SSatish Balay bj = Bloc->j; 1901fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190280bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 190380bcc5a1SJed Brown PetscSFNode *oloc; 1904713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190580bcc5a1SJed Brown 19069566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190780bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19089566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1909cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191080bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19119566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191280bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 191380bcc5a1SJed Brown /* map those to global */ 19149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19169566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19179566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 191857168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 191957168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19209566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1921d4bb536fSBarry Smith 19229566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 19249566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 19259566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19269566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19279566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1928fc4dec0aSBarry Smith } else { 1929fc4dec0aSBarry Smith B = *matout; 19309566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1931fc4dec0aSBarry Smith } 1932b7c46309SBarry Smith 1933f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1934a8661f62Sandi selinger A_diag = a->A; 1935a8661f62Sandi selinger B_diag = &b->A; 1936a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1937a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1938a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1939a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1940f79cb1a0Sandi selinger 1941f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1942ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1943f79cb1a0Sandi selinger 19444cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1945a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19467fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19479566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1948f79cb1a0Sandi selinger 1949b7c46309SBarry Smith /* copy over the B part */ 19509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1952ce496241SStefano Zampini pbv = bv; 1953d0f46423SBarry Smith row = A->rmap->rstart; 19542205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195561a2fbbaSHong Zhang cols_tmp = cols; 1956da668accSHong Zhang for (i = 0; i < mb; i++) { 1957da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19589566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19592205254eSKarl Rupp row++; 1960720a2405SPierre Jolivet if (pbv) pbv += ncol; 1961720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1962b7c46309SBarry Smith } 19639566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1965fc73b1b3SBarry Smith 19669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1968cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19690de55854SLois Curfman McInnes *matout = B; 19700de55854SLois Curfman McInnes } else { 19719566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19720de55854SLois Curfman McInnes } 19733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1974b7c46309SBarry Smith } 1975b7c46309SBarry Smith 1976ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1977d71ae5a4SJacob Faibussowitsch { 19784b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19794b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1980b1d57f15SBarry Smith PetscInt s1, s2, s3; 1981a008b906SSatish Balay 19823a40ed3dSBarry Smith PetscFunctionBegin; 19839566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19844b967eb1SSatish Balay if (rr) { 19859566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198608401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19874b967eb1SSatish Balay /* Overlap communication with computation. */ 19889566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1989a008b906SSatish Balay } 19904b967eb1SSatish Balay if (ll) { 19919566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199208401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1993dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19944b967eb1SSatish Balay } 19954b967eb1SSatish Balay /* scale the diagonal block */ 1996dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19974b967eb1SSatish Balay 19984b967eb1SSatish Balay if (rr) { 19994b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20009566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2001dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20024b967eb1SSatish Balay } 20033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2004a008b906SSatish Balay } 2005a008b906SSatish Balay 2006ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2007d71ae5a4SJacob Faibussowitsch { 2008bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20093a40ed3dSBarry Smith 20103a40ed3dSBarry Smith PetscFunctionBegin; 20119566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2013bb5a7306SBarry Smith } 2014bb5a7306SBarry Smith 2015ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2016d71ae5a4SJacob Faibussowitsch { 2017d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2018d4bb536fSBarry Smith Mat a, b, c, d; 2019ace3abfcSBarry Smith PetscBool flg; 2020d4bb536fSBarry Smith 20213a40ed3dSBarry Smith PetscFunctionBegin; 20229371c9d4SSatish Balay a = matA->A; 20239371c9d4SSatish Balay b = matA->B; 20249371c9d4SSatish Balay c = matB->A; 20259371c9d4SSatish Balay d = matB->B; 2026d4bb536fSBarry Smith 20279566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 202848a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 20291c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2031d4bb536fSBarry Smith } 2032d4bb536fSBarry Smith 2033ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2034d71ae5a4SJacob Faibussowitsch { 2035cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2036cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2037cb5b572fSBarry Smith 2038cb5b572fSBarry Smith PetscFunctionBegin; 203933f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204033f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2041cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2042cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2043cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2044cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2045cb5b572fSBarry Smith then copying the submatrices */ 20469566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2047cb5b572fSBarry Smith } else { 20489566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20499566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2050cb5b572fSBarry Smith } 20519566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2053cb5b572fSBarry Smith } 2054cb5b572fSBarry Smith 2055001ddc4fSHong Zhang /* 2056001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2057001ddc4fSHong Zhang have different nonzero structure. 2058001ddc4fSHong Zhang */ 2059d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2060d71ae5a4SJacob Faibussowitsch { 2061001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206295b7e79eSJed Brown 206395b7e79eSJed Brown PetscFunctionBegin; 206495b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206595b7e79eSJed Brown for (i = 0; i < m; i++) { 20668e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2067001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2068001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 206995b7e79eSJed Brown nnz[i] = 0; 207095b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2071001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2072001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 207395b7e79eSJed Brown nnz[i]++; 207495b7e79eSJed Brown } 207595b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207695b7e79eSJed Brown } 20773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207895b7e79eSJed Brown } 207995b7e79eSJed Brown 2080001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2081d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2082d71ae5a4SJacob Faibussowitsch { 2083001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2084001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2085001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2086001ddc4fSHong Zhang 2087001ddc4fSHong Zhang PetscFunctionBegin; 20889566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2090001ddc4fSHong Zhang } 2091001ddc4fSHong Zhang 2092ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2093d71ae5a4SJacob Faibussowitsch { 2094ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2095ac90fabeSBarry Smith 2096ac90fabeSBarry Smith PetscFunctionBegin; 2097ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20989566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 20999566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2100ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21019566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2102ac90fabeSBarry Smith } else { 21039f5f6813SShri Abhyankar Mat B; 21049f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2105d9d719b4SStefano Zampini 21069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21099566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21109566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21119566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21129566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21139566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21149566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21159566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21169566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21179566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21189566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2119ac90fabeSBarry Smith } 21203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2121ac90fabeSBarry Smith } 2122ac90fabeSBarry Smith 21232726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2124354c94deSBarry Smith 2125ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2126d71ae5a4SJacob Faibussowitsch { 21275f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21285f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2129354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2130354c94deSBarry Smith 21319566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21329566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21335f80ce2aSJacob Faibussowitsch } 21343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2135354c94deSBarry Smith } 2136354c94deSBarry Smith 2137ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2138d71ae5a4SJacob Faibussowitsch { 213999cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214099cafbc1SBarry Smith 214199cafbc1SBarry Smith PetscFunctionBegin; 21429566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21439566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214599cafbc1SBarry Smith } 214699cafbc1SBarry Smith 2147ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2148d71ae5a4SJacob Faibussowitsch { 214999cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215099cafbc1SBarry Smith 215199cafbc1SBarry Smith PetscFunctionBegin; 21529566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21539566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215599cafbc1SBarry Smith } 215699cafbc1SBarry Smith 2157ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2158d71ae5a4SJacob Faibussowitsch { 2159c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2160475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 2161475b8b61SHong Zhang PetscScalar *va, *vv; 2162475b8b61SHong Zhang Vec vB, vA; 2163475b8b61SHong Zhang const PetscScalar *vb; 2164c91732d9SHong Zhang 2165c91732d9SHong Zhang PetscFunctionBegin; 21669566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 21679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2168475b8b61SHong Zhang 21699566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 2170c91732d9SHong Zhang if (idx) { 2171475b8b61SHong Zhang for (i = 0; i < m; i++) { 2172d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2173c91732d9SHong Zhang } 2174c91732d9SHong Zhang } 2175c91732d9SHong Zhang 21769566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 21779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2179c91732d9SHong Zhang 21809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2182475b8b61SHong Zhang for (i = 0; i < m; i++) { 2183c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2184475b8b61SHong Zhang vv[i] = vb[i]; 2185c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2186475b8b61SHong Zhang } else { 2187475b8b61SHong Zhang vv[i] = va[i]; 21889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2189c91732d9SHong Zhang } 2190c91732d9SHong Zhang } 21919566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 21929566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 21939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2198c91732d9SHong Zhang } 2199c91732d9SHong Zhang 2200eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2201eede4a3fSMark Adams { 2202eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2203eede4a3fSMark Adams PetscInt m = A->rmap->n; 2204eede4a3fSMark Adams Vec vB, vA; 2205eede4a3fSMark Adams 2206eede4a3fSMark Adams PetscFunctionBegin; 2207eede4a3fSMark Adams PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 2208eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2209eede4a3fSMark Adams PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 2210eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2211eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2212eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2213eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2214eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2215eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2216eede4a3fSMark Adams } 2217eede4a3fSMark Adams 2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2219d71ae5a4SJacob Faibussowitsch { 2220f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2221f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2222f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2223f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2224f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2225f07e67edSHong Zhang Vec diagV, offdiagV; 2226ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2227ce496241SStefano Zampini const PetscScalar *ba, *bav; 2228f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2229f07e67edSHong Zhang Mat B = mat->B; 2230f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2231c87e5d42SMatthew Knepley 2232c87e5d42SMatthew Knepley PetscFunctionBegin; 2233f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2234f07e67edSHong Zhang if (A->cmap->N == n) { 22359566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22369566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22379566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2241f07e67edSHong Zhang } else if (n == 0) { 2242f07e67edSHong Zhang if (m) { 22439566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22449371c9d4SSatish Balay for (r = 0; r < m; r++) { 22459371c9d4SSatish Balay a[r] = 0.0; 22469371c9d4SSatish Balay if (idx) idx[r] = -1; 22479371c9d4SSatish Balay } 22489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2249f07e67edSHong Zhang } 22503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2251f07e67edSHong Zhang } 2252f07e67edSHong Zhang 22539566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22549566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22559566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22569566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2257f07e67edSHong Zhang 2258f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2260ce496241SStefano Zampini ba = bav; 2261f07e67edSHong Zhang bi = b->i; 2262f07e67edSHong Zhang bj = b->j; 22639566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2264f07e67edSHong Zhang for (r = 0; r < m; r++) { 2265f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2266f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22679371c9d4SSatish Balay offdiagA[r] = *ba; 22689371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2269f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2270f07e67edSHong Zhang offdiagA[r] = 0.0; 2271f07e67edSHong Zhang 2272f07e67edSHong Zhang /* Find first hole in the cmap */ 2273f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2274f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2275f07e67edSHong Zhang if (col > j && j < cstart) { 2276f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2277f07e67edSHong Zhang break; 2278f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2279f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2280f07e67edSHong Zhang break; 2281f07e67edSHong Zhang } 2282f07e67edSHong Zhang } 22834e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2284f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2285f07e67edSHong Zhang if (ncols == 0) { 2286f07e67edSHong Zhang if (cstart) { 2287f07e67edSHong Zhang offdiagIdx[r] = 0; 2288f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2289f07e67edSHong Zhang } else { /* ncols > 0 */ 2290f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2291f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2292f07e67edSHong Zhang } 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang } 2295f07e67edSHong Zhang 2296f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22979371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22989371c9d4SSatish Balay offdiagA[r] = *ba; 22999371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 23009371c9d4SSatish Balay } 23019371c9d4SSatish Balay ba++; 23029371c9d4SSatish Balay bj++; 2303f07e67edSHong Zhang } 2304f07e67edSHong Zhang } 2305f07e67edSHong Zhang 23069566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23079566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2308f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2309f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2310f07e67edSHong Zhang a[r] = diagA[r]; 2311f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2312f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2313f07e67edSHong Zhang a[r] = diagA[r]; 2314c87e5d42SMatthew Knepley if (idx) { 2315f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2316f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2317f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2318f07e67edSHong Zhang } 2319f07e67edSHong Zhang } else { 2320f07e67edSHong Zhang a[r] = offdiagA[r]; 2321f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2322c87e5d42SMatthew Knepley } 2323c87e5d42SMatthew Knepley } 23249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23309566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2332c87e5d42SMatthew Knepley } 2333c87e5d42SMatthew Knepley 2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2335d71ae5a4SJacob Faibussowitsch { 233603bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2337fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2338fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233903bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 234003bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 234103bc72f1SMatthew Knepley Vec diagV, offdiagV; 2342ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2343ce496241SStefano Zampini const PetscScalar *ba, *bav; 2344fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2345fa213d2fSHong Zhang Mat B = mat->B; 2346fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234703bc72f1SMatthew Knepley 234803bc72f1SMatthew Knepley PetscFunctionBegin; 2349fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2350fa213d2fSHong Zhang if (A->cmap->N == n) { 23519566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23529566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23539566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2357fa213d2fSHong Zhang } else if (n == 0) { 2358fa213d2fSHong Zhang if (m) { 23599566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23609371c9d4SSatish Balay for (r = 0; r < m; r++) { 23619371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23629371c9d4SSatish Balay if (idx) idx[r] = -1; 23639371c9d4SSatish Balay } 23649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2365fa213d2fSHong Zhang } 23663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2367fa213d2fSHong Zhang } 2368fa213d2fSHong Zhang 23699566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23709566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23719566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23729566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2373fa213d2fSHong Zhang 2374fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2376ce496241SStefano Zampini ba = bav; 2377fa213d2fSHong Zhang bi = b->i; 2378fa213d2fSHong Zhang bj = b->j; 23799566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2380fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2381fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2382fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23839371c9d4SSatish Balay offdiagA[r] = *ba; 23849371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2385fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2386fa213d2fSHong Zhang offdiagA[r] = 0.0; 2387fa213d2fSHong Zhang 2388fa213d2fSHong Zhang /* Find first hole in the cmap */ 2389fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2390fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2391fa213d2fSHong Zhang if (col > j && j < cstart) { 2392fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2393fa213d2fSHong Zhang break; 2394fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2395fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2396fa213d2fSHong Zhang break; 2397fa213d2fSHong Zhang } 2398fa213d2fSHong Zhang } 23994e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2400fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2401fa213d2fSHong Zhang if (ncols == 0) { 2402fa213d2fSHong Zhang if (cstart) { 2403fa213d2fSHong Zhang offdiagIdx[r] = 0; 2404fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2405fa213d2fSHong Zhang } else { /* ncols > 0 */ 2406fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2407fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2408fa213d2fSHong Zhang } 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang } 2411fa213d2fSHong Zhang 2412fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24139371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24149371c9d4SSatish Balay offdiagA[r] = *ba; 24159371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24169371c9d4SSatish Balay } 24179371c9d4SSatish Balay ba++; 24189371c9d4SSatish Balay bj++; 2419fa213d2fSHong Zhang } 2420fa213d2fSHong Zhang } 2421fa213d2fSHong Zhang 24229566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2424fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2425fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242603bc72f1SMatthew Knepley a[r] = diagA[r]; 2427fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2428fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2429fa213d2fSHong Zhang a[r] = diagA[r]; 2430fa213d2fSHong Zhang if (idx) { 2431fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 243203bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2433fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2434fa213d2fSHong Zhang } 243503bc72f1SMatthew Knepley } else { 243603bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2437fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243803bc72f1SMatthew Knepley } 243903bc72f1SMatthew Knepley } 24409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24469566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244803bc72f1SMatthew Knepley } 244903bc72f1SMatthew Knepley 2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2451d71ae5a4SJacob Faibussowitsch { 2452c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24531a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24541a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2455c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2456c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2457c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2458ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2459ce496241SStefano Zampini const PetscScalar *ba, *bav; 24601a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24611a254869SHong Zhang Mat B = mat->B; 24621a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2463c87e5d42SMatthew Knepley 2464c87e5d42SMatthew Knepley PetscFunctionBegin; 24651a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24661a254869SHong Zhang if (A->cmap->N == n) { 24679566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24689566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24699566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24719566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24731a254869SHong Zhang } else if (n == 0) { 24741a254869SHong Zhang if (m) { 24759566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24769371c9d4SSatish Balay for (r = 0; r < m; r++) { 24779371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24789371c9d4SSatish Balay if (idx) idx[r] = -1; 24799371c9d4SSatish Balay } 24809566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24811a254869SHong Zhang } 24823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24831a254869SHong Zhang } 24841a254869SHong Zhang 24859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24869566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24879566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24889566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24891a254869SHong Zhang 24901a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2492ce496241SStefano Zampini ba = bav; 24931a254869SHong Zhang bi = b->i; 24941a254869SHong Zhang bj = b->j; 24959566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24961a254869SHong Zhang for (r = 0; r < m; r++) { 24971a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24981a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24999371c9d4SSatish Balay offdiagA[r] = *ba; 25009371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 25011a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 25021a254869SHong Zhang offdiagA[r] = 0.0; 25031a254869SHong Zhang 25041a254869SHong Zhang /* Find first hole in the cmap */ 25051a254869SHong Zhang for (j = 0; j < ncols; j++) { 25061a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25071a254869SHong Zhang if (col > j && j < cstart) { 25081a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25091a254869SHong Zhang break; 25101a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25111a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25121a254869SHong Zhang break; 25131a254869SHong Zhang } 25141a254869SHong Zhang } 25154e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25161a254869SHong Zhang /* a hole is outside compressed Bcols */ 25171a254869SHong Zhang if (ncols == 0) { 25181a254869SHong Zhang if (cstart) { 25191a254869SHong Zhang offdiagIdx[r] = 0; 25201a254869SHong Zhang } else offdiagIdx[r] = cend; 25211a254869SHong Zhang } else { /* ncols > 0 */ 25221a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25231a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25241a254869SHong Zhang } 25251a254869SHong Zhang } 25261a254869SHong Zhang } 25271a254869SHong Zhang 25281a254869SHong Zhang for (j = 0; j < ncols; j++) { 25299371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25309371c9d4SSatish Balay offdiagA[r] = *ba; 25319371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25329371c9d4SSatish Balay } 25339371c9d4SSatish Balay ba++; 25349371c9d4SSatish Balay bj++; 25351a254869SHong Zhang } 25361a254869SHong Zhang } 25371a254869SHong Zhang 25389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25399566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25401a254869SHong Zhang for (r = 0; r < m; ++r) { 25411a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2542c87e5d42SMatthew Knepley a[r] = diagA[r]; 25431a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25441a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25451a254869SHong Zhang a[r] = diagA[r]; 25461a254869SHong Zhang if (idx) { 25471a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2548c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25491a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25501a254869SHong Zhang } 2551c87e5d42SMatthew Knepley } else { 2552c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25531a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2554c87e5d42SMatthew Knepley } 2555c87e5d42SMatthew Knepley } 25569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25629566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2564c87e5d42SMatthew Knepley } 2565c87e5d42SMatthew Knepley 2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2567d71ae5a4SJacob Faibussowitsch { 2568f6d58c54SBarry Smith Mat *dummy; 25695494a064SHong Zhang 25705494a064SHong Zhang PetscFunctionBegin; 25719566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2572f6d58c54SBarry Smith *newmat = *dummy; 25739566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25755494a064SHong Zhang } 25765494a064SHong Zhang 2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2578d71ae5a4SJacob Faibussowitsch { 2579bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2580bbead8a2SBarry Smith 2581bbead8a2SBarry Smith PetscFunctionBegin; 25829566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25837b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2585bbead8a2SBarry Smith } 2586bbead8a2SBarry Smith 2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2588d71ae5a4SJacob Faibussowitsch { 258973a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 259073a71a0fSBarry Smith 259173a71a0fSBarry Smith PetscFunctionBegin; 259208401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25939566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2594679944adSJunchao Zhang if (x->assembled) { 25959566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2596679944adSJunchao Zhang } else { 25979566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2598679944adSJunchao Zhang } 25999566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 26009566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 26013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260273a71a0fSBarry Smith } 2603bbead8a2SBarry Smith 2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2605d71ae5a4SJacob Faibussowitsch { 2606b1b1104fSBarry Smith PetscFunctionBegin; 2607b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2608b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2610b1b1104fSBarry Smith } 2611b1b1104fSBarry Smith 2612b1b1104fSBarry Smith /*@ 2613f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2614f2afee66SBarry Smith 26152ef1f0ffSBarry Smith Not Collective 2616f2afee66SBarry Smith 2617f2afee66SBarry Smith Input Parameter: 2618f2afee66SBarry Smith . A - the matrix 2619f2afee66SBarry Smith 2620f2afee66SBarry Smith Output Parameter: 2621f2afee66SBarry Smith . nz - the number of nonzeros 2622f2afee66SBarry Smith 2623f2afee66SBarry Smith Level: advanced 2624f2afee66SBarry Smith 2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2626f2afee66SBarry Smith @*/ 2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2628d71ae5a4SJacob Faibussowitsch { 2629f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2630f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2631dfebb78cSStefano Zampini PetscBool isaij; 2632f2afee66SBarry Smith 2633f2afee66SBarry Smith PetscFunctionBegin; 2634dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2635dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2636f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2638f2afee66SBarry Smith } 2639f2afee66SBarry Smith 2640f2afee66SBarry Smith /*@ 2641b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2642b1b1104fSBarry Smith 2643c3339decSBarry Smith Collective 2644b1b1104fSBarry Smith 2645b1b1104fSBarry Smith Input Parameters: 2646b1b1104fSBarry Smith + A - the matrix 264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2648b1b1104fSBarry Smith 264996a0c994SBarry Smith Level: advanced 265096a0c994SBarry Smith 2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2652b1b1104fSBarry Smith @*/ 2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2654d71ae5a4SJacob Faibussowitsch { 2655b1b1104fSBarry Smith PetscFunctionBegin; 2656cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2658b1b1104fSBarry Smith } 2659b1b1104fSBarry Smith 2660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject) 2661d71ae5a4SJacob Faibussowitsch { 2662b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2663b1b1104fSBarry Smith 2664b1b1104fSBarry Smith PetscFunctionBegin; 2665d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2666b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26679566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26681baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2669d0609cedSBarry Smith PetscOptionsHeadEnd(); 26703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2671b1b1104fSBarry Smith } 2672b1b1104fSBarry Smith 2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2674d71ae5a4SJacob Faibussowitsch { 26757d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2676c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26777d68702bSBarry Smith 26787d68702bSBarry Smith PetscFunctionBegin; 2679c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26809566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26815519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2682b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2684b83222d8SBarry Smith aij->nonew = nonew; 26857d68702bSBarry Smith } 26869566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26887d68702bSBarry Smith } 26897d68702bSBarry Smith 2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2691d71ae5a4SJacob Faibussowitsch { 26923b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26933b49f96aSBarry Smith 26943b49f96aSBarry Smith PetscFunctionBegin; 269508401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26969566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26973b49f96aSBarry Smith if (d) { 26983b49f96aSBarry Smith PetscInt rstart; 26999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 27003b49f96aSBarry Smith *d += rstart; 27013b49f96aSBarry Smith } 27023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27033b49f96aSBarry Smith } 27043b49f96aSBarry Smith 2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2706d71ae5a4SJacob Faibussowitsch { 2707a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2708a8ee9fb5SBarry Smith 2709a8ee9fb5SBarry Smith PetscFunctionBegin; 27109566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2712a8ee9fb5SBarry Smith } 27133b49f96aSBarry Smith 271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2715dec0b466SHong Zhang { 2716dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2717dec0b466SHong Zhang 2718dec0b466SHong Zhang PetscFunctionBegin; 271958c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 272058c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2722dec0b466SHong Zhang } 2723dec0b466SHong Zhang 2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2725cda55fadSBarry Smith MatGetRow_MPIAIJ, 2726cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2727cda55fadSBarry Smith MatMult_MPIAIJ, 272897304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27297c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27307c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2731f4259b30SLisandro Dalcin NULL, 2732f4259b30SLisandro Dalcin NULL, 2733f4259b30SLisandro Dalcin NULL, 2734f4259b30SLisandro Dalcin /*10*/ NULL, 2735f4259b30SLisandro Dalcin NULL, 2736f4259b30SLisandro Dalcin NULL, 273741f059aeSBarry Smith MatSOR_MPIAIJ, 2738b7c46309SBarry Smith MatTranspose_MPIAIJ, 273997304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2740cda55fadSBarry Smith MatEqual_MPIAIJ, 2741cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2742cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2743cda55fadSBarry Smith MatNorm_MPIAIJ, 274497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2745cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2746cda55fadSBarry Smith MatSetOption_MPIAIJ, 2747cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2748d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2749f4259b30SLisandro Dalcin NULL, 2750f4259b30SLisandro Dalcin NULL, 2751f4259b30SLisandro Dalcin NULL, 2752f4259b30SLisandro Dalcin NULL, 275326cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2754f4259b30SLisandro Dalcin NULL, 2755f4259b30SLisandro Dalcin NULL, 2756a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2757f4259b30SLisandro