1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 10674b392bSAlexander #define TYPE AIJ 11674b392bSAlexander #define TYPE_AIJ 12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h" 13674b392bSAlexander #undef TYPE 14674b392bSAlexander #undef TYPE_AIJ 15674b392bSAlexander 16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat) 1726cec326SBarry Smith { 1826cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1926cec326SBarry Smith 2026cec326SBarry Smith PetscFunctionBegin; 2126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 2226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 2326cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 2426cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 2526cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2826cec326SBarry Smith #else 2926cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 3026cec326SBarry Smith #endif 3126cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 3226cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 3326cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 3426cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 3526cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 36674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 37674b392bSAlexander } 38674b392bSAlexander 39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat) 40674b392bSAlexander { 41674b392bSAlexander Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 42674b392bSAlexander /* Save the nonzero states of the component matrices because those are what are used to determine 43674b392bSAlexander the nonzero state of mat */ 44674b392bSAlexander PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate; 45674b392bSAlexander 46674b392bSAlexander PetscFunctionBegin; 47674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 48674b392bSAlexander PetscCall(MatSetUp_MPI_Hash(mat)); 49674b392bSAlexander aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate; 50674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 51674b392bSAlexander } 52674b392bSAlexander 53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 54674b392bSAlexander { 55674b392bSAlexander PetscFunctionBegin; 56674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 5726cec326SBarry Smith 5826cec326SBarry Smith PetscCall(PetscFree(mat->data)); 5926cec326SBarry Smith 6026cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 6126cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 6226cec326SBarry Smith 6326cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 6426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 69674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 7126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 7326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 7626cec326SBarry Smith #endif 7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 7926cec326SBarry Smith #endif 8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 8126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 8226cec326SBarry Smith #endif 8326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 8526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 8626cec326SBarry Smith #endif 8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 8826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 8926cec326SBarry Smith #endif 9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 9126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 9226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 9326cec326SBarry Smith #endif 9426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 9526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 9626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 9726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 9826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 9926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 10126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 10226cec326SBarry Smith #endif 10326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 10426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 10526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 10626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 10726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 10826cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 10926cec326SBarry Smith } 11026cec326SBarry Smith 111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 112d71ae5a4SJacob Faibussowitsch { 1138a9c020eSBarry Smith Mat B; 1148a9c020eSBarry Smith 1158a9c020eSBarry Smith PetscFunctionBegin; 1168a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 1178a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 1188a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 119501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 1203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1218a9c020eSBarry Smith } 1228a9c020eSBarry Smith 123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 124d71ae5a4SJacob Faibussowitsch { 1258a9c020eSBarry Smith Mat B; 1268a9c020eSBarry Smith 1278a9c020eSBarry Smith PetscFunctionBegin; 1288a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1298a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 130501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1328a9c020eSBarry Smith } 1338a9c020eSBarry Smith 13401bebe75SBarry Smith /*MC 13501bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 13601bebe75SBarry Smith 13711a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 13811a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 13911a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 14001bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14101bebe75SBarry Smith the above preallocation routines for simplicity. 