1b57c8cebSBarry Smith 2a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER 3*db81eaa0SLois Curfman McInnes static char vcid[] = "$Id: mpiaij.c,v 1.239 1998/04/15 22:50:53 curfman Exp curfman $"; 4cb512458SBarry Smith #endif 58a729477SBarry Smith 63369ce9aSBarry Smith #include "pinclude/pviewer.h" 770f55243SBarry Smith #include "src/mat/impls/aij/mpi/mpiaij.h" 8f5eb4b81SSatish Balay #include "src/vec/vecimpl.h" 9d9942c19SSatish Balay #include "src/inline/spops.h" 108a729477SBarry Smith 119e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column 129e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 139e25ed09SBarry Smith storage of the matrix. This is done in a non scable way since the 149e25ed09SBarry Smith length of colmap equals the global matrix length. 159e25ed09SBarry Smith */ 165615d1e5SSatish Balay #undef __FUNC__ 17d4bb536fSBarry Smith #define __FUNC__ "CreateColmap_MPIAIJ_Private" 180a198c4cSBarry Smith int CreateColmap_MPIAIJ_Private(Mat mat) 199e25ed09SBarry Smith { 2044a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 21ec8511deSBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data; 22905e6a2fSBarry Smith int n = B->n,i; 23dbb450caSBarry Smith 243a40ed3dSBarry Smith PetscFunctionBegin; 25758f045eSSatish Balay aij->colmap = (int *) PetscMalloc((aij->N+1)*sizeof(int));CHKPTRQ(aij->colmap); 26464493b3SBarry Smith PLogObjectMemory(mat,aij->N*sizeof(int)); 27cddf8d76SBarry Smith PetscMemzero(aij->colmap,aij->N*sizeof(int)); 28905e6a2fSBarry Smith for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i+1; 293a40ed3dSBarry Smith PetscFunctionReturn(0); 309e25ed09SBarry Smith } 319e25ed09SBarry Smith 322493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat); 332493cbb0SBarry Smith 340520107fSSatish Balay #define CHUNKSIZE 15 3530770e4dSSatish Balay #define MatSetValues_SeqAIJ_A_Private(row,col,value,addv) \ 360520107fSSatish Balay { \ 370520107fSSatish Balay \ 380520107fSSatish Balay rp = aj + ai[row] + shift; ap = aa + ai[row] + shift; \ 3930770e4dSSatish Balay rmax = aimax[row]; nrow = ailen[row]; \ 40f5e9677aSSatish Balay col1 = col - shift; \ 41f5e9677aSSatish Balay \ 42ba4e3ef2SSatish Balay low = 0; high = nrow; \ 43ba4e3ef2SSatish Balay while (high-low > 5) { \ 44ba4e3ef2SSatish Balay t = (low+high)/2; \ 45ba4e3ef2SSatish Balay if (rp[t] > col) high = t; \ 46ba4e3ef2SSatish Balay else low = t; \ 47ba4e3ef2SSatish Balay } \ 480520107fSSatish Balay for ( _i=0; _i<nrow; _i++ ) { \ 49f5e9677aSSatish Balay if (rp[_i] > col1) break; \ 50f5e9677aSSatish Balay if (rp[_i] == col1) { \ 510520107fSSatish Balay if (addv == ADD_VALUES) ap[_i] += value; \ 520520107fSSatish Balay else ap[_i] = value; \ 5330770e4dSSatish Balay goto a_noinsert; \ 540520107fSSatish Balay } \ 550520107fSSatish Balay } \ 5689280ab3SLois Curfman McInnes if (nonew == 1) goto a_noinsert; \ 57a8c6a408SBarry Smith else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 580520107fSSatish Balay if (nrow >= rmax) { \ 590520107fSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 600520107fSSatish Balay int new_nz = ai[a->m] + CHUNKSIZE,len,*new_i,*new_j; \ 610520107fSSatish Balay Scalar *new_a; \ 620520107fSSatish Balay \ 63a8c6a408SBarry Smith if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 6489280ab3SLois Curfman McInnes \ 650520107fSSatish Balay /* malloc new storage space */ \ 660520107fSSatish Balay len = new_nz*(sizeof(int)+sizeof(Scalar))+(a->m+1)*sizeof(int); \ 670520107fSSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \ 680520107fSSatish Balay new_j = (int *) (new_a + new_nz); \ 690520107fSSatish Balay new_i = new_j + new_nz; \ 700520107fSSatish Balay \ 710520107fSSatish Balay /* copy over old data into new slots */ \ 720520107fSSatish Balay for ( ii=0; ii<row+1; ii++ ) {new_i[ii] = ai[ii];} \ 730520107fSSatish Balay for ( ii=row+1; ii<a->m+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 740520107fSSatish Balay PetscMemcpy(new_j,aj,(ai[row]+nrow+shift)*sizeof(int)); \ 750520107fSSatish Balay len = (new_nz - CHUNKSIZE - ai[row] - nrow - shift); \ 760520107fSSatish Balay PetscMemcpy(new_j+ai[row]+shift+nrow+CHUNKSIZE,aj+ai[row]+shift+nrow, \ 770520107fSSatish Balay len*sizeof(int)); \ 780520107fSSatish Balay PetscMemcpy(new_a,aa,(ai[row]+nrow+shift)*sizeof(Scalar)); \ 790520107fSSatish Balay PetscMemcpy(new_a+ai[row]+shift+nrow+CHUNKSIZE,aa+ai[row]+shift+nrow, \ 800520107fSSatish Balay len*sizeof(Scalar)); \ 810520107fSSatish Balay /* free up old matrix storage */ \ 82f5e9677aSSatish Balay \ 830520107fSSatish Balay PetscFree(a->a); \ 840520107fSSatish Balay if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} \ 850520107fSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 860520107fSSatish Balay a->singlemalloc = 1; \ 870520107fSSatish Balay \ 880520107fSSatish Balay rp = aj + ai[row] + shift; ap = aa + ai[row] + shift; \ 8930770e4dSSatish Balay rmax = aimax[row] = aimax[row] + CHUNKSIZE; \ 900520107fSSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + sizeof(Scalar))); \ 910520107fSSatish Balay a->maxnz += CHUNKSIZE; \ 920520107fSSatish Balay a->reallocs++; \ 930520107fSSatish Balay } \ 940520107fSSatish Balay N = nrow++ - 1; a->nz++; \ 950520107fSSatish Balay /* shift up all the later entries in this row */ \ 960520107fSSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 970520107fSSatish Balay rp[ii+1] = rp[ii]; \ 980520107fSSatish Balay ap[ii+1] = ap[ii]; \ 990520107fSSatish Balay } \ 100f5e9677aSSatish Balay rp[_i] = col1; \ 1010520107fSSatish Balay ap[_i] = value; \ 10230770e4dSSatish Balay a_noinsert: ; \ 1030520107fSSatish Balay ailen[row] = nrow; \ 1040520107fSSatish Balay } 1050a198c4cSBarry Smith 10630770e4dSSatish Balay #define MatSetValues_SeqAIJ_B_Private(row,col,value,addv) \ 10730770e4dSSatish Balay { \ 10830770e4dSSatish Balay \ 10930770e4dSSatish Balay rp = bj + bi[row] + shift; ap = ba + bi[row] + shift; \ 11030770e4dSSatish Balay rmax = bimax[row]; nrow = bilen[row]; \ 11130770e4dSSatish Balay col1 = col - shift; \ 11230770e4dSSatish Balay \ 113ba4e3ef2SSatish Balay low = 0; high = nrow; \ 114ba4e3ef2SSatish Balay while (high-low > 5) { \ 115ba4e3ef2SSatish Balay t = (low+high)/2; \ 116ba4e3ef2SSatish Balay if (rp[t] > col) high = t; \ 117ba4e3ef2SSatish Balay else low = t; \ 118ba4e3ef2SSatish Balay } \ 11930770e4dSSatish Balay for ( _i=0; _i<nrow; _i++ ) { \ 12030770e4dSSatish Balay if (rp[_i] > col1) break; \ 12130770e4dSSatish Balay if (rp[_i] == col1) { \ 12230770e4dSSatish Balay if (addv == ADD_VALUES) ap[_i] += value; \ 12330770e4dSSatish Balay else ap[_i] = value; \ 12430770e4dSSatish Balay goto b_noinsert; \ 12530770e4dSSatish Balay } \ 12630770e4dSSatish Balay } \ 12789280ab3SLois Curfman McInnes if (nonew == 1) goto b_noinsert; \ 128a8c6a408SBarry Smith else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 12930770e4dSSatish Balay if (nrow >= rmax) { \ 13030770e4dSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 13174c639caSSatish Balay int new_nz = bi[b->m] + CHUNKSIZE,len,*new_i,*new_j; \ 13230770e4dSSatish Balay Scalar *new_a; \ 13330770e4dSSatish Balay \ 134a8c6a408SBarry Smith if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 13589280ab3SLois Curfman McInnes \ 13630770e4dSSatish Balay /* malloc new storage space */ \ 13774c639caSSatish Balay len = new_nz*(sizeof(int)+sizeof(Scalar))+(b->m+1)*sizeof(int); \ 13830770e4dSSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \ 13930770e4dSSatish Balay new_j = (int *) (new_a + new_nz); \ 14030770e4dSSatish Balay new_i = new_j + new_nz; \ 14130770e4dSSatish Balay \ 14230770e4dSSatish Balay /* copy over old data into new slots */ \ 14330770e4dSSatish Balay for ( ii=0; ii<row+1; ii++ ) {new_i[ii] = bi[ii];} \ 14474c639caSSatish Balay for ( ii=row+1; ii<b->m+1; ii++ ) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 14530770e4dSSatish Balay PetscMemcpy(new_j,bj,(bi[row]+nrow+shift)*sizeof(int)); \ 14630770e4dSSatish Balay len = (new_nz - CHUNKSIZE - bi[row] - nrow - shift); \ 14730770e4dSSatish Balay PetscMemcpy(new_j+bi[row]+shift+nrow+CHUNKSIZE,bj+bi[row]+shift+nrow, \ 14830770e4dSSatish Balay len*sizeof(int)); \ 14930770e4dSSatish Balay PetscMemcpy(new_a,ba,(bi[row]+nrow+shift)*sizeof(Scalar)); \ 15030770e4dSSatish Balay PetscMemcpy(new_a+bi[row]+shift+nrow+CHUNKSIZE,ba+bi[row]+shift+nrow, \ 15130770e4dSSatish Balay len*sizeof(Scalar)); \ 15230770e4dSSatish Balay /* free up old matrix storage */ \ 15330770e4dSSatish Balay \ 15474c639caSSatish Balay PetscFree(b->a); \ 15574c639caSSatish Balay if (!b->singlemalloc) {PetscFree(b->i);PetscFree(b->j);} \ 15674c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 15774c639caSSatish Balay b->singlemalloc = 1; \ 15830770e4dSSatish Balay \ 15930770e4dSSatish Balay rp = bj + bi[row] + shift; ap = ba + bi[row] + shift; \ 16030770e4dSSatish Balay rmax = bimax[row] = bimax[row] + CHUNKSIZE; \ 16174c639caSSatish Balay PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + sizeof(Scalar))); \ 16274c639caSSatish Balay b->maxnz += CHUNKSIZE; \ 16374c639caSSatish Balay b->reallocs++; \ 16430770e4dSSatish Balay } \ 16574c639caSSatish Balay N = nrow++ - 1; b->nz++; \ 16630770e4dSSatish Balay /* shift up all the later entries in this row */ \ 16730770e4dSSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 16830770e4dSSatish Balay rp[ii+1] = rp[ii]; \ 16930770e4dSSatish Balay ap[ii+1] = ap[ii]; \ 17030770e4dSSatish Balay } \ 17130770e4dSSatish Balay rp[_i] = col1; \ 17230770e4dSSatish Balay ap[_i] = value; \ 17330770e4dSSatish Balay b_noinsert: ; \ 17430770e4dSSatish Balay bilen[row] = nrow; \ 17530770e4dSSatish Balay } 17630770e4dSSatish Balay 1770520107fSSatish Balay extern int MatSetValues_SeqAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 1785615d1e5SSatish Balay #undef __FUNC__ 1795615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIAIJ" 1808f6be9afSLois Curfman McInnes int MatSetValues_MPIAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 1818a729477SBarry Smith { 18244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1834b0e389bSBarry Smith Scalar value; 1841eb62cbbSBarry Smith int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 1851eb62cbbSBarry Smith int cstart = aij->cstart, cend = aij->cend,row,col; 186905e6a2fSBarry Smith int roworiented = aij->roworiented; 1878a729477SBarry Smith 1880520107fSSatish Balay /* Some Variables required in the macro */ 1894ee7247eSSatish Balay Mat A = aij->A; 1904ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *) A->data; 19130770e4dSSatish Balay int *aimax = a->imax, *ai = a->i, *ailen = a->ilen,*aj = a->j; 19230770e4dSSatish Balay Scalar *aa = a->a; 19330770e4dSSatish Balay 19430770e4dSSatish Balay Mat B = aij->B; 19530770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *) B->data; 19630770e4dSSatish Balay int *bimax = b->imax, *bi = b->i, *bilen = b->ilen,*bj = b->j; 19730770e4dSSatish Balay Scalar *ba = b->a; 19830770e4dSSatish Balay 199ba4e3ef2SSatish Balay int *rp,ii,nrow,_i,rmax, N, col1,low,high,t; 20030770e4dSSatish Balay int nonew = a->nonew,shift = a->indexshift; 20130770e4dSSatish Balay Scalar *ap; 2024ee7247eSSatish Balay 2033a40ed3dSBarry Smith PetscFunctionBegin; 2048a729477SBarry Smith for ( i=0; i<m; i++ ) { 2053a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 206a8c6a408SBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 207a8c6a408SBarry Smith if (im[i] >= aij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 2080a198c4cSBarry Smith #endif 2094b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 2104b0e389bSBarry Smith row = im[i] - rstart; 2111eb62cbbSBarry Smith for ( j=0; j<n; j++ ) { 2124b0e389bSBarry Smith if (in[j] >= cstart && in[j] < cend){ 2134b0e389bSBarry Smith col = in[j] - cstart; 2144b0e389bSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 21530770e4dSSatish Balay MatSetValues_SeqAIJ_A_Private(row,col,value,addv); 2160520107fSSatish Balay /* ierr = MatSetValues_SeqAIJ(aij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 2171eb62cbbSBarry Smith } 2183a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 219a8c6a408SBarry Smith else if (in[j] < 0) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");} 220a8c6a408SBarry Smith else if (in[j] >= aij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");} 2210a198c4cSBarry Smith #endif 2221eb62cbbSBarry Smith else { 223227d817aSBarry Smith if (mat->was_assembled) { 224905e6a2fSBarry Smith if (!aij->colmap) { 225905e6a2fSBarry Smith ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr); 226905e6a2fSBarry Smith } 227905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 228ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 2292493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2304b0e389bSBarry Smith col = in[j]; 2319bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 232f9508a3cSSatish Balay B = aij->B; 233f9508a3cSSatish Balay b = (Mat_SeqAIJ *) B->data; 234f9508a3cSSatish Balay bimax = b->imax; bi = b->i; bilen = b->ilen; bj = b->j; 235f9508a3cSSatish Balay ba = b->a; 236d6dfbf8fSBarry Smith } 237c48de900SBarry Smith } else col = in[j]; 2384b0e389bSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 23930770e4dSSatish Balay MatSetValues_SeqAIJ_B_Private(row,col,value,addv); 24030770e4dSSatish Balay /* ierr = MatSetValues_SeqAIJ(aij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 2411eb62cbbSBarry Smith } 2421eb62cbbSBarry Smith } 2431eb62cbbSBarry Smith } 2441eb62cbbSBarry Smith else { 24590f02eecSBarry Smith if (roworiented && !aij->donotstash) { 2464b0e389bSBarry Smith ierr = StashValues_Private(&aij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 2474b0e389bSBarry Smith } 2484b0e389bSBarry Smith else { 24990f02eecSBarry Smith if (!aij->donotstash) { 2504b0e389bSBarry Smith row = im[i]; 2514b0e389bSBarry Smith for ( j=0; j<n; j++ ) { 2524b0e389bSBarry Smith ierr = StashValues_Private(&aij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 2534b0e389bSBarry Smith } 2544b0e389bSBarry Smith } 2551eb62cbbSBarry Smith } 2568a729477SBarry Smith } 25790f02eecSBarry Smith } 2583a40ed3dSBarry Smith PetscFunctionReturn(0); 