Dalcin NULL, 2758d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2759f4259b30SLisandro Dalcin NULL, 2760f4259b30SLisandro Dalcin NULL, 2761f4259b30SLisandro Dalcin NULL, 2762f4259b30SLisandro Dalcin NULL, 2763d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27647dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2765cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2766cda55fadSBarry Smith MatGetValues_MPIAIJ, 2767cb5b572fSBarry Smith MatCopy_MPIAIJ, 2768d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2769cda55fadSBarry Smith MatScale_MPIAIJ, 27707d68702bSBarry Smith MatShift_MPIAIJ, 277199e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2772564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 277373a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27748a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27758a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2776f4259b30SLisandro Dalcin NULL, 2777f4259b30SLisandro Dalcin NULL, 277893dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2779f4259b30SLisandro Dalcin NULL, 2780cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 278172e6a0cfSJed Brown MatPermute_MPIAIJ, 2782f4259b30SLisandro Dalcin NULL, 27837dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2784e03a110bSBarry Smith MatDestroy_MPIAIJ, 2785e03a110bSBarry Smith MatView_MPIAIJ, 2786f4259b30SLisandro Dalcin NULL, 2787f4259b30SLisandro Dalcin NULL, 2788f4259b30SLisandro Dalcin /*64*/ NULL, 2789f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 2792f4259b30SLisandro Dalcin NULL, 2793d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2794c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2795f4259b30SLisandro Dalcin NULL, 2796f4259b30SLisandro Dalcin NULL, 2797f4259b30SLisandro Dalcin NULL, 2798f4259b30SLisandro Dalcin NULL, 27993acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2800b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2801f4259b30SLisandro Dalcin NULL, 2802f4259b30SLisandro Dalcin NULL, 2803f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2804f4259b30SLisandro Dalcin /*80*/ NULL, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin NULL, 28075bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 2808a3bbdb47SHong Zhang MatIsSymmetric_MPIAIJ, 2809f4259b30SLisandro Dalcin NULL, 2810f4259b30SLisandro Dalcin NULL, 2811f4259b30SLisandro Dalcin NULL, 2812f4259b30SLisandro Dalcin NULL, 2813f4259b30SLisandro Dalcin /*89*/ NULL, 2814f4259b30SLisandro Dalcin NULL, 281526be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2816f4259b30SLisandro Dalcin NULL, 2817f4259b30SLisandro Dalcin NULL, 2818cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2819f4259b30SLisandro Dalcin NULL, 2820f4259b30SLisandro Dalcin NULL, 2821f4259b30SLisandro Dalcin NULL, 2822b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28234222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2824f4259b30SLisandro Dalcin NULL, 2825f4259b30SLisandro Dalcin NULL, 28262fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2827f4259b30SLisandro Dalcin NULL, 2828d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 282999cafbc1SBarry Smith MatRealPart_MPIAIJ, 283069db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2831f4259b30SLisandro Dalcin NULL, 2832f4259b30SLisandro Dalcin NULL, 2833f4259b30SLisandro Dalcin /*109*/ NULL, 2834f4259b30SLisandro Dalcin NULL, 28355494a064SHong Zhang MatGetRowMin_MPIAIJ, 2836f4259b30SLisandro Dalcin NULL, 28373b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2838d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2839f4259b30SLisandro Dalcin NULL, 2840c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2841f4259b30SLisandro Dalcin NULL, 2842f4259b30SLisandro Dalcin NULL, 2843b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2844f4259b30SLisandro Dalcin NULL, 2845f4259b30SLisandro Dalcin NULL, 2846f4259b30SLisandro Dalcin NULL, 2847b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2848f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2849a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2850bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2851a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28527dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2853f4259b30SLisandro Dalcin /*129*/ NULL, 2854f4259b30SLisandro Dalcin NULL, 2855f4259b30SLisandro Dalcin NULL, 2856187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2857f4259b30SLisandro Dalcin NULL, 2858f4259b30SLisandro Dalcin /*134*/ NULL, 2859f4259b30SLisandro Dalcin NULL, 2860f4259b30SLisandro Dalcin NULL, 2861f4259b30SLisandro Dalcin NULL, 2862f4259b30SLisandro Dalcin NULL, 286346533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2864f4259b30SLisandro Dalcin NULL, 2865f4259b30SLisandro Dalcin NULL, 28669c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2867a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28684222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2869f4259b30SLisandro Dalcin /*145*/ NULL, 2870f4259b30SLisandro Dalcin NULL, 287172833a62Smarkadams4 NULL, 287272833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28732d776b49SBarry Smith NULL, 2874dec0b466SHong Zhang /*150*/ NULL, 2875eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 2876eede4a3fSMark Adams MatGetRowSumAbs_MPIAIJ}; 287736ce4990SBarry Smith 2878ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2879d71ae5a4SJacob Faibussowitsch { 28802e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28812e8a6d31SBarry Smith 28822e8a6d31SBarry Smith PetscFunctionBegin; 28839566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28849566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28862e8a6d31SBarry Smith } 28872e8a6d31SBarry Smith 2888ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2889d71ae5a4SJacob Faibussowitsch { 28902e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28912e8a6d31SBarry Smith 28922e8a6d31SBarry Smith PetscFunctionBegin; 28939566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28949566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28962e8a6d31SBarry Smith } 28978a729477SBarry Smith 2898d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2899d71ae5a4SJacob Faibussowitsch { 2900ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29015d2a9ed1SStefano Zampini PetscMPIInt size; 2902a23d5eceSKris Buschelman 2903a23d5eceSKris Buschelman PetscFunctionBegin; 2904ad79cf63SBarry Smith if (B->hash_active) { 2905aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2906ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2907ad79cf63SBarry Smith } 29089566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29099566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2910899cda47SBarry Smith 2911cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2912eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2913cb7b82ddSBarry Smith #else 29149566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2915cb7b82ddSBarry Smith #endif 29169566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29179566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29189566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2919cb7b82ddSBarry Smith 29209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2921c508b908SBarry Smith 2922c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29239566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29249566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29259566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29269566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29279566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2928c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2929cb7b82ddSBarry Smith 2930c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2931ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29329566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29339566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29349566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29359566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2936c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2937899cda47SBarry Smith 29389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2940526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2941cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 294215001458SStefano Zampini B->assembled = PETSC_FALSE; 29433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2944a23d5eceSKris Buschelman } 2945a23d5eceSKris Buschelman 2946ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2947d71ae5a4SJacob Faibussowitsch { 2948ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2949846b4da1SFande Kong 2950846b4da1SFande Kong PetscFunctionBegin; 2951846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29529566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29539566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2954846b4da1SFande Kong 2955846b4da1SFande Kong #if defined(PETSC_USE_CTABLE) 2956eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2957846b4da1SFande Kong #else 29589566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2959846b4da1SFande Kong #endif 29609566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29629566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2963846b4da1SFande Kong 29649566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->A)); 29659566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->B)); 2966846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2967846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2968846b4da1SFande Kong B->assembled = PETSC_FALSE; 29693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2970846b4da1SFande Kong } 2971846b4da1SFande Kong 2972d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2973d71ae5a4SJacob Faibussowitsch { 2974d6dfbf8fSBarry Smith Mat mat; 2975416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2976d6dfbf8fSBarry Smith 29773a40ed3dSBarry Smith PetscFunctionBegin; 2978f4259b30SLisandro Dalcin *newmat = NULL; 29799566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29809566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29819566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29829566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2983273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2984e1b6402fSHong Zhang 2985d5f3da31SBarry Smith mat->factortype = matin->factortype; 2986501880eeSStefano Zampini mat->assembled = matin->assembled; 2987e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2988d6dfbf8fSBarry Smith 298917699dbbSLois Curfman McInnes a->size = oldmat->size; 299017699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2991e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2992e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2993501880eeSStefano Zampini a->rowindices = NULL; 2994501880eeSStefano Zampini a->rowvalues = NULL; 2995bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2996d6dfbf8fSBarry Smith 29979566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29989566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2999420957c1SBarry Smith if (matin->hash_active) { 3000420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3001420957c1SBarry Smith } else { 3002420957c1SBarry Smith mat->preallocated = matin->preallocated; 30032ee70a88SLois Curfman McInnes if (oldmat->colmap) { 3004aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3005eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3006b1fc9764SSatish Balay #else 30079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30089566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3009b1fc9764SSatish Balay #endif 3010501880eeSStefano Zampini } else a->colmap = NULL; 30113f41c07dSBarry Smith if (oldmat->garray) { 3012b1d57f15SBarry Smith PetscInt len; 3013d0f46423SBarry Smith len = oldmat->B->cmap->n; 30149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30159566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3016501880eeSStefano Zampini } else a->garray = NULL; 3017d6dfbf8fSBarry Smith 30180de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30190de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30200de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3021aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3022aa624791SPierre Jolivet if (oldmat->Mvctx) PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 30239566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30249566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3025420957c1SBarry Smith } 30269566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30278a729477SBarry Smith *newmat = mat; 30283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30298a729477SBarry Smith } 3030416022c9SBarry Smith 3031d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3032d71ae5a4SJacob Faibussowitsch { 303352f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 303452f91c60SVaclav Hapla 303552f91c60SVaclav Hapla PetscFunctionBegin; 303652f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 303752f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3038c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30399566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30409566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30419566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 304252f91c60SVaclav Hapla if (isbinary) { 30439566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 304452f91c60SVaclav Hapla } else if (ishdf5) { 304552f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30469566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 304752f91c60SVaclav Hapla #else 304852f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 304952f91c60SVaclav Hapla #endif 305052f91c60SVaclav Hapla } else { 305198921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 305252f91c60SVaclav Hapla } 30533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 305452f91c60SVaclav Hapla } 305552f91c60SVaclav Hapla 3056d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3057d71ae5a4SJacob Faibussowitsch { 30583ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30593ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30603ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30618fb81238SShri Abhyankar 30628fb81238SShri Abhyankar PetscFunctionBegin; 30639566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30648fb81238SShri Abhyankar 30653ea6fe3dSLisandro Dalcin /* read in matrix header */ 30669566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 306708401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30689371c9d4SSatish Balay M = header[1]; 30699371c9d4SSatish Balay N = header[2]; 30709371c9d4SSatish Balay nz = header[3]; 307108401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 307208401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 307308401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 307408ea439dSMark F. Adams 30753ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30769566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30773ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30783ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30793ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30809566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30819566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30828fb81238SShri Abhyankar 30833ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30849566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3085aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30868fb81238SShri Abhyankar 30873ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30889566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30909566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30919371c9d4SSatish Balay rowidxs[0] = 0; 30929371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 309338b83642SBarry Smith if (nz != PETSC_MAX_INT) { 30941c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 309508401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 309638b83642SBarry Smith } 309738b83642SBarry Smith 30983ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 30999566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 31009566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 31019566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 31023ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 31039566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 31049566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31059566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31078fb81238SShri Abhyankar } 31088fb81238SShri Abhyankar 31093782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3110ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3111d71ae5a4SJacob Faibussowitsch { 31124aa3045dSJed Brown IS iscol_local; 3113c5e4d11fSDmitry Karpeev PetscBool isstride; 3114c5e4d11fSDmitry Karpeev PetscMPIInt lisstride = 0, gisstride; 31153782ecc7SHong Zhang 31163782ecc7SHong Zhang PetscFunctionBegin; 31173782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31189566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31193782ecc7SHong Zhang 3120c5e4d11fSDmitry Karpeev if (isstride) { 3121c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31229566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31239566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31249566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 3125c5e4d11fSDmitry Karpeev if (mstart == start && mlen - mstart == len) lisstride = 1; 3126c5e4d11fSDmitry Karpeev } 31273782ecc7SHong Zhang 31281c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3129c5e4d11fSDmitry Karpeev if (gisstride) { 3130c5e4d11fSDmitry Karpeev PetscInt N; 31319566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31329566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31339566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31349566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3135c5e4d11fSDmitry Karpeev } else { 3136c5bfad50SMark F. Adams PetscInt cbs; 31379566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31389566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31399566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3140b79d0421SJed Brown } 31413782ecc7SHong Zhang 31423782ecc7SHong Zhang *isseq = iscol_local; 31433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3144c5e4d11fSDmitry Karpeev } 31458d2139bdSHong Zhang 3146ddfdf956SHong Zhang /* 31479c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31489c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3149ddfdf956SHong Zhang 3150ddfdf956SHong Zhang Input Parameters: 315127430b45SBarry Smith + mat - matrix 315227430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31539c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 315427430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3155ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 315627430b45SBarry Smith 315727430b45SBarry Smith Output Parameters: 315827430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 315927430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 316027430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 316127430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3162ddfdf956SHong Zhang */ 3163ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[]) 3164d71ae5a4SJacob Faibussowitsch { 3165040216a4SHong Zhang Vec x, cmap; 3166040216a4SHong Zhang const PetscInt *is_idx; 3167040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31689c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3169040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3170040216a4SHong Zhang Mat B = a->B; 3171040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3172a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31738b3fa1f7SHong Zhang MPI_Comm comm; 31743a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31753782ecc7SHong Zhang 31763782ecc7SHong Zhang PetscFunctionBegin; 31779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31789566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31798b3fa1f7SHong Zhang 3180ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31819566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31829566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31839566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31849566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31850a351717SHong Zhang 31869c988bcaSHong Zhang /* Get start indices */ 31879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3188ddfdf956SHong Zhang isstart -= ncols; 31899566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3190040216a4SHong Zhang 31919566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31929566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31939566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3195ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31968b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3197ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 31989c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 31998b3fa1f7SHong Zhang } 32009566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 32019566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 32029566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 32038b3fa1f7SHong Zhang 32049c988bcaSHong Zhang /* Get iscol_d */ 32059566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32069566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32079566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3208feb78a15SHong Zhang 32099c988bcaSHong Zhang /* Get isrow_d */ 32109566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3211feb78a15SHong Zhang rstart = mat->rmap->rstart; 32129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32149c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32159566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3216feb78a15SHong Zhang 32179566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32189566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32199566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3220feb78a15SHong Zhang 32219c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32229566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32239566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3224ddfdf956SHong Zhang 32259566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 322607250d77SHong Zhang 32279566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32289566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 322964efcef9SHong Zhang 32309c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3231ddfdf956SHong Zhang /* off-process column indices */ 32329c988bcaSHong Zhang count = 0; 32339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3235feb78a15SHong Zhang 32369566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32379566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32388b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3239f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32409c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32411c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32421c645242SHong Zhang count++; 32438b3fa1f7SHong Zhang } 32448b3fa1f7SHong Zhang } 32459566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32469566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 324707250d77SHong Zhang 32489566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3249b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3250b6d9b4e0SHong Zhang 32519566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32529c988bcaSHong Zhang *garray = cmap1; 32539c988bcaSHong Zhang 32549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32559566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32569566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3258040216a4SHong Zhang } 3259040216a4SHong Zhang 3260b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3261d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3262d71ae5a4SJacob Faibussowitsch { 3263b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32641fd43edeSHong Zhang Mat M = NULL; 32653b00a383SHong Zhang MPI_Comm comm; 3266b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32673b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3268b20e2604SHong Zhang PetscInt n; 32693b00a383SHong Zhang 32703b00a383SHong Zhang PetscFunctionBegin; 32719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32723b00a383SHong Zhang 32733b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3274b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32759566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 327628b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32773b00a383SHong Zhang 32789566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 327928b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32803b00a383SHong Zhang 32819566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 328228b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32833b00a383SHong Zhang 3284b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3285b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32869566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32879566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 328848a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32913b00a383SHong Zhang 32923b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 32939c988bcaSHong Zhang const PetscInt *garray; 3294b20e2604SHong Zhang PetscInt BsubN; 32953b00a383SHong Zhang 3296b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32979566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 32983b00a383SHong Zhang 3299b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 33009566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 33019566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 33023b00a383SHong Zhang 33039c988bcaSHong Zhang /* Create submatrix M */ 33049566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M)); 33053b00a383SHong Zhang 3306b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3307b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33087cfce09cSHong Zhang 33099566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3310b20e2604SHong Zhang n = asub->B->cmap->N; 3311b20e2604SHong Zhang if (BsubN > n) { 3312c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33137cfce09cSHong Zhang const PetscInt *idx; 33149c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33159566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33167cfce09cSHong Zhang 33179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33187cfce09cSHong Zhang j = 0; 33199566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3320b20e2604SHong Zhang for (i = 0; i < n; i++) { 33217cfce09cSHong Zhang if (j >= BsubN) break; 33229c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33237cfce09cSHong Zhang 33249c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33257cfce09cSHong Zhang idx_new[i] = idx[j++]; 332698921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33277cfce09cSHong Zhang } 33289566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33297cfce09cSHong Zhang 33309566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33319566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33327cfce09cSHong Zhang 3333b20e2604SHong Zhang } else if (BsubN < n) { 333498921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3335b20e2604SHong Zhang } 33367cfce09cSHong Zhang 33379566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3338b20e2604SHong Zhang *submat = M; 33393b00a383SHong Zhang 3340e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33419566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33433b00a383SHong Zhang 33449566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33463b00a383SHong Zhang 33479566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33489566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33493b00a383SHong Zhang } 33503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33513b00a383SHong Zhang } 33523b00a383SHong Zhang 3353d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3354d71ae5a4SJacob Faibussowitsch { 33551358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33563782ecc7SHong Zhang PetscInt csize; 335718e627e3SHong Zhang PetscInt n, i, j, start, end; 33584a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33593782ecc7SHong Zhang MPI_Comm comm; 33603782ecc7SHong Zhang 33613782ecc7SHong Zhang PetscFunctionBegin; 3362bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3363a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33648f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33659566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3366d5761cdaSHong Zhang if (isrow_d) { 3367d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3368d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3369d5761cdaSHong Zhang } else { 33709566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3371d5761cdaSHong Zhang if (iscol_local) { 3372d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3373d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3374d5761cdaSHong Zhang } 3375d5761cdaSHong Zhang } 33768f69fa7bSHong Zhang } else { 3377e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 337818e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33799566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33803782ecc7SHong Zhang if (!n) { 338118e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33823782ecc7SHong Zhang } else { 33839566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33849566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3385ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33868f69fa7bSHong Zhang } 33873782ecc7SHong Zhang 3388e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 338918e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 339118e627e3SHong Zhang if (!n) { 339218e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 339318e627e3SHong Zhang } else { 33949566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33959566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 339618e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 339718e627e3SHong Zhang } 339818e627e3SHong Zhang 33999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 34001c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 340118e627e3SHong Zhang sameRowDist = tsameDist[0]; 340218e627e3SHong Zhang } 340318e627e3SHong Zhang 340418e627e3SHong Zhang if (sameRowDist) { 3405b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34063b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34079566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3409b20e2604SHong Zhang } else { /* sameRowDist */ 34103b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34111358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34121358a193SHong Zhang PetscBool sorted; 34139566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34149566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34159566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 341608401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34171358a193SHong Zhang 34189566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34191358a193SHong Zhang if (sorted) { 34201358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34219566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34233782ecc7SHong Zhang } 34241358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 342548c0d076SHong Zhang IS iscol_sub; 34269566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 342748c0d076SHong Zhang if (iscol_sub) { 34289566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 343048c0d076SHong Zhang } 34311358a193SHong Zhang } 34321358a193SHong Zhang } 34331358a193SHong Zhang } 34343782ecc7SHong Zhang 3435bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34363782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34379566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 343828b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34393782ecc7SHong Zhang } else { 344048a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34411358a193SHong Zhang } 34423782ecc7SHong Zhang 34439566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34449566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34458f69fa7bSHong Zhang 3446b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34479566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34489566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3449b79d0421SJed Brown } 34503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34514aa3045dSJed Brown } 34524aa3045dSJed Brown 3453feb78a15SHong Zhang /*@C 345411a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3455feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3456feb78a15SHong Zhang 3457d083f849SBarry Smith Collective 3458feb78a15SHong Zhang 3459feb78a15SHong Zhang Input Parameters: 3460feb78a15SHong Zhang + comm - MPI communicator 3461feb78a15SHong Zhang . A - "diagonal" portion of matrix 3462b20e2604SHong Zhang . B - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine 34632ef1f0ffSBarry Smith - garray - global index of `B` columns 3464feb78a15SHong Zhang 3465feb78a15SHong Zhang Output Parameter: 34662ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 346727430b45SBarry Smith 3468feb78a15SHong Zhang Level: advanced 3469feb78a15SHong Zhang 3470feb78a15SHong Zhang Notes: 347111a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 347211a5261eSBarry Smith 34732ef1f0ffSBarry Smith `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore. 3474feb78a15SHong Zhang 34751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3476feb78a15SHong Zhang @*/ 3477d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat) 3478d71ae5a4SJacob Faibussowitsch { 3479feb78a15SHong Zhang Mat_MPIAIJ *maij; 3480e489de8fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data, *bnew; 3481a5348796SHong Zhang PetscInt *oi = b->i, *oj = b->j, i, nz, col; 3482ce496241SStefano Zampini const PetscScalar *oa; 3483e489de8fSHong Zhang Mat Bnew; 3484feb78a15SHong Zhang PetscInt m, n, N; 34854ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3486feb78a15SHong Zhang 3487feb78a15SHong Zhang PetscFunctionBegin; 34889566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 34899566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 349008401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 349137a5e0faSPierre Jolivet PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3492b6d9b4e0SHong Zhang /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */ 349308401ef6SPierre Jolivet /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */ 3494feb78a15SHong Zhang 3495e489de8fSHong Zhang /* Get global columns of mat */ 34961c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm)); 3497feb78a15SHong Zhang 34989566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N)); 34994ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 35004ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 35014ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 35024ab4d6f4SRichard Tran Mills 350337a5e0faSPierre Jolivet if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3504feb78a15SHong Zhang maij = (Mat_MPIAIJ *)(*mat)->data; 3505feb78a15SHong Zhang 3506feb78a15SHong Zhang (*mat)->preallocated = PETSC_TRUE; 3507feb78a15SHong Zhang 35089566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 35099566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3510feb78a15SHong Zhang 3511e489de8fSHong Zhang /* Set A as diagonal portion of *mat */ 3512feb78a15SHong Zhang maij->A = A; 3513feb78a15SHong Zhang 3514a5348796SHong Zhang nz = oi[m]; 3515a5348796SHong Zhang for (i = 0; i < nz; i++) { 3516a5348796SHong Zhang col = oj[i]; 3517a5348796SHong Zhang oj[i] = garray[col]; 3518feb78a15SHong Zhang } 3519feb78a15SHong Zhang 3520e489de8fSHong Zhang /* Set Bnew as off-diagonal portion of *mat */ 35219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &oa)); 35229566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew)); 35239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &oa)); 3524e489de8fSHong Zhang bnew = (Mat_SeqAIJ *)Bnew->data; 3525e489de8fSHong Zhang bnew->maxnz = b->maxnz; /* allocated nonzeros of B */ 3526e489de8fSHong Zhang maij->B = Bnew; 3527d5761cdaSHong Zhang 352808401ef6SPierre Jolivet PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N); 3529d5761cdaSHong Zhang 3530e489de8fSHong Zhang b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */ 3531d5761cdaSHong Zhang b->free_a = PETSC_FALSE; 3532d5761cdaSHong Zhang b->free_ij = PETSC_FALSE; 35339566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 3534d5761cdaSHong Zhang 3535e489de8fSHong Zhang bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */ 3536e489de8fSHong Zhang bnew->free_a = PETSC_TRUE; 3537e489de8fSHong Zhang bnew->free_ij = PETSC_TRUE; 3538feb78a15SHong Zhang 3539a5348796SHong Zhang /* condense columns of maij->B */ 35409566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 35419566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 35429566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 35439566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 35449566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3546feb78a15SHong