14201bebe75SBarry Smith 14327430b45SBarry Smith Options Database Key: 14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 14501bebe75SBarry Smith 14611a5261eSBarry Smith Developer Note: 1472ef1f0ffSBarry Smith Level: beginner 1482ef1f0ffSBarry Smith 14911a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 15001bebe75SBarry Smith enough exist. 15101bebe75SBarry Smith 1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 15301bebe75SBarry Smith M*/ 15401bebe75SBarry Smith 15501bebe75SBarry Smith /*MC 15601bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 15701bebe75SBarry Smith 15811a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 15911a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 16011a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 16101bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 16201bebe75SBarry Smith the above preallocation routines for simplicity. 16301bebe75SBarry Smith 16427430b45SBarry Smith Options Database Key: 16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 16601bebe75SBarry Smith 16701bebe75SBarry Smith Level: beginner 16801bebe75SBarry Smith 1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 17001bebe75SBarry Smith M*/ 17101bebe75SBarry Smith 172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 173d71ae5a4SJacob Faibussowitsch { 174f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 175f74ef234SStefano Zampini 176f74ef234SStefano Zampini PetscFunctionBegin; 177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 178b470e4b4SRichard Tran Mills A->boundtocpu = flg; 179f74ef234SStefano Zampini #endif 1801baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1811baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1823120d049SRichard Tran Mills 1833120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1843120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1853120d049SRichard Tran Mills * to differ from the parent matrix. */ 1861baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1871baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189f74ef234SStefano Zampini } 190f74ef234SStefano Zampini 191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 192d71ae5a4SJacob Faibussowitsch { 19326bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 19426bda2c4Sstefano_zampini 19526bda2c4Sstefano_zampini PetscFunctionBegin; 19646533700Sstefano_zampini if (mat->A) { 1979566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1989566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 19946533700Sstefano_zampini } 2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20126bda2c4Sstefano_zampini } 20226bda2c4Sstefano_zampini 203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 204d71ae5a4SJacob Faibussowitsch { 20527d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 20627d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 20727d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 20827d4218bSShri Abhyankar const PetscInt *ia, *ib; 209ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 21027d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 21127d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 21227d4218bSShri Abhyankar 21327d4218bSShri Abhyankar PetscFunctionBegin; 214f4259b30SLisandro Dalcin *keptrows = NULL; 215ce496241SStefano Zampini 21627d4218bSShri Abhyankar ia = a->i; 21727d4218bSShri Abhyankar ib = b->i; 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 22027d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22127d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22227d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22327d4218bSShri Abhyankar if (!na && !nb) { 22427d4218bSShri Abhyankar cnt++; 22527d4218bSShri Abhyankar goto ok1; 22627d4218bSShri Abhyankar } 227ce496241SStefano Zampini aa = aav + ia[i]; 22827d4218bSShri Abhyankar for (j = 0; j < na; j++) { 22927d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 23027d4218bSShri Abhyankar } 2318e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23227d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23327d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar cnt++; 23627d4218bSShri Abhyankar ok1:; 23727d4218bSShri Abhyankar } 238462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 239ce496241SStefano Zampini if (!n0rows) { 2409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243ce496241SStefano Zampini } 2449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 24527d4218bSShri Abhyankar cnt = 0; 24627d4218bSShri Abhyankar for (i = 0; i < m; i++) { 24727d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 24827d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 24927d4218bSShri Abhyankar if (!na && !nb) continue; 250ce496241SStefano Zampini aa = aav + ia[i]; 25127d4218bSShri Abhyankar for (j = 0; j < na; j++) { 25227d4218bSShri Abhyankar if (aa[j] != 0.0) { 25327d4218bSShri Abhyankar rows[cnt++] = rstart + i; 25427d4218bSShri Abhyankar goto ok2; 25527d4218bSShri Abhyankar } 25627d4218bSShri Abhyankar } 2578e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 25827d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 25927d4218bSShri Abhyankar if (bb[j] != 0.0) { 26027d4218bSShri Abhyankar rows[cnt++] = rstart + i; 26127d4218bSShri Abhyankar goto ok2; 26227d4218bSShri Abhyankar } 26327d4218bSShri Abhyankar } 26427d4218bSShri Abhyankar ok2:; 26527d4218bSShri Abhyankar } 2669566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27027d4218bSShri Abhyankar } 27127d4218bSShri Abhyankar 272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 273d71ae5a4SJacob Faibussowitsch { 27499e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 27594342113SStefano Zampini PetscBool cong; 27699e65526SBarry Smith 27799e65526SBarry Smith PetscFunctionBegin; 2789566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 27994342113SStefano