2598a729477SBarry Smith } 2608a729477SBarry Smith 2615615d1e5SSatish Balay #undef __FUNC__ 2625615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIAIJ" 2638f6be9afSLois Curfman McInnes int MatGetValues_MPIAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 264b49de8d1SLois Curfman McInnes { 265b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 266b49de8d1SLois Curfman McInnes int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 267b49de8d1SLois Curfman McInnes int cstart = aij->cstart, cend = aij->cend,row,col; 268b49de8d1SLois Curfman McInnes 2693a40ed3dSBarry Smith PetscFunctionBegin; 270b49de8d1SLois Curfman McInnes for ( i=0; i<m; i++ ) { 271a8c6a408SBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 272a8c6a408SBarry Smith if (idxm[i] >= aij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 273b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 274b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 275b49de8d1SLois Curfman McInnes for ( j=0; j<n; j++ ) { 276a8c6a408SBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 277a8c6a408SBarry Smith if (idxn[j] >= aij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 278b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend){ 279b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 280b49de8d1SLois Curfman McInnes ierr = MatGetValues(aij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 281b49de8d1SLois Curfman McInnes } 282b49de8d1SLois Curfman McInnes else { 283905e6a2fSBarry Smith if (!aij->colmap) { 284905e6a2fSBarry Smith ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr); 285905e6a2fSBarry Smith } 286905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 287e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v+i*n+j) = 0.0; 288d9d09a02SSatish Balay else { 289b49de8d1SLois Curfman McInnes ierr = MatGetValues(aij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 290b49de8d1SLois Curfman McInnes } 291b49de8d1SLois Curfman McInnes } 292b49de8d1SLois Curfman McInnes } 293a8c6a408SBarry Smith } else { 294a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported"); 295b49de8d1SLois Curfman McInnes } 296b49de8d1SLois Curfman McInnes } 2973a40ed3dSBarry Smith PetscFunctionReturn(0); 298b49de8d1SLois Curfman McInnes } 299b49de8d1SLois Curfman McInnes 3005615d1e5SSatish Balay #undef __FUNC__ 3015615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIAIJ" 3028f6be9afSLois Curfman McInnes int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode) 3038a729477SBarry Smith { 30444a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 305d6dfbf8fSBarry Smith MPI_Comm comm = mat->comm; 30617699dbbSLois Curfman McInnes int size = aij->size, *owners = aij->rowners; 30717699dbbSLois Curfman McInnes int rank = aij->rank,tag = mat->tag, *owner,*starts,count,ierr; 3081eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 3096abc6512SBarry Smith int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 3101eb62cbbSBarry Smith InsertMode addv; 3111eb62cbbSBarry Smith Scalar *rvalues,*svalues; 3121eb62cbbSBarry Smith 3133a40ed3dSBarry Smith PetscFunctionBegin; 3141eb62cbbSBarry Smith /* make sure all processors are either in INSERTMODE or ADDMODE */ 315ca161407SBarry Smith ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 316dbb450caSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 317a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added"); 3181eb62cbbSBarry Smith } 31947794344SBarry Smith mat->insertmode = addv; /* in case this processor had no cache */ 3201eb62cbbSBarry Smith 3211eb62cbbSBarry Smith /* first count number of contributors to each processor */ 3220452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 323cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 3240452661fSBarry Smith owner = (int *) PetscMalloc( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 3251eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 3261eb62cbbSBarry Smith idx = aij->stash.idx[i]; 32717699dbbSLois Curfman McInnes for ( j=0; j<size; j++ ) { 3281eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 3291eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; break; 3308a729477SBarry Smith } 3318a729477SBarry Smith } 3328a729477SBarry Smith } 33317699dbbSLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 3341eb62cbbSBarry Smith 3351eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 3360452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 337ca161407SBarry Smith ierr = MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 33817699dbbSLois Curfman McInnes nreceives = work[rank]; 339ca161407SBarry Smith ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 34017699dbbSLois Curfman McInnes nmax = work[rank]; 3410452661fSBarry Smith PetscFree(work); 3421eb62cbbSBarry Smith 3431eb62cbbSBarry Smith /* post receives: 3441eb62cbbSBarry Smith 1) each message will consist of ordered pairs 3451eb62cbbSBarry Smith (global index,value) we store the global index as a double 346d6dfbf8fSBarry Smith to simplify the message passing. 3471eb62cbbSBarry Smith 2) since we don't know how long each individual message is we 3481eb62cbbSBarry Smith allocate the largest needed buffer for each receive. Potentially 3491eb62cbbSBarry Smith this is a lot of wasted space. 3501eb62cbbSBarry Smith 3511eb62cbbSBarry Smith 3521eb62cbbSBarry Smith This could be done better. 3531eb62cbbSBarry Smith */ 354ca161407SBarry Smith rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues); 355ca161407SBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 3561eb62cbbSBarry Smith for ( i=0; i<nreceives; i++ ) { 357ca161407SBarry Smith ierr = MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 358ca161407SBarry Smith comm,recv_waits+i);CHKERRQ(ierr); 3591eb62cbbSBarry Smith } 3601eb62cbbSBarry Smith 3611eb62cbbSBarry Smith /* do sends: 3621eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 3631eb62cbbSBarry Smith the ith processor 3641eb62cbbSBarry Smith */ 3650452661fSBarry Smith svalues = (Scalar *) PetscMalloc(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 366ca161407SBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 3670452661fSBarry Smith starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 3681eb62cbbSBarry Smith starts[0] = 0; 36917699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3701eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 3711eb62cbbSBarry Smith svalues[3*starts[owner[i]]] = (Scalar) aij->stash.idx[i]; 3721eb62cbbSBarry Smith svalues[3*starts[owner[i]]+1] = (Scalar) aij->stash.idy[i]; 3731eb62cbbSBarry Smith svalues[3*(starts[owner[i]]++)+2] = aij->stash.array[i]; 3741eb62cbbSBarry Smith } 3750452661fSBarry Smith PetscFree(owner); 3761eb62cbbSBarry Smith starts[0] = 0; 37717699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3781eb62cbbSBarry Smith count = 0; 37917699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 3801eb62cbbSBarry Smith if (procs[i]) { 381ca161407SBarry Smith ierr = MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3821eb62cbbSBarry Smith } 3831eb62cbbSBarry Smith } 3840452661fSBarry Smith PetscFree(starts); PetscFree(nprocs); 3851eb62cbbSBarry Smith 3861eb62cbbSBarry Smith /* Free cache space */ 38755908cccSLois Curfman McInnes PLogInfo(mat,"MatAssemblyBegin_MPIAIJ:Number of off-processor values %d\n",aij->stash.n); 38878b31e54SBarry Smith ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr); 3891eb62cbbSBarry Smith 3901eb62cbbSBarry Smith aij->svalues = svalues; aij->rvalues = rvalues; 3911eb62cbbSBarry Smith aij->nsends = nsends; aij->nrecvs = nreceives; 3921eb62cbbSBarry Smith aij->send_waits = send_waits; aij->recv_waits = recv_waits; 3931eb62cbbSBarry Smith aij->rmax = nmax; 3941eb62cbbSBarry Smith 3953a40ed3dSBarry Smith PetscFunctionReturn(0); 3961eb62cbbSBarry Smith } 39744a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat); 3981eb62cbbSBarry Smith 3995615d1e5SSatish Balay #undef __FUNC__ 4005615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIAIJ" 4018f6be9afSLois Curfman McInnes int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode) 4021eb62cbbSBarry Smith { 40344a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 4041eb62cbbSBarry Smith MPI_Status *send_status,recv_status; 405416022c9SBarry Smith int imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr; 406905e6a2fSBarry Smith int row,col,other_disassembled; 4071eb62cbbSBarry Smith Scalar *values,val; 40847794344SBarry Smith InsertMode addv = mat->insertmode; 4091eb62cbbSBarry Smith 4103a40ed3dSBarry Smith PetscFunctionBegin; 4111eb62cbbSBarry Smith /* wait on receives */ 4121eb62cbbSBarry Smith while (count) { 413ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4141eb62cbbSBarry Smith /* unpack receives into our local space */ 415d6dfbf8fSBarry Smith values = aij->rvalues + 3*imdex*aij->rmax; 416ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,&n);CHKERRQ(ierr); 4171eb62cbbSBarry Smith n = n/3; 4181eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 419227d817aSBarry Smith row = (int) PetscReal(values[3*i]) - aij->rstart; 420227d817aSBarry Smith col = (int) PetscReal(values[3*i+1]); 4211eb62cbbSBarry Smith val = values[3*i+2]; 4221eb62cbbSBarry Smith if (col >= aij->cstart && col < aij->cend) { 4231eb62cbbSBarry Smith col -= aij->cstart; 4246fd7127cSSatish Balay ierr = MatSetValues(aij->A,1,&row,1,&col,&val,addv); CHKERRQ(ierr); 4253a40ed3dSBarry Smith } else { 42655a1b374SBarry Smith if (mat->was_assembled || mat->assembled) { 427905e6a2fSBarry Smith if (!aij->colmap) { 428905e6a2fSBarry Smith ierr = CreateColmap_MPIAIJ_Private(mat); CHKERRQ(ierr); 429905e6a2fSBarry Smith } 430905e6a2fSBarry Smith col = aij->colmap[col] - 1; 431ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 4322493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 433227d817aSBarry Smith col = (int) PetscReal(values[3*i+1]); 434d6dfbf8fSBarry Smith } 4359e25ed09SBarry Smith } 4366fd7127cSSatish Balay ierr = MatSetValues(aij->B,1,&row,1,&col,&val,addv); CHKERRQ(ierr); 4371eb62cbbSBarry Smith } 4381eb62cbbSBarry Smith } 4391eb62cbbSBarry Smith count--; 4401eb62cbbSBarry Smith } 4410452661fSBarry Smith PetscFree(aij->recv_waits); PetscFree(aij->rvalues); 4421eb62cbbSBarry Smith 4431eb62cbbSBarry Smith /* wait on sends */ 4441eb62cbbSBarry Smith if (aij->nsends) { 4450a198c4cSBarry Smith send_status = (MPI_Status *) PetscMalloc(aij->nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 446ca161407SBarry Smith ierr = MPI_Waitall(aij->nsends,aij->send_waits,send_status);CHKERRQ(ierr); 4470452661fSBarry Smith PetscFree(send_status); 4481eb62cbbSBarry Smith } 4490452661fSBarry Smith PetscFree(aij->send_waits); PetscFree(aij->svalues); 4501eb62cbbSBarry Smith 45178b31e54SBarry Smith ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr); 45278b31e54SBarry Smith ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr); 4531eb62cbbSBarry Smith 4542493cbb0SBarry Smith /* determine if any processor has disassembled, if so we must 4552493cbb0SBarry Smith also disassemble ourselfs, in order that we may reassemble. */ 456ca161407SBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 457227d817aSBarry Smith if (mat->was_assembled && !other_disassembled) { 4582493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 4592493cbb0SBarry Smith } 4602493cbb0SBarry Smith 4616d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 46278b31e54SBarry Smith ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr); 4635e42470aSBarry Smith } 46478b31e54SBarry Smith ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr); 46578b31e54SBarry Smith ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr); 4665e42470aSBarry Smith 4677a0afa10SBarry Smith if (aij->rowvalues) {PetscFree(aij->rowvalues); aij->rowvalues = 0;} 4683a40ed3dSBarry Smith PetscFunctionReturn(0); 4698a729477SBarry Smith } 4708a729477SBarry Smith 4715615d1e5SSatish Balay #undef __FUNC__ 4725615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIAIJ" 4738f6be9afSLois Curfman McInnes int MatZeroEntries_MPIAIJ(Mat A) 4741eb62cbbSBarry Smith { 47544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 476dbd7a890SLois Curfman McInnes int ierr; 4773a40ed3dSBarry Smith 4783a40ed3dSBarry Smith PetscFunctionBegin; 47978b31e54SBarry Smith ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 48078b31e54SBarry Smith ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 4813a40ed3dSBarry Smith PetscFunctionReturn(0); 4821eb62cbbSBarry Smith } 4831eb62cbbSBarry Smith 4845615d1e5SSatish Balay #undef __FUNC__ 4855615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIAIJ" 4868f6be9afSLois Curfman McInnes int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag) 4871eb62cbbSBarry Smith { 48844a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 48917699dbbSLois Curfman McInnes int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 4906a5c57faSSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work,row; 49117699dbbSLois Curfman McInnes int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 4925392566eSBarry Smith int *rvalues,tag = A->tag,count,base,slen,n,*source; 4936a5c57faSSatish Balay int *lens,imdex,*lrows,*values,rstart=l->rstart; 494d6dfbf8fSBarry Smith MPI_Comm comm = A->comm; 4951eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 4961eb62cbbSBarry Smith MPI_Status recv_status,*send_status; 4971eb62cbbSBarry Smith IS istmp; 4981eb62cbbSBarry Smith 4993a40ed3dSBarry Smith PetscFunctionBegin; 50077c4ece6SBarry Smith ierr = ISGetSize(is,&N); CHKERRQ(ierr); 50178b31e54SBarry Smith ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 5021eb62cbbSBarry Smith 5031eb62cbbSBarry Smith /* first count number of contributors to each processor */ 5040452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 505cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 5060452661fSBarry Smith owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 5071eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 5081eb62cbbSBarry Smith idx = rows[i]; 5091eb62cbbSBarry Smith found = 0; 51017699dbbSLois Curfman McInnes for ( j=0; j<size; j++ ) { 5111eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 5121eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 5131eb62cbbSBarry Smith } 5141eb62cbbSBarry Smith } 515a8c6a408SBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range"); 5161eb62cbbSBarry Smith } 51717699dbbSLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 5181eb62cbbSBarry Smith 5191eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 5200452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 521ca161407SBarry Smith ierr = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 52217699dbbSLois Curfman McInnes nrecvs = work[rank]; 523ca161407SBarry Smith ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 52417699dbbSLois Curfman McInnes nmax = work[rank]; 5250452661fSBarry Smith PetscFree(work); 5261eb62cbbSBarry Smith 5271eb62cbbSBarry Smith /* post receives: */ 5283a40ed3dSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues); 529ca161407SBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 5301eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 531ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 5321eb62cbbSBarry Smith } 5331eb62cbbSBarry Smith 5341eb62cbbSBarry Smith /* do sends: 5351eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 5361eb62cbbSBarry Smith the ith processor 5371eb62cbbSBarry Smith */ 5380452661fSBarry Smith svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 5393a40ed3dSBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 5400452661fSBarry Smith starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 5411eb62cbbSBarry Smith starts[0] = 0; 54217699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 5431eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 5441eb62cbbSBarry Smith svalues[starts[owner[i]]++] = rows[i]; 5451eb62cbbSBarry Smith } 5461eb62cbbSBarry Smith ISRestoreIndices(is,&rows); 5471eb62cbbSBarry Smith 5481eb62cbbSBarry Smith starts[0] = 0; 54917699dbbSLois Curfman McInnes for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 5501eb62cbbSBarry Smith count = 0; 55117699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 5521eb62cbbSBarry Smith if (procs[i]) { 553ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 5541eb62cbbSBarry Smith } 5551eb62cbbSBarry Smith } 5560452661fSBarry Smith PetscFree(starts); 5571eb62cbbSBarry Smith 55817699dbbSLois Curfman McInnes base = owners[rank]; 5591eb62cbbSBarry Smith 5601eb62cbbSBarry Smith /* wait on receives */ 5610452661fSBarry Smith lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 5621eb62cbbSBarry Smith source = lens + nrecvs; 5631eb62cbbSBarry Smith count = nrecvs; slen = 0; 5641eb62cbbSBarry Smith while (count) { 565ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 5661eb62cbbSBarry Smith /* unpack receives into our local space */ 567ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 568d6dfbf8fSBarry Smith source[imdex] = recv_status.MPI_SOURCE; 569d6dfbf8fSBarry Smith lens[imdex] = n; 5701eb62cbbSBarry Smith slen += n; 5711eb62cbbSBarry Smith count--; 5721eb62cbbSBarry Smith } 5730452661fSBarry Smith PetscFree(recv_waits); 5741eb62cbbSBarry Smith 5751eb62cbbSBarry Smith /* move the data into the send scatter */ 5760452661fSBarry Smith lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 5771eb62cbbSBarry Smith count = 0; 5781eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 5791eb62cbbSBarry Smith values = rvalues + i*nmax; 5801eb62cbbSBarry Smith for ( j=0; j<lens[i]; j++ ) { 5811eb62cbbSBarry Smith lrows[count++] = values[j] - base; 5821eb62cbbSBarry Smith } 5831eb62cbbSBarry Smith } 5840452661fSBarry Smith PetscFree(rvalues); PetscFree(lens); 5850452661fSBarry Smith PetscFree(owner); PetscFree(nprocs); 5861eb62cbbSBarry Smith 5871eb62cbbSBarry Smith /* actually zap the local rows */ 588029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 589464493b3SBarry Smith PLogObjectParent(A,istmp); 5906a5c57faSSatish Balay 5916a5c57faSSatish Balay ierr = MatZeroRows(l->A,istmp,0); CHKERRQ(ierr); 59278b31e54SBarry Smith ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 59378b31e54SBarry Smith ierr = ISDestroy(istmp); CHKERRQ(ierr); 5941eb62cbbSBarry Smith 5956a5c57faSSatish Balay if (diag) { 5966a5c57faSSatish Balay for ( i = 0; i < slen; i++ ) { 5976a5c57faSSatish Balay row = lrows[i] + rstart; 5986a5c57faSSatish Balay MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES); 5996a5c57faSSatish Balay } 6006a5c57faSSatish Balay MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); 6016a5c57faSSatish Balay MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); 6026a5c57faSSatish Balay } 6036a5c57faSSatish Balay PetscFree(lrows); 6041eb62cbbSBarry Smith /* wait on sends */ 6051eb62cbbSBarry Smith if (nsends) { 606ca161407SBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 607ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 6080452661fSBarry Smith PetscFree(send_status); 6091eb62cbbSBarry Smith } 6100452661fSBarry Smith PetscFree(send_waits); PetscFree(svalues); 6111eb62cbbSBarry Smith 6123a40ed3dSBarry Smith PetscFunctionReturn(0); 6131eb62cbbSBarry Smith } 6141eb62cbbSBarry Smith 6155615d1e5SSatish Balay #undef __FUNC__ 6165615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIAIJ" 6178f6be9afSLois Curfman McInnes int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy) 6181eb62cbbSBarry Smith { 619416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 620fbd6ef76SBarry Smith int ierr,nt; 621416022c9SBarry Smith 6223a40ed3dSBarry Smith PetscFunctionBegin; 623a2ce50c7SBarry Smith ierr = VecGetLocalSize(xx,&nt); CHKERRQ(ierr); 624fbd6ef76SBarry Smith if (nt != a->n) { 625a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx"); 626fbd6ef76SBarry Smith } 62743a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx); CHKERRQ(ierr); 628f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy); CHKERRQ(ierr); 62943a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx); CHKERRQ(ierr); 630f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 6313a40ed3dSBarry Smith PetscFunctionReturn(0); 6321eb62cbbSBarry Smith } 6331eb62cbbSBarry Smith 6345615d1e5SSatish Balay #undef __FUNC__ 6355615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIAIJ" 6368f6be9afSLois Curfman McInnes int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 637da3a660dSBarry Smith { 638416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 639da3a660dSBarry Smith int ierr; 6403a40ed3dSBarry Smith 6413a40ed3dSBarry Smith PetscFunctionBegin; 64243a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 643f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 64443a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 645f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 6463a40ed3dSBarry Smith PetscFunctionReturn(0); 647da3a660dSBarry Smith } 648da3a660dSBarry Smith 6495615d1e5SSatish Balay #undef __FUNC__ 6505615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIAIJ" 6518f6be9afSLois Curfman McInnes int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy) 652da3a660dSBarry Smith { 653416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 654da3a660dSBarry Smith int ierr; 655da3a660dSBarry Smith 6563a40ed3dSBarry Smith PetscFunctionBegin; 657da3a660dSBarry Smith /* do nondiagonal part */ 658f830108cSBarry Smith ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 659da3a660dSBarry Smith /* send it on its way */ 660537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 661da3a660dSBarry Smith /* do local part */ 662f830108cSBarry Smith ierr = (*a->A->ops->multtrans)(a->A,xx,yy); CHKERRQ(ierr); 663da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 664da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 665da3a660dSBarry Smith /* but is not perhaps always true. */ 666537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 6673a40ed3dSBarry Smith PetscFunctionReturn(0); 668da3a660dSBarry Smith } 669da3a660dSBarry Smith 6705615d1e5SSatish Balay #undef __FUNC__ 6715615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIAIJ" 6728f6be9afSLois Curfman McInnes int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 673da3a660dSBarry Smith { 674416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 675da3a660dSBarry Smith int ierr; 676da3a660dSBarry Smith 6773a40ed3dSBarry Smith PetscFunctionBegin; 678da3a660dSBarry Smith /* do nondiagonal part */ 679f830108cSBarry Smith ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 680da3a660dSBarry Smith /* send it on its way */ 681537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 682da3a660dSBarry Smith /* do local part */ 683f830108cSBarry Smith ierr = (*a->A->ops->multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 684da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 685da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 686da3a660dSBarry Smith /* but is not perhaps always true. */ 6870a198c4cSBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 6883a40ed3dSBarry Smith PetscFunctionReturn(0); 689da3a660dSBarry Smith } 690da3a660dSBarry Smith 6911eb62cbbSBarry Smith /* 6921eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 6931eb62cbbSBarry Smith diagonal block 6941eb62cbbSBarry Smith */ 6955615d1e5SSatish Balay #undef __FUNC__ 6965615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIAIJ" 6978f6be9afSLois Curfman McInnes int MatGetDiagonal_MPIAIJ(Mat A,Vec v) 6981eb62cbbSBarry Smith { 6993a40ed3dSBarry Smith int ierr; 700416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 7013a40ed3dSBarry Smith 7023a40ed3dSBarry Smith PetscFunctionBegin; 703a8c6a408SBarry Smith if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block"); 7045baf8537SBarry Smith if (a->rstart != a->cstart || a->rend != a->cend) { 705a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"row partition must equal col partition"); 7063a40ed3dSBarry Smith } 7073a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 7083a40ed3dSBarry Smith PetscFunctionReturn(0); 7091eb62cbbSBarry Smith } 7101eb62cbbSBarry Smith 7115615d1e5SSatish Balay #undef __FUNC__ 7125615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIAIJ" 7138f6be9afSLois Curfman McInnes int MatScale_MPIAIJ(Scalar *aa,Mat A) 714052efed2SBarry Smith { 715052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 716052efed2SBarry Smith int ierr; 7173a40ed3dSBarry Smith 7183a40ed3dSBarry Smith PetscFunctionBegin; 719052efed2SBarry Smith ierr = MatScale(aa,a->A); CHKERRQ(ierr); 720052efed2SBarry Smith ierr = MatScale(aa,a->B); CHKERRQ(ierr); 7213a40ed3dSBarry Smith PetscFunctionReturn(0); 722052efed2SBarry Smith } 723052efed2SBarry Smith 7245615d1e5SSatish Balay #undef __FUNC__ 725d4bb536fSBarry Smith #define __FUNC__ "MatDestroy_MPIAIJ" 726e1311b90SBarry Smith int MatDestroy_MPIAIJ(Mat mat) 7271eb62cbbSBarry Smith { 72844a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 7291eb62cbbSBarry Smith int ierr; 73083e2fdc7SBarry Smith 7313a40ed3dSBarry Smith PetscFunctionBegin; 7323a40ed3dSBarry Smith #if defined(USE_PETSC_LOG) 733e1311b90SBarry Smith PLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",aij->M,aij->N); 734a5a9c739SBarry Smith #endif 73583e2fdc7SBarry Smith ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr); 7360452661fSBarry Smith PetscFree(aij->rowners); 73778b31e54SBarry Smith ierr = MatDestroy(aij->A); CHKERRQ(ierr); 73878b31e54SBarry Smith ierr = MatDestroy(aij->B); CHKERRQ(ierr); 7390452661fSBarry Smith if (aij->colmap) PetscFree(aij->colmap); 7400452661fSBarry Smith if (aij->garray) PetscFree(aij->garray); 7411eb62cbbSBarry Smith if (aij->lvec) VecDestroy(aij->lvec); 742a56f8943SBarry Smith if (aij->Mvctx) VecScatterDestroy(aij->Mvctx); 7437a0afa10SBarry Smith if (aij->rowvalues) PetscFree(aij->rowvalues); 7440452661fSBarry Smith PetscFree(aij); 745a5a9c739SBarry Smith PLogObjectDestroy(mat); 7460452661fSBarry Smith PetscHeaderDestroy(mat); 7473a40ed3dSBarry Smith PetscFunctionReturn(0); 7481eb62cbbSBarry Smith } 749ee50ffe9SBarry Smith 7505615d1e5SSatish Balay #undef __FUNC__ 751d4bb536fSBarry Smith #define __FUNC__ "MatView_MPIAIJ_Binary" 7528f6be9afSLois Curfman McInnes extern int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer) 7531eb62cbbSBarry Smith { 754416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 755416022c9SBarry Smith int ierr; 756416022c9SBarry Smith 7573a40ed3dSBarry Smith PetscFunctionBegin; 75817699dbbSLois Curfman McInnes if (aij->size == 1) { 759416022c9SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 760416022c9SBarry Smith } 761a8c6a408SBarry Smith else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported"); 7623a40ed3dSBarry Smith PetscFunctionReturn(0); 763416022c9SBarry Smith } 764416022c9SBarry Smith 7655615d1e5SSatish Balay #undef __FUNC__ 766d4bb536fSBarry Smith #define __FUNC__ "MatView_MPIAIJ_ASCIIorDraworMatlab" 7678f6be9afSLois Curfman McInnes extern int MatView_MPIAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer) 768416022c9SBarry Smith { 76944a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 770dbb450caSBarry Smith Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data; 771a56f8943SBarry Smith int ierr, format,shift = C->indexshift,rank; 772d636dbe3SBarry Smith FILE *fd; 77319bcc07fSBarry Smith ViewerType vtype; 774416022c9SBarry Smith 7753a40ed3dSBarry Smith PetscFunctionBegin; 77619bcc07fSBarry Smith ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 77719bcc07fSBarry Smith if (vtype == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) { 77890ace30eSBarry Smith ierr = ViewerGetFormat(viewer,&format); 7790a198c4cSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 7804e220ebcSLois Curfman McInnes MatInfo info; 7814e220ebcSLois Curfman McInnes int flg; 782a56f8943SBarry Smith MPI_Comm_rank(mat->comm,&rank); 78390ace30eSBarry Smith ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 7844e220ebcSLois Curfman McInnes ierr = MatGetInfo(mat,MAT_LOCAL,&info); 78595e01e2fSLois Curfman McInnes ierr = OptionsHasName(PETSC_NULL,"-mat_aij_no_inode",&flg); CHKERRQ(ierr); 78677c4ece6SBarry Smith PetscSequentialPhaseBegin(mat->comm,1); 78795e01e2fSLois Curfman