Zhang } 3547feb78a15SHong Zhang 3548ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35494aa3045dSJed Brown 3550d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3551d71ae5a4SJacob Faibussowitsch { 355298b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 355385f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 355498b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35551fd43edeSHong Zhang Mat M, Msub, B = a->B; 355698b658c4SHong Zhang MatScalar *aa; 355700e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3558a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 355998b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 356098b658c4SHong Zhang IS iscol_sub, iscmap; 356198b658c4SHong Zhang const PetscInt *is_idx, *cmap; 356218e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3563a31a438cSHong Zhang MPI_Comm comm; 35647e2c5f70SBarry Smith 3565a0ff6018SBarry Smith PetscFunctionBegin; 35669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3567d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35689566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 356928b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35709566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3571d5761cdaSHong Zhang 35729566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 357328b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3574d5761cdaSHong Zhang 35759566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 357628b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3577d5761cdaSHong Zhang 35789566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3579d5761cdaSHong Zhang 3580d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35813b00a383SHong Zhang PetscBool flg; 35823b00a383SHong Zhang 35839566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35849566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3585bcae8d28SHong Zhang 35863b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3587366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35889566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3589366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 35901c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3591366a327dSHong Zhang if (allcolumns) { 3592366a327dSHong Zhang iscol_sub = iscol_local; 35939566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35949566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3595366a327dSHong Zhang 35963b00a383SHong Zhang } else { 35971358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3598244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 36009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 36019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 36028d2139bdSHong Zhang count = 0; 3603a31a438cSHong Zhang k = 0; 3604a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3605a31a438cSHong Zhang j = is_idx[i]; 3606a31a438cSHong Zhang if (j >= cstart && j < cend) { 3607a31a438cSHong Zhang /* diagonal part of mat */ 36088d2139bdSHong Zhang idx[count] = j; 3609366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36104a3daf6eSHong Zhang } else if (Bn) { 3611a31a438cSHong Zhang /* off-diagonal part of mat */ 3612a31a438cSHong Zhang if (j == garray[k]) { 36138d2139bdSHong Zhang idx[count] = j; 3614a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3615a31a438cSHong Zhang } else if (j > garray[k]) { 3616a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3617a31a438cSHong Zhang if (j == garray[k]) { 3618a31a438cSHong Zhang idx[count] = j; 3619a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36208d2139bdSHong Zhang } 36218d2139bdSHong Zhang } 36228d2139bdSHong Zhang } 36238d2139bdSHong Zhang } 36249566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36258d2139bdSHong Zhang 36269566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36279566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36289566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3629b6d9b4e0SHong Zhang 36309566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3631a31a438cSHong Zhang } 36328b3fa1f7SHong Zhang 36333b00a383SHong Zhang /* (3) Create sequential Msub */ 36349566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3635d5761cdaSHong Zhang } 36368d2139bdSHong Zhang 36379566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 363898b658c4SHong Zhang aij = (Mat_SeqAIJ *)(Msub)->data; 363998b658c4SHong Zhang ii = aij->i; 36409566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3641a0ff6018SBarry Smith 3642a0ff6018SBarry Smith /* 3643a0ff6018SBarry Smith m - number of local rows 3644a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3645a0ff6018SBarry Smith rstart - first row in new global matrix generated 3646a0ff6018SBarry Smith */ 36479566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 364898b658c4SHong Zhang 36493b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36503b00a383SHong Zhang /* (4) Create parallel newmat */ 365198b658c4SHong Zhang PetscMPIInt rank, size; 3652bcae8d28SHong Zhang PetscInt csize; 365398b658c4SHong Zhang 36549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 365600e6dbe6SBarry Smith 3657a0ff6018SBarry Smith /* 365800e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 365900e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3660a0ff6018SBarry Smith */ 366100e6dbe6SBarry Smith 366200e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36639566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36646a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36659566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3666a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3667e2c4fddaSBarry Smith nlocal = m; 36686a6a5d1dSBarry Smith } else { 3669a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3670ab50ec6bSBarry Smith } 3671ab50ec6bSBarry Smith } else { 36726a6a5d1dSBarry Smith nlocal = csize; 36736a6a5d1dSBarry Smith } 36749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 367500e6dbe6SBarry Smith rstart = rend - nlocal; 3676aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 367700e6dbe6SBarry Smith 367800e6dbe6SBarry Smith /* next, compute all the lengths */ 367998b658c4SHong Zhang jj = aij->j; 36809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 368100e6dbe6SBarry Smith olens = dlens + m; 368200e6dbe6SBarry Smith for (i = 0; i < m; i++) { 368300e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 368400e6dbe6SBarry Smith olen = 0; 368500e6dbe6SBarry Smith dlen = 0; 368600e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 368715b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 368800e6dbe6SBarry Smith else dlen++; 368900e6dbe6SBarry Smith jj++; 369000e6dbe6SBarry Smith } 369100e6dbe6SBarry Smith olens[i] = olen; 369200e6dbe6SBarry Smith dlens[i] = dlen; 369300e6dbe6SBarry Smith } 3694b6d9b4e0SHong Zhang 36959566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36969566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 369798b658c4SHong Zhang 36989566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36999566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 37009566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 37019566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 37029566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 37039566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3704d5761cdaSHong Zhang 3705d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3706a0ff6018SBarry Smith M = *newmat; 37079566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 370808401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37099566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3710c48de900SBarry Smith /* 3711c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3712c48de900SBarry Smith rather than the slower MatSetValues(). 3713c48de900SBarry Smith */ 3714c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3715c48de900SBarry Smith M->assembled = PETSC_FALSE; 3716a0ff6018SBarry Smith } 3717548ecf4dSHong Zhang 37183b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37209566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 372198b658c4SHong Zhang 372298b658c4SHong Zhang jj = aij->j; 37239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3724a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3725a0ff6018SBarry Smith row = rstart + i; 372600e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 372715b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37289566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37299371c9d4SSatish Balay jj += nz; 37309371c9d4SSatish Balay aa += nz; 3731a0ff6018SBarry Smith } 37329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3734a0ff6018SBarry Smith 37359566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37369566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3737fee21e36SBarry Smith 37389566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 373998b658c4SHong Zhang 374098b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3741fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37423b00a383SHong Zhang *newmat = M; 37439566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubMatrix", (PetscObject)Msub)); 37449566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 374598b658c4SHong Zhang 37469566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubIScol", (PetscObject)iscol_sub)); 37479566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 374898b658c4SHong Zhang 37499566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "Subcmap", (PetscObject)iscmap)); 37509566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3751bcae8d28SHong Zhang 3752bcae8d28SHong Zhang if (iscol_local) { 37539566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "ISAllGather", (PetscObject)iscol_local)); 37549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3755bcae8d28SHong Zhang } 375698b658c4SHong Zhang } 37573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3758a0ff6018SBarry Smith } 3759273d9f13SBarry Smith 3760df40acb1SHong Zhang /* 3761df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3762df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3763df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3764df40acb1SHong Zhang 376511a5261eSBarry Smith This requires a sequential iscol with all indices. 3766df40acb1SHong Zhang */ 3767d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3768d71ae5a4SJacob Faibussowitsch { 3769df40acb1SHong Zhang PetscMPIInt rank, size; 3770df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3771df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3772df40acb1SHong Zhang Mat M, Mreuse; 377398b658c4SHong Zhang MatScalar *aa, *vwork; 3774df40acb1SHong Zhang MPI_Comm comm; 3775df40acb1SHong Zhang Mat_SeqAIJ *aij; 37760b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3777df40acb1SHong Zhang 3778df40acb1SHong Zhang PetscFunctionBegin; 37799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3782df40acb1SHong Zhang 37830b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37849566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37859566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37860b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 37871c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37880b27a90eSHong Zhang 3789df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37909566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 379128b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37929566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3793df40acb1SHong Zhang } else { 37949566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3795df40acb1SHong Zhang } 3796df40acb1SHong Zhang 3797df40acb1SHong Zhang /* 3798df40acb1SHong Zhang m - number of local rows 3799df40acb1SHong Zhang n - number of columns (same on all processors) 3800df40acb1SHong Zhang rstart - first row in new global matrix generated 3801df40acb1SHong Zhang */ 38029566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 38039566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3804df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 3805df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3806df40acb1SHong Zhang ii = aij->i; 3807df40acb1SHong Zhang jj = aij->j; 3808df40acb1SHong Zhang 3809df40acb1SHong Zhang /* 3810df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3811df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3812df40acb1SHong Zhang */ 3813df40acb1SHong Zhang 3814df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3815df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38169566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3817df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3818df40acb1SHong Zhang nlocal = m; 3819df40acb1SHong Zhang } else { 3820df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3821df40acb1SHong Zhang } 3822df40acb1SHong Zhang } else { 3823df40acb1SHong Zhang nlocal = csize; 3824df40acb1SHong Zhang } 38259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3826df40acb1SHong Zhang rstart = rend - nlocal; 3827aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3828df40acb1SHong Zhang 3829df40acb1SHong Zhang /* next, compute all the lengths */ 38309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3831df40acb1SHong Zhang olens = dlens + m; 3832df40acb1SHong Zhang for (i = 0; i < m; i++) { 3833df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3834df40acb1SHong Zhang olen = 0; 3835df40acb1SHong Zhang dlen = 0; 3836df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3837df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3838df40acb1SHong Zhang else dlen++; 3839df40acb1SHong Zhang jj++; 3840df40acb1SHong Zhang } 3841df40acb1SHong Zhang olens[i] = olen; 3842df40acb1SHong Zhang dlens[i] = dlen; 3843df40acb1SHong Zhang } 38449566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38469566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38479566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38489566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38499566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3850df40acb1SHong Zhang } else { 3851df40acb1SHong Zhang PetscInt ml, nl; 3852df40acb1SHong Zhang 3853df40acb1SHong Zhang M = *newmat; 38549566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 385508401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38569566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3857df40acb1SHong Zhang /* 3858df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3859df40acb1SHong Zhang rather than the slower MatSetValues(). 3860df40acb1SHong Zhang */ 3861df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3862df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3863df40acb1SHong Zhang } 38649566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 3865df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3866df40acb1SHong Zhang ii = aij->i; 3867df40acb1SHong Zhang jj = aij->j; 38682e5835c6SStefano Zampini 38692e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38709566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3871df40acb1SHong Zhang for (i = 0; i < m; i++) { 3872df40acb1SHong Zhang row = rstart + i; 3873df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38749371c9d4SSatish Balay cwork = jj; 38758e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38769371c9d4SSatish Balay vwork = aa; 38778e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38789566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3879df40acb1SHong Zhang } 38809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3881df40acb1SHong Zhang 38829566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38839566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3884df40acb1SHong Zhang *newmat = M; 3885df40acb1SHong Zhang 3886df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3887df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38889566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38899566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3890df40acb1SHong Zhang } 38913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3892df40acb1SHong Zhang } 3893df40acb1SHong Zhang 3894ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3895d71ae5a4SJacob Faibussowitsch { 38966a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 3897899cda47SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii; 3898ccd8e176SBarry Smith const PetscInt *JJ; 3899eeb24464SBarry Smith PetscBool nooffprocentries; 39006a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3901ccd8e176SBarry Smith 3902ccd8e176SBarry Smith PetscFunctionBegin; 3903aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]); 3904899cda47SBarry Smith 39059566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 39069566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3907d0f46423SBarry Smith m = B->rmap->n; 3908d0f46423SBarry Smith cstart = B->cmap->rstart; 3909d0f46423SBarry Smith cend = B->cmap->rend; 3910d0f46423SBarry Smith rstart = B->rmap->rstart; 3911899cda47SBarry Smith 39129566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3913ccd8e176SBarry Smith 391476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39158f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3916ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39178e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 391808401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 391908401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 392008401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3921ecc77c7aSBarry Smith } 392276bd3646SJed Brown } 3923ecc77c7aSBarry Smith 39248f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3925b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39268e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 3927ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3928ccd8e176SBarry Smith d = 0; 39290daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39300daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3931ccd8e176SBarry Smith } 3932ccd8e176SBarry Smith d_nnz[i] = d; 3933ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3934ccd8e176SBarry Smith } 39359566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39369566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3937ccd8e176SBarry Smith 39388f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3939ccd8e176SBarry Smith ii = i + rstart; 39408e3a54c0SPierre Jolivet PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES)); 3941ccd8e176SBarry Smith } 3942eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3943eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39449566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39459566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3946eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3947ccd8e176SBarry Smith 39486a3d2595SBarry Smith /* count number of entries below block diagonal */ 39496a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39506a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39516a3d2595SBarry Smith Aij->ld = ld; 39526a3d2595SBarry Smith for (i = 0; i < m; i++) { 39536a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39546a3d2595SBarry Smith j = 0; 3955ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39566a3d2595SBarry Smith ld[i] = j; 3957720a2405SPierre Jolivet if (J) J += nnz; 39586a3d2595SBarry Smith } 39596a3d2595SBarry Smith 39609566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3962ccd8e176SBarry Smith } 3963ccd8e176SBarry Smith 39641eea217eSSatish Balay /*@ 396511a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3966ccd8e176SBarry Smith (the default parallel PETSc format). 3967ccd8e176SBarry Smith 3968d083f849SBarry Smith Collective 3969ccd8e176SBarry Smith 3970ccd8e176SBarry Smith Input Parameters: 3971a1661176SMatthew Knepley + B - the matrix 3972*d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3973*d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3974ccd8e176SBarry Smith - v - optional values in the matrix 3975ccd8e176SBarry Smith 3976ccd8e176SBarry Smith Level: developer 3977ccd8e176SBarry Smith 397812251496SSatish Balay Notes: 39792ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39802ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 398111a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 398212251496SSatish Balay 39832ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 398412251496SSatish Balay 3985a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3986a4bd8bc0SBarry Smith 3987a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3988a4bd8bc0SBarry Smith 3989a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3990a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3991a4bd8bc0SBarry Smith 399212251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 399312251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3994c5e4d11fSDmitry Karpeev as shown 399527430b45SBarry Smith .vb 399627430b45SBarry Smith 1 0 0 399727430b45SBarry Smith 2 0 3 P0 399827430b45SBarry Smith ------- 399927430b45SBarry Smith 4 5 6 P1 400027430b45SBarry Smith 400127430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 400227430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 400327430b45SBarry Smith j = {0,0,2} [size = 3] 400427430b45SBarry Smith v = {1,2,3} [size = 3] 400527430b45SBarry Smith 400627430b45SBarry Smith Process1 [P1] rows_owned=[2] 400727430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 400827430b45SBarry Smith j = {0,1,2} [size = 3] 400927430b45SBarry Smith v = {4,5,6} [size = 3] 401027430b45SBarry Smith .ve 401112251496SSatish Balay 4012fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4013a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4014ccd8e176SBarry Smith @*/ 4015d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4016d71ae5a4SJacob Faibussowitsch { 4017ccd8e176SBarry Smith PetscFunctionBegin; 4018cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4020ccd8e176SBarry Smith } 4021ccd8e176SBarry Smith 4022273d9f13SBarry Smith /*@C 402311a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4024273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4025273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 402620f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4027273d9f13SBarry Smith 4028d083f849SBarry Smith Collective 4029273d9f13SBarry Smith 4030273d9f13SBarry Smith Input Parameters: 40311c4f3114SJed Brown + B - the matrix 4032273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4033273d9f13SBarry Smith (same value is used for all local rows) 4034273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4035273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40362ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4037273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40383287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40393287b5eaSJed Brown the diagonal entry even if it is zero. 4040273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4041273d9f13SBarry Smith submatrix (same value is used for all local rows). 4042273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4043273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40442ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4045273d9f13SBarry Smith structure. The size of this array is equal to the number 4046273d9f13SBarry Smith of local rows, i.e 'm'. 4047273d9f13SBarry Smith 40482920cce0SJacob Faibussowitsch Example Usage: 404927430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 405027430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 405127430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 405227430b45SBarry Smith as follows 405327430b45SBarry Smith 405427430b45SBarry Smith .vb 405527430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 405627430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 405727430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 405827430b45SBarry Smith ------------------------------------- 405927430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 406027430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 406127430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 406227430b45SBarry Smith ------------------------------------- 406327430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 406427430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 406527430b45SBarry Smith .ve 406627430b45SBarry Smith 406727430b45SBarry Smith This can be represented as a collection of submatrices as 406827430b45SBarry Smith .vb 406927430b45SBarry Smith A B C 407027430b45SBarry Smith D E F 407127430b45SBarry Smith G H I 407227430b45SBarry Smith .ve 407327430b45SBarry Smith 407427430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 407527430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 407627430b45SBarry Smith 407727430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407827430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407927430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 408027430b45SBarry Smith 408127430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 408227430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 408327430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 408427430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 408527430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 408627430b45SBarry Smith matrix, ans [DF] as another `MATSEQAIJ` matrix. 408727430b45SBarry Smith 408820f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 408920f4b53cSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 409027430b45SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 409120f4b53cSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 409227430b45SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 409320f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 409427430b45SBarry Smith .vb 409527430b45SBarry Smith proc0 dnz = 2, o_nz = 2 409627430b45SBarry Smith proc1 dnz = 3, o_nz = 2 409727430b45SBarry Smith proc2 dnz = 1, o_nz = 4 409827430b45SBarry Smith .ve 409920f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 410027430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 410127430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 410227430b45SBarry Smith 34 values. 410327430b45SBarry Smith 410420f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 410527430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 410620f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 410727430b45SBarry Smith .vb 410827430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 410927430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 411027430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 411127430b45SBarry Smith .ve 411227430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 411327430b45SBarry Smith hence pre-allocation is perfect. 411427430b45SBarry Smith 411527430b45SBarry Smith Level: intermediate 411627430b45SBarry Smith 411727430b45SBarry Smith Notes: 411849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 411949a6f317SBarry Smith 412027430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41210598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4122651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4123273d9f13SBarry Smith 4124273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4125273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4126273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4127273d9f13SBarry Smith 4128273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4129a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4130a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4131a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4132a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4133a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4134a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4135a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4136a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4137273d9f13SBarry Smith 41382ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4139273d9f13SBarry Smith 414027430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4141aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 414227430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4143aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4144aa95bbe8SBarry Smith 41451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4146a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4147273d9f13SBarry Smith @*/ 4148d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4149d71ae5a4SJacob Faibussowitsch { 4150273d9f13SBarry Smith PetscFunctionBegin; 41516ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41526ba663aaSJed Brown PetscValidType(B, 1); 4153cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4155273d9f13SBarry Smith } 4156273d9f13SBarry Smith 415758d36128SBarry Smith /*@ 415811a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41598f8f2f0dSBarry Smith CSR format for the local rows. 41602fb0ec9aSBarry Smith 4161d083f849SBarry Smith Collective 41622fb0ec9aSBarry Smith 41632fb0ec9aSBarry Smith Input Parameters: 41642fb0ec9aSBarry Smith + comm - MPI communicator 416511a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41662fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4167*d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4168*d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4169*d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4170*d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41715693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41725693b835SJunchao Zhang . j - global column indices 4173f1f2ae84SBarry Smith - a - optional matrix values 41742fb0ec9aSBarry Smith 41752fb0ec9aSBarry Smith Output Parameter: 41762fb0ec9aSBarry Smith . mat - the matrix 417703bfb495SBarry Smith 41782fb0ec9aSBarry Smith Level: intermediate 41792fb0ec9aSBarry Smith 41802fb0ec9aSBarry Smith Notes: 41812ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 41822fb0ec9aSBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 41835693b835SJunchao Zhang called this routine. Use `MatCreateMPIAIJWithSplitArray()` to avoid needing to copy the arrays. 41842fb0ec9aSBarry Smith 41852ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 418612251496SSatish Balay 41875693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4188a4bd8bc0SBarry Smith 41895693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4190a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4191a4bd8bc0SBarry Smith 419212251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 419312251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 4194c5e4d11fSDmitry Karpeev as shown 41952ef1f0ffSBarry Smith .vb 41962ef1f0ffSBarry Smith 1 0 0 41972ef1f0ffSBarry Smith 2 0 3 P0 41982ef1f0ffSBarry Smith ------- 41992ef1f0ffSBarry Smith 4 5 6 P1 42008f8f2f0dSBarry Smith 42012ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 42022ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 42032ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 42042ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 42052fb0ec9aSBarry Smith 42062ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 42072ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 42082ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 42092ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42102ef1f0ffSBarry Smith .ve 42112ef1f0ffSBarry Smith 42121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIK`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42135693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42142fb0ec9aSBarry Smith @*/ 4215d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4216d71ae5a4SJacob Faibussowitsch { 42172fb0ec9aSBarry Smith PetscFunctionBegin; 421808401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 421908401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42209566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42219566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42229566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42239566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42249566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42262fb0ec9aSBarry Smith } 42272fb0ec9aSBarry Smith 42288f8f2f0dSBarry Smith /*@ 422911a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42302ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42312ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42326a3d2595SBarry Smith 42336a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42348f8f2f0dSBarry Smith 42358f8f2f0dSBarry Smith Collective 42368f8f2f0dSBarry Smith 42378f8f2f0dSBarry Smith Input Parameters: 42388f8f2f0dSBarry Smith + mat - the matrix 423911a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42408f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 424111a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42428f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 424311a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 424411a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42458f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42468f8f2f0dSBarry Smith . J - column indices 42478f8f2f0dSBarry Smith - v - matrix values 42488f8f2f0dSBarry Smith 42492ef1f0ffSBarry Smith Level: deprecated 42508f8f2f0dSBarry Smith 42511cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4252a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42538f8f2f0dSBarry Smith @*/ 4254d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4255d71ae5a4SJacob Faibussowitsch { 42566a3d2595SBarry Smith PetscInt nnz, i; 42578f8f2f0dSBarry Smith PetscBool nooffprocentries; 42588f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4259fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4260fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42618f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42626a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42636a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42648f8f2f0dSBarry Smith 42658f8f2f0dSBarry Smith PetscFunctionBegin; 4266aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 426708401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 426808401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 426908401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42708f8f2f0dSBarry Smith 42719566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42738f8f2f0dSBarry Smith 42748f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42754c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42764c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42774c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42784c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42794c17f1ccSBarry Smith } 42804c17f1ccSBarry Smith } 42818f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42828f8f2f0dSBarry Smith Iii = Ii[i]; 42838f8f2f0dSBarry Smith ldi = ld[i]; 42848f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42859566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42869566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42879566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42888f8f2f0dSBarry Smith ad += md; 42898f8f2f0dSBarry Smith ao += nnz - md; 42908f8f2f0dSBarry Smith } 42918f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42928f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42959566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42969566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42979566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42989566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42999566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43008f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 43013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43028f8f2f0dSBarry Smith } 43038f8f2f0dSBarry Smith 43046a3d2595SBarry Smith /*@ 430511a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 43066a3d2595SBarry Smith 43076a3d2595SBarry Smith Collective 43086a3d2595SBarry Smith 43096a3d2595SBarry Smith Input Parameters: 43106a3d2595SBarry Smith + mat - the matrix 43116a3d2595SBarry Smith - v - matrix values, stored by row 43126a3d2595SBarry Smith 43136a3d2595SBarry Smith Level: intermediate 43146a3d2595SBarry Smith 4315a4bd8bc0SBarry Smith Notes: 43166a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43176a3d2595SBarry Smith 4318a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4319a4bd8bc0SBarry Smith 43201cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4321a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43226a3d2595SBarry Smith @*/ 4323d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4324d71ae5a4SJacob Faibussowitsch { 43256a3d2595SBarry Smith PetscInt nnz, i, m; 43266a3d2595SBarry Smith PetscBool nooffprocentries; 43276a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43286a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43296a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43306a3d2595SBarry Smith PetscScalar *ad, *ao; 43316a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43326a3d2595SBarry Smith PetscInt ldi, Iii, md; 43336a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43346a3d2595SBarry Smith 43356a3d2595SBarry Smith PetscFunctionBegin; 43366a3d2595SBarry Smith m = mat->rmap->n; 43376a3d2595SBarry Smith 43386a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43396a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43406a3d2595SBarry Smith Iii = 0; 43416a3d2595SBarry Smith for (i = 0; i < m; i++) { 43426a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43436a3d2595SBarry Smith ldi = ld[i]; 43446a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43456a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43466a3d2595SBarry Smith ad += md; 4347810441c8SPierre Jolivet if (ao) { 4348810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4349810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43506a3d2595SBarry Smith ao += nnz - md; 4351810441c8SPierre Jolivet } 43526a3d2595SBarry Smith Iii += nnz; 43536a3d2595SBarry Smith } 43546a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43556a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43566a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43576a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43586a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43596a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43606a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43616a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43626a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43636a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43656a3d2595SBarry Smith } 43666a3d2595SBarry Smith 4367273d9f13SBarry Smith /*@C 436811a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4369273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4370273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43712ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4372273d9f13SBarry Smith 4373d083f849SBarry Smith Collective 4374273d9f13SBarry Smith 4375273d9f13SBarry Smith Input Parameters: 4376273d9f13SBarry Smith + comm - MPI communicator 437711a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4378273d9f13SBarry Smith This value should be the same as the local size used in creating the 4379273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4380273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 438145f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4382273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 438311a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 438411a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4385273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4386273d9f13SBarry Smith (same value is used for all local rows) 4387273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4388273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43892ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4390273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4391273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4392273d9f13SBarry Smith submatrix (same value is used for all local rows). 