Zampini if (Y->assembled && cong) { 2809566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 28199e65526SBarry Smith } else { 2829566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 28399e65526SBarry Smith } 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28599e65526SBarry Smith } 28699e65526SBarry Smith 287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 288d71ae5a4SJacob Faibussowitsch { 289f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 290f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 291f1f41ecbSJed Brown 292f1f41ecbSJed Brown PetscFunctionBegin; 2930298fd71SBarry Smith *zrows = NULL; 2949566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2959566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 296f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299f1f41ecbSJed Brown } 300f1f41ecbSJed Brown 301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 302d71ae5a4SJacob Faibussowitsch { 3030716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 304a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 3050716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 3060716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 3070716a85fSBarry Smith PetscReal *work; 308ce496241SStefano Zampini const PetscScalar *dummy; 3090716a85fSBarry Smith 3100716a85fSBarry Smith PetscFunctionBegin; 3119566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 3129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 3139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 3149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 3159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 3169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 319ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 320857cbf51SRichard Tran Mills } else if (type == NORM_1) { 321ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 322ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 323857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 324ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 325ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 326857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 327ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 328ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 329857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 330ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 331ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 332857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 333857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 334*e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3350716a85fSBarry Smith } else { 336*e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3370716a85fSBarry Smith } 3389566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 339857cbf51SRichard Tran Mills if (type == NORM_2) { 340a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 341857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 342a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3430716a85fSBarry Smith } 3443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3450716a85fSBarry Smith } 3460716a85fSBarry Smith 347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 348d71ae5a4SJacob Faibussowitsch { 349e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 350e52d2c62SBarry Smith IS sis, gis; 351e52d2c62SBarry Smith const PetscInt *isis, *igis; 352e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 353e52d2c62SBarry Smith 354e52d2c62SBarry Smith PetscFunctionBegin; 3559566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3569566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3579566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3589566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 361e52d2c62SBarry Smith 3629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3639566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 365e52d2c62SBarry Smith n = ngis + nsis; 3669566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3679566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 368e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 370e52d2c62SBarry Smith 3719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3729566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376e52d2c62SBarry Smith } 377e52d2c62SBarry Smith 378dd6ea824SBarry Smith /* 3790f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3810f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 38372fa4726SStefano Zampini has an order N integer array but is fast to access. 3849e25ed09SBarry Smith */ 385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 386d71ae5a4SJacob Faibussowitsch { 38744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 388d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 389dbb450caSBarry Smith 3903a40ed3dSBarry Smith PetscFunctionBegin; 39108401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 393eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 394c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 395b1fc9764SSatish Balay #else 3969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 397905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 398b1fc9764SSatish Balay #endif 3993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4009e25ed09SBarry Smith } 4019e25ed09SBarry Smith 402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 403a8f51744SPierre Jolivet do { \ 404db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 405db4deed7SKarl Rupp else high1 = nrow1; \ 406fd3458f5SBarry Smith lastcol1 = col; \ 407fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 408fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 409fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 410fd3458f5SBarry Smith else low1 = t; \ 