McInnes if (flg) fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d, not using I-node routines\n", 7884e220ebcSLois Curfman McInnes rank,aij->m,(int)info.nz_used,(int)info.nz_allocated,(int)info.memory); 78995e01e2fSLois Curfman McInnes else fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d, using I-node routines\n", 7904e220ebcSLois Curfman McInnes rank,aij->m,(int)info.nz_used,(int)info.nz_allocated,(int)info.memory); 7914e220ebcSLois Curfman McInnes ierr = MatGetInfo(aij->A,MAT_LOCAL,&info); 7924e220ebcSLois Curfman McInnes fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used); 7934e220ebcSLois Curfman McInnes ierr = MatGetInfo(aij->B,MAT_LOCAL,&info); 7944e220ebcSLois Curfman McInnes fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used); 795a56f8943SBarry Smith fflush(fd); 79677c4ece6SBarry Smith PetscSequentialPhaseEnd(mat->comm,1); 797a40aa06bSLois Curfman McInnes ierr = VecScatterView(aij->Mvctx,viewer); CHKERRQ(ierr); 7983a40ed3dSBarry Smith PetscFunctionReturn(0); 7993a40ed3dSBarry Smith } else if (format == VIEWER_FORMAT_ASCII_INFO) { 8003a40ed3dSBarry Smith PetscFunctionReturn(0); 80108480c60SBarry Smith } 802416022c9SBarry Smith } 803416022c9SBarry Smith 80419bcc07fSBarry Smith if (vtype == DRAW_VIEWER) { 80519bcc07fSBarry Smith Draw draw; 80619bcc07fSBarry Smith PetscTruth isnull; 80719bcc07fSBarry Smith ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr); 8083a40ed3dSBarry Smith ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 80919bcc07fSBarry Smith } 81019bcc07fSBarry Smith 81119bcc07fSBarry Smith if (vtype == ASCII_FILE_VIEWER) { 81290ace30eSBarry Smith ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 81377c4ece6SBarry Smith PetscSequentialPhaseBegin(mat->comm,1); 814d13ab20cSBarry Smith fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 81517699dbbSLois Curfman McInnes aij->rank,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart, 8161eb62cbbSBarry Smith aij->cend); 81778b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 81878b31e54SBarry Smith ierr = MatView(aij->B,viewer); CHKERRQ(ierr); 819d13ab20cSBarry Smith fflush(fd); 82077c4ece6SBarry Smith PetscSequentialPhaseEnd(mat->comm,1); 8213a40ed3dSBarry Smith } else { 822a56f8943SBarry Smith int size = aij->size; 823a56f8943SBarry Smith rank = aij->rank; 82417699dbbSLois Curfman McInnes if (size == 1) { 82578b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 8263a40ed3dSBarry Smith } else { 82795373324SBarry Smith /* assemble the entire matrix onto first processor. */ 82895373324SBarry Smith Mat A; 829ec8511deSBarry Smith Mat_SeqAIJ *Aloc; 8302eb8c8abSBarry Smith int M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct; 83195373324SBarry Smith Scalar *a; 8322ee70a88SLois Curfman McInnes 83317699dbbSLois Curfman McInnes if (!rank) { 83455843e3eSBarry Smith ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 8353a40ed3dSBarry Smith } else { 83655843e3eSBarry Smith ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 83795373324SBarry Smith } 838464493b3SBarry Smith PLogObjectParent(mat,A); 839416022c9SBarry Smith 84095373324SBarry Smith /* copy over the A part */ 841ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->A->data; 8422ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 84395373324SBarry Smith row = aij->rstart; 844dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;} 84595373324SBarry Smith for ( i=0; i<m; i++ ) { 846416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr); 84795373324SBarry Smith row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 84895373324SBarry Smith } 8492ee70a88SLois Curfman McInnes aj = Aloc->j; 850dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;} 85195373324SBarry Smith 85295373324SBarry Smith /* copy over the B part */ 853ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->B->data; 8542ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 85595373324SBarry Smith row = aij->rstart; 8560452661fSBarry Smith ct = cols = (int *) PetscMalloc( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols); 857dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];} 85895373324SBarry Smith for ( i=0; i<m; i++ ) { 859416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr); 86095373324SBarry Smith row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 86195373324SBarry Smith } 8620452661fSBarry Smith PetscFree(ct); 8636d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 8646d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 86555843e3eSBarry Smith /* 86655843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 86755843e3eSBarry Smith synchronized across all processors that share the Draw object 86855843e3eSBarry Smith */ 86955843e3eSBarry Smith if (!rank || vtype == DRAW_VIEWER) { 87078b31e54SBarry Smith ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 87195373324SBarry Smith } 87278b31e54SBarry Smith ierr = MatDestroy(A); CHKERRQ(ierr); 87395373324SBarry Smith } 87495373324SBarry Smith } 8753a40ed3dSBarry Smith PetscFunctionReturn(0); 8761eb62cbbSBarry Smith } 8771eb62cbbSBarry Smith 8785615d1e5SSatish Balay #undef __FUNC__ 879d4bb536fSBarry Smith #define __FUNC__ "MatView_MPIAIJ" 880e1311b90SBarry Smith int MatView_MPIAIJ(Mat mat,Viewer viewer) 881416022c9SBarry Smith { 882416022c9SBarry Smith int ierr; 88319bcc07fSBarry Smith ViewerType vtype; 884416022c9SBarry Smith 8853a40ed3dSBarry Smith PetscFunctionBegin; 88619bcc07fSBarry Smith ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 88719bcc07fSBarry Smith if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER || 88819bcc07fSBarry Smith vtype == DRAW_VIEWER || vtype == MATLAB_VIEWER) { 889d7e8b826SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 8905cd90555SBarry Smith } else if (vtype == BINARY_FILE_VIEWER) { 8913a40ed3dSBarry Smith ierr = MatView_MPIAIJ_Binary(mat,viewer);CHKERRQ(ierr); 8925cd90555SBarry Smith } else { 8935cd90555SBarry Smith SETERRQ(1,1,"Viewer type not supported by PETSc object"); 894416022c9SBarry Smith } 8953a40ed3dSBarry Smith PetscFunctionReturn(0); 896416022c9SBarry Smith } 897416022c9SBarry Smith 8981eb62cbbSBarry Smith /* 8991eb62cbbSBarry Smith This has to provide several versions. 9001eb62cbbSBarry Smith 9011eb62cbbSBarry Smith 2) a) use only local smoothing updating outer values only once. 9021eb62cbbSBarry Smith b) local smoothing updating outer values each inner iteration 903d6dfbf8fSBarry Smith 3) color updating out values betwen colors. 9041eb62cbbSBarry Smith */ 9055615d1e5SSatish Balay #undef __FUNC__ 9065615d1e5SSatish Balay #define __FUNC__ "MatRelax_MPIAIJ" 9078f6be9afSLois Curfman McInnes int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag, 908dbb450caSBarry Smith double fshift,int its,Vec xx) 9098a729477SBarry Smith { 91044a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 911d6dfbf8fSBarry Smith Mat AA = mat->A, BB = mat->B; 912ec8511deSBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data; 913c16cb8f2SBarry Smith Scalar *b,*x,*xs,*ls,d,*v,sum; 9146abc6512SBarry Smith int ierr,*idx, *diag; 915416022c9SBarry Smith int n = mat->n, m = mat->m, i,shift = A->indexshift; 9168a729477SBarry Smith 9173a40ed3dSBarry Smith PetscFunctionBegin; 918d6dfbf8fSBarry Smith VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls); 919dbb450caSBarry Smith xs = x + shift; /* shift by one for index start of 1 */ 920dbb450caSBarry Smith ls = ls + shift; 92183e2fdc7SBarry Smith if (!A->diag) {ierr = MatMarkDiag_SeqAIJ(AA); CHKERRQ(ierr);} 922d6dfbf8fSBarry Smith diag = A->diag; 923c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 924da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 925f830108cSBarry Smith ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,its,xx);CHKERRQ(ierr); 9263a40ed3dSBarry Smith PetscFunctionReturn(0); 927da3a660dSBarry Smith } 9283a40ed3dSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 9293a40ed3dSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 930d6dfbf8fSBarry Smith while (its--) { 931d6dfbf8fSBarry Smith /* go down through the rows */ 932d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 933d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 934dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 935dbb450caSBarry Smith v = A->a + A->i[i] + shift; 936d6dfbf8fSBarry Smith sum = b[i]; 937d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 938dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 939d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 940dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 941dbb450caSBarry Smith v = B->a + B->i[i] + shift; 942d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 94355a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d; 944d6dfbf8fSBarry Smith } 945d6dfbf8fSBarry Smith /* come up through the rows */ 946d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 947d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 948dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 949dbb450caSBarry Smith v = A->a + A->i[i] + shift; 950d6dfbf8fSBarry Smith sum = b[i]; 951d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 952dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 953d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 954dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 955dbb450caSBarry Smith v = B->a + B->i[i] + shift; 956d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 95755a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d; 958d6dfbf8fSBarry Smith } 959d6dfbf8fSBarry Smith } 9603a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 961da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 962f830108cSBarry Smith ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,its,xx);CHKERRQ(ierr); 9633a40ed3dSBarry Smith PetscFunctionReturn(0); 964da3a660dSBarry Smith } 9653a40ed3dSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 9663a40ed3dSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 967d6dfbf8fSBarry Smith while (its--) { 968d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 969d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 970dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 971dbb450caSBarry Smith v = A->a + A->i[i] + shift; 972d6dfbf8fSBarry Smith sum = b[i]; 973d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 974dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 975d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 976dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 977dbb450caSBarry Smith v = B->a + B->i[i] + shift; 978d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 97955a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d; 980d6dfbf8fSBarry Smith } 981d6dfbf8fSBarry Smith } 9823a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 983da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 984f830108cSBarry Smith ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,its,xx);CHKERRQ(ierr); 9853a40ed3dSBarry Smith PetscFunctionReturn(0); 986da3a660dSBarry Smith } 98743a90d84SBarry Smith ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD, 98878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 98943a90d84SBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD, 99078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 991d6dfbf8fSBarry Smith while (its--) { 992d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 993d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 994dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 995dbb450caSBarry Smith v = A->a + A->i[i] + shift; 996d6dfbf8fSBarry Smith sum = b[i]; 997d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 998dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 999d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 1000dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 1001dbb450caSBarry Smith v = B->a + B->i[i] + shift; 1002d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 100355a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d; 1004d6dfbf8fSBarry Smith } 1005d6dfbf8fSBarry Smith } 10063a40ed3dSBarry Smith } else { 1007a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Parallel SOR not supported"); 1008c16cb8f2SBarry Smith } 10093a40ed3dSBarry Smith PetscFunctionReturn(0); 10108a729477SBarry Smith } 1011a66be287SLois Curfman McInnes 10125615d1e5SSatish Balay #undef __FUNC__ 1013d4bb536fSBarry Smith #define __FUNC__ "MatGetInfo_MPIAIJ" 10148f6be9afSLois Curfman McInnes int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1015a66be287SLois Curfman McInnes { 1016a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1017a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 10184e220ebcSLois Curfman McInnes int ierr; 10194e220ebcSLois Curfman McInnes double isend[5], irecv[5]; 1020a66be287SLois Curfman McInnes 10213a40ed3dSBarry Smith PetscFunctionBegin; 10224e220ebcSLois Curfman McInnes info->block_size = 1.0; 10234e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info); CHKERRQ(ierr); 10244e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 10254e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 10264e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info); CHKERRQ(ierr); 10274e220ebcSLois Curfman McInnes isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 10284e220ebcSLois Curfman McInnes isend[3] += info->memory; isend[4] += info->mallocs; 1029a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 10304e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 10314e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 10324e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 10334e220ebcSLois Curfman McInnes info->memory = isend[3]; 10344e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1035a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1036ca161407SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 10374e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 10384e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 10394e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 10404e220ebcSLois Curfman McInnes info->memory = irecv[3]; 