4393273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4394273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43952ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4396273d9f13SBarry Smith structure. The size of this array is equal to the number 4397273d9f13SBarry Smith of local rows, i.e 'm'. 4398273d9f13SBarry Smith 4399273d9f13SBarry Smith Output Parameter: 4400273d9f13SBarry Smith . A - the matrix 4401273d9f13SBarry Smith 440227430b45SBarry Smith Options Database Keys: 440327430b45SBarry Smith + -mat_no_inode - Do not use inodes 440427430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 440527430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 440627430b45SBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the vecscatter be viewed as a matrix. 440727430b45SBarry Smith Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 440827430b45SBarry Smith 44092ef1f0ffSBarry Smith Level: intermediate 44102ef1f0ffSBarry Smith 441127430b45SBarry Smith Notes: 441277433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4413f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 441411a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4415175b88e8SBarry Smith 441649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 441749a6f317SBarry Smith 44182ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44192ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4420273d9f13SBarry Smith storage requirements for this matrix. 4421273d9f13SBarry Smith 442211a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4423273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4424273d9f13SBarry Smith that argument. 4425273d9f13SBarry Smith 4426273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4427273d9f13SBarry Smith (possibly both). 4428273d9f13SBarry Smith 442933a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 443033a7c187SSatish Balay first m0 rows belong to process 0, the next m1 rows belong to 443133a7c187SSatish Balay process 1, the next m2 rows belong to process 2 etc.. where 443233a7c187SSatish Balay m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores 443333a7c187SSatish Balay values corresponding to [m x N] submatrix. 4434273d9f13SBarry Smith 443533a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 443633a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4437df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 443833a7c187SSatish Balay 443933a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 444033a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 444133a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 444233a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 444333a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 444433a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 444533a7c187SSatish Balay illustrates this concept. 444633a7c187SSatish Balay 444733a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 444833a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 444933a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 445033a7c187SSatish Balay local matrix (a rectangular submatrix). 4451273d9f13SBarry Smith 44522ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4453273d9f13SBarry Smith 445497d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44552ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4456da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4457da57b5cdSKarl Rupp .vb 44582ef1f0ffSBarry Smith MatCreate(..., &A); 44592ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44602ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44612ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4462da57b5cdSKarl Rupp .ve 446397d05335SKris Buschelman 4464273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4465273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4466273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4467273d9f13SBarry Smith 44682920cce0SJacob Faibussowitsch Example Usage: 4469273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4470273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4471273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4472efc377ccSKarl Rupp as follows 4473273d9f13SBarry Smith 4474273d9f13SBarry Smith .vb 4475273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4476273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4477273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4478273d9f13SBarry Smith ------------------------------------- 4479273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4480273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4481273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4482273d9f13SBarry Smith ------------------------------------- 4483273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4484273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4485273d9f13SBarry Smith .ve 4486273d9f13SBarry Smith 4487da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4488273d9f13SBarry Smith 4489273d9f13SBarry Smith .vb 4490273d9f13SBarry Smith A B C 4491273d9f13SBarry Smith D E F 4492273d9f13SBarry Smith G H I 4493273d9f13SBarry Smith .ve 4494273d9f13SBarry Smith 4495273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4496273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4497273d9f13SBarry Smith 4498273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4499273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4500273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4501273d9f13SBarry Smith 4502273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4503273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4504273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4505273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 450627430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 4507273d9f13SBarry Smith matrix, ans [DF] as another SeqAIJ matrix. 4508273d9f13SBarry Smith 45092ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45102ef1f0ffSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 4511273d9f13SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 45122ef1f0ffSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 4513273d9f13SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45142ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4515273d9f13SBarry Smith .vb 451627430b45SBarry Smith proc0 dnz = 2, o_nz = 2 451727430b45SBarry Smith proc1 dnz = 3, o_nz = 2 451827430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4519273d9f13SBarry Smith .ve 45202ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4521273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4522273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4523273d9f13SBarry Smith 34 values. 4524273d9f13SBarry Smith 45252ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4526a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4527da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4528273d9f13SBarry Smith .vb 452927430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 453027430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 453127430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4532273d9f13SBarry Smith .ve 4533273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4534273d9f13SBarry Smith hence pre-allocation is perfect. 4535273d9f13SBarry Smith 45361cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4537db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()` 4538273d9f13SBarry Smith @*/ 4539d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4540d71ae5a4SJacob Faibussowitsch { 4541b1d57f15SBarry Smith PetscMPIInt size; 4542273d9f13SBarry Smith 4543273d9f13SBarry Smith PetscFunctionBegin; 45449566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4547273d9f13SBarry Smith if (size > 1) { 45489566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45499566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4550273d9f13SBarry Smith } else { 45519566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4553273d9f13SBarry Smith } 45543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4555273d9f13SBarry Smith } 4556195d93cdSBarry Smith 45570b98dbb4SBarry Smith /*MC 45580b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix 45590b98dbb4SBarry Smith 45600b98dbb4SBarry Smith Synopsis: 45610b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45620b98dbb4SBarry Smith 45630b98dbb4SBarry Smith Not Collective 45640b98dbb4SBarry Smith 45650b98dbb4SBarry Smith Input Parameter: 45660b98dbb4SBarry Smith . A - the `MATMPIAIJ` matrix 45670b98dbb4SBarry Smith 45680b98dbb4SBarry Smith Output Parameters: 45690b98dbb4SBarry Smith + Ad - the diagonal portion of the matrix 45704cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45712ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45720b98dbb4SBarry Smith - ierr - error code 45730b98dbb4SBarry Smith 45740b98dbb4SBarry Smith Level: advanced 45750b98dbb4SBarry Smith 45760b98dbb4SBarry Smith Note: 45770b98dbb4SBarry Smith Use `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45780b98dbb4SBarry Smith 45791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()` 45800b98dbb4SBarry Smith M*/ 45810b98dbb4SBarry Smith 45820b98dbb4SBarry Smith /*MC 45830b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45840b98dbb4SBarry Smith 45850b98dbb4SBarry Smith Synopsis: 45860b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45870b98dbb4SBarry Smith 45880b98dbb4SBarry Smith Not Collective 45890b98dbb4SBarry Smith 45900b98dbb4SBarry Smith Input Parameters: 45910b98dbb4SBarry Smith + A - the `MATMPIAIJ` matrix 45920b98dbb4SBarry Smith . Ad - the diagonal portion of the matrix 45934cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45942ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45950b98dbb4SBarry Smith - ierr - error code 45960b98dbb4SBarry Smith 45970b98dbb4SBarry Smith Level: advanced 45980b98dbb4SBarry Smith 45991cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()` 46000b98dbb4SBarry Smith M*/ 46010b98dbb4SBarry Smith 4602127ca0efSMatthew Knepley /*@C 46030ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4604127ca0efSMatthew Knepley 46052ef1f0ffSBarry Smith Not Collective 4606127ca0efSMatthew Knepley 4607127ca0efSMatthew Knepley Input Parameter: 460811a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4609127ca0efSMatthew Knepley 4610127ca0efSMatthew Knepley Output Parameters: 461111a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 461211a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46132ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4614127ca0efSMatthew Knepley 46150ab4885dSBarry Smith Level: intermediate 46160ab4885dSBarry Smith 461711a5261eSBarry Smith Note: 46182ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46192ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46202ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4621127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4622127ca0efSMatthew Knepley 4623fe59aa6dSJacob Faibussowitsch Fortran Notes: 46240ab4885dSBarry Smith `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()` 4625127ca0efSMatthew Knepley 4626fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4627127ca0efSMatthew Knepley @*/ 4628d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4629d71ae5a4SJacob Faibussowitsch { 4630195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 463104cf37c7SBarry Smith PetscBool flg; 4632b1d57f15SBarry Smith 4633195d93cdSBarry Smith PetscFunctionBegin; 46349566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 463528b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 463621e72a00SBarry Smith if (Ad) *Ad = a->A; 463721e72a00SBarry Smith if (Ao) *Ao = a->B; 463821e72a00SBarry Smith if (colmap) *colmap = a->garray; 46393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4640195d93cdSBarry Smith } 4641a2243be0SBarry Smith 4642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4643d71ae5a4SJacob Faibussowitsch { 4644110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46459b8102ccSHong Zhang PetscInt *indx; 4646110bb6e1SHong Zhang PetscScalar *values; 4647421ddf4dSJunchao Zhang MatType rootType; 46489b8102ccSHong Zhang 46499b8102ccSHong Zhang PetscFunctionBegin; 46509566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4651110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4652110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4653110bb6e1SHong Zhang 465448a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4655a22543b6SHong Zhang /* Check sum(n) = N */ 46561c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 465708401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4658a22543b6SHong Zhang 46599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46609b8102ccSHong Zhang rstart -= m; 46619b8102ccSHong Zhang 4662d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46639b8102ccSHong Zhang for (i = 0; i < m; i++) { 46649566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46659566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46669566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46679b8102ccSHong Zhang } 46689b8102ccSHong Zhang 46699566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46709566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46719566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46729566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46739566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46749566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46769566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4677d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46789566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46799b8102ccSHong Zhang } 46809b8102ccSHong Zhang 4681110bb6e1SHong Zhang /* numeric phase */ 46829566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46839b8102ccSHong Zhang for (i = 0; i < m; i++) { 46849566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46859b8102ccSHong Zhang Ii = i + rstart; 46869566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46879566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46889b8102ccSHong Zhang } 46899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4692c5d6d63eSBarry Smith } 4693c5d6d63eSBarry Smith 4694d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data) 4695d71ae5a4SJacob Faibussowitsch { 46966718818eSStefano Zampini Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data; 469751a7d1a8SHong Zhang 469851a7d1a8SHong Zhang PetscFunctionBegin; 46993ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 47009566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 47019566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 47029566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 47039566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 47049566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 47059566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 47069566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 47079566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 47089566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47099566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47109566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47119566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47129566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47139566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471551a7d1a8SHong Zhang } 471651a7d1a8SHong Zhang 4717c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4718c6db04a5SJed Brown #include <petscbt.h> 47194ebed01fSBarry Smith 4720d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4721d71ae5a4SJacob Faibussowitsch { 4722ce94432eSBarry Smith MPI_Comm comm; 472355d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4724b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 4725a2ea699eSBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj; 4726b1d57f15SBarry Smith PetscInt proc, m; 4727b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 4728b1d57f15SBarry Smith PetscInt k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4729b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 473055d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 473155d1abb9SHong Zhang MPI_Status *status; 4732fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4733dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 473455d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4735776b82aeSLisandro Dalcin PetscContainer container; 473655d1abb9SHong Zhang 473755d1abb9SHong Zhang PetscFunctionBegin; 47389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47399566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47403c2c1871SHong Zhang 47419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 474355d1abb9SHong Zhang 47449566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 474528b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47469566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4748fff043a9SJunchao Zhang aa = a_a; 4749bf0cc555SLisandro Dalcin 475055d1abb9SHong Zhang bi = merge->bi; 475155d1abb9SHong Zhang bj = merge->bj; 475255d1abb9SHong Zhang buf_ri = merge->buf_ri; 475355d1abb9SHong Zhang buf_rj = merge->buf_rj; 475455d1abb9SHong Zhang 47559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47567a2fc3feSBarry Smith owners = merge->rowmap->range; 475755d1abb9SHong Zhang len_s = merge->len_s; 475855d1abb9SHong Zhang 475955d1abb9SHong Zhang /* send and recv matrix values */ 47609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47619566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 476255d1abb9SHong Zhang 47639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 476455d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 476555d1abb9SHong Zhang if (!len_s[proc]) continue; 476655d1abb9SHong Zhang i = owners[proc]; 47679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 476855d1abb9SHong Zhang k++; 476955d1abb9SHong Zhang } 477055d1abb9SHong Zhang 47719566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47729566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47739566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 477455d1abb9SHong Zhang 47759566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47769566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 477755d1abb9SHong Zhang 477855d1abb9SHong Zhang /* insert mat values of mpimat */ 47799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47809566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 478155d1abb9SHong Zhang 478255d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 478355d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 478455d1abb9SHong Zhang nrows = *(buf_ri_k[k]); 478555d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4786a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 478755d1abb9SHong Zhang } 478855d1abb9SHong Zhang 478955d1abb9SHong Zhang /* set values of ba */ 47907a2fc3feSBarry Smith m = merge->rowmap->n; 479155d1abb9SHong Zhang for (i = 0; i < m; i++) { 479255d1abb9SHong Zhang arow = owners[rank] + i; 479355d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 479455d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47959566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 479655d1abb9SHong Zhang 479755d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 479855d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 479955d1abb9SHong Zhang aj = a->j + ai[arow]; 4800fff043a9SJunchao Zhang aa = a_a + ai[arow]; 480155d1abb9SHong Zhang nextaj = 0; 480255d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 480355d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 480455d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 480555d1abb9SHong Zhang } 480655d1abb9SHong Zhang } 480755d1abb9SHong Zhang 480855d1abb9SHong Zhang /* add received vals into ba */ 480955d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 481055d1abb9SHong Zhang /* i-th row */ 481155d1abb9SHong Zhang if (i == *nextrow[k]) { 481255d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 481355d1abb9SHong Zhang aj = buf_rj[k] + *(nextai[k]); 481455d1abb9SHong Zhang aa = abuf_r[k] + *(nextai[k]); 481555d1abb9SHong Zhang nextaj = 0; 481655d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 481755d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 481855d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 481955d1abb9SHong Zhang } 482055d1abb9SHong Zhang } 48219371c9d4SSatish Balay nextrow[k]++; 48229371c9d4SSatish Balay nextai[k]++; 482355d1abb9SHong Zhang } 482455d1abb9SHong Zhang } 48259566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 482655d1abb9SHong Zhang } 48279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48289566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48299566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 483055d1abb9SHong Zhang 48319566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48329566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48339566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48349566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48359566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 483755d1abb9SHong Zhang } 483838f152feSBarry Smith 4839d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4840d71ae5a4SJacob Faibussowitsch { 484155a3bba9SHong Zhang Mat B_mpi; 4842c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4843b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4844b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4845d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 4846a2f3521dSMark F. Adams PetscInt len, proc, *dnz, *onz, bs, cbs; 4847c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4848b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 484955d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 485058cb9c82SHong Zhang MPI_Status *status; 48510298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4852be0fcf8dSHong Zhang PetscBT lnkbt; 485351a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4854776b82aeSLisandro Dalcin PetscContainer container; 485502c68681SHong Zhang 4856e5f2cdd8SHong Zhang PetscFunctionBegin; 48579566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48583c2c1871SHong Zhang 485938f152feSBarry Smith /* make sure it is a PETSc comm */ 48609566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 486355d1abb9SHong Zhang 48649566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4866e5f2cdd8SHong Zhang 48676abd8857SHong Zhang /* determine row ownership */ 48689566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48709566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48719566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48729566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 487555d1abb9SHong Zhang 48767a2fc3feSBarry Smith m = merge->rowmap->n; 48777a2fc3feSBarry Smith owners = merge->rowmap->range; 48786abd8857SHong Zhang 48796abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48803e06a4e6SHong Zhang len_s = merge->len_s; 488151a7d1a8SHong Zhang 48822257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4883c2234fe3SHong Zhang merge->nsend = 0; 4884409913e3SHong Zhang for (proc = 0; proc < size; proc++) { 48852257cef7SHong Zhang len_si[proc] = 0; 48863e06a4e6SHong Zhang if (proc == rank) { 48876abd8857SHong Zhang len_s[proc] = 0; 48883e06a4e6SHong Zhang } else { 488902c68681SHong Zhang len_si[proc] = owners[proc + 1] - owners[proc] + 1; 48903e06a4e6SHong Zhang len_s[proc] = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */ 48913e06a4e6SHong Zhang } 48923e06a4e6SHong Zhang if (len_s[proc]) { 4893c2234fe3SHong Zhang merge->nsend++; 48942257cef7SHong Zhang nrows = 0; 48952257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48962257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48972257cef7SHong Zhang } 48982257cef7SHong Zhang len_si[proc] = 2 * (nrows + 1); 48992257cef7SHong Zhang len += len_si[proc]; 4900409913e3SHong Zhang } 490158cb9c82SHong Zhang } 4902409913e3SHong Zhang 49032257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 49049566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 49059566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4906671beff6SHong Zhang 49073e06a4e6SHong Zhang /* post the Irecv of j-structure */ 49089566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49099566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 491002c68681SHong Zhang 49113e06a4e6SHong Zhang /* post the Isend of j-structure */ 49129566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49133e06a4e6SHong Zhang 49142257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 4915409913e3SHong Zhang if (!len_s[proc]) continue; 491602c68681SHong Zhang i = owners[proc]; 49179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 491851a7d1a8SHong Zhang k++; 491951a7d1a8SHong Zhang } 492051a7d1a8SHong Zhang 49213e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49229566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49239566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 492402c68681SHong Zhang 492502c68681SHong Zhang /* send and recv i-structure */ 49269566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49279566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 492802c68681SHong Zhang 49299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49303e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49312257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 493202c68681SHong Zhang if (!len_s[proc]) continue; 49333e06a4e6SHong Zhang /* form outgoing message for i-structure: 49343e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49353e06a4e6SHong Zhang [1:nrows]: row index (global) 49363e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49373e06a4e6SHong Zhang */ 49382257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49393e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49403e06a4e6SHong Zhang buf_si[0] = nrows; 49413e06a4e6SHong Zhang buf_si_i[0] = 0; 49423e06a4e6SHong Zhang nrows = 0; 49433e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49443e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49453e06a4e6SHong Zhang if (anzi) { 49463e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49473e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49483e06a4e6SHong Zhang nrows++; 49493e06a4e6SHong Zhang } 49503e06a4e6SHong Zhang } 49519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 495202c68681SHong Zhang k++; 49532257cef7SHong Zhang buf_si += len_si[proc]; 495402c68681SHong Zhang } 49552257cef7SHong Zhang 49569566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49579566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 495802c68681SHong Zhang 49599566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 496048a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49613e06a4e6SHong Zhang 49629566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49639566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49649566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49659566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49669566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49679566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49689566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 496958cb9c82SHong Zhang 4970bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 497158cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 497358cb9c82SHong Zhang bi[0] = 0; 497458cb9c82SHong Zhang 4975be0fcf8dSHong Zhang /* create and initialize a linked list */ 4976be0fcf8dSHong Zhang nlnk = N + 1; 49779566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 497858cb9c82SHong Zhang 4979bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4980bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49819566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49822205254eSKarl Rupp 498358cb9c82SHong Zhang current_space = free_space; 498458cb9c82SHong Zhang 4985bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49869566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49871d79065fSBarry Smith 49883e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49892257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49903e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49913e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4992a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49933e06a4e6SHong Zhang } 49942257cef7SHong Zhang 4995d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4996bcc1bcd5SHong Zhang len = 0; 499758cb9c82SHong Zhang for (i = 0; i < m; i++) { 499858cb9c82SHong Zhang bnzi = 0; 499958cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 500058cb9c82SHong Zhang arow = owners[rank] + i; 500158cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 500258cb9c82SHong Zhang aj = a->j + ai[arow]; 50039566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 500458cb9c82SHong Zhang bnzi += nlnk; 500558cb9c82SHong Zhang /* add received col data into lnk */ 500651a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 500755d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 50083e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50093e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50109566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50113e06a4e6SHong Zhang bnzi += nlnk; 50129371c9d4SSatish Balay nextrow[k]++; 50139371c9d4SSatish Balay nextai[k]++; 50143e06a4e6SHong Zhang } 501558cb9c82SHong Zhang } 5016bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 501758cb9c82SHong Zhang 501858cb9c82SHong Zhang /* if free space is not available, make more free space */ 501948a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 502058cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50219566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50229566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5023bcc1bcd5SHong Zhang 502458cb9c82SHong Zhang current_space->array += bnzi; 502558cb9c82SHong Zhang current_space->local_used += bnzi; 502658cb9c82SHong Zhang current_space->local_remaining -= bnzi; 502758cb9c82SHong Zhang 502858cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 502958cb9c82SHong Zhang } 5030bcc1bcd5SHong Zhang 50319566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5032bcc1bcd5SHong Zhang 50339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50349566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50359566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5036409913e3SHong Zhang 5037bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50389566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50399566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 504054b84b50SHong Zhang if (n == PETSC_DECIDE) { 50419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 504254b84b50SHong Zhang } else { 50439566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 504454b84b50SHong Zhang } 50459566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50469566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50479566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5048d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50499566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 505058cb9c82SHong Zhang 505190431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50526abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5053affca5deSHong Zhang merge->bi = bi; 5054affca5deSHong Zhang merge->bj = bj; 505502c68681SHong Zhang merge->buf_ri = buf_ri; 505602c68681SHong Zhang merge->buf_rj = buf_rj; 50570298fd71SBarry Smith merge->coi = NULL; 50580298fd71SBarry Smith merge->coj = NULL; 50590298fd71SBarry Smith merge->owners_co = NULL; 5060affca5deSHong Zhang 50619566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5062bf0cc555SLisandro Dalcin 5063affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50649566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50659566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 50669566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50679566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50689566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5069affca5deSHong Zhang *mpimat = B_mpi; 507038f152feSBarry Smith 50719566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5073e5f2cdd8SHong Zhang } 507425616d81SHong Zhang 5075d4036a1aSHong Zhang /*@C 507611a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5077d4036a1aSHong Zhang matrices from each processor 5078d4036a1aSHong Zhang 5079d083f849SBarry Smith Collective 5080d4036a1aSHong Zhang 5081d4036a1aSHong Zhang Input Parameters: 5082d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5083d4036a1aSHong Zhang . seqmat - the input sequential matrices 508411a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 508511a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 508611a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5087d4036a1aSHong Zhang 5088d4036a1aSHong Zhang Output Parameter: 5089d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5090d4036a1aSHong Zhang 5091d4036a1aSHong Zhang Level: advanced 5092d4036a1aSHong Zhang 509311a5261eSBarry Smith Note: 5094d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5095d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 509611a5261eSBarry Smith destroyed when mpimat is destroyed. Call `PetscObjectQuery()` to access seqmat. 