411ba4e3ef2SSatish Balay } \ 412fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 413fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 414fd3458f5SBarry Smith if (rp1[_i] == col) { \ 4150c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4160c0d7e18SFande Kong ap1[_i] += value; \ 4170c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 4180c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4199371c9d4SSatish Balay } else ap1[_i] = value; \ 42030770e4dSSatish Balay goto a_noinsert; \ 4210520107fSSatish Balay } \ 4220520107fSSatish Balay } \ 4239371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4249371c9d4SSatish Balay low1 = 0; \ 4259371c9d4SSatish Balay high1 = nrow1; \ 4269371c9d4SSatish Balay goto a_noinsert; \ 4279371c9d4SSatish Balay } \ 4289371c9d4SSatish Balay if (nonew == 1) { \ 4299371c9d4SSatish Balay low1 = 0; \ 4309371c9d4SSatish Balay high1 = nrow1; \ 4319371c9d4SSatish Balay goto a_noinsert; \ 4329371c9d4SSatish Balay } \ 43308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 434fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4359371c9d4SSatish Balay N = nrow1++ - 1; \ 4369371c9d4SSatish Balay a->nz++; \ 4379371c9d4SSatish Balay high1++; \ 4380520107fSSatish Balay /* shift up all the later entries in this row */ \ 4399566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4409566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 441fd3458f5SBarry Smith rp1[_i] = col; \ 442fd3458f5SBarry Smith ap1[_i] = value; \ 44330770e4dSSatish Balay a_noinsert:; \ 444fd3458f5SBarry Smith ailen[row] = nrow1; \ 445a8f51744SPierre Jolivet } while (0) 4460a198c4cSBarry Smith 447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 448a8f51744SPierre Jolivet do { \ 449db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 450db4deed7SKarl Rupp else high2 = nrow2; \ 451fd3458f5SBarry Smith lastcol2 = col; \ 452fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 453fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 454fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 455fd3458f5SBarry Smith else low2 = t; \ 456ba4e3ef2SSatish Balay } \ 457fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 458fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 459fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4600c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4610c0d7e18SFande Kong ap2[_i] += value; \ 4620c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4639371c9d4SSatish Balay } else ap2[_i] = value; \ 46430770e4dSSatish Balay goto b_noinsert; \ 46530770e4dSSatish Balay } \ 46630770e4dSSatish Balay } \ 4679371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4689371c9d4SSatish Balay low2 = 0; \ 4699371c9d4SSatish Balay high2 = nrow2; \ 4709371c9d4SSatish Balay goto b_noinsert; \ 4719371c9d4SSatish Balay } \ 4729371c9d4SSatish Balay if (nonew == 1) { \ 4739371c9d4SSatish Balay low2 = 0; \ 4749371c9d4SSatish Balay high2 = nrow2; \ 4759371c9d4SSatish Balay goto b_noinsert; \ 4769371c9d4SSatish Balay } \ 47708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 478fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4799371c9d4SSatish Balay N = nrow2++ - 1; \ 4809371c9d4SSatish Balay b->nz++; \ 4819371c9d4SSatish Balay high2++; \ 48230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4839566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4849566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 485fd3458f5SBarry Smith rp2[_i] = col; \ 486fd3458f5SBarry Smith ap2[_i] = value; \ 48730770e4dSSatish Balay b_noinsert:; \ 488fd3458f5SBarry Smith bilen[row] = nrow2; \ 489a8f51744SPierre Jolivet } while (0) 49030770e4dSSatish Balay 491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 492d71ae5a4SJacob Faibussowitsch { 4932fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4942fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4952fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 496fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4972fd7e33dSBarry Smith 4982fd7e33dSBarry Smith PetscFunctionBegin; 4992fd7e33dSBarry Smith /* code only works for square matrices A */ 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 5029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 5032fd7e33dSBarry Smith row = row - diag; 5042fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 5052fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 5062fd7e33dSBarry Smith } 507fff043a9SJunchao Zhang if (l) { 5089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 5109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 511fff043a9SJunchao Zhang } 5122fd7e33dSBarry Smith 5132fd7e33dSBarry Smith /* diagonal part */ 514fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 5159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 51657508eceSPierre Jolivet PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row])); 5179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 518fff043a9SJunchao Zhang } 5192fd7e33dSBarry Smith 5202fd7e33dSBarry Smith /* right of diagonal part */ 521fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 525fff043a9SJunchao Zhang } 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5272fd7e33dSBarry Smith } 5282fd7e33dSBarry Smith 529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 530d71ae5a4SJacob Faibussowitsch { 53144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 532071fcb05SBarry Smith PetscScalar value = 0.0; 533d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 534d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 535ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5368a729477SBarry Smith 5370520107fSSatish Balay /* Some Variables required in the macro */ 5384ee7247eSSatish Balay Mat A = aij->A; 5394ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 