10414e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1042a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1043ca161407SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 10444e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 10454e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 10464e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 10474e220ebcSLois Curfman McInnes info->memory = irecv[3]; 10484e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1049a66be287SLois Curfman McInnes } 10504e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 10514e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 10524e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 10538d700155SBarry Smith info->rows_global = (double)mat->M; 10548d700155SBarry Smith info->columns_global = (double)mat->N; 10558d700155SBarry Smith info->rows_local = (double)mat->m; 10568d700155SBarry Smith info->columns_local = (double)mat->N; 10574e220ebcSLois Curfman McInnes 10583a40ed3dSBarry Smith PetscFunctionReturn(0); 1059a66be287SLois Curfman McInnes } 1060a66be287SLois Curfman McInnes 10615615d1e5SSatish Balay #undef __FUNC__ 1062d4bb536fSBarry Smith #define __FUNC__ "MatSetOption_MPIAIJ" 10638f6be9afSLois Curfman McInnes int MatSetOption_MPIAIJ(Mat A,MatOption op) 1064c74985f6SBarry Smith { 1065c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1066c74985f6SBarry Smith 10673a40ed3dSBarry Smith PetscFunctionBegin; 10686d4a8577SBarry Smith if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 10696d4a8577SBarry Smith op == MAT_YES_NEW_NONZERO_LOCATIONS || 10706da5968aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED || 1071c2653b3dSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 107296854ed6SLois Curfman McInnes op == MAT_NEW_NONZERO_ALLOCATION_ERROR || 1073c2653b3dSLois Curfman McInnes op == MAT_NEW_NONZERO_LOCATION_ERROR) { 1074b1fbbac0SLois Curfman McInnes MatSetOption(a->A,op); 1075b1fbbac0SLois Curfman McInnes MatSetOption(a->B,op); 1076b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 1077aeafbbfcSLois Curfman McInnes a->roworiented = 1; 1078c0bbcb79SLois Curfman McInnes MatSetOption(a->A,op); 1079c0bbcb79SLois Curfman McInnes MatSetOption(a->B,op); 1080b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 10816da5968aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 10826d4a8577SBarry Smith op == MAT_SYMMETRIC || 10836d4a8577SBarry Smith op == MAT_STRUCTURALLY_SYMMETRIC || 10846d4a8577SBarry Smith op == MAT_YES_NEW_DIAGONALS) 1085981c4779SBarry Smith PLogInfo(A,"MatSetOption_MPIAIJ:Option ignored\n"); 10866d4a8577SBarry Smith else if (op == MAT_COLUMN_ORIENTED) { 10874b0e389bSBarry Smith a->roworiented = 0; 10884b0e389bSBarry Smith MatSetOption(a->A,op); 10894b0e389bSBarry Smith MatSetOption(a->B,op); 10902b362799SSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 109190f02eecSBarry Smith a->donotstash = 1; 10923a40ed3dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS){ 10933a40ed3dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 10943a40ed3dSBarry Smith } else { 10953a40ed3dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 10963a40ed3dSBarry Smith } 10973a40ed3dSBarry Smith PetscFunctionReturn(0); 1098c74985f6SBarry Smith } 1099c74985f6SBarry Smith 11005615d1e5SSatish Balay #undef __FUNC__ 1101d4bb536fSBarry Smith #define __FUNC__ "MatGetSize_MPIAIJ" 11028f6be9afSLois Curfman McInnes int MatGetSize_MPIAIJ(Mat matin,int *m,int *n) 1103c74985f6SBarry Smith { 110444a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 11053a40ed3dSBarry Smith 11063a40ed3dSBarry Smith PetscFunctionBegin; 11070752156aSBarry Smith if (m) *m = mat->M; 11080752156aSBarry Smith if (n) *n = mat->N; 11093a40ed3dSBarry Smith PetscFunctionReturn(0); 1110c74985f6SBarry Smith } 1111c74985f6SBarry Smith 11125615d1e5SSatish Balay #undef __FUNC__ 1113d4bb536fSBarry Smith #define __FUNC__ "MatGetLocalSize_MPIAIJ" 11148f6be9afSLois Curfman McInnes int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n) 1115c74985f6SBarry Smith { 111644a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 11173a40ed3dSBarry Smith 11183a40ed3dSBarry Smith PetscFunctionBegin; 11190752156aSBarry Smith if (m) *m = mat->m; 1120f830108cSBarry Smith if (n) *n = mat->n; 11213a40ed3dSBarry Smith PetscFunctionReturn(0); 1122c74985f6SBarry Smith } 1123c74985f6SBarry Smith 11245615d1e5SSatish Balay #undef __FUNC__ 1125d4bb536fSBarry Smith #define __FUNC__ "MatGetOwnershipRange_MPIAIJ" 11268f6be9afSLois Curfman McInnes int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n) 1127c74985f6SBarry Smith { 112844a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 11293a40ed3dSBarry Smith 11303a40ed3dSBarry Smith PetscFunctionBegin; 1131c74985f6SBarry Smith *m = mat->rstart; *n = mat->rend; 11323a40ed3dSBarry Smith PetscFunctionReturn(0); 1133c74985f6SBarry Smith } 1134c74985f6SBarry Smith 11356d84be18SBarry Smith extern int MatGetRow_SeqAIJ(Mat,int,int*,int**,Scalar**); 11366d84be18SBarry Smith extern int MatRestoreRow_SeqAIJ(Mat,int,int*,int**,Scalar**); 11376d84be18SBarry Smith 11385615d1e5SSatish Balay #undef __FUNC__ 11395615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIAIJ" 11406d84be18SBarry Smith int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 114139e00950SLois Curfman McInnes { 1142154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 114370f0671dSBarry Smith Scalar *vworkA, *vworkB, **pvA, **pvB,*v_p; 1144154123eaSLois Curfman McInnes int i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart; 1145154123eaSLois Curfman McInnes int nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend; 114670f0671dSBarry Smith int *cmap, *idx_p; 114739e00950SLois Curfman McInnes 11483a40ed3dSBarry Smith PetscFunctionBegin; 1149a8c6a408SBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active"); 11507a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 11517a0afa10SBarry Smith 115270f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 11537a0afa10SBarry Smith /* 11547a0afa10SBarry Smith allocate enough space to hold information from the longest row. 11557a0afa10SBarry Smith */ 11567a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *) mat->A->data,*Ba = (Mat_SeqAIJ *) mat->B->data; 1157c16cb8f2SBarry Smith int max = 1,m = mat->m,tmp; 1158c16cb8f2SBarry Smith for ( i=0; i<m; i++ ) { 11597a0afa10SBarry Smith tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 11607a0afa10SBarry Smith if (max < tmp) { max = tmp; } 11617a0afa10SBarry Smith } 11627a0afa10SBarry Smith mat->rowvalues = (Scalar *) PetscMalloc( max*(sizeof(int)+sizeof(Scalar))); 11637a0afa10SBarry Smith CHKPTRQ(mat->rowvalues); 11647a0afa10SBarry Smith mat->rowindices = (int *) (mat->rowvalues + max); 11657a0afa10SBarry Smith } 11667a0afa10SBarry Smith 1167a8c6a408SBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Only local rows") 1168abc0e9e4SLois Curfman McInnes lrow = row - rstart; 116939e00950SLois Curfman McInnes 1170154123eaSLois Curfman McInnes pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1171154123eaSLois Curfman McInnes if (!v) {pvA = 0; pvB = 0;} 1172154123eaSLois Curfman McInnes if (!idx) {pcA = 0; if (!v) pcB = 0;} 1173f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 1174f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 1175154123eaSLois Curfman McInnes nztot = nzA + nzB; 1176154123eaSLois Curfman McInnes 117770f0671dSBarry Smith cmap = mat->garray; 1178154123eaSLois Curfman McInnes if (v || idx) { 1179154123eaSLois Curfman McInnes if (nztot) { 1180154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 118170f0671dSBarry Smith int imark = -1; 1182154123eaSLois Curfman McInnes if (v) { 118370f0671dSBarry Smith *v = v_p = mat->rowvalues; 118439e00950SLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 118570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1186154123eaSLois Curfman McInnes else break; 1187154123eaSLois Curfman McInnes } 1188154123eaSLois Curfman McInnes imark = i; 118970f0671dSBarry Smith for ( i=0; i<nzA; i++ ) v_p[imark+i] = vworkA[i]; 119070f0671dSBarry Smith for ( i=imark; i<nzB; i++ ) v_p[nzA+i] = vworkB[i]; 1191154123eaSLois Curfman McInnes } 1192154123eaSLois Curfman McInnes if (idx) { 119370f0671dSBarry Smith *idx = idx_p = mat->rowindices; 119470f0671dSBarry Smith if (imark > -1) { 119570f0671dSBarry Smith for ( i=0; i<imark; i++ ) { 119670f0671dSBarry Smith idx_p[i] = cmap[cworkB[i]]; 119770f0671dSBarry Smith } 119870f0671dSBarry Smith } else { 1199154123eaSLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 120070f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1201154123eaSLois Curfman McInnes else break; 1202154123eaSLois Curfman McInnes } 1203154123eaSLois Curfman McInnes imark = i; 120470f0671dSBarry Smith } 120570f0671dSBarry Smith for ( i=0; i<nzA; i++ ) idx_p[imark+i] = cstart + cworkA[i]; 120670f0671dSBarry Smith for ( i=imark; i<nzB; i++ ) idx_p[nzA+i] = cmap[cworkB[i]]; 120739e00950SLois Curfman McInnes } 120839e00950SLois Curfman McInnes } 12091ca473b0SSatish Balay else { 12101ca473b0SSatish Balay if (idx) *idx = 0; 12111ca473b0SSatish Balay if (v) *v = 0; 12121ca473b0SSatish Balay } 1213154123eaSLois Curfman McInnes } 121439e00950SLois Curfman McInnes *nz = nztot; 1215f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 1216f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 12173a40ed3dSBarry Smith PetscFunctionReturn(0); 121839e00950SLois Curfman McInnes } 121939e00950SLois Curfman McInnes 12205615d1e5SSatish Balay #undef __FUNC__ 1221d4bb536fSBarry Smith #define __FUNC__ "MatRestoreRow_MPIAIJ" 12226d84be18SBarry Smith int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 122339e00950SLois Curfman McInnes { 12247a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 12253a40ed3dSBarry Smith 12263a40ed3dSBarry Smith PetscFunctionBegin; 12277a0afa10SBarry Smith if (aij->getrowactive == PETSC_FALSE) { 1228a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called"); 12297a0afa10SBarry Smith } 12307a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 12313a40ed3dSBarry Smith PetscFunctionReturn(0); 123239e00950SLois Curfman McInnes } 123339e00950SLois Curfman McInnes 12345615d1e5SSatish Balay #undef __FUNC__ 12355615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIAIJ" 12368f6be9afSLois Curfman McInnes int MatNorm_MPIAIJ(Mat mat,NormType type,double *norm) 1237855ac2c5SLois Curfman McInnes { 1238855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1239ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data; 1240416022c9SBarry Smith int ierr, i, j, cstart = aij->cstart,shift = amat->indexshift; 1241416022c9SBarry Smith double sum = 0.0; 124204ca555eSLois Curfman McInnes Scalar *v; 124304ca555eSLois Curfman McInnes 12443a40ed3dSBarry Smith PetscFunctionBegin; 124517699dbbSLois Curfman McInnes if (aij->size == 1) { 124614183eadSLois Curfman McInnes ierr = MatNorm(aij->A,type,norm); CHKERRQ(ierr); 124737fa93a5SLois Curfman McInnes } else { 124804ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 124904ca555eSLois Curfman McInnes v = amat->a; 125004ca555eSLois Curfman McInnes for (i=0; i<amat->nz; i++ ) { 12513a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 125204ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 125304ca555eSLois Curfman McInnes #else 125404ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 125504ca555eSLois Curfman McInnes #endif 125604ca555eSLois Curfman McInnes } 125704ca555eSLois Curfman McInnes v = bmat->a; 125804ca555eSLois Curfman McInnes for (i=0; i<bmat->nz; i++ ) { 12593a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 126004ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 126104ca555eSLois Curfman McInnes #else 126204ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 126304ca555eSLois Curfman McInnes #endif 126404ca555eSLois Curfman McInnes } 1265ca161407SBarry Smith ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 126604ca555eSLois Curfman McInnes *norm = sqrt(*norm); 12673a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 126804ca555eSLois Curfman McInnes double *tmp, *tmp2; 126904ca555eSLois Curfman McInnes int *jj, *garray = aij->garray; 1270758f045eSSatish Balay tmp = (double *) PetscMalloc( (aij->N+1)*sizeof(double) ); CHKPTRQ(tmp); 1271758f045eSSatish Balay tmp2 = (double *) PetscMalloc( (aij->N+1)*sizeof(double) ); CHKPTRQ(tmp2); 1272cddf8d76SBarry Smith PetscMemzero(tmp,aij->N*sizeof(double)); 127304ca555eSLois Curfman McInnes *norm = 0.0; 127404ca555eSLois Curfman McInnes v = amat->a; jj = amat->j; 127504ca555eSLois Curfman McInnes for ( j=0; j<amat->nz; j++ ) { 1276579c6b6fSBarry Smith tmp[cstart + *jj++ + shift] += PetscAbsScalar(*v); v++; 127704ca555eSLois Curfman McInnes } 127804ca555eSLois Curfman McInnes v = bmat->a; jj = bmat->j; 127904ca555eSLois Curfman McInnes for ( j=0; j<bmat->nz; j++ ) { 1280579c6b6fSBarry Smith tmp[garray[*jj++ + shift]] += PetscAbsScalar(*v); v++; 128104ca555eSLois Curfman McInnes } 1282ca161407SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 128304ca555eSLois Curfman McInnes for ( j=0; j<aij->N; j++ ) { 128404ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 128504ca555eSLois Curfman McInnes } 12860452661fSBarry Smith PetscFree(tmp); PetscFree(tmp2); 12873a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1288515d9167SLois Curfman McInnes double ntemp = 0.0; 128904ca555eSLois Curfman McInnes for ( j=0; j<amat->m; j++ ) { 1290dbb450caSBarry Smith v = amat->a + amat->i[j] + shift; 129104ca555eSLois Curfman McInnes sum = 0.0; 129204ca555eSLois Curfman McInnes for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) { 1293cddf8d76SBarry Smith sum += PetscAbsScalar(*v); v++; 129404ca555eSLois Curfman McInnes } 1295dbb450caSBarry Smith v = bmat->a + bmat->i[j] + shift; 129604ca555eSLois Curfman McInnes for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) { 1297cddf8d76SBarry Smith sum += PetscAbsScalar(*v); v++; 129804ca555eSLois Curfman McInnes } 1299515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 130004ca555eSLois Curfman McInnes } 1301ca161407SBarry Smith ierr = MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,mat->comm);CHKERRQ(ierr); 