50972ef1f0ffSBarry Smith 50981cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5099d4036a1aSHong Zhang @*/ 5100d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5101d71ae5a4SJacob Faibussowitsch { 51027e63b356SHong Zhang PetscMPIInt size; 510355d1abb9SHong Zhang 510455d1abb9SHong Zhang PetscFunctionBegin; 51059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 51067e63b356SHong Zhang if (size == 1) { 51079566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 51087e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51099566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51107e63b356SHong Zhang } else { 51119566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51127e63b356SHong Zhang } 51139566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51157e63b356SHong Zhang } 51169566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 511748a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51189566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51199566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 512155d1abb9SHong Zhang } 51224ebed01fSBarry Smith 5123bc08b0f1SBarry Smith /*@ 51242920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51258a9c020eSBarry Smith 51268a9c020eSBarry Smith Not Collective 51278a9c020eSBarry Smith 51282fe279fdSBarry Smith Input Parameter: 512920f4b53cSBarry Smith . A - the matrix 51308a9c020eSBarry Smith 51318a9c020eSBarry Smith Output Parameter: 51328a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51338a9c020eSBarry Smith 51348a9c020eSBarry Smith Level: developer 51358a9c020eSBarry Smith 51368a9c020eSBarry Smith Notes: 51372920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51382920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51392920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51402920cce0SJacob Faibussowitsch 514111a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51428a9c020eSBarry Smith 51432920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51442920cce0SJacob Faibussowitsch 514511a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51468a9c020eSBarry Smith 51471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51488a9c020eSBarry Smith @*/ 5149d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5150d71ae5a4SJacob Faibussowitsch { 51518a9c020eSBarry Smith PetscBool mpi; 51528a9c020eSBarry Smith 51538a9c020eSBarry Smith PetscFunctionBegin; 51548a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51558a9c020eSBarry Smith if (mpi) { 51568a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51578a9c020eSBarry Smith } else { 51588a9c020eSBarry Smith *A_loc = A; 51598a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51608a9c020eSBarry Smith } 51613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51628a9c020eSBarry Smith } 51638a9c020eSBarry Smith 51648a9c020eSBarry Smith /*@ 51652920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 516625616d81SHong Zhang 516732fba14fSHong Zhang Not Collective 516825616d81SHong Zhang 516925616d81SHong Zhang Input Parameters: 517025616d81SHong Zhang + A - the matrix 517111a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 517225616d81SHong Zhang 517325616d81SHong Zhang Output Parameter: 517425616d81SHong Zhang . A_loc - the local sequential matrix generated 517525616d81SHong Zhang 517625616d81SHong Zhang Level: developer 517725616d81SHong Zhang 517877c65a98SStefano Zampini Notes: 51792920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51802920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51812920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51822920cce0SJacob Faibussowitsch 518311a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51848a9c020eSBarry Smith 51852920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51862920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51872920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51882920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 518977c65a98SStefano Zampini 51901cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 519125616d81SHong Zhang @*/ 5192d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5193d71ae5a4SJacob Faibussowitsch { 519401b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5195b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5196b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5197ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5198ce496241SStefano Zampini PetscScalar *ca, *cam; 519977c65a98SStefano Zampini PetscMPIInt size; 5200d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 52015a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 52028661ff28SBarry Smith PetscBool match; 520325616d81SHong Zhang 520425616d81SHong Zhang PetscFunctionBegin; 52059566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 520628b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 52079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 520877c65a98SStefano Zampini if (size == 1) { 520977c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52109566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 521177c65a98SStefano Zampini *A_loc = mpimat->A; 521277c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52139566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 521477c65a98SStefano Zampini } 52153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 521677c65a98SStefano Zampini } 521770a9ba44SHong Zhang 52189566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5219b78526a6SJose E. Roman a = (Mat_SeqAIJ *)(mpimat->A)->data; 5220b78526a6SJose E. Roman b = (Mat_SeqAIJ *)(mpimat->B)->data; 52219371c9d4SSatish Balay ai = a->i; 52229371c9d4SSatish Balay aj = a->j; 52239371c9d4SSatish Balay bi = b->i; 52249371c9d4SSatish Balay bj = b->j; 52259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5227ce496241SStefano Zampini aa = aav; 5228ce496241SStefano Zampini ba = bav; 522901b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5231dea91ad1SHong Zhang ci[0] = 0; 5232ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5235dea91ad1SHong Zhang k = 0; 523601b7ae99SHong Zhang for (i = 0; i < am; i++) { 52375a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52385a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 523901b7ae99SHong Zhang /* off-diagonal portion of A */ 52405a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52415a7d977cSHong Zhang col = cmap[*bj]; 52425a7d977cSHong Zhang if (col >= cstart) break; 52439371c9d4SSatish Balay cj[k] = col; 52449371c9d4SSatish Balay bj++; 52455a7d977cSHong Zhang ca[k++] = *ba++; 52465a7d977cSHong Zhang } 52475a7d977cSHong Zhang /* diagonal portion of A */ 52485a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52495a7d977cSHong Zhang cj[k] = cstart + *aj++; 52505a7d977cSHong Zhang ca[k++] = *aa++; 52515a7d977cSHong Zhang } 52525a7d977cSHong Zhang /* off-diagonal portion of A */ 52535a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52545a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52555a7d977cSHong Zhang ca[k++] = *ba++; 52565a7d977cSHong Zhang } 525725616d81SHong Zhang } 5258dea91ad1SHong Zhang /* put together the new matrix */ 52599566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5260dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5261dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5262dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5263e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5264e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5265dea91ad1SHong Zhang mat->nonew = 0; 52665a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52675a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5268fff043a9SJunchao Zhang ci = mat->i; 5269fff043a9SJunchao Zhang cj = mat->j; 52709566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52715a7d977cSHong Zhang for (i = 0; i < am; i++) { 52725a7d977cSHong Zhang /* off-diagonal portion of A */ 52735a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52745a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52755a7d977cSHong Zhang col = cmap[*bj]; 52765a7d977cSHong Zhang if (col >= cstart) break; 52779371c9d4SSatish Balay *cam++ = *ba++; 52789371c9d4SSatish Balay bj++; 52795a7d977cSHong Zhang } 52805a7d977cSHong Zhang /* diagonal portion of A */ 5281ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5282a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52835a7d977cSHong Zhang /* off-diagonal portion of A */ 5284f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52859371c9d4SSatish Balay *cam++ = *ba++; 52869371c9d4SSatish Balay bj++; 5287f33d1a9aSHong Zhang } 52885a7d977cSHong Zhang } 52899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 529098921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52939566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 529525616d81SHong Zhang } 529625616d81SHong Zhang 5297ed502f03SStefano Zampini /*@ 529811a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52994cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5300ed502f03SStefano Zampini 5301ed502f03SStefano Zampini Not Collective 5302ed502f03SStefano Zampini 5303ed502f03SStefano Zampini Input Parameters: 5304ed502f03SStefano Zampini + A - the matrix 530511a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5306ed502f03SStefano Zampini 5307d8d19677SJose E. Roman Output Parameters: 53082ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5309ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5310ed502f03SStefano Zampini 5311ed502f03SStefano Zampini Level: developer 5312ed502f03SStefano Zampini 531311a5261eSBarry Smith Note: 53142ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53154cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5316ed502f03SStefano Zampini 53171cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5318ed502f03SStefano Zampini @*/ 5319d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5320d71ae5a4SJacob Faibussowitsch { 5321ed502f03SStefano Zampini Mat Ao, Ad; 5322ed502f03SStefano Zampini const PetscInt *cmap; 5323ed502f03SStefano Zampini PetscMPIInt size; 5324ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5325ed502f03SStefano Zampini 5326ed502f03SStefano Zampini PetscFunctionBegin; 53279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5329ed502f03SStefano Zampini if (size == 1) { 5330ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53319566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5332ed502f03SStefano Zampini *A_loc = Ad; 5333ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53349566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5335ed502f03SStefano Zampini } 53369566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5338ed502f03SStefano Zampini } 53399566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53409566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5341ed502f03SStefano Zampini if (f) { 53429566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5343ed502f03SStefano Zampini } else { 5344ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5345ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5346ed502f03SStefano Zampini Mat_SeqAIJ *c; 5347ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5348ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5349ed502f03SStefano Zampini PetscInt *ci, *cj; 5350ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5351ed502f03SStefano Zampini PetscScalar *ca; 5352ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5353ed502f03SStefano Zampini 53549566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53559566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5358ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5359ed502f03SStefano Zampini PetscInt k; 53609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5363ed502f03SStefano Zampini ci[0] = 0; 5364ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5365ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5366ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5367ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5368ed502f03SStefano Zampini /* diagonal portion of A */ 5369ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5370ed502f03SStefano Zampini cj[k] = *aj++; 5371ed502f03SStefano Zampini ca[k] = *aa++; 5372ed502f03SStefano Zampini } 5373ed502f03SStefano Zampini /* off-diagonal portion of A */ 5374ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5375ed502f03SStefano Zampini cj[k] = dn + *bj++; 5376ed502f03SStefano Zampini ca[k] = *ba++; 5377ed502f03SStefano Zampini } 5378ed502f03SStefano Zampini } 5379ed502f03SStefano Zampini /* put together the new matrix */ 53809566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5381ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5382ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5383ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5384ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5385ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5386ed502f03SStefano Zampini c->nonew = 0; 53879566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5388ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5390ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5391ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5392ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5393ed502f03SStefano Zampini /* diagonal portion of A */ 5394ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5395ed502f03SStefano Zampini /* off-diagonal portion of A */ 5396ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5397ed502f03SStefano Zampini } 53989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 539998921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 54009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 54019566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5402ed502f03SStefano Zampini if (glob) { 5403ed502f03SStefano Zampini PetscInt cst, *gidx; 5404ed502f03SStefano Zampini 54059566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 54069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5407ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5408ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54099566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5410ed502f03SStefano Zampini } 5411ed502f03SStefano Zampini } 54129566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5414ed502f03SStefano Zampini } 5415ed502f03SStefano Zampini 541632fba14fSHong Zhang /*@C 541711a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 541832fba14fSHong Zhang 541932fba14fSHong Zhang Not Collective 542032fba14fSHong Zhang 542132fba14fSHong Zhang Input Parameters: 542232fba14fSHong Zhang + A - the matrix 542311a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 542420f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 542520f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 542632fba14fSHong Zhang 542732fba14fSHong Zhang Output Parameter: 542832fba14fSHong Zhang . A_loc - the local sequential matrix generated 542932fba14fSHong Zhang 543032fba14fSHong Zhang Level: developer 543132fba14fSHong Zhang 54321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 543332fba14fSHong Zhang @*/ 5434d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5435d71ae5a4SJacob Faibussowitsch { 543632fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 543732fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 543832fba14fSHong Zhang IS isrowa, iscola; 543932fba14fSHong Zhang Mat *aloc; 54404a2b5492SBarry Smith PetscBool match; 544132fba14fSHong Zhang 544232fba14fSHong Zhang PetscFunctionBegin; 54439566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 544428b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54459566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 544632fba14fSHong Zhang if (!row) { 54479371c9d4SSatish Balay start = A->rmap->rstart; 54489371c9d4SSatish Balay end = A->rmap->rend; 54499566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 545032fba14fSHong Zhang } else { 545132fba14fSHong Zhang isrowa = *row; 545232fba14fSHong Zhang } 545332fba14fSHong Zhang if (!col) { 5454d0f46423SBarry Smith start = A->cmap->rstart; 545532fba14fSHong Zhang cmap = a->garray; 5456d0f46423SBarry Smith nzA = a->A->cmap->n; 5457d0f46423SBarry Smith nzB = a->B->cmap->n; 54589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 545932fba14fSHong Zhang ncols = 0; 546032fba14fSHong Zhang for (i = 0; i < nzB; i++) { 546132fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 546232fba14fSHong Zhang else break; 546332fba14fSHong Zhang } 546432fba14fSHong Zhang imark = i; 546532fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 546632fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54679566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 546832fba14fSHong Zhang } else { 546932fba14fSHong Zhang iscola = *col; 547032fba14fSHong Zhang } 547132fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 547332fba14fSHong Zhang aloc[0] = *A_loc; 547432fba14fSHong Zhang } 54759566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5476109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54779566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5478109e0772SStefano Zampini } 547932fba14fSHong Zhang *A_loc = aloc[0]; 54809566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 548148a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 548248a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54839566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548532fba14fSHong Zhang } 548632fba14fSHong Zhang 54875c65b9ecSFande Kong /* 54885c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54895c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54905c65b9ecSFande Kong * on a global size. 54915c65b9ecSFande Kong * */ 5492ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5493d71ae5a4SJacob Faibussowitsch { 54945c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 54955c65b9ecSFande Kong Mat_SeqAIJ *pd = (Mat_SeqAIJ *)(p->A)->data, *po = (Mat_SeqAIJ *)(p->B)->data, *p_oth; 5496131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5497131c27b5Sprj- PetscMPIInt owner; 54985c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54995c65b9ecSFande Kong const PetscInt *lrowindices; 55005c65b9ecSFande Kong PetscSF sf, osf; 55015c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 55025c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 55035c65b9ecSFande Kong MPI_Comm comm; 55045c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5505fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 55065c65b9ecSFande Kong 55075c65b9ecSFande Kong PetscFunctionBegin; 55089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55095c65b9ecSFande Kong /* plocalsize is the number of roots 55105c65b9ecSFande Kong * nrows is the number of leaves 55115c65b9ecSFande Kong * */ 55129566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55139566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55149566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55159566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55165c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55175c65b9ecSFande Kong /* Find a remote index and an owner for a row 55185c65b9ecSFande Kong * The row could be local or remote 55195c65b9ecSFande Kong * */ 552034bcad68SFande Kong owner = 0; 552134bcad68SFande Kong lidx = 0; 55229566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55235c65b9ecSFande Kong iremote[i].index = lidx; 55245c65b9ecSFande Kong iremote[i].rank = owner; 55255c65b9ecSFande Kong } 55265c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55279566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5528f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55295c65b9ecSFande Kong * offsets 55305c65b9ecSFande Kong * */ 55319566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55329566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55339566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5534bc8e477aSFande Kong 55359566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55369566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55379566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55385c65b9ecSFande Kong roffsets[0] = 0; 55395c65b9ecSFande Kong roffsets[1] = 0; 55405c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55414cf0e950SBarry Smith /* diagonal */ 55425c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55434cf0e950SBarry Smith /* off-diagonal */ 55445c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55455c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55465c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55475c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55485c65b9ecSFande Kong } 55499566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55509566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55515c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55539566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55549566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55559566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55579566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55589566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55595c65b9ecSFande Kong dntotalcols = 0; 55605c65b9ecSFande Kong ontotalcols = 0; 5561bc8e477aSFande Kong ncol = 0; 55625c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55635c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5564bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55654cf0e950SBarry Smith /* diagonal */ 55665c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55674cf0e950SBarry Smith /* off-diagonal */ 55685c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55695c65b9ecSFande Kong } 55705c65b9ecSFande Kong /* We do not need to figure the right number of columns 55715c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55725c65b9ecSFande Kong * */ 55739566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55749566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55759566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55765c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55774cf0e950SBarry Smith /* diagonal */ 55789566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55794cf0e950SBarry Smith /* off-diagonal */ 55809566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55814cf0e950SBarry Smith /* diagonal */ 55829566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55834cf0e950SBarry Smith /* off-diagonal */ 55849566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55855c65b9ecSFande Kong dntotalcols = 0; 55865c65b9ecSFande Kong ontotalcols = 0; 55875c65b9ecSFande Kong ntotalcols = 0; 55885c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 558934bcad68SFande Kong owner = 0; 55909566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55915c65b9ecSFande Kong /* Set iremote for diag matrix */ 55925c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55935c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55945c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55955c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55965c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55975c65b9ecSFande Kong } 55984cf0e950SBarry Smith /* off-diagonal */ 55995c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 56005c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 56015c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 56025c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 56035c65b9ecSFande Kong } 56045c65b9ecSFande Kong } 56059566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 56069566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 56079566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 56089566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56095c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56105c65b9ecSFande Kong * Diag matrix 56115c65b9ecSFande Kong * */ 56129566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56139566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56149566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56155c65b9ecSFande Kong 56169566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56174cf0e950SBarry Smith /* off-diagonal */ 56189566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56199566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56209566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56234cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56249566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56259566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56269566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56275c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56285c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56299566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56305c65b9ecSFande Kong /* We want P_oth store global indices */ 56319566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56325c65b9ecSFande Kong /* Use memory scalable approach */ 56339566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56349566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56359566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56369566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56375c65b9ecSFande Kong /* Convert back to local indices */ 56385c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56405c65b9ecSFande Kong nout = 0; 56419566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 564208401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56439566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56445c65b9ecSFande Kong /* Exchange values */ 56459566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56469566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56489566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56495c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56505c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56519566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56529566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56535c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56549566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56559566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56579566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56595c65b9ecSFande Kong } 56605c65b9ecSFande Kong 56615c65b9ecSFande Kong /* 56625c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56635c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56645c65b9ecSFande Kong * */ 5665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5666d71ae5a4SJacob Faibussowitsch { 56675c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5668bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5669bc8e477aSFande Kong IS rows, map; 5670bc8e477aSFande Kong PetscHMapI hamp; 5671bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56725c65b9ecSFande Kong MPI_Comm comm; 56735c65b9ecSFande Kong PetscSF sf, osf; 5674bc8e477aSFande Kong PetscBool has; 56755c65b9ecSFande Kong 56765c65b9ecSFande Kong PetscFunctionBegin; 56779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56789566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56795c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56805c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56815c65b9ecSFande Kong * */ 56825c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56835c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5684eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56859566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5686bc8e477aSFande Kong count = 0; 5687bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5688bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5689bc8e477aSFande Kong key = a->garray[i] / dof; 56909566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5691bc8e477aSFande Kong if (!has) { 5692bc8e477aSFande Kong mapping[i] = count; 56939566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5694bc8e477aSFande Kong } else { 5695bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5696bc8e477aSFande Kong mapping[i] = count - 1; 56975c65b9ecSFande Kong } 5698bc8e477aSFande Kong } 56999566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 57009566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5701eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 57029566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 57035c65b9ecSFande Kong off = 0; 57049566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 57059566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 57069566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 57079566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 57085c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57099566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57109566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57119566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57139566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57145c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57155c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 571635cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5717fff043a9SJunchao Zhang */ 5718fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5719fff043a9SJunchao Zhang 57209566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57219566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 572208401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57235c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57245c65b9ecSFande Kong /* Update values in place */ 57259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57279566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57289566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57299566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57309566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57336718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57349566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57365c65b9ecSFande Kong } 57375c65b9ecSFande Kong 573825616d81SHong Zhang /*@C 573920f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 574025616d81SHong Zhang 5741c3339decSBarry Smith Collective 574225616d81SHong Zhang 574325616d81SHong Zhang Input Parameters: 574411a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 574511a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 574611a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 574725616d81SHong Zhang 5748f1a722f8SMatthew G. Knepley Output Parameters: 574927430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 575027430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5751f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 575225616d81SHong Zhang 575325616d81SHong Zhang Level: developer 575425616d81SHong Zhang 575520f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 575625616d81SHong Zhang @*/ 5757d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5758d71ae5a4SJacob Faibussowitsch { 5759899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5760b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 576125616d81SHong Zhang IS isrowb, iscolb; 57620298fd71SBarry Smith Mat *bseq = NULL; 576325616d81SHong Zhang 576425616d81SHong Zhang PetscFunctionBegin; 576520f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 576620f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57679566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 576825616d81SHong Zhang 576925616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5770d0f46423SBarry Smith start = A->cmap->rstart; 577125616d81SHong Zhang cmap = a->garray; 5772d0f46423SBarry Smith nzA = a->A->cmap->n; 5773d0f46423SBarry Smith nzB = a->B->cmap->n; 57749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 577525616d81SHong Zhang ncols = 0; 57760390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 577725616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 577825616d81SHong Zhang else break; 577925616d81SHong Zhang } 578025616d81SHong Zhang imark = i; 57810390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57820390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57839566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57849566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 578525616d81SHong Zhang } else { 578608401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57879371c9d4SSatish Balay isrowb = *rowb; 57889371c9d4SSatish Balay iscolb = *colb; 57899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 579025616d81SHong Zhang bseq[0] = *B_seq; 579125616d81SHong Zhang } 57929566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 579325616d81SHong Zhang *B_seq = bseq[0]; 57949566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 579525616d81SHong Zhang if (!rowb) { 57969566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 579725616d81SHong Zhang } else { 579825616d81SHong Zhang *rowb = isrowb; 579925616d81SHong Zhang } 580025616d81SHong Zhang if (!colb) { 58019566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 580225616d81SHong Zhang } else { 580325616d81SHong Zhang *colb = iscolb; 580425616d81SHong Zhang } 58059566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 58063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 580725616d81SHong Zhang } 5808429d309bSHong Zhang 5809f8487c73SHong Zhang /* 581027430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 581101b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5812429d309bSHong Zhang 5813c3339decSBarry Smith Collective 5814429d309bSHong Zhang 5815429d309bSHong Zhang Input Parameters: 581627430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 581727430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5818429d309bSHong Zhang 5819429d309bSHong Zhang Output Parameter: 58200298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58210298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58220298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5823598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5824429d309bSHong Zhang 582511a5261eSBarry Smith Developer Note: 582611a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58276eb45d04SBarry Smith for this matrix. This is not desirable.. 58286eb45d04SBarry Smith 5829429d309bSHong Zhang Level: developer 5830429d309bSHong Zhang 5831f8487c73SHong Zhang */ 5832d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5833d71ae5a4SJacob Faibussowitsch { 5834899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 583587025532SHong Zhang Mat_SeqAIJ *b_oth; 58364b8d542aSHong Zhang VecScatter ctx; 5837ce94432eSBarry Smith MPI_Comm comm; 58383515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58393515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5840277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 5841f4259b30SLisandro Dalcin PetscInt i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len; 5842277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5843ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5844ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5845429d309bSHong Zhang 5846429d309bSHong Zhang PetscFunctionBegin; 58479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5849a7c7454dSHong Zhang 585020f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 585120f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58529566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5854a6b2eed2SHong Zhang 5855ec07b8f8SHong Zhang if (size == 1) { 5856ec07b8f8SHong Zhang startsj_s = NULL; 5857ec07b8f8SHong Zhang bufa_ptr = NULL; 585852f7967eSHong Zhang *B_oth = NULL; 58593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5860ec07b8f8SHong Zhang } 5861ec07b8f8SHong Zhang 5862fa83eaafSHong Zhang ctx = a->Mvctx; 58634b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58644b8d542aSHong Zhang 58659566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58663515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58679566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58689566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5870ddea5d60SJunchao Zhang rwaits = reqs; 58718e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5872429d309bSHong Zhang 5873b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5874429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5875a6b2eed2SHong Zhang /* i-array */ 5876a6b2eed2SHong Zhang /* post receives */ 58779566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5878a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 587974268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5880e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5882429d309bSHong Zhang } 5883a6b2eed2SHong Zhang 5884a6b2eed2SHong Zhang /* pack the outgoing message */ 58859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58862205254eSKarl Rupp 58872205254eSKarl Rupp sstartsj[0] = 0; 58882205254eSKarl Rupp rstartsj[0] = 0; 5889a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58903515ee7fSJunchao Zhang if (nsends) { 58913515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58933515ee7fSJunchao Zhang } 5894a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58953515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5896e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 589787025532SHong Zhang for (j = 0; j < nrows; j++) { 5898d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5899e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 59009566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 59012205254eSKarl Rupp 5902e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 59032205254eSKarl Rupp 5904e42f35eeSHong Zhang len += ncols; 59059566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5906e42f35eeSHong Zhang } 5907a6b2eed2SHong Zhang k++; 5908429d309bSHong Zhang } 59099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59102205254eSKarl Rupp 5911dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5912429d309bSHong Zhang } 591387025532SHong Zhang /* recvs and sends of i-array are completed */ 59149566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59159566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5916e42f35eeSHong Zhang 5917a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5920a6b2eed2SHong Zhang 592187025532SHong Zhang /* create i-array of B_oth */ 59229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59232205254eSKarl Rupp 592487025532SHong Zhang b_othi[0] = 0; 5925a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5926a6b2eed2SHong Zhang k = 0; 5927a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59283515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59293515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 593087025532SHong Zhang for (j = 0; j < nrows; j++) { 593187025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59329566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5933f91af8c7SBarry Smith k++; 5934a6b2eed2SHong Zhang } 5935dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5936a6b2eed2SHong Zhang } 59379566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5938a6b2eed2SHong Zhang 59396aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5942a6b2eed2SHong Zhang 594387025532SHong Zhang /* j-array */ 5944a6b2eed2SHong Zhang /* post receives of j-array */ 5945a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 594687025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5948a6b2eed2SHong Zhang } 5949e42f35eeSHong Zhang 5950e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59513515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5952a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5953e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5954a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 595587025532SHong Zhang for (j = 0; j < nrows; j++) { 5956d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5957e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59589566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5959ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59609566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5961e42f35eeSHong Zhang } 596287025532SHong Zhang } 59639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 596487025532SHong Zhang } 596587025532SHong Zhang 596687025532SHong Zhang /* recvs and sends of j-array are completed */ 59679566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 596887025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5969b7f45c76SHong Zhang sstartsj = *startsj_s; 59701d79065fSBarry Smith rstartsj = *startsj_r; 597187025532SHong Zhang bufa = *bufa_ptr; 597287025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 59739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5974ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 597587025532SHong Zhang 597687025532SHong Zhang /* a-array */ 597787025532SHong Zhang /* post receives of a-array */ 597887025532SHong Zhang for (i = 0; i < nrecvs; i++) { 597987025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 598187025532SHong Zhang } 5982e42f35eeSHong Zhang 5983e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59843515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 598587025532SHong Zhang for (i = 0; i < nsends; i++) { 5986e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 598787025532SHong Zhang bufA = bufa + sstartsj[i]; 598887025532SHong Zhang for (j = 0; j < nrows; j++) { 5989d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5990e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59919566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5992ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59939566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5994e42f35eeSHong Zhang } 5995a6b2eed2SHong Zhang } 59969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5997a6b2eed2SHong Zhang } 599887025532SHong Zhang /* recvs and sends of a-array are completed */ 59999566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 60009566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 6001a6b2eed2SHong Zhang 600287025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 6003a6b2eed2SHong Zhang /* put together the new matrix */ 60049566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 6005a6b2eed2SHong Zhang 6006a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6007a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 600887025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6009e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6010e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 601187025532SHong Zhang b_oth->nonew = 0; 6012a6b2eed2SHong Zhang 60139566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6014b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60159566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60169566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6017dea91ad1SHong Zhang } else { 6018b7f45c76SHong Zhang *startsj_s = sstartsj; 60191d79065fSBarry Smith *startsj_r = rstartsj; 602087025532SHong Zhang *bufa_ptr = bufa; 602187025532SHong Zhang } 6022fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6024dea91ad1SHong Zhang } 60253515ee7fSJunchao Zhang 60269566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60279566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60289566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6030429d309bSHong Zhang } 6031ccd8e176SBarry Smith 6032cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6033cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6034ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60359779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6036a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6037191b95cbSRichard Tran Mills #endif 6038ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6039cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60405d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6041cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60425d7652ecSHong Zhang #endif 6043d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6044d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6045d24d4204SJose E. Roman #endif 604663c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 604763c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 604863c07aadSStefano Zampini #endif 60493338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60503338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60513338378cSStefano Zampini #endif 6052d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6053d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6054d5e393b6SSuyash Tandon #endif 60553d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60563d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60573d0639e7SStefano Zampini #endif 6058d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60594222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60604222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 606117667f90SBarry Smith 6062fc4dec0aSBarry Smith /* 6063fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6064fc4dec0aSBarry Smith 6065fc4dec0aSBarry Smith n p p 60662da392ccSBarry Smith [ ] [ ] [ ] 60672da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60682da392ccSBarry Smith [ ] [ ] [ ] 6069fc4dec0aSBarry Smith 6070fc4dec0aSBarry Smith */ 6071d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6072d71ae5a4SJacob Faibussowitsch { 6073fc4dec0aSBarry Smith Mat At, Bt, Ct; 6074fc4dec0aSBarry Smith 6075fc4dec0aSBarry Smith PetscFunctionBegin; 60769566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60779566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 60789566063dSJacob Faibussowitsch PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct)); 60799566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60809566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60817fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60829566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60839566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6085fc4dec0aSBarry Smith } 6086fc4dec0aSBarry Smith 6087d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6088d71ae5a4SJacob Faibussowitsch { 60896718818eSStefano Zampini PetscBool cisdense; 6090fc4dec0aSBarry Smith 6091fc4dec0aSBarry Smith PetscFunctionBegin; 609208401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60949566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6095d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 609648a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60979566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6098f75ecaa4SHong Zhang 60994222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 61003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6101fc4dec0aSBarry Smith } 6102fc4dec0aSBarry Smith 6103d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6104d71ae5a4SJacob Faibussowitsch { 61054222ddf1SHong Zhang Mat_Product *product = C->product; 61064222ddf1SHong Zhang Mat A = product->A, B = product->B; 6107fc4dec0aSBarry Smith 6108fc4dec0aSBarry Smith PetscFunctionBegin; 610920f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 611020f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61114222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61124222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6114fc4dec0aSBarry Smith } 6115fc4dec0aSBarry Smith 6116d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6117d71ae5a4SJacob Faibussowitsch { 61184222ddf1SHong Zhang Mat_Product *product = C->product; 61194222ddf1SHong Zhang 61204222ddf1SHong Zhang PetscFunctionBegin; 612148a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61234222ddf1SHong Zhang } 6124394ed5ebSJunchao Zhang 612527430b45SBarry Smith /* 612627430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6127394ed5ebSJunchao Zhang 6128394ed5ebSJunchao Zhang Input Parameters: 6129394ed5ebSJunchao Zhang 6130651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6131651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6132394ed5ebSJunchao Zhang 6133158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6134394ed5ebSJunchao Zhang 6135394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6136394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6137394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6138394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6139394ed5ebSJunchao Zhang 6140394ed5ebSJunchao Zhang Similar for Set2. 6141394ed5ebSJunchao Zhang 6142394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6143394ed5ebSJunchao Zhang 6144158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6145394ed5ebSJunchao Zhang 6146394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6147394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6148394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6149394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6150394ed5ebSJunchao Zhang */ 6151d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6152d71ae5a4SJacob Faibussowitsch { 6153394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6154394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6155394ed5ebSJunchao Zhang 6156394ed5ebSJunchao Zhang PetscFunctionBegin; 61579566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6158394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6159394ed5ebSJunchao Zhang i[0] = 0; 6160394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6161394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6162394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6163394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6164394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6165394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6166394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6167394ed5ebSJunchao Zhang j[t] = j1[b1]; 6168394ed5ebSJunchao Zhang imap1[t1] = t; 6169394ed5ebSJunchao Zhang imap2[t2] = t; 6170394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6171394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61729371c9d4SSatish Balay t1++; 61739371c9d4SSatish Balay t2++; 61749371c9d4SSatish Balay t++; 6175394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6176394ed5ebSJunchao Zhang j[t] = j1[b1]; 6177394ed5ebSJunchao Zhang imap1[t1] = t; 6178394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61799371c9d4SSatish Balay t1++; 61809371c9d4SSatish Balay t++; 6181394ed5ebSJunchao Zhang } else { 6182394ed5ebSJunchao Zhang j[t] = j2[b2]; 6183394ed5ebSJunchao Zhang imap2[t2] = t; 6184394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61859371c9d4SSatish Balay t2++; 61869371c9d4SSatish Balay t++; 6187394ed5ebSJunchao Zhang } 6188394ed5ebSJunchao Zhang } 6189394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6190394ed5ebSJunchao Zhang while (b1 < e1) { 6191394ed5ebSJunchao Zhang j[t] = j1[b1]; 6192394ed5ebSJunchao Zhang imap1[t1] = t; 6193394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61949371c9d4SSatish Balay t1++; 61959371c9d4SSatish Balay t++; 6196394ed5ebSJunchao Zhang } 6197394ed5ebSJunchao Zhang while (b2 < e2) { 6198394ed5ebSJunchao Zhang j[t] = j2[b2]; 6199394ed5ebSJunchao Zhang imap2[t2] = t; 6200394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 62019371c9d4SSatish Balay t2++; 62029371c9d4SSatish Balay t++; 6203394ed5ebSJunchao Zhang } 6204394ed5ebSJunchao Zhang i[r + 1] = t; 6205394ed5ebSJunchao Zhang } 62063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6207394ed5ebSJunchao Zhang } 6208394ed5ebSJunchao Zhang 620927430b45SBarry Smith /* 621027430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6211394ed5ebSJunchao Zhang 6212394ed5ebSJunchao Zhang Input Parameters: 6213394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6214394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6215394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6216394ed5ebSJunchao Zhang 6217394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6218394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6219394ed5ebSJunchao Zhang 6220394ed5ebSJunchao Zhang Output Parameters: 6221394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6222394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6223394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6224394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6225394ed5ebSJunchao Zhang 6226394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6227158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6228158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6229394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6230394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6231394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6232394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6233394ed5ebSJunchao Zhang 6234394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6235394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6236394ed5ebSJunchao Zhang 6237394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6238394ed5ebSJunchao Zhang 6239158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6240394ed5ebSJunchao Zhang */ 6241d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6242d71ae5a4SJacob Faibussowitsch { 6243394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6244394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6245394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6246394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6247394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6248394ed5ebSJunchao Zhang 6249394ed5ebSJunchao Zhang PetscFunctionBegin; 62509566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62519566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6252394ed5ebSJunchao Zhang m = rend - rstart; 6253394ed5ebSJunchao Zhang 6254651b1cf9SStefano Zampini /* Skip negative rows */ 6255651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62569371c9d4SSatish Balay if (i[k] >= 0) break; 6257394ed5ebSJunchao Zhang 6258394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6259394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6260394ed5ebSJunchao Zhang */ 6261394ed5ebSJunchao Zhang while (k < n) { 6262394ed5ebSJunchao Zhang row = i[k]; 6263394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62649371c9d4SSatish Balay for (s = k; s < n; s++) 62659371c9d4SSatish Balay if (i[s] != row) break; 6266651b1cf9SStefano Zampini 6267651b1cf9SStefano Zampini /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */ 6268394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 6269651b1cf9SStefano Zampini if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT; 627054c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6271394ed5ebSJunchao Zhang } 62729566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6273158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6274394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6275394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6276394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6277394ed5ebSJunchao Zhang 6278394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6279394ed5ebSJunchao Zhang Atot += mid - k; 6280394ed5ebSJunchao Zhang Btot += s - mid; 6281394ed5ebSJunchao Zhang 6282651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6283394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6284394ed5ebSJunchao Zhang col = j[p]; 62859371c9d4SSatish Balay do { 6286651b1cf9SStefano Zampini j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */ 62879371c9d4SSatish Balay p++; 6288651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6289394ed5ebSJunchao Zhang Annz++; 6290394ed5ebSJunchao Zhang } 6291394ed5ebSJunchao Zhang 6292651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6293394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6294394ed5ebSJunchao Zhang col = j[p]; 6295d71ae5a4SJacob Faibussowitsch do { 6296d71ae5a4SJacob Faibussowitsch p++; 6297d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6298394ed5ebSJunchao Zhang Bnnz++; 6299394ed5ebSJunchao Zhang } 6300394ed5ebSJunchao Zhang k = s; 6301394ed5ebSJunchao Zhang } 6302394ed5ebSJunchao Zhang 6303394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6304158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6305158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6306158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6307158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6308394ed5ebSJunchao Zhang 63096aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6310394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6311394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6312394ed5ebSJunchao Zhang k = rowBegin[r]; 6313394ed5ebSJunchao Zhang mid = rowMid[r]; 6314394ed5ebSJunchao Zhang s = rowEnd[r]; 63158e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63168e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6317394ed5ebSJunchao Zhang Atot += mid - k; 6318394ed5ebSJunchao Zhang Btot += s - mid; 6319394ed5ebSJunchao Zhang 6320394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6321394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6322394ed5ebSJunchao Zhang col = j[p]; 6323394ed5ebSJunchao Zhang q = p; 6324d71ae5a4SJacob Faibussowitsch do { 6325d71ae5a4SJacob Faibussowitsch p++; 6326d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6327394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6328394ed5ebSJunchao Zhang Annz++; 6329394ed5ebSJunchao Zhang } 6330394ed5ebSJunchao Zhang 6331394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6332394ed5ebSJunchao Zhang col = j[p]; 6333394ed5ebSJunchao Zhang q = p; 6334d71ae5a4SJacob Faibussowitsch do { 6335d71ae5a4SJacob Faibussowitsch p++; 6336d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6337394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6338394ed5ebSJunchao Zhang Bnnz++; 6339394ed5ebSJunchao Zhang } 6340394ed5ebSJunchao Zhang } 6341394ed5ebSJunchao Zhang /* Output */ 6342394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6343394ed5ebSJunchao Zhang *Annz_ = Annz; 6344394ed5ebSJunchao Zhang *Atot_ = Atot; 6345394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6346394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6347394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6348394ed5ebSJunchao Zhang *Btot_ = Btot; 6349394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6351394ed5ebSJunchao Zhang } 6352394ed5ebSJunchao Zhang 635327430b45SBarry Smith /* 635427430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6355158ec288SJunchao Zhang 6356158ec288SJunchao Zhang Input Parameters: 6357158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6358158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6359158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6360651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6361158ec288SJunchao Zhang 6362158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6363158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6364158ec288SJunchao Zhang 6365158ec288SJunchao Zhang Example: 6366158ec288SJunchao Zhang nnz1 = 4 6367158ec288SJunchao Zhang nnz = 6 6368158ec288SJunchao Zhang imap = [1,3,4,5] 6369158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6370158ec288SJunchao Zhang then, 6371158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6372158ec288SJunchao Zhang */ 6373d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6374d71ae5a4SJacob Faibussowitsch { 6375158ec288SJunchao Zhang PetscCount k, p; 6376158ec288SJunchao Zhang 6377158ec288SJunchao Zhang PetscFunctionBegin; 6378158ec288SJunchao Zhang jmap_new[0] = 0; 6379158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6380158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6381158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6382158ec288SJunchao Zhang } 6383158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6385158ec288SJunchao Zhang } 6386158ec288SJunchao Zhang 63872c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data) 63882c4ab24aSJunchao Zhang { 63892c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data; 63902c4ab24aSJunchao Zhang 63912c4ab24aSJunchao Zhang PetscFunctionBegin; 63922c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63932c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63942c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63952c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63962c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63972c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63982c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63992c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 64002c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 64012c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 64022c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 64032c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 64042c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 64052c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 64062c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 64072c4ab24aSJunchao Zhang } 64082c4ab24aSJunchao Zhang 6409d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6410d71ae5a4SJacob Faibussowitsch { 6411394ed5ebSJunchao Zhang MPI_Comm comm; 6412394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6413394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6414394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6415394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64162c4ab24aSJunchao Zhang PetscContainer container; 64172c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6418394ed5ebSJunchao Zhang 6419394ed5ebSJunchao Zhang PetscFunctionBegin; 64209566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6422cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6423eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6424cbc6b225SStefano Zampini #else 64259566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6426cbc6b225SStefano Zampini #endif 64279566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6428cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6429cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6430cbc6b225SStefano Zampini 64319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64369566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64379566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64389566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64399566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6440394ed5ebSJunchao Zhang 64416aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6442394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6443394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6444e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6445e8729f6fSJunchao Zhang 6446e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6447394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6448394ed5ebSJunchao Zhang 6449394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6450394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6451394ed5ebSJunchao Zhang will have positive row indices. 6452394ed5ebSJunchao Zhang */ 6453394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 6454394ed5ebSJunchao Zhang if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT; /* e.g., -2^31, minimal to move them ahead */ 6455394ed5ebSJunchao Zhang else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */ 6456f7d195e4SLawrence Mitchell else { 6457f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 6458f7d195e4SLawrence Mitchell if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */ 6459f7d195e4SLawrence Mitchell } 6460394ed5ebSJunchao Zhang } 6461394ed5ebSJunchao Zhang 6462da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64639566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6464651b1cf9SStefano Zampini 6465651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6466651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64679371c9d4SSatish Balay if (i1[k] > PETSC_MIN_INT) break; 6468651b1cf9SStefano Zampini PetscInt i1start = k; 6469651b1cf9SStefano Zampini 64709566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */ 6471394ed5ebSJunchao Zhang for (; k < rem; k++) i1[k] += PETSC_MAX_INT; /* Revert row indices of local rows*/ 6472394ed5ebSJunchao Zhang 6473394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6474394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6475394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6476394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6477394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6478394ed5ebSJunchao Zhang const PetscInt *ranges; 6479394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6480394ed5ebSJunchao Zhang 64819566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64829566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6483394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6484394ed5ebSJunchao Zhang PetscMPIInt owner; 6485394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6486cbc6b225SStefano Zampini 6487394ed5ebSJunchao Zhang /* Locate a row range */ 6488394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64899566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6490394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6491394ed5ebSJunchao Zhang 6492394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 64939566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6494394ed5ebSJunchao Zhang 6495394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6496394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6497394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6498394ed5ebSJunchao Zhang PetscInt *nentries2; 6499394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6500cbc6b225SStefano Zampini 65019566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 65029566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 65039566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 65049566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6505394ed5ebSJunchao Zhang sendto = sendto2; 6506394ed5ebSJunchao Zhang nentries = nentries2; 6507394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6508394ed5ebSJunchao Zhang } 6509394ed5ebSJunchao Zhang sendto[nsend] = owner; 6510394ed5ebSJunchao Zhang nentries[nsend] = p - k; 65119566063dSJacob Faibussowitsch PetscCall(PetscCountCast(p - k, &nentries[nsend])); 6512394ed5ebSJunchao Zhang nsend++; 6513394ed5ebSJunchao Zhang k = p; 6514394ed5ebSJunchao Zhang } 6515394ed5ebSJunchao Zhang 6516394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6517394ed5ebSJunchao Zhang PetscSF sf1; 6518394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6519394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6520394ed5ebSJunchao Zhang PetscInt *offsets; 6521394ed5ebSJunchao Zhang PetscSFNode *iremote; 6522394ed5ebSJunchao Zhang 65239566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6526394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6527394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6528394ed5ebSJunchao Zhang iremote[k].index = 0; 6529394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 653054c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6531394ed5ebSJunchao Zhang } 65329566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65339566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65349566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65359566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 653663a3b9bcSJacob Faibussowitsch PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT "", nleaves2, n1 - rem); 6537394ed5ebSJunchao Zhang 6538394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6539394ed5ebSJunchao Zhang PetscSF sf2; 6540394ed5ebSJunchao Zhang nroots = nroots2; 6541394ed5ebSJunchao Zhang nleaves = nleaves2; 65429566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65439566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6545394ed5ebSJunchao Zhang p = 0; 6546394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 654754c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6548394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6549394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 6550394ed5ebSJunchao Zhang iremote[p].index = offsets[k] + q; 6551394ed5ebSJunchao Zhang } 6552394ed5ebSJunchao Zhang } 65539566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6554394ed5ebSJunchao Zhang 6555394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6556394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6557394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65589566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 65599566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1 + rem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 65609566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1 + rem, i2, MPI_REPLACE)); 65619566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1 + rem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 65629566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1 + rem, j2, MPI_REPLACE)); 6563394ed5ebSJunchao Zhang 65649566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65659566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6566394ed5ebSJunchao Zhang 6567394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6568394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65699566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6570394ed5ebSJunchao Zhang 6571651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6572651b1cf9SStefano Zampini PetscCount *Cperm1; 6573651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6574651b1cf9SStefano Zampini PetscCall(PetscArraycpy(Cperm1, perm1 + rem, nleaves)); 6575651b1cf9SStefano Zampini 6576651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6577651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6578651b1cf9SStefano Zampini PetscBool hypre; 6579651b1cf9SStefano Zampini const char *name; 6580651b1cf9SStefano Zampini PetscCall(PetscObjectGetName((PetscObject)mat, &name)); 6581651b1cf9SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre)); 6582651b1cf9SStefano Zampini if (hypre) { 6583651b1cf9SStefano Zampini PetscInt *minj; 6584651b1cf9SStefano Zampini PetscBT hasdiag; 6585651b1cf9SStefano Zampini 6586651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6587651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 6588651b1cf9SStefano Zampini for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT; 6589651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6590651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6591651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6592651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6593651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6594651b1cf9SStefano Zampini } 6595651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6596651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6597651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6598651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6599651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6600651b1cf9SStefano Zampini } 6601651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6602651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6603651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6604651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6605651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6606651b1cf9SStefano Zampini } 6607651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6608651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6609651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6610651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6611651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6612651b1cf9SStefano Zampini } 6613651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6614651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6615651b1cf9SStefano Zampini } 6616651b1cf9SStefano Zampini 6617651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6618651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6619651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6620651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6621394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6622394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6623394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6624394ed5ebSJunchao Zhang 6625651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66269566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6627651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66289566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6629394ed5ebSJunchao Zhang 6630394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6631394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6632394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6633394ed5ebSJunchao Zhang 66349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6638394ed5ebSJunchao Zhang 6639394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6640158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6641158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6642158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6643158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6644394ed5ebSJunchao Zhang 66459566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66469566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6647158ec288SJunchao Zhang 6648158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6649158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6650158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6651158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6652158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6653158ec288SJunchao Zhang 6654158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6655158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6656158ec288SJunchao Zhang 6657158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6658158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6659158ec288SJunchao Zhang 6660158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6661158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6662158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6663158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66649566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66659566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6666e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66679566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6668394ed5ebSJunchao Zhang 6669158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6670158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6671158ec288SJunchao Zhang 6672394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6673394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6674394ed5ebSJunchao Zhang PetscInt *Aj_new; 66759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66769566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66779566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6678394ed5ebSJunchao Zhang Aj = Aj_new; 6679394ed5ebSJunchao Zhang } 6680394ed5ebSJunchao Zhang 6681394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6682394ed5ebSJunchao Zhang PetscInt *Bj_new; 66839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66849566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66859566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6686394ed5ebSJunchao Zhang Bj = Bj_new; 6687394ed5ebSJunchao Zhang } 6688394ed5ebSJunchao Zhang 6689cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6690394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6691cbc6b225SStefano Zampini MatType rtype; 6692394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6693cf8ba265SJunchao Zhang PetscObjectState state; 