1302ca161407SBarry Smith } else { 1303a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for two norm"); 130404ca555eSLois Curfman McInnes } 130537fa93a5SLois Curfman McInnes } 13063a40ed3dSBarry Smith PetscFunctionReturn(0); 1307855ac2c5SLois Curfman McInnes } 1308855ac2c5SLois Curfman McInnes 13095615d1e5SSatish Balay #undef __FUNC__ 13105615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIAIJ" 13118f6be9afSLois Curfman McInnes int MatTranspose_MPIAIJ(Mat A,Mat *matout) 1312b7c46309SBarry Smith { 1313b7c46309SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1314dbb450caSBarry Smith Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data; 1315416022c9SBarry Smith int ierr,shift = Aloc->indexshift; 1316b7c46309SBarry Smith int M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct; 13173a40ed3dSBarry Smith Mat B; 1318b7c46309SBarry Smith Scalar *array; 1319b7c46309SBarry Smith 13203a40ed3dSBarry Smith PetscFunctionBegin; 1321d4bb536fSBarry Smith if (matout == PETSC_NULL && M != N) { 1322a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place"); 1323d4bb536fSBarry Smith } 1324d4bb536fSBarry Smith 1325d4bb536fSBarry Smith ierr = MatCreateMPIAIJ(A->comm,a->n,a->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);CHKERRQ(ierr); 1326b7c46309SBarry Smith 1327b7c46309SBarry Smith /* copy over the A part */ 1328ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->A->data; 1329b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1330b7c46309SBarry Smith row = a->rstart; 1331dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;} 1332b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1333416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1334b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 1335b7c46309SBarry Smith } 1336b7c46309SBarry Smith aj = Aloc->j; 13374af08d9eSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= a->cstart + shift;} 1338b7c46309SBarry Smith 1339b7c46309SBarry Smith /* copy over the B part */ 1340ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->B->data; 1341b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1342b7c46309SBarry Smith row = a->rstart; 13430452661fSBarry Smith ct = cols = (int *) PetscMalloc( (1+ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols); 1344dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];} 1345b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1346416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1347b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 1348b7c46309SBarry Smith } 13490452661fSBarry Smith PetscFree(ct); 13506d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 13516d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 13523638b69dSLois Curfman McInnes if (matout != PETSC_NULL) { 13530de55854SLois Curfman McInnes *matout = B; 13540de55854SLois Curfman McInnes } else { 1355f830108cSBarry Smith PetscOps *Abops; 1356f830108cSBarry Smith struct _MatOps *Aops; 1357f830108cSBarry Smith 13580de55854SLois Curfman McInnes /* This isn't really an in-place transpose .... but free data structures from a */ 13590452661fSBarry Smith PetscFree(a->rowners); 13600de55854SLois Curfman McInnes ierr = MatDestroy(a->A); CHKERRQ(ierr); 13610de55854SLois Curfman McInnes ierr = MatDestroy(a->B); CHKERRQ(ierr); 13620452661fSBarry Smith if (a->colmap) PetscFree(a->colmap); 13630452661fSBarry Smith if (a->garray) PetscFree(a->garray); 13640de55854SLois Curfman McInnes if (a->lvec) VecDestroy(a->lvec); 1365a56f8943SBarry Smith if (a->Mvctx) VecScatterDestroy(a->Mvctx); 13660452661fSBarry Smith PetscFree(a); 1367f830108cSBarry Smith 1368f830108cSBarry Smith /* 1369f830108cSBarry Smith This is horrible, horrible code. We need to keep the 1370f830108cSBarry Smith A pointers for the bops and ops but copy everything 1371f830108cSBarry Smith else from C. 1372f830108cSBarry Smith */ 1373f830108cSBarry Smith Abops = A->bops; 1374f830108cSBarry Smith Aops = A->ops; 1375f09e8eb9SSatish Balay PetscMemcpy(A,B,sizeof(struct _p_Mat)); 1376f830108cSBarry Smith A->bops = Abops; 1377f830108cSBarry Smith A->ops = Aops; 13780452661fSBarry Smith PetscHeaderDestroy(B); 13790de55854SLois Curfman McInnes } 13803a40ed3dSBarry Smith PetscFunctionReturn(0); 1381b7c46309SBarry Smith } 1382b7c46309SBarry Smith 13835615d1e5SSatish Balay #undef __FUNC__ 13845615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIAIJ" 13854b967eb1SSatish Balay int MatDiagonalScale_MPIAIJ(Mat mat,Vec ll,Vec rr) 1386a008b906SSatish Balay { 13874b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 13884b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1389a008b906SSatish Balay int ierr,s1,s2,s3; 1390a008b906SSatish Balay 13913a40ed3dSBarry Smith PetscFunctionBegin; 13924b967eb1SSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3); CHKERRQ(ierr); 13934b967eb1SSatish Balay if (rr) { 1394e1311b90SBarry Smith ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1395a8c6a408SBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,0,"right vector non-conforming local size"); 13964b967eb1SSatish Balay /* Overlap communication with computation. */ 139743a90d84SBarry Smith ierr = VecScatterBegin(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx); CHKERRQ(ierr); 1398a008b906SSatish Balay } 13994b967eb1SSatish Balay if (ll) { 1400e1311b90SBarry Smith ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1401a8c6a408SBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"left vector non-conforming local size"); 1402f830108cSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,0); CHKERRQ(ierr); 14034b967eb1SSatish Balay } 14044b967eb1SSatish Balay /* scale the diagonal block */ 1405f830108cSBarry Smith ierr = (*a->ops->diagonalscale)(a,ll,rr); CHKERRQ(ierr); 14064b967eb1SSatish Balay 14074b967eb1SSatish Balay if (rr) { 14084b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 140943a90d84SBarry Smith ierr = VecScatterEnd(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx); CHKERRQ(ierr); 1410f830108cSBarry Smith ierr = (*b->ops->diagonalscale)(b,0,aij->lvec); CHKERRQ(ierr); 14114b967eb1SSatish Balay } 14124b967eb1SSatish Balay 14133a40ed3dSBarry Smith PetscFunctionReturn(0); 1414a008b906SSatish Balay } 1415a008b906SSatish Balay 1416a008b906SSatish Balay 1417682d7d0cSBarry Smith extern int MatPrintHelp_SeqAIJ(Mat); 14185615d1e5SSatish Balay #undef __FUNC__ 1419d4bb536fSBarry Smith #define __FUNC__ "MatPrintHelp_MPIAIJ" 14208f6be9afSLois Curfman McInnes int MatPrintHelp_MPIAIJ(Mat A) 1421682d7d0cSBarry Smith { 1422682d7d0cSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*) A->data; 14233a40ed3dSBarry Smith int ierr; 1424682d7d0cSBarry Smith 14253a40ed3dSBarry Smith PetscFunctionBegin; 14263a40ed3dSBarry Smith if (!a->rank) { 14273a40ed3dSBarry Smith ierr = MatPrintHelp_SeqAIJ(a->A);CHKERRQ(ierr); 14283a40ed3dSBarry Smith } 14293a40ed3dSBarry Smith PetscFunctionReturn(0); 1430682d7d0cSBarry Smith } 1431682d7d0cSBarry Smith 14325615d1e5SSatish Balay #undef __FUNC__ 1433d4bb536fSBarry Smith #define __FUNC__ "MatGetBlockSize_MPIAIJ" 14348f6be9afSLois Curfman McInnes int MatGetBlockSize_MPIAIJ(Mat A,int *bs) 14355a838052SSatish Balay { 14363a40ed3dSBarry Smith PetscFunctionBegin; 14375a838052SSatish Balay *bs = 1; 14383a40ed3dSBarry Smith PetscFunctionReturn(0); 14395a838052SSatish Balay } 14405615d1e5SSatish Balay #undef __FUNC__ 1441d4bb536fSBarry Smith #define __FUNC__ "MatSetUnfactored_MPIAIJ" 14428f6be9afSLois Curfman McInnes int MatSetUnfactored_MPIAIJ(Mat A) 1443bb5a7306SBarry Smith { 1444bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*) A->data; 1445bb5a7306SBarry Smith int ierr; 14463a40ed3dSBarry Smith 14473a40ed3dSBarry Smith PetscFunctionBegin; 1448bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A); CHKERRQ(ierr); 14493a40ed3dSBarry Smith PetscFunctionReturn(0); 1450bb5a7306SBarry Smith } 1451bb5a7306SBarry Smith 1452d4bb536fSBarry Smith #undef __FUNC__ 1453d4bb536fSBarry Smith #define __FUNC__ "MatEqual_MPIAIJ" 1454d4bb536fSBarry Smith int MatEqual_MPIAIJ(Mat A, Mat B, PetscTruth *flag) 1455d4bb536fSBarry Smith { 1456d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *) B->data,*matA = (Mat_MPIAIJ *) A->data; 1457d4bb536fSBarry Smith Mat a, b, c, d; 1458d4bb536fSBarry Smith PetscTruth flg; 1459d4bb536fSBarry Smith int ierr; 1460d4bb536fSBarry Smith 14613a40ed3dSBarry Smith PetscFunctionBegin; 1462a8c6a408SBarry Smith if (B->type != MATMPIAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,0,"Matrices must be same type"); 1463d4bb536fSBarry Smith a = matA->A; b = matA->B; 1464d4bb536fSBarry Smith c = matB->A; d = matB->B; 1465d4bb536fSBarry Smith 1466d4bb536fSBarry Smith ierr = MatEqual(a, c, &flg); CHKERRQ(ierr); 1467d4bb536fSBarry Smith if (flg == PETSC_TRUE) { 1468d4bb536fSBarry Smith ierr = MatEqual(b, d, &flg); CHKERRQ(ierr); 1469d4bb536fSBarry Smith } 1470ca161407SBarry Smith ierr = MPI_Allreduce(&flg, flag, 1, MPI_INT, MPI_LAND, A->comm);CHKERRQ(ierr); 14713a40ed3dSBarry Smith PetscFunctionReturn(0); 1472d4bb536fSBarry Smith } 1473d4bb536fSBarry Smith 14748f6be9afSLois Curfman McInnes extern int MatConvertSameType_MPIAIJ(Mat,Mat *,int); 14752f86bd48SSatish Balay extern int MatIncreaseOverlap_MPIAIJ(Mat , int, IS *, int); 14760a198c4cSBarry Smith extern int MatFDColoringCreate_MPIAIJ(Mat,ISColoring,MatFDColoring); 14770a198c4cSBarry Smith extern int MatGetSubMatrices_MPIAIJ (Mat ,int , IS *,IS *,MatGetSubMatrixCall,Mat **); 14786a6a5d1dSBarry Smith extern int MatGetSubMatrix_MPIAIJ (Mat ,IS,IS,int,MatGetSubMatrixCall,Mat *); 147900e6dbe6SBarry Smith 14808a729477SBarry Smith /* -------------------------------------------------------------------*/ 14812ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ, 148239e00950SLois Curfman McInnes MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ, 148344a69424SLois Curfman McInnes MatMult_MPIAIJ,MatMultAdd_MPIAIJ, 148444a69424SLois Curfman McInnes MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ, 148536ce4990SBarry Smith 0,0, 148636ce4990SBarry Smith 0,0, 148736ce4990SBarry Smith 0,0, 148844a69424SLois Curfman McInnes MatRelax_MPIAIJ, 1489b7c46309SBarry Smith MatTranspose_MPIAIJ, 1490d4bb536fSBarry Smith MatGetInfo_MPIAIJ,MatEqual_MPIAIJ, 1491a008b906SSatish Balay MatGetDiagonal_MPIAIJ,MatDiagonalScale_MPIAIJ,MatNorm_MPIAIJ, 1492ee50ffe9SBarry Smith MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ, 14931eb62cbbSBarry Smith 0, 1494299609e3SLois Curfman McInnes MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ, 149536ce4990SBarry Smith 0,0,0,0, 1496d1710a03SLois Curfman McInnes MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ, 149736ce4990SBarry Smith 0,0, 149894a9d846SBarry Smith 0,0,MatConvertSameType_MPIAIJ,0,0, 1499b49de8d1SLois Curfman McInnes 0,0,0, 1500598137ffSSatish Balay MatGetSubMatrices_MPIAIJ,MatIncreaseOverlap_MPIAIJ,MatGetValues_MPIAIJ,0, 1501052efed2SBarry Smith MatPrintHelp_MPIAIJ, 15023b2fbd54SBarry Smith MatScale_MPIAIJ,0,0,0, 15030a198c4cSBarry Smith MatGetBlockSize_MPIAIJ,0,0,0,0, 150400e6dbe6SBarry Smith MatFDColoringCreate_MPIAIJ,0,MatSetUnfactored_MPIAIJ, 1505ca161407SBarry Smith 0,0,MatGetSubMatrix_MPIAIJ}; 150636ce4990SBarry Smith 15078a729477SBarry Smith 15085615d1e5SSatish Balay #undef __FUNC__ 15095615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIAIJ" 15101987afe7SBarry Smith /*@C 1511ff756334SLois Curfman McInnes MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format 15123a511b96SLois Curfman McInnes (the default parallel PETSc format). For good matrix assembly performance 15133a511b96SLois Curfman McInnes the user should preallocate the matrix storage by setting the parameters 15143a511b96SLois Curfman McInnes d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 15153a511b96SLois Curfman McInnes performance can be increased by more than a factor of 50. 15168a729477SBarry Smith 1517*db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1518*db81eaa0SLois Curfman McInnes 15198a729477SBarry Smith Input Parameters: 1520*db81eaa0SLois Curfman McInnes + comm - MPI communicator 15217d3e4905SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 152292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 152392e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 15241a3896d6SBarry Smith . n - This value should be the same as the local size used in creating the 15251a3896d6SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 15261a3896d6SBarry Smith calculated if N is given) For square matrices n is almost always m. 15277d3e4905SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 152892e8d321SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 1529ab693e5aSLois Curfman McInnes . d_nz - number of nonzeros per row in diagonal portion of local submatrix 1530ff756334SLois Curfman McInnes (same for all local rows) 15312bd5e0b2SLois Curfman McInnes . d_nzz - array containing the number of nonzeros in the various rows of the 153292e8d321SLois Curfman McInnes diagonal portion of the local submatrix (possibly different for each row) 15332bd5e0b2SLois Curfman McInnes or PETSC_NULL. You must leave room for the diagonal entry even if 15342bd5e0b2SLois Curfman McInnes it is zero. 15352bd5e0b2SLois Curfman McInnes . o_nz - number of nonzeros per row in the off-diagonal portion of local 1536ab693e5aSLois Curfman McInnes submatrix (same for all local rows). 1537*db81eaa0SLois Curfman McInnes - o_nzz - array containing the number of nonzeros in the various rows of the 15382bd5e0b2SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 15392bd5e0b2SLois Curfman McInnes each row) or PETSC_NULL. 15408a729477SBarry Smith 1541ff756334SLois Curfman McInnes Output Parameter: 154244cd7ae7SLois Curfman McInnes . A - the matrix 15438a729477SBarry Smith 1544b259b22eSLois Curfman McInnes Notes: 1545ff756334SLois Curfman McInnes The AIJ format (also called the Yale sparse matrix format or 1546ff756334SLois Curfman McInnes compressed row storage), is fully compatible with standard Fortran 77 15470002213bSLois Curfman McInnes storage. That is, the stored row and column indices can begin at 15480002213bSLois Curfman McInnes either one (as in Fortran) or zero. See the users manual for details. 