66949566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66959566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6696394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 66979371c9d4SSatish Balay if (cstart) { 66989371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 66999371c9d4SSatish Balay } 6700c508b908SBarry Smith 67019566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6702c508b908SBarry Smith 6703c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6704c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 67059566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 6706c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6707c508b908SBarry Smith 6708c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6709c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 67109566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 6711c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6712c508b908SBarry Smith 67139566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67145bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6715cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6716cf8ba265SJunchao Zhang PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6717cbc6b225SStefano Zampini 6718394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6719394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 6720394ed5ebSJunchao Zhang a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */ 6721394ed5ebSJunchao Zhang a->free_a = b->free_a = PETSC_TRUE; 6722394ed5ebSJunchao Zhang a->free_ij = b->free_ij = PETSC_TRUE; 6723394ed5ebSJunchao Zhang 6724cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67259566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67269566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67279566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67289566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6729cbc6b225SStefano Zampini 67302c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67312c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67322c4ab24aSJunchao Zhang coo->n = coo_n; 67332c4ab24aSJunchao Zhang coo->sf = sf2; 67342c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67352c4ab24aSJunchao Zhang coo->recvlen = nroots; 67362c4ab24aSJunchao Zhang coo->Annz = Annz; 67372c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67382c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67392c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67402c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67412c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67422c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67432c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67442c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67452c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67462c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67472c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67482c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67492c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67502c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67512c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67522c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67532c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67542c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67552c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67562c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67572c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67582c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 67592c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67602c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67612c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6763394ed5ebSJunchao Zhang } 6764394ed5ebSJunchao Zhang 6765d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6766d71ae5a4SJacob Faibussowitsch { 6767394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6768394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6769394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67702c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67712c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67722c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67732c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67742c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67752c4ab24aSJunchao Zhang PetscContainer container; 67762c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6777394ed5ebSJunchao Zhang 6778394ed5ebSJunchao Zhang PetscFunctionBegin; 67792c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67802c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67812c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67822c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67832c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67842c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67852c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67862c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67872c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67882c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67892c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67902c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67912c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67922c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67932c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67942c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 67952c4ab24aSJunchao Zhang 67969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 67979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6798394ed5ebSJunchao Zhang 6799394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 68002c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6801394ed5ebSJunchao Zhang 6802394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 68032c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6804394ed5ebSJunchao Zhang /* Add local entries to A and B */ 68052c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6806da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6807158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6808158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6809394ed5ebSJunchao Zhang } 68102c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6811158ec288SJunchao Zhang PetscScalar sum = 0.0; 6812158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6813158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6814394ed5ebSJunchao Zhang } 68152c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6816394ed5ebSJunchao Zhang 6817394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68182c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6819394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6820394ed5ebSJunchao Zhang } 68212c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6822394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6823394ed5ebSJunchao Zhang } 68249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6827394ed5ebSJunchao Zhang } 6828394ed5ebSJunchao Zhang 6829ccd8e176SBarry Smith /*MC 6830ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6831ccd8e176SBarry Smith 6832ccd8e176SBarry Smith Options Database Keys: 683311a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6834ccd8e176SBarry Smith 6835ccd8e176SBarry Smith Level: beginner 68360cd7f59aSBarry Smith 68370cd7f59aSBarry Smith Notes: 68382ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68390cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68400cd7f59aSBarry Smith in the matrix 68410cd7f59aSBarry Smith 684211a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 684311a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6844ccd8e176SBarry Smith 68451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6846ccd8e176SBarry Smith M*/ 6847d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6848d71ae5a4SJacob Faibussowitsch { 6849ccd8e176SBarry Smith Mat_MPIAIJ *b; 6850ccd8e176SBarry Smith PetscMPIInt size; 6851ccd8e176SBarry Smith 6852ccd8e176SBarry Smith PetscFunctionBegin; 68539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68542205254eSKarl Rupp 68554dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6856ccd8e176SBarry Smith B->data = (void *)b; 6857aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6858ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6859ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6860ccd8e176SBarry Smith b->size = size; 68612205254eSKarl Rupp 68629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6863ccd8e176SBarry Smith 6864ccd8e176SBarry Smith /* build cache for off array entries formed */ 68659566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68662205254eSKarl Rupp 6867ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6868f4259b30SLisandro Dalcin b->colmap = NULL; 6869f4259b30SLisandro Dalcin b->garray = NULL; 6870ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6871ccd8e176SBarry Smith 6872ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68730298fd71SBarry Smith b->lvec = NULL; 68740298fd71SBarry Smith b->Mvctx = NULL; 6875ccd8e176SBarry Smith 6876ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6877f4259b30SLisandro Dalcin b->rowindices = NULL; 6878f4259b30SLisandro Dalcin b->rowvalues = NULL; 6879ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6880ccd8e176SBarry Smith 6881f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68820298fd71SBarry Smith b->spptr = NULL; 6883f60c3dc2SHong Zhang 68849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 68909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68943d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 68959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 68963d0639e7SStefano Zampini #endif 6897d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6898d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6899d5e393b6SSuyash Tandon #endif 69003d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 69019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 69023d0639e7SStefano Zampini #endif 69039779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 69049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6905191b95cbSRichard Tran Mills #endif 69069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 69079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 69089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 69099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 69105d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 69119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 69125d7652ecSHong Zhang #endif 6913d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6915d24d4204SJose E. Roman #endif 69169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69183dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69213dad0653Sstefano_zampini #endif 69229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69269566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6928ccd8e176SBarry Smith } 692981824310SBarry Smith 6930cce60c4dSBarry Smith /*@C 693111a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 693203bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 693303bfb495SBarry Smith 6934d083f849SBarry Smith Collective 693503bfb495SBarry Smith 693603bfb495SBarry Smith Input Parameters: 693703bfb495SBarry Smith + comm - MPI communicator 693811a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 693903bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6940*d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 69412ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69422ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69432ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6944483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 694504ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 694603bfb495SBarry Smith . a - matrix values 6947483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69482ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 694903bfb495SBarry Smith - oa - matrix values 695003bfb495SBarry Smith 695103bfb495SBarry Smith Output Parameter: 695203bfb495SBarry Smith . mat - the matrix 695303bfb495SBarry Smith 695403bfb495SBarry Smith Level: advanced 695503bfb495SBarry Smith 695603bfb495SBarry Smith Notes: 69572ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc. The user 6958292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 695903bfb495SBarry Smith 69602ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 696103bfb495SBarry Smith 69622ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 696303bfb495SBarry Smith 69647b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69657b55108eSBarry Smith 6966dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6967dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6968dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6969dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 697011a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6971dca341c0SJed Brown communication if it is known that only local entries will be set. 697203bfb495SBarry Smith 69731cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6974db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69752b26979fSBarry Smith @*/ 6976d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6977d71ae5a4SJacob Faibussowitsch { 697803bfb495SBarry Smith Mat_MPIAIJ *maij; 697903bfb495SBarry Smith 698003bfb495SBarry Smith PetscFunctionBegin; 698108401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6982aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6983aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69849566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69859566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69869566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 698703bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69882205254eSKarl Rupp 69898d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 699003bfb495SBarry Smith 69919566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69929566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 699303bfb495SBarry Smith 69949566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 69959566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 699603bfb495SBarry Smith 69979566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 69989566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 69999566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 70009566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 70019566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 70023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 700303bfb495SBarry Smith } 700403bfb495SBarry Smith 70054e84afc0SStefano Zampini typedef struct { 70064e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 70074e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 70084e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 70094e84afc0SStefano Zampini 70104e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 70114e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 70124e84afc0SStefano Zampini PetscScalar *bufa; 70134e84afc0SStefano Zampini Mat P_oth; 70144e84afc0SStefano Zampini 70154e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7016ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70174e84afc0SStefano Zampini 7018ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70194e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70204e84afc0SStefano Zampini of the temporary storage */ 70214e84afc0SStefano Zampini PetscBool reusesym; 70224e84afc0SStefano Zampini 70234e84afc0SStefano Zampini /* support for COO values insertion */ 7024ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7025ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7026ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7027ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7028c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7029c215019aSStefano Zampini PetscMemType mtype; 70304e84afc0SStefano Zampini 70314e84afc0SStefano Zampini /* customization */ 70324e84afc0SStefano Zampini PetscBool abmerge; 7033abb89eb1SStefano Zampini PetscBool P_oth_bind; 70344e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70354e84afc0SStefano Zampini 7036ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7037d71ae5a4SJacob Faibussowitsch { 70384e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70394e84afc0SStefano Zampini PetscInt i; 70404e84afc0SStefano Zampini 70414e84afc0SStefano Zampini PetscFunctionBegin; 70429566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70439566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70449566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70459566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70469566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70479566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70489566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 704948a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70509566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70519566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70529566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70539566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70549566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70559566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70574e84afc0SStefano Zampini } 70584e84afc0SStefano Zampini 7059fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7060fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7061fff043a9SJunchao Zhang */ 7062d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7063d71ae5a4SJacob Faibussowitsch { 7064c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7065c215019aSStefano Zampini 7066c215019aSStefano Zampini PetscFunctionBegin; 70679566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7068c215019aSStefano Zampini if (f) { 70699566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7070c215019aSStefano Zampini } else { 7071c215019aSStefano Zampini const PetscScalar *vv; 7072c215019aSStefano Zampini 70739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7074c215019aSStefano Zampini if (n && idx) { 7075c215019aSStefano Zampini PetscScalar *w = v; 7076c215019aSStefano Zampini const PetscInt *oi = idx; 7077c215019aSStefano Zampini PetscInt j; 7078c215019aSStefano Zampini 7079c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7080c215019aSStefano Zampini } else { 70819566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7082c215019aSStefano Zampini } 70839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7084c215019aSStefano Zampini } 70853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7086c215019aSStefano Zampini } 7087c215019aSStefano Zampini 7088d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7089d71ae5a4SJacob Faibussowitsch { 70904e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70914e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70924e84afc0SStefano Zampini 70934e84afc0SStefano Zampini PetscFunctionBegin; 70944e84afc0SStefano Zampini MatCheckProduct(C, 1); 709528b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 70964e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 70974e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 709848a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 709948a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 71004e84afc0SStefano Zampini } 71014e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7102abb89eb1SStefano Zampini 7103abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 710408401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 71059566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7106abb89eb1SStefano Zampini } 71074e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 71084e84afc0SStefano Zampini PetscInt noff = mmdata->off[i + 1] - mmdata->off[i]; 71094e84afc0SStefano Zampini 71104e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 71114e84afc0SStefano Zampini if (noff) { 7112c215019aSStefano Zampini PetscInt nown = mmdata->own[i + 1] - mmdata->own[i]; 7113c215019aSStefano Zampini 71149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71164e84afc0SStefano Zampini n_o += noff; 71174e84afc0SStefano Zampini n_d += nown; 71184e84afc0SStefano Zampini } else { 7119c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7120c215019aSStefano Zampini 71219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71224e84afc0SStefano Zampini n_d += mm->nz; 71234e84afc0SStefano Zampini } 71244e84afc0SStefano Zampini } 7125c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71269566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71279566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71284e84afc0SStefano Zampini } 71299566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71314e84afc0SStefano Zampini } 71324e84afc0SStefano Zampini 71334e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71344e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7135d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7136d71ae5a4SJacob Faibussowitsch { 71374e84afc0SStefano Zampini Mat_Product *product = C->product; 7138ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71394e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71404e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71414e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71424e84afc0SStefano Zampini IS glob = NULL; 71434e84afc0SStefano Zampini const char *prefix; 71444e84afc0SStefano Zampini char pprefix[256]; 71454e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 714682a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 714782a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7148ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7149ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7150ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7151ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7152ddea5d60SJunchao Zhang 71534e84afc0SStefano Zampini MatProductType ptype; 7154d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71554e84afc0SStefano Zampini PetscMPIInt size; 71564e84afc0SStefano Zampini 71574e84afc0SStefano Zampini PetscFunctionBegin; 71584e84afc0SStefano Zampini MatCheckProduct(C, 1); 715928b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71604e84afc0SStefano Zampini ptype = product->type; 7161b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7162fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7163fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7164fa046f9fSJunchao Zhang } 71654e84afc0SStefano Zampini switch (ptype) { 71664e84afc0SStefano Zampini case MATPRODUCT_AB: 71674e84afc0SStefano Zampini A = product->A; 71684e84afc0SStefano Zampini P = product->B; 71694e84afc0SStefano Zampini m = A->rmap->n; 71704e84afc0SStefano Zampini n = P->cmap->n; 71714e84afc0SStefano Zampini M = A->rmap->N; 71724e84afc0SStefano Zampini N = P->cmap->N; 7173ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71744e84afc0SStefano Zampini break; 71754e84afc0SStefano Zampini case MATPRODUCT_AtB: 71764e84afc0SStefano Zampini P = product->A; 71774e84afc0SStefano Zampini A = product->B; 71784e84afc0SStefano Zampini m = P->cmap->n; 71794e84afc0SStefano Zampini n = A->cmap->n; 71804e84afc0SStefano Zampini M = P->cmap->N; 71814e84afc0SStefano Zampini N = A->cmap->N; 71824e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71834e84afc0SStefano Zampini break; 71844e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71854e84afc0SStefano Zampini A = product->A; 71864e84afc0SStefano Zampini P = product->B; 71874e84afc0SStefano Zampini m = P->cmap->n; 71884e84afc0SStefano Zampini n = P->cmap->n; 71894e84afc0SStefano Zampini M = P->cmap->N; 71904e84afc0SStefano Zampini N = P->cmap->N; 71914e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71924e84afc0SStefano Zampini break; 7193d71ae5a4SJacob Faibussowitsch default: 7194d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 71954e84afc0SStefano Zampini } 71969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 71974e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 71984e84afc0SStefano Zampini 71994e84afc0SStefano Zampini /* defaults */ 72004e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 72014e84afc0SStefano Zampini mp[i] = NULL; 72024e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 72034e84afc0SStefano Zampini rmapt[i] = -1; 72044e84afc0SStefano Zampini cmapt[i] = -1; 72054e84afc0SStefano Zampini rmapa[i] = NULL; 72064e84afc0SStefano Zampini cmapa[i] = NULL; 72074e84afc0SStefano Zampini } 72084e84afc0SStefano Zampini 72094e84afc0SStefano Zampini /* customization */ 72109566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 72114e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 72124e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72134e84afc0SStefano Zampini if (product->api_user) { 7214d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72159566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72169566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7217d0609cedSBarry Smith PetscOptionsEnd(); 72184e84afc0SStefano Zampini } else { 7219d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72209566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72219566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7222d0609cedSBarry Smith PetscOptionsEnd(); 7223abb89eb1SStefano Zampini } 7224abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7225abb89eb1SStefano Zampini if (product->api_user) { 7226d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72279566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7228d0609cedSBarry Smith PetscOptionsEnd(); 7229abb89eb1SStefano Zampini } else { 7230d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72319566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7232d0609cedSBarry Smith PetscOptionsEnd(); 72334e84afc0SStefano Zampini } 72344e84afc0SStefano Zampini } 72354e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72364e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72389566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72399566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72409566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72419566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7242ddea5d60SJunchao Zhang 7243ddea5d60SJunchao Zhang cp = 0; 72444e84afc0SStefano Zampini switch (ptype) { 72454e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72469566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72474e84afc0SStefano Zampini 7248ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7249ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72504e84afc0SStefano Zampini /* P is product->B */ 72519566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72529566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72539566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72549566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72559566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72569566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72579566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72584e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72599566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72609566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72619566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72624e84afc0SStefano Zampini rmapt[cp] = 1; 72634e84afc0SStefano Zampini cmapt[cp] = 2; 72644e84afc0SStefano Zampini cmapa[cp] = globidx; 72654e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72664e84afc0SStefano Zampini cp++; 7267ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72689566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72699566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72709566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72719566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72729566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72739566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72744e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72759566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72769566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72774e84afc0SStefano Zampini rmapt[cp] = 1; 72784e84afc0SStefano Zampini cmapt[cp] = 1; 72794e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72804e84afc0SStefano Zampini cp++; 72819566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72829566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72839566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72849566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72859566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72869566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72874e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72889566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72899566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72904e84afc0SStefano Zampini rmapt[cp] = 1; 72914e84afc0SStefano Zampini cmapt[cp] = 2; 72924e84afc0SStefano Zampini cmapa[cp] = p->garray; 72934e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72944e84afc0SStefano Zampini cp++; 72954e84afc0SStefano Zampini } 7296ddea5d60SJunchao Zhang 7297ddea5d60SJunchao Zhang /* A_off * P_other */ 72984e84afc0SStefano Zampini if (mmdata->P_oth) { 72999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 73009566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 73019566063dSJacob Faibussowitsch PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name)); 73029566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73039566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73049566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73059566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73069566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73079566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73089566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73094e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73109566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73119566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73124e84afc0SStefano Zampini rmapt[cp] = 1; 73134e84afc0SStefano Zampini cmapt[cp] = 2; 73144e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73154e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73164e84afc0SStefano Zampini cp++; 73174e84afc0SStefano Zampini } 73184e84afc0SStefano Zampini break; 7319ddea5d60SJunchao Zhang 73204e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73214e84afc0SStefano Zampini /* A is product->B */ 73229566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7323ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73249566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73259566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73269566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73279566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73289566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73299566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73304e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73319566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73329566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73339566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73344e84afc0SStefano Zampini rmapt[cp] = 2; 73354e84afc0SStefano Zampini rmapa[cp] = globidx; 73364e84afc0SStefano Zampini cmapt[cp] = 2; 73374e84afc0SStefano Zampini cmapa[cp] = globidx; 73384e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73394e84afc0SStefano Zampini cp++; 73404e84afc0SStefano Zampini } else { 73419566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73429566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73439566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73449566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73459566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73469566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73474e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73489566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73499566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73509566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73514e84afc0SStefano Zampini rmapt[cp] = 1; 73524e84afc0SStefano Zampini cmapt[cp] = 2; 73534e84afc0SStefano Zampini cmapa[cp] = globidx; 73544e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73554e84afc0SStefano Zampini cp++; 73569566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73579566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73589566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73599566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73609566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73619566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73624e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73639566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73649566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73654e84afc0SStefano Zampini rmapt[cp] = 2; 73664e84afc0SStefano Zampini rmapa[cp] = p->garray; 73674e84afc0SStefano Zampini cmapt[cp] = 2; 73684e84afc0SStefano Zampini cmapa[cp] = globidx; 73694e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73704e84afc0SStefano Zampini cp++; 73714e84afc0SStefano Zampini } 73724e84afc0SStefano Zampini break; 73734e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73749566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73754e84afc0SStefano Zampini /* P is product->B */ 73769566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73779566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73789566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73799566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73809566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73819566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73829566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73834e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73849566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73859566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73869566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73874e84afc0SStefano Zampini rmapt[cp] = 2; 73884e84afc0SStefano Zampini rmapa[cp] = globidx; 73894e84afc0SStefano Zampini cmapt[cp] = 2; 73904e84afc0SStefano Zampini cmapa[cp] = globidx; 73914e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73924e84afc0SStefano Zampini cp++; 73934e84afc0SStefano Zampini if (mmdata->P_oth) { 73949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 73959566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 73969566063dSJacob Faibussowitsch PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name)); 73979566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73989566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73999566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 74009566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74019566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74029566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74039566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74044e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74059566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74069566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74074e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 74084e84afc0SStefano Zampini cp++; 74099566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 74109566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74119566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74129566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74139566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74149566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74154e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74169566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74179566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74184e84afc0SStefano Zampini rmapt[cp] = 2; 74194e84afc0SStefano Zampini rmapa[cp] = globidx; 74204e84afc0SStefano Zampini cmapt[cp] = 2; 74214e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74224e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74234e84afc0SStefano Zampini cp++; 74244e84afc0SStefano Zampini } 74254e84afc0SStefano Zampini break; 7426d71ae5a4SJacob Faibussowitsch default: 7427d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74284e84afc0SStefano Zampini } 74294e84afc0SStefano Zampini /* sanity check */ 74309371c9d4SSatish Balay if (size > 1) 74319371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74324e84afc0SStefano Zampini 74339566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7434ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7435ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7436ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7437ddea5d60SJunchao Zhang } 74384e84afc0SStefano Zampini mmdata->cp = cp; 74394e84afc0SStefano Zampini C->product->data = mmdata; 74404e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74414e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74424e84afc0SStefano Zampini 7443c215019aSStefano Zampini /* memory type */ 7444c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74459566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7446d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74479566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7448c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7449d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74503214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7451c215019aSStefano Zampini 74524e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7453ddea5d60SJunchao Zhang 7454ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7455ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7456ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7457ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7458ddea5d60SJunchao Zhang */ 74594e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74604e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74614e84afc0SStefano Zampini if (mptmp[cp]) continue; 7462ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74634e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74644e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74654e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74664e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74674e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74684e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74694e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74704e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7471ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7472ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74734e84afc0SStefano Zampini } 74744e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74754e84afc0SStefano Zampini } 7476ddea5d60SJunchao Zhang 7477ddea5d60SJunchao Zhang /* 7478ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7479ddea5d60SJunchao Zhang 7480ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7481ddea5d60SJunchao Zhang 7482d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7483ddea5d60SJunchao Zhang 7484ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7485ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7486ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7487ddea5d60SJunchao Zhang 7488ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7489da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7490ddea5d60SJunchao Zhang */ 74919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74929566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7493ddea5d60SJunchao Zhang 7494ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7495ddea5d60SJunchao Zhang if (hasoffproc) { 74964e84afc0SStefano Zampini PetscSF msf; 74974e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 74984e84afc0SStefano Zampini 74999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 75009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 75019566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7502ddea5d60SJunchao Zhang 75034e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 75044e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75054e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 75064e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7507ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 75084e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75094e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75104e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75114e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 75124e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75134e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75144e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75154e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75164e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75174e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75184e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75194e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75204e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7521ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75224e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75234e84afc0SStefano Zampini *coi++ = gr; 75244e84afc0SStefano Zampini *idxoff++ = j; 75254e84afc0SStefano Zampini } 75264e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75274e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75284e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75294e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75304e84afc0SStefano Zampini } else { /* offdiag */ 75314e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75324e84afc0SStefano Zampini } 75334e84afc0SStefano Zampini ncoo_o += nz; 7534ddea5d60SJunchao Zhang } else { /* this is a local row */ 75354e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75364e84afc0SStefano Zampini } 75374e84afc0SStefano Zampini } 75384e84afc0SStefano Zampini } 75394e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75404e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75414e84afc0SStefano Zampini } 75424e84afc0SStefano Zampini 75439566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75449566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75459566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75469566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75474e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75489566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75499566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75509566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75519566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75529566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75539566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7554ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75559566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75564e84afc0SStefano Zampini coo_i = coo_i2; 75574e84afc0SStefano Zampini coo_j = coo_j2; 75584e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75594e84afc0SStefano Zampini ncoo = ncoo_d; 75609566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7561c215019aSStefano Zampini 75629566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75639566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75649566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75654e84afc0SStefano Zampini } 7566c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75674e84afc0SStefano Zampini 7568ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75694e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75704e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75714e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75724e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75734e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75744e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75754e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75764e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75774e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75784e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75794e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75804e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75814e84afc0SStefano Zampini 75824e84afc0SStefano Zampini if (mptmp[cp]) continue; 7583ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7584ddea5d60SJunchao Zhang /* fill coo_i */ 75854e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75864e84afc0SStefano Zampini const PetscInt gr = i + rs; 75874e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75884e84afc0SStefano Zampini } 7589ddea5d60SJunchao Zhang /* fill coo_j */ 7590ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75919566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7592ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7593ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7594ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75954e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 75964e84afc0SStefano Zampini } 75974e84afc0SStefano Zampini ncoo_d += mm->nz; 7598ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 75994e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76004e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 76014e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 76024e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7603ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 76044e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7605ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76064e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 76074e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 76084e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7609ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76104e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 76114e84afc0SStefano Zampini } 76124e84afc0SStefano Zampini ncoo_d += nz; 76134e84afc0SStefano Zampini } 76144e84afc0SStefano Zampini } 76154e84afc0SStefano Zampini } 76164e84afc0SStefano Zampini } 761748a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 761948a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76209566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7621ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76229566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76234e84afc0SStefano Zampini 76244e84afc0SStefano Zampini /* preallocate with COO data */ 76259566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76269566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76284e84afc0SStefano Zampini } 76294e84afc0SStefano Zampini 7630d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7631d71ae5a4SJacob Faibussowitsch { 76324e84afc0SStefano Zampini Mat_Product *product = mat->product; 76334e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76344e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7635abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76364e84afc0SStefano Zampini #else 76374e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76384e84afc0SStefano Zampini #endif 76394e84afc0SStefano Zampini 76404e84afc0SStefano Zampini PetscFunctionBegin; 76414e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76424e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 764348a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 764465e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7645abb89eb1SStefano Zampini switch (product->type) { 7646abb89eb1SStefano Zampini case MATPRODUCT_AB: 7647abb89eb1SStefano Zampini if (product->api_user) { 7648d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76499566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7650d0609cedSBarry Smith PetscOptionsEnd(); 7651abb89eb1SStefano Zampini } else { 7652d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76539566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7654d0609cedSBarry Smith PetscOptionsEnd(); 7655abb89eb1SStefano Zampini } 7656abb89eb1SStefano Zampini break; 7657abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7658abb89eb1SStefano Zampini if (product->api_user) { 7659d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76609566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7661d0609cedSBarry Smith PetscOptionsEnd(); 7662abb89eb1SStefano Zampini } else { 7663d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76649566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7665d0609cedSBarry Smith PetscOptionsEnd(); 7666abb89eb1SStefano Zampini } 7667abb89eb1SStefano Zampini break; 7668abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7669abb89eb1SStefano Zampini if (product->api_user) { 7670d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76719566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7672d0609cedSBarry Smith PetscOptionsEnd(); 7673abb89eb1SStefano Zampini } else { 7674d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76759566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7676d0609cedSBarry Smith PetscOptionsEnd(); 7677abb89eb1SStefano Zampini } 7678abb89eb1SStefano Zampini break; 7679d71ae5a4SJacob Faibussowitsch default: 7680d71ae5a4SJacob Faibussowitsch break; 7681abb89eb1SStefano Zampini } 7682abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7683abb89eb1SStefano Zampini } 76844e84afc0SStefano Zampini #endif 76854e84afc0SStefano Zampini if (match) { 76864e84afc0SStefano Zampini switch (product->type) { 76874e84afc0SStefano Zampini case MATPRODUCT_AB: 76884e84afc0SStefano Zampini case MATPRODUCT_AtB: 7689d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7690d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7691d71ae5a4SJacob Faibussowitsch break; 7692d71ae5a4SJacob Faibussowitsch default: 7693d71ae5a4SJacob Faibussowitsch break; 76944e84afc0SStefano Zampini } 76954e84afc0SStefano Zampini } 76964e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 76979566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 76983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 769981824310SBarry Smith } 770098921bdaSJacob Faibussowitsch 770198921bdaSJacob Faibussowitsch /* 770272833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 770372833a62Smarkadams4 770472833a62Smarkadams4 n - the number of block indices in cc[] 770572833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 770672833a62Smarkadams4 */ 7707d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7708d71ae5a4SJacob Faibussowitsch { 770972833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 771072833a62Smarkadams4 const PetscInt *idx; 771172833a62Smarkadams4 771272833a62Smarkadams4 PetscFunctionBegin; 771372833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 771472833a62Smarkadams4 if (nidx) { 771572833a62Smarkadams4 cnt = 0; 771672833a62Smarkadams4 cc[cnt] = idx[0] / bs; 771772833a62Smarkadams4 for (j = 1; j < nidx; j++) { 771872833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 771972833a62Smarkadams4 } 772072833a62Smarkadams4 } 772172833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 772272833a62Smarkadams4 *n = cnt + 1; 77233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772472833a62Smarkadams4 } 772572833a62Smarkadams4 772672833a62Smarkadams4 /* 772772833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 772872833a62Smarkadams4 772972833a62Smarkadams4 ncollapsed - the number of block indices 773072833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 773172833a62Smarkadams4 */ 7732d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7733d71ae5a4SJacob Faibussowitsch { 773472833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 773572833a62Smarkadams4 773672833a62Smarkadams4 PetscFunctionBegin; 773772833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 773872833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 773972833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 774072833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77419371c9d4SSatish Balay cprevtmp = cprev; 77429371c9d4SSatish Balay cprev = merged; 77439371c9d4SSatish Balay merged = cprevtmp; 774472833a62Smarkadams4 } 774572833a62Smarkadams4 *ncollapsed = nprev; 774672833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 774872833a62Smarkadams4 } 774972833a62Smarkadams4 77502d776b49SBarry Smith /* 775172833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 775272833a62Smarkadams4 775372833a62Smarkadams4 Input Parameter: 775472833a62Smarkadams4 . Amat - matrix 775572833a62Smarkadams4 - symmetrize - make the result symmetric 775672833a62Smarkadams4 + scale - scale with diagonal 775772833a62Smarkadams4 775872833a62Smarkadams4 Output Parameter: 775972833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 776072833a62Smarkadams4 776172833a62Smarkadams4 */ 7762e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7763d71ae5a4SJacob Faibussowitsch { 776472833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 776572833a62Smarkadams4 MPI_Comm comm; 776672833a62Smarkadams4 Mat Gmat; 776772833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 776872833a62Smarkadams4 Mat a, b, c; 776972833a62Smarkadams4 MatType jtype; 777072833a62Smarkadams4 777172833a62Smarkadams4 PetscFunctionBegin; 777272833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 777372833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 777472833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 777572833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 777672833a62Smarkadams4 nloc = (Iend - Istart) / bs; 777772833a62Smarkadams4 777872833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 777972833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 778072833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 778172833a62Smarkadams4 778272833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 778372833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 778472833a62Smarkadams4 implementation */ 778572833a62Smarkadams4 if (bs > 1) { 778672833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 778772833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 778872833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 778972833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 779072833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 779172833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 779272833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 77932cf69117Smarkadams4 MatScalar *aa, val, *AA; 77942cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 77959371c9d4SSatish Balay if (isseqaij) { 77969371c9d4SSatish Balay a = Amat; 77979371c9d4SSatish Balay b = NULL; 77989371c9d4SSatish Balay } else { 779972833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 78009371c9d4SSatish Balay a = d->A; 78019371c9d4SSatish Balay b = d->B; 780272833a62Smarkadams4 } 780372833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 780472833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 780572833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 78062cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 780759ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 780859ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 780959ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 781059ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 781159ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 781272833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 781359ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 781459ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 781559ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 781659ee9f9fSPierre Jolivet else { 781759ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 781859ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 781959ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 782072833a62Smarkadams4 } 782159ee9f9fSPierre Jolivet } 782259ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 782359ee9f9fSPierre Jolivet } 782459ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 782572833a62Smarkadams4 if (!ok) { 782672833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 782759ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 782872833a62Smarkadams4 goto old_bs; 782972833a62Smarkadams4 } 783072833a62Smarkadams4 } 783172833a62Smarkadams4 } 783272833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 783372833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 783472833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78352cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 783672833a62Smarkadams4 // diag 783772833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 783872833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 783972833a62Smarkadams4 ai = aseq->i; 784072833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 784172833a62Smarkadams4 aj = aseq->j + ai[brow]; 784272833a62Smarkadams4 for (int k = 0; k < n; k += bs) { // block columns 784372833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 784472833a62Smarkadams4 val = 0; 7845e02fb3cdSMark Adams if (index_size == 0) { 784672833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 784772833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 784872833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // columns in block 784972833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 785072833a62Smarkadams4 } 785172833a62Smarkadams4 } 7852e02fb3cdSMark Adams } else { // use (index,index) value if provided 7853e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7854e02fb3cdSMark Adams int ii = index[iii]; 7855e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 7856e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // columns in block 7857e02fb3cdSMark Adams int jj = index[jjj]; 7858cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7859e02fb3cdSMark Adams } 7860e02fb3cdSMark Adams } 7861e02fb3cdSMark Adams } 786259ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 786372833a62Smarkadams4 AA[k / bs] = val; 786472833a62Smarkadams4 } 786572833a62Smarkadams4 grow = Istart / bs + brow / bs; 786672833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, INSERT_VALUES)); 786772833a62Smarkadams4 } 786872833a62Smarkadams4 // off-diag 786972833a62Smarkadams4 if (ismpiaij) { 787072833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 787172833a62Smarkadams4 const PetscScalar *vals; 787272833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 787372833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 787472833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 787572833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 787672833a62Smarkadams4 for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 787759ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 787872833a62Smarkadams4 AA[k / bs] = 0; 787972833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 788072833a62Smarkadams4 } 788172833a62Smarkadams4 nc = ncols / bs; 788272833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7883e02fb3cdSMark Adams if (index_size == 0) { 788472833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 788572833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 788672833a62Smarkadams4 for (int k = 0; k < ncols; k += bs) { 788772833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // cols in block 788859ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 788972833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 789072833a62Smarkadams4 } 789172833a62Smarkadams4 } 789272833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 789372833a62Smarkadams4 } 7894e02fb3cdSMark Adams } else { // use (index,index) value if provided 7895e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7896e02fb3cdSMark Adams int ii = index[iii]; 7897e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 7898e02fb3cdSMark Adams for (int k = 0; k < ncols; k += bs) { 7899e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // cols in block 7900e02fb3cdSMark Adams int jj = index[jjj]; 7901e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7902e02fb3cdSMark Adams } 7903e02fb3cdSMark Adams } 7904e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7905e02fb3cdSMark Adams } 7906e02fb3cdSMark Adams } 790772833a62Smarkadams4 grow = Istart / bs + brow / bs; 790872833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, INSERT_VALUES)); 790972833a62Smarkadams4 } 791072833a62Smarkadams4 } 791172833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 791272833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79132cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 791472833a62Smarkadams4 } else { 791572833a62Smarkadams4 const PetscScalar *vals; 791672833a62Smarkadams4 const PetscInt *idx; 791772833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 791872833a62Smarkadams4 old_bs: 791972833a62Smarkadams4 /* 792072833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 792172833a62Smarkadams4 */ 792272833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 792372833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 792472833a62Smarkadams4 if (isseqaij) { 792572833a62Smarkadams4 PetscInt max_d_nnz; 792672833a62Smarkadams4 /* 792772833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 792872833a62Smarkadams4 */ 792972833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 793072833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 793172833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 793248a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 793372833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 793472833a62Smarkadams4 } else if (ismpiaij) { 793572833a62Smarkadams4 Mat Daij, Oaij; 793672833a62Smarkadams4 const PetscInt *garray; 793772833a62Smarkadams4 PetscInt max_d_nnz; 793872833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 793972833a62Smarkadams4 /* 794072833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 794172833a62Smarkadams4 */ 794272833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 794372833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 794472833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 794548a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 794672833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 794772833a62Smarkadams4 /* 794872833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 794972833a62Smarkadams4 */ 795072833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 795172833a62Smarkadams4 o_nnz[jj] = 0; 795272833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 795372833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 795472833a62Smarkadams4 o_nnz[jj] += ncols; 795572833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 795672833a62Smarkadams4 } 795772833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 795872833a62Smarkadams4 } 795972833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 796072833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 796172833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 796272833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 796372833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 796472833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 796572833a62Smarkadams4 PetscInt dest_row = Ii / bs; 796672833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 796772833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 796872833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 796972833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 797072833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 797172833a62Smarkadams4 } 797272833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 797372833a62Smarkadams4 } 797472833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 797572833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 797672833a62Smarkadams4 } 797772833a62Smarkadams4 } else { 79782d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79792d776b49SBarry Smith else { 79802d776b49SBarry Smith Gmat = Amat; 79812d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 79822d776b49SBarry Smith } 79839371c9d4SSatish Balay if (isseqaij) { 79849371c9d4SSatish Balay a = Gmat; 79859371c9d4SSatish Balay b = NULL; 79869371c9d4SSatish Balay } else { 798772833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 79889371c9d4SSatish Balay a = d->A; 79899371c9d4SSatish Balay b = d->B; 799072833a62Smarkadams4 } 79912d776b49SBarry Smith if (filter >= 0 || scale) { 79922d776b49SBarry Smith /* take absolute value of each entry */ 799372833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 799472833a62Smarkadams4 MatInfo info; 799572833a62Smarkadams4 PetscScalar *avals; 799672833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 799772833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 799872833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 799972833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 800072833a62Smarkadams4 } 800172833a62Smarkadams4 } 80022d776b49SBarry Smith } 800372833a62Smarkadams4 if (symmetrize) { 8004b94d7dedSBarry Smith PetscBool isset, issym; 8005b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8006b94d7dedSBarry Smith if (!isset || !issym) { 800772833a62Smarkadams4 Mat matTrans; 800872833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80091fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 801072833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 801172833a62Smarkadams4 } 801272833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80132d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 801472833a62Smarkadams4 if (scale) { 801572833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 801672833a62Smarkadams4 Vec diag; 801772833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 801872833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 801972833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 802072833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 802172833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 802272833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 802372833a62Smarkadams4 } 802472833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80252d776b49SBarry Smith 80262d776b49SBarry Smith if (filter >= 0) { 80272ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80282ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80292d776b49SBarry Smith } 803072833a62Smarkadams4 *a_Gmat = Gmat; 80313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 803272833a62Smarkadams4 } 803372833a62Smarkadams4 803472833a62Smarkadams4 /* 803598921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 803698921bdaSJacob Faibussowitsch */ 803798921bdaSJacob Faibussowitsch #include <petsc/private/fortranimpl.h> 803898921bdaSJacob Faibussowitsch 803998921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80409566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80419566063dSJacob Faibussowitsch #undef PetscCall 80429371c9d4SSatish Balay #define PetscCall(...) \ 80439371c9d4SSatish Balay do { \ 80445f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 804598921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 804698921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 804798921bdaSJacob Faibussowitsch return; \ 804898921bdaSJacob Faibussowitsch } \ 804998921bdaSJacob Faibussowitsch } while (0) 805098921bdaSJacob Faibussowitsch 805198921bdaSJacob Faibussowitsch #undef SETERRQ 80529371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80539371c9d4SSatish Balay do { \ 805498921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 805598921bdaSJacob Faibussowitsch return; \ 805698921bdaSJacob Faibussowitsch } while (0) 805798921bdaSJacob Faibussowitsch 805898921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 805998921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 806098921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 806198921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 806298921bdaSJacob Faibussowitsch #else 806398921bdaSJacob Faibussowitsch #endif 8064d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8065d71ae5a4SJacob Faibussowitsch { 806698921bdaSJacob Faibussowitsch Mat mat = *mmat; 806798921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 806898921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 806998921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 807098921bdaSJacob Faibussowitsch PetscScalar value; 807198921bdaSJacob Faibussowitsch 807298921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 807398921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80745f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 807598921bdaSJacob Faibussowitsch { 807698921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 807798921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 807898921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 807998921bdaSJacob Faibussowitsch 808098921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 808198921bdaSJacob Faibussowitsch Mat A = aij->A; 808298921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 808398921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 808498921bdaSJacob Faibussowitsch MatScalar *aa; 808598921bdaSJacob Faibussowitsch PetscBool ignorezeroentries = (((a->ignorezeroentries) && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 808698921bdaSJacob Faibussowitsch Mat B = aij->B; 808798921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 808898921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 808998921bdaSJacob Faibussowitsch MatScalar *ba; 809098921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 809198921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 809298921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 809398921bdaSJacob Faibussowitsch 809498921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 809598921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 809698921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 809798921bdaSJacob Faibussowitsch 809898921bdaSJacob Faibussowitsch PetscFunctionBegin; 80999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 810198921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 810298921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81036bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 810498921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 810598921bdaSJacob Faibussowitsch row = im[i] - rstart; 810698921bdaSJacob Faibussowitsch lastcol1 = -1; 810798921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 810898921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 810998921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 811098921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 811198921bdaSJacob Faibussowitsch low1 = 0; 811298921bdaSJacob Faibussowitsch high1 = nrow1; 811398921bdaSJacob Faibussowitsch lastcol2 = -1; 811498921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 811598921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 811698921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 811798921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 811898921bdaSJacob Faibussowitsch low2 = 0; 811998921bdaSJacob Faibussowitsch high2 = nrow2; 812098921bdaSJacob Faibussowitsch 812198921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 812298921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 812398921bdaSJacob Faibussowitsch else value = v[i + j * m]; 812498921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 812598921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 812698921bdaSJacob Faibussowitsch col = in[j] - cstart; 812798921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 812898921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 812998921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 813063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 813198921bdaSJacob Faibussowitsch } else { 813298921bdaSJacob Faibussowitsch if (mat->was_assembled) { 813348a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 813498921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8135eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 813698921bdaSJacob Faibussowitsch col--; 813798921bdaSJacob Faibussowitsch #else 813898921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 813998921bdaSJacob Faibussowitsch #endif 814098921bdaSJacob Faibussowitsch if (col < 0 && !((Mat_SeqAIJ *)(aij->A->data))->nonew) { 81419566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 814298921bdaSJacob Faibussowitsch col = in[j]; 814398921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 814498921bdaSJacob Faibussowitsch B = aij->B; 814598921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81469371c9d4SSatish Balay bimax = b->imax; 81479371c9d4SSatish Balay bi = b->i; 81489371c9d4SSatish Balay bilen = b->ilen; 81499371c9d4SSatish Balay bj = b->j; 815098921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 815198921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 815298921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 815398921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 815498921bdaSJacob Faibussowitsch low2 = 0; 815598921bdaSJacob Faibussowitsch high2 = nrow2; 815698921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 815798921bdaSJacob Faibussowitsch ba = b->a; 815898921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 815998921bdaSJacob Faibussowitsch } 816098921bdaSJacob Faibussowitsch } else col = in[j]; 816198921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 816298921bdaSJacob Faibussowitsch } 816398921bdaSJacob Faibussowitsch } 816498921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 816598921bdaSJacob Faibussowitsch if (roworiented) { 81669566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 816798921bdaSJacob Faibussowitsch } else { 81689566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 816998921bdaSJacob Faibussowitsch } 817098921bdaSJacob Faibussowitsch } 817198921bdaSJacob Faibussowitsch } 81729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 817498921bdaSJacob Faibussowitsch } 817598921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 817698921bdaSJacob Faibussowitsch } 817772833a62Smarkadams4 817898921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 817998921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 818098921bdaSJacob Faibussowitsch * original definitions */ 81819566063dSJacob Faibussowitsch #undef PetscCall 818298921bdaSJacob Faibussowitsch #undef SETERRQ 8183