1549ff756334SLois Curfman McInnes 1550ff756334SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 1551ff756334SLois Curfman McInnes (possibly both). 1552ff756334SLois Curfman McInnes 15535511cfe3SLois Curfman McInnes By default, this format uses inodes (identical nodes) when possible. 15545511cfe3SLois Curfman McInnes We search for consecutive rows with the same nonzero structure, thereby 15555511cfe3SLois Curfman McInnes reusing matrix information to achieve increased efficiency. 15565511cfe3SLois Curfman McInnes 15575511cfe3SLois Curfman McInnes Options Database Keys: 1558*db81eaa0SLois Curfman McInnes + -mat_aij_no_inode - Do not use inodes 1559*db81eaa0SLois Curfman McInnes . -mat_aij_inode_limit <limit> - Sets inode limit (max limit=5) 1560*db81eaa0SLois Curfman McInnes - -mat_aij_oneindex - Internally use indexing starting at 1 1561*db81eaa0SLois Curfman McInnes rather than 0. Note that when calling MatSetValues(), 1562*db81eaa0SLois Curfman McInnes the user still MUST index entries starting at 0! 15635511cfe3SLois Curfman McInnes 1564e0245417SLois Curfman McInnes Storage Information: 1565e0245417SLois Curfman McInnes For a square global matrix we define each processor's diagonal portion 1566e0245417SLois Curfman McInnes to be its local rows and the corresponding columns (a square submatrix); 1567e0245417SLois Curfman McInnes each processor's off-diagonal portion encompasses the remainder of the 1568e0245417SLois Curfman McInnes local matrix (a rectangular submatrix). 1569e0245417SLois Curfman McInnes 1570e0245417SLois Curfman McInnes The user can specify preallocated storage for the diagonal part of 15715ace5be8SLois Curfman McInnes the local submatrix with either d_nz or d_nnz (not both). Set 15725ace5be8SLois Curfman McInnes d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 15735ace5be8SLois Curfman McInnes memory allocation. Likewise, specify preallocated storage for the 15745ace5be8SLois Curfman McInnes off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1575ff756334SLois Curfman McInnes 15765511cfe3SLois Curfman McInnes Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 15775511cfe3SLois Curfman McInnes the figure below we depict these three local rows and all columns (0-11). 15782191d07cSBarry Smith 1579*db81eaa0SLois Curfman McInnes .vb 1580*db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 1581*db81eaa0SLois Curfman McInnes ------------------- 1582*db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 1583*db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 1584*db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 1585*db81eaa0SLois Curfman McInnes ------------------- 1586*db81eaa0SLois Curfman McInnes .ve 1587b810aeb4SBarry Smith 15885511cfe3SLois Curfman McInnes Thus, any entries in the d locations are stored in the d (diagonal) 15895511cfe3SLois Curfman McInnes submatrix, and any entries in the o locations are stored in the 15905511cfe3SLois Curfman McInnes o (off-diagonal) submatrix. Note that the d and the o submatrices are 15915511cfe3SLois Curfman McInnes stored simply in the MATSEQAIJ format for compressed row storage. 15925511cfe3SLois Curfman McInnes 15935511cfe3SLois Curfman McInnes Now d_nz should indicate the number of nonzeros per row in the d matrix, 15945511cfe3SLois Curfman McInnes and o_nz should indicate the number of nonzeros per row in the o matrix. 15955511cfe3SLois Curfman McInnes In general, for PDE problems in which most nonzeros are near the diagonal, 15963d323bbdSBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 159792e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 15986da5968aSLois Curfman McInnes matrices. 15993a511b96SLois Curfman McInnes 1600dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel 1601ff756334SLois Curfman McInnes 1602fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues() 16038a729477SBarry Smith @*/ 1604e1311b90SBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 16058a729477SBarry Smith { 160644cd7ae7SLois Curfman McInnes Mat B; 160744cd7ae7SLois Curfman McInnes Mat_MPIAIJ *b; 160836ce4990SBarry Smith int ierr, i,sum[2],work[2],size; 1609416022c9SBarry Smith 16103a40ed3dSBarry Smith PetscFunctionBegin; 16113914022bSBarry Smith MPI_Comm_size(comm,&size); 16123914022bSBarry Smith if (size == 1) { 16133914022bSBarry Smith if (M == PETSC_DECIDE) M = m; 16143914022bSBarry Smith if (N == PETSC_DECIDE) N = n; 16153914022bSBarry Smith ierr = MatCreateSeqAIJ(comm,M,N,d_nz,d_nnz,A); CHKERRQ(ierr); 16163a40ed3dSBarry Smith PetscFunctionReturn(0); 16173914022bSBarry Smith } 16183914022bSBarry Smith 161944cd7ae7SLois Curfman McInnes *A = 0; 1620f830108cSBarry Smith PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIAIJ,comm,MatDestroy,MatView); 162144cd7ae7SLois Curfman McInnes PLogObjectCreate(B); 162244cd7ae7SLois Curfman McInnes B->data = (void *) (b = PetscNew(Mat_MPIAIJ)); CHKPTRQ(b); 162344cd7ae7SLois Curfman McInnes PetscMemzero(b,sizeof(Mat_MPIAIJ)); 1624f830108cSBarry Smith PetscMemcpy(B->ops,&MatOps,sizeof(struct _MatOps)); 1625e1311b90SBarry Smith B->ops->destroy = MatDestroy_MPIAIJ; 1626e1311b90SBarry Smith B->ops->view = MatView_MPIAIJ; 162744cd7ae7SLois Curfman McInnes B->factor = 0; 162844cd7ae7SLois Curfman McInnes B->assembled = PETSC_FALSE; 162990f02eecSBarry Smith B->mapping = 0; 1630d6dfbf8fSBarry Smith 163147794344SBarry Smith B->insertmode = NOT_SET_VALUES; 16329eb4d147SSatish Balay b->size = size; 163344cd7ae7SLois Curfman McInnes MPI_Comm_rank(comm,&b->rank); 16341eb62cbbSBarry Smith 16353a40ed3dSBarry Smith if (m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) { 1636a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 16373a40ed3dSBarry Smith } 16381987afe7SBarry Smith 1639dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 16401eb62cbbSBarry Smith work[0] = m; work[1] = n; 1641ca161407SBarry Smith ierr = MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );CHKERRQ(ierr); 1642dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE) M = sum[0]; 1643dbd7a890SLois Curfman McInnes if (N == PETSC_DECIDE) N = sum[1]; 16441eb62cbbSBarry Smith } 164544cd7ae7SLois Curfman McInnes if (m == PETSC_DECIDE) {m = M/b->size + ((M % b->size) > b->rank);} 164644cd7ae7SLois Curfman McInnes if (n == PETSC_DECIDE) {n = N/b->size + ((N % b->size) > b->rank);} 164744cd7ae7SLois Curfman McInnes b->m = m; B->m = m; 164844cd7ae7SLois Curfman McInnes b->n = n; B->n = n; 164944cd7ae7SLois Curfman McInnes b->N = N; B->N = N; 165044cd7ae7SLois Curfman McInnes b->M = M; B->M = M; 16511eb62cbbSBarry Smith 16521eb62cbbSBarry Smith /* build local table of row and column ownerships */ 165344cd7ae7SLois Curfman McInnes b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners); 1654f09e8eb9SSatish Balay PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIAIJ)); 1655603f58a4SSatish Balay b->cowners = b->rowners + b->size + 2; 1656ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 165744cd7ae7SLois Curfman McInnes b->rowners[0] = 0; 165844cd7ae7SLois Curfman McInnes for ( i=2; i<=b->size; i++ ) { 165944cd7ae7SLois Curfman McInnes b->rowners[i] += b->rowners[i-1]; 16608a729477SBarry Smith } 166144cd7ae7SLois Curfman McInnes b->rstart = b->rowners[b->rank]; 166244cd7ae7SLois Curfman McInnes b->rend = b->rowners[b->rank+1]; 1663ca161407SBarry Smith ierr = MPI_Allgather(&n,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 166444cd7ae7SLois Curfman McInnes b->cowners[0] = 0; 166544cd7ae7SLois Curfman McInnes for ( i=2; i<=b->size; i++ ) { 166644cd7ae7SLois Curfman McInnes b->cowners[i] += b->cowners[i-1]; 16678a729477SBarry Smith } 166844cd7ae7SLois Curfman McInnes b->cstart = b->cowners[b->rank]; 166944cd7ae7SLois Curfman McInnes b->cend = b->cowners[b->rank+1]; 16708a729477SBarry Smith 16715ace5be8SLois Curfman McInnes if (d_nz == PETSC_DEFAULT) d_nz = 5; 1672029af93fSBarry Smith ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr); 167344cd7ae7SLois Curfman McInnes PLogObjectParent(B,b->A); 16747b8455f0SLois Curfman McInnes if (o_nz == PETSC_DEFAULT) o_nz = 0; 1675029af93fSBarry Smith ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr); 167644cd7ae7SLois Curfman McInnes PLogObjectParent(B,b->B); 16778a729477SBarry Smith 16781eb62cbbSBarry Smith /* build cache for off array entries formed */ 167944cd7ae7SLois Curfman McInnes ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr); 168090f02eecSBarry Smith b->donotstash = 0; 168144cd7ae7SLois Curfman McInnes b->colmap = 0; 168244cd7ae7SLois Curfman McInnes b->garray = 0; 168344cd7ae7SLois Curfman McInnes b->roworiented = 1; 16848a729477SBarry Smith 16851eb62cbbSBarry Smith /* stuff used for matrix vector multiply */ 168644cd7ae7SLois Curfman McInnes b->lvec = 0; 168744cd7ae7SLois Curfman McInnes b->Mvctx = 0; 16888a729477SBarry Smith 16897a0afa10SBarry Smith /* stuff for MatGetRow() */ 169044cd7ae7SLois Curfman McInnes b->rowindices = 0; 169144cd7ae7SLois Curfman McInnes b->rowvalues = 0; 169244cd7ae7SLois Curfman McInnes b->getrowactive = PETSC_FALSE; 16937a0afa10SBarry Smith 169444cd7ae7SLois Curfman McInnes *A = B; 16953a40ed3dSBarry Smith PetscFunctionReturn(0); 1696d6dfbf8fSBarry Smith } 1697c74985f6SBarry Smith 16985615d1e5SSatish Balay #undef __FUNC__ 16995615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIAIJ" 17008f6be9afSLois Curfman McInnes int MatConvertSameType_MPIAIJ(Mat matin,Mat *newmat,int cpvalues) 1701d6dfbf8fSBarry Smith { 1702d6dfbf8fSBarry Smith Mat mat; 1703416022c9SBarry Smith Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data; 1704a1b97e82SLois Curfman McInnes int ierr, len=0, flg; 1705d6dfbf8fSBarry Smith 17063a40ed3dSBarry Smith PetscFunctionBegin; 1707416022c9SBarry Smith *newmat = 0; 1708f830108cSBarry Smith PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIAIJ,matin->comm,MatDestroy,MatView); 1709a5a9c739SBarry Smith PLogObjectCreate(mat); 17100452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a); 1711f830108cSBarry Smith PetscMemcpy(mat->ops,&MatOps,sizeof(struct _MatOps)); 1712e1311b90SBarry Smith mat->ops->destroy = MatDestroy_MPIAIJ; 1713e1311b90SBarry Smith mat->ops->view = MatView_MPIAIJ; 1714d6dfbf8fSBarry Smith mat->factor = matin->factor; 1715c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1716d6dfbf8fSBarry Smith 171744cd7ae7SLois Curfman McInnes a->m = mat->m = oldmat->m; 171844cd7ae7SLois Curfman McInnes a->n = mat->n = oldmat->n; 171944cd7ae7SLois Curfman McInnes a->M = mat->M = oldmat->M; 172044cd7ae7SLois Curfman McInnes a->N = mat->N = oldmat->N; 1721d6dfbf8fSBarry Smith 1722416022c9SBarry Smith a->rstart = oldmat->rstart; 1723416022c9SBarry Smith a->rend = oldmat->rend; 1724416022c9SBarry Smith a->cstart = oldmat->cstart; 1725416022c9SBarry Smith a->cend = oldmat->cend; 172617699dbbSLois Curfman McInnes a->size = oldmat->size; 172717699dbbSLois Curfman McInnes a->rank = oldmat->rank; 172847794344SBarry Smith mat->insertmode = NOT_SET_VALUES; 1729bcd2baecSBarry Smith a->rowvalues = 0; 1730bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 1731d6dfbf8fSBarry Smith 1732603f58a4SSatish Balay a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 1733f09e8eb9SSatish Balay PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIAIJ)); 1734603f58a4SSatish Balay a->cowners = a->rowners + a->size + 2; 1735603f58a4SSatish Balay PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int)); 1736416022c9SBarry Smith ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 17372ee70a88SLois Curfman McInnes if (oldmat->colmap) { 17380452661fSBarry Smith a->colmap = (int *) PetscMalloc((a->N)*sizeof(int));CHKPTRQ(a->colmap); 1739416022c9SBarry Smith PLogObjectMemory(mat,(a->N)*sizeof(int)); 1740416022c9SBarry Smith PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int)); 1741416022c9SBarry Smith } else a->colmap = 0; 17423f41c07dSBarry Smith if (oldmat->garray) { 17433f41c07dSBarry Smith len = ((Mat_SeqAIJ *) (oldmat->B->data))->n; 17443f41c07dSBarry Smith a->garray = (int *) PetscMalloc((len+1)*sizeof(int)); CHKPTRQ(a->garray); 1745464493b3SBarry Smith PLogObjectMemory(mat,len*sizeof(int)); 17463f41c07dSBarry Smith if (len) PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 1747416022c9SBarry Smith } else a->garray = 0; 1748d6dfbf8fSBarry Smith 1749416022c9SBarry Smith ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 1750416022c9SBarry Smith PLogObjectParent(mat,a->lvec); 1751a56f8943SBarry Smith ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 1752416022c9SBarry Smith PLogObjectParent(mat,a->Mvctx); 1753416022c9SBarry Smith ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 1754416022c9SBarry Smith PLogObjectParent(mat,a->A); 1755416022c9SBarry Smith ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 1756416022c9SBarry Smith PLogObjectParent(mat,a->B); 17575dd7a6c7SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 175825cdf11fSBarry Smith if (flg) { 1759682d7d0cSBarry Smith ierr = MatPrintHelp(mat); CHKERRQ(ierr); 1760682d7d0cSBarry Smith } 17618a729477SBarry Smith *newmat = mat; 17623a40ed3dSBarry Smith PetscFunctionReturn(0); 17638a729477SBarry Smith } 1764416022c9SBarry Smith 176577c4ece6SBarry Smith #include "sys.h" 1766416022c9SBarry Smith 17675615d1e5SSatish Balay #undef __FUNC__ 17685615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIAIJ" 176919bcc07fSBarry Smith int MatLoad_MPIAIJ(Viewer viewer,MatType type,Mat *newmat) 1770416022c9SBarry Smith { 1771d65a2f8fSBarry Smith Mat A; 1772d65a2f8fSBarry Smith Scalar *vals,*svals; 177319bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 1774416022c9SBarry Smith MPI_Status status; 17753a40ed3dSBarry Smith int i, nz, ierr, j,rstart, rend, fd; 177617699dbbSLois Curfman McInnes int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 1777d65a2f8fSBarry Smith int *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols; 177819bcc07fSBarry Smith int tag = ((PetscObject)viewer)->tag; 1779416022c9SBarry Smith 17803a40ed3dSBarry Smith PetscFunctionBegin; 178117699dbbSLois Curfman McInnes MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 178217699dbbSLois Curfman McInnes if (!rank) { 178390ace30eSBarry Smith ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 17840752156aSBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT); CHKERRQ(ierr); 1785a8c6a408SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object"); 1786d64ed03dSBarry Smith if (header[3] < 0) { 1787a8c6a408SBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix in special format on disk, cannot load as MPIAIJ"); 1788d64ed03dSBarry Smith } 17896c5fab8fSBarry Smith } 17906c5fab8fSBarry Smith 1791d64ed03dSBarry Smith 1792ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 1793416022c9SBarry Smith M = header[1]; N = header[2]; 1794416022c9SBarry Smith /* determine ownership of all rows */ 179517699dbbSLois Curfman McInnes m = M/size + ((M % size) > rank); 17960452661fSBarry Smith rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners); 1797ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 1798416022c9SBarry Smith rowners[0] = 0; 179917699dbbSLois Curfman McInnes for ( i=2; i<=size; i++ ) { 1800416022c9SBarry Smith rowners[i] += rowners[i-1]; 1801416022c9SBarry Smith } 180217699dbbSLois Curfman McInnes rstart = rowners[rank]; 180317699dbbSLois Curfman McInnes rend = rowners[rank+1]; 1804416022c9SBarry Smith 1805416022c9SBarry Smith /* distribute row lengths to all processors */ 18060452661fSBarry Smith ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens); 1807416022c9SBarry Smith offlens = ourlens + (rend-rstart); 180817699dbbSLois Curfman McInnes if (!rank) { 18090452661fSBarry Smith rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths); 18100752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr); 18110452661fSBarry Smith sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 181217699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i]; 1813ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr); 18140452661fSBarry Smith PetscFree(sndcounts); 18153a40ed3dSBarry Smith } else { 1816ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);CHKERRQ(ierr); 1817416022c9SBarry Smith } 1818416022c9SBarry Smith 181917699dbbSLois Curfman McInnes if (!rank) { 1820416022c9SBarry Smith /* calculate the number of nonzeros on each processor */ 18210452661fSBarry Smith procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 1822cddf8d76SBarry Smith PetscMemzero(procsnz,size*sizeof(int)); 182317699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 1824416022c9SBarry Smith for ( j=rowners[i]; j< rowners[i+1]; j++ ) { 1825416022c9SBarry Smith procsnz[i] += rowlengths[j]; 1826416022c9SBarry Smith } 1827416022c9SBarry Smith } 18280452661fSBarry Smith PetscFree(rowlengths); 1829416022c9SBarry Smith 1830416022c9SBarry Smith /* determine max buffer needed and allocate it */ 1831416022c9SBarry Smith maxnz = 0; 183217699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 18330452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 1834416022c9SBarry Smith } 18350452661fSBarry Smith cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 1836416022c9SBarry Smith 1837416022c9SBarry Smith /* read in my part of the matrix column indices */ 1838416022c9SBarry Smith nz = procsnz[0]; 18390452661fSBarry Smith mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 18400752156aSBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT); CHKERRQ(ierr); 1841d65a2f8fSBarry Smith 1842d65a2f8fSBarry Smith /* read in every one elses and ship off */ 184317699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { 1844d65a2f8fSBarry Smith nz = procsnz[i]; 18450752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr); 1846ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 1847d65a2f8fSBarry Smith } 18480452661fSBarry Smith PetscFree(cols); 18493a40ed3dSBarry Smith } else { 1850416022c9SBarry Smith /* determine buffer space needed for message */ 1851416022c9SBarry Smith nz = 0; 1852416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1853416022c9SBarry Smith nz += ourlens[i]; 1854416022c9SBarry Smith } 18550452661fSBarry Smith mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 1856416022c9SBarry Smith 1857416022c9SBarry Smith /* receive message of column indices*/ 1858ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 1859ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 1860a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 1861416022c9SBarry Smith } 1862416022c9SBarry Smith 1863416022c9SBarry Smith /* loop over local rows, determining number of off diagonal entries */ 1864cddf8d76SBarry Smith PetscMemzero(offlens,m*sizeof(int)); 1865416022c9SBarry Smith jj = 0; 1866416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1867416022c9SBarry Smith for ( j=0; j<ourlens[i]; j++ ) { 1868d65a2f8fSBarry Smith if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 1869416022c9SBarry Smith jj++; 1870416022c9SBarry Smith } 1871416022c9SBarry Smith } 1872d65a2f8fSBarry Smith 1873d65a2f8fSBarry Smith /* create our matrix */ 1874416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1875416022c9SBarry Smith ourlens[i] -= offlens[i]; 1876416022c9SBarry Smith } 1877d65a2f8fSBarry Smith ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1878d65a2f8fSBarry Smith A = *newmat; 18796d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 1880d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1881d65a2f8fSBarry Smith ourlens[i] += offlens[i]; 1882d65a2f8fSBarry Smith } 1883416022c9SBarry Smith 188417699dbbSLois Curfman McInnes if (!rank) { 18850452661fSBarry Smith vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals); 1886416022c9SBarry Smith 1887416022c9SBarry Smith /* read in my part of the matrix numerical values */ 1888416022c9SBarry Smith nz = procsnz[0]; 18890752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 1890d65a2f8fSBarry Smith 1891d65a2f8fSBarry Smith /* insert into matrix */ 1892d65a2f8fSBarry Smith jj = rstart; 1893d65a2f8fSBarry Smith smycols = mycols; 1894d65a2f8fSBarry Smith svals = vals; 1895d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1896d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1897d65a2f8fSBarry Smith smycols += ourlens[i]; 1898d65a2f8fSBarry Smith svals += ourlens[i]; 1899d65a2f8fSBarry Smith jj++; 1900416022c9SBarry Smith } 1901416022c9SBarry Smith 1902d65a2f8fSBarry Smith /* read in other processors and ship out */ 190317699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { 1904416022c9SBarry Smith nz = procsnz[i]; 19050752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 1906ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 1907416022c9SBarry Smith } 19080452661fSBarry Smith PetscFree(procsnz); 19093a40ed3dSBarry Smith } else { 1910d65a2f8fSBarry Smith /* receive numeric values */ 19110452661fSBarry Smith vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals); 1912416022c9SBarry Smith 1913d65a2f8fSBarry Smith /* receive message of values*/ 1914ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 1915ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 1916a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 1917d65a2f8fSBarry Smith 1918d65a2f8fSBarry Smith /* insert into matrix */ 1919d65a2f8fSBarry Smith jj = rstart; 1920d65a2f8fSBarry Smith smycols = mycols; 1921d65a2f8fSBarry Smith svals = vals; 1922d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1923d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1924d65a2f8fSBarry Smith smycols += ourlens[i]; 1925d65a2f8fSBarry Smith svals += ourlens[i]; 1926d65a2f8fSBarry Smith jj++; 1927d65a2f8fSBarry Smith } 1928d65a2f8fSBarry Smith } 19290452661fSBarry Smith PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners); 1930d65a2f8fSBarry Smith 19316d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 19326d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 19333a40ed3dSBarry Smith PetscFunctionReturn(0); 1934416022c9SBarry Smith } 1935a0ff6018SBarry Smith 193629da9460SBarry Smith #undef __FUNC__ 193729da9460SBarry Smith #define __FUNC__ "MatGetSubMatrix_MPIAIJ" 1938a0ff6018SBarry Smith /* 193929da9460SBarry Smith Not great since it makes two copies of the submatrix, first an SeqAIJ 194029da9460SBarry Smith in local and then by concatenating the local matrices the end result. 194129da9460SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIAIJ() 1942a0ff6018SBarry Smith */ 19436a6a5d1dSBarry Smith int MatGetSubMatrix_MPIAIJ(Mat mat,IS isrow,IS iscol,int csize,MatGetSubMatrixCall call,Mat *newmat) 1944a0ff6018SBarry Smith { 194500e6dbe6SBarry Smith int ierr, i, m,n,rstart,row,rend,nz,*cwork,size,rank,j; 1946fee21e36SBarry Smith Mat *local,M, Mreuse; 194700e6dbe6SBarry Smith Scalar *vwork,*aa; 194800e6dbe6SBarry Smith MPI_Comm comm = mat->comm; 194900e6dbe6SBarry Smith Mat_SeqAIJ *aij; 195000e6dbe6SBarry Smith int *ii, *jj,nlocal,*dlens,*olens,dlen,olen,jend; 1951a0ff6018SBarry Smith 1952a0ff6018SBarry Smith PetscFunctionBegin; 195300e6dbe6SBarry Smith MPI_Comm_rank(comm,&rank); 195400e6dbe6SBarry Smith MPI_Comm_size(comm,&size); 195500e6dbe6SBarry Smith 1956fee21e36SBarry Smith if (call == MAT_REUSE_MATRIX) { 1957fee21e36SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 1958fee21e36SBarry Smith if (!Mreuse) SETERRQ(1,1,"Submatrix passed in was not used before, cannot reuse"); 1959fee21e36SBarry Smith local = &Mreuse; 1960fee21e36SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 1961fee21e36SBarry Smith } else { 1962a0ff6018SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 1963fee21e36SBarry Smith Mreuse = *local; 1964fee21e36SBarry Smith PetscFree(local); 1965fee21e36SBarry Smith } 1966a0ff6018SBarry Smith 1967a0ff6018SBarry Smith /* 1968a0ff6018SBarry Smith m - number of local rows 1969a0ff6018SBarry Smith n - number of columns (same on all processors) 1970a0ff6018SBarry Smith rstart - first row in new global matrix generated 1971a0ff6018SBarry Smith */ 1972fee21e36SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 1973a0ff6018SBarry Smith if (call == MAT_INITIAL_MATRIX) { 1974fee21e36SBarry Smith aij = (Mat_SeqAIJ *) (Mreuse)->data; 1975a8c6a408SBarry Smith if (aij->indexshift) SETERRQ(PETSC_ERR_SUP,1,"No support for index shifted matrix"); 197600e6dbe6SBarry Smith ii = aij->i; 197700e6dbe6SBarry Smith jj = aij->j; 197800e6dbe6SBarry Smith 1979a0ff6018SBarry Smith /* 198000e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 198100e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 1982a0ff6018SBarry Smith */ 198300e6dbe6SBarry Smith 198400e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 19856a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 198600e6dbe6SBarry Smith nlocal = n/size + ((n % size) > rank); 19876a6a5d1dSBarry Smith } else { 19886a6a5d1dSBarry Smith nlocal = csize; 19896a6a5d1dSBarry Smith } 1990ca161407SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 199100e6dbe6SBarry Smith rstart = rend - nlocal; 19926a6a5d1dSBarry Smith if (rank == size - 1 && rend != n) { 19936a6a5d1dSBarry Smith SETERRQ(1,1,"Local column sizes do not add up to total number of columns"); 19946a6a5d1dSBarry Smith } 199500e6dbe6SBarry Smith 199600e6dbe6SBarry Smith /* next, compute all the lengths */ 199700e6dbe6SBarry Smith dlens = (int *) PetscMalloc( (2*m+1)*sizeof(int) );CHKPTRQ(dlens); 199800e6dbe6SBarry Smith olens = dlens + m; 199900e6dbe6SBarry Smith for ( i=0; i<m; i++ ) { 200000e6dbe6SBarry Smith jend = ii[i+1] - ii[i]; 200100e6dbe6SBarry Smith olen = 0; 200200e6dbe6SBarry Smith dlen = 0; 200300e6dbe6SBarry Smith for ( j=0; j<jend; j++ ) { 200400e6dbe6SBarry Smith if ( *jj < rstart || *jj >= rend) olen++; 200500e6dbe6SBarry Smith else dlen++; 200600e6dbe6SBarry Smith jj++; 200700e6dbe6SBarry Smith } 200800e6dbe6SBarry Smith olens[i] = olen; 200900e6dbe6SBarry Smith dlens[i] = dlen; 201000e6dbe6SBarry Smith } 201100e6dbe6SBarry Smith ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,PETSC_DECIDE,n,0,dlens,0,olens,&M);CHKERRQ(ierr); 201200e6dbe6SBarry Smith PetscFree(dlens); 2013a0ff6018SBarry Smith } else { 2014a0ff6018SBarry Smith int ml,nl; 2015a0ff6018SBarry Smith 2016a0ff6018SBarry Smith M = *newmat; 2017a0ff6018SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 2018a8c6a408SBarry Smith if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,1,"Previous matrix must be same size/layout as request"); 2019a0ff6018SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 2020c48de900SBarry Smith /* 2021c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 2022c48de900SBarry Smith rather than the slower MatSetValues(). 2023c48de900SBarry Smith */ 2024c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 2025c48de900SBarry Smith M->assembled = PETSC_FALSE; 2026a0ff6018SBarry Smith } 2027a0ff6018SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend); CHKERRQ(ierr); 2028fee21e36SBarry Smith aij = (Mat_SeqAIJ *) (Mreuse)->data; 2029a8c6a408SBarry Smith if (aij->indexshift) SETERRQ(PETSC_ERR_SUP,1,"No support for index shifted matrix"); 203000e6dbe6SBarry Smith ii = aij->i; 203100e6dbe6SBarry Smith jj = aij->j; 203200e6dbe6SBarry Smith aa = aij->a; 2033a0ff6018SBarry Smith for (i=0; i<m; i++) { 2034a0ff6018SBarry Smith row = rstart + i; 203500e6dbe6SBarry Smith nz = ii[i+1] - ii[i]; 203600e6dbe6SBarry Smith cwork = jj; jj += nz; 203700e6dbe6SBarry Smith vwork = aa; aa += nz; 20388c638d02SBarry Smith ierr = MatSetValues_MPIAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES); CHKERRQ(ierr); 2039a0ff6018SBarry Smith } 2040a0ff6018SBarry Smith 2041a0ff6018SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 2042a0ff6018SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 2043a0ff6018SBarry Smith *newmat = M; 2044fee21e36SBarry Smith 2045fee21e36SBarry Smith /* save submatrix used in processor for next request */ 2046fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 2047fee21e36SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 2048fee21e36SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 2049fee21e36SBarry Smith } 2050fee21e36SBarry Smith 2051a0ff6018SBarry Smith PetscFunctionReturn(0); 2052a0ff6018SBarry Smith } 2053