54057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 541ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 54230770e4dSSatish Balay Mat B = aij->B; 54330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 544d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 545ce496241SStefano Zampini MatScalar *aa, *ba; 546fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5478d76821aSHong Zhang PetscInt nonew; 548a77337e4SBarry Smith MatScalar *ap1, *ap2; 5494ee7247eSSatish Balay 5503a40ed3dSBarry Smith PetscFunctionBegin; 5519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5538a729477SBarry Smith for (i = 0; i < m; i++) { 5545ef9f2a5SBarry Smith if (im[i] < 0) continue; 55508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5564b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5574b0e389bSBarry Smith row = im[i] - rstart; 558fd3458f5SBarry Smith lastcol1 = -1; 5598e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5608e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 561fd3458f5SBarry Smith rmax1 = aimax[row]; 562fd3458f5SBarry Smith nrow1 = ailen[row]; 563fd3458f5SBarry Smith low1 = 0; 564fd3458f5SBarry Smith high1 = nrow1; 565fd3458f5SBarry Smith lastcol2 = -1; 5668e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5678e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 568fd3458f5SBarry Smith rmax2 = bimax[row]; 569d498b1e9SBarry Smith nrow2 = bilen[row]; 570fd3458f5SBarry Smith low2 = 0; 571fd3458f5SBarry Smith high2 = nrow2; 572fd3458f5SBarry Smith 5731eb62cbbSBarry Smith for (j = 0; j < n; j++) { 574071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 575c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 576fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 577fd3458f5SBarry Smith col = in[j] - cstart; 5788d76821aSHong Zhang nonew = a->nonew; 579d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 580f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 581f7d195e4SLawrence Mitchell continue; 582f7d195e4SLawrence Mitchell } else { 583f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 584227d817aSBarry Smith if (mat->was_assembled) { 58548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 587eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 588fa46199cSSatish Balay col--; 589b1fc9764SSatish Balay #else 590905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 591b1fc9764SSatish Balay #endif 592f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 593eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); /* Change aij->B from reduced/local format to expanded/global format */ 5944b0e389bSBarry Smith col = in[j]; 5959bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 596f9508a3cSSatish Balay B = aij->B; 597f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5989371c9d4SSatish Balay bimax = b->imax; 5999371c9d4SSatish Balay bi = b->i; 6009371c9d4SSatish Balay bilen = b->ilen; 6019371c9d4SSatish Balay bj = b->j; 6029371c9d4SSatish Balay ba = b->a; 603cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 604cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 605d498b1e9SBarry Smith rmax2 = bimax[row]; 606d498b1e9SBarry Smith nrow2 = bilen[row]; 607d498b1e9SBarry Smith low2 = 0; 608d498b1e9SBarry Smith high2 = nrow2; 609d0f46423SBarry Smith bm = aij->B->rmap->n; 610f9508a3cSSatish Balay ba = b->a; 611d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 612f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 6139566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 61498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 6150587a0fcSBarry Smith } 616c48de900SBarry Smith } else col = in[j]; 6178d76821aSHong Zhang nonew = b->nonew; 618d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6191eb62cbbSBarry Smith } 6201eb62cbbSBarry Smith } 6215ef9f2a5SBarry Smith } else { 62228b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 62390f02eecSBarry Smith if (!aij->donotstash) { 6245080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 625d36fbae8SSatish Balay if (roworiented) { 6268e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 627d36fbae8SSatish Balay } else { 6288e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6294b0e389bSBarry Smith } 6301eb62cbbSBarry Smith } 6318a729477SBarry Smith } 63290f02eecSBarry Smith } 6335519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6368a729477SBarry Smith } 6378a729477SBarry Smith 6382b08fdbeSandi selinger /* 639904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6402b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 641904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6422b08fdbeSandi selinger */ 643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 644d71ae5a4SJacob Faibussowitsch { 645904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 646904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6474cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 648904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 649904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 650904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 651904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 652904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6536dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 654904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 655904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 656904d1e70Sandi selinger 657904d1e70Sandi selinger PetscFunctionBegin; 658904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 659904d1e70Sandi selinger for (j = 0; j < am; j++) { 660904d1e70Sandi selinger dnz = onz = 0; 661904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6626dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 663904d1e70Sandi selinger /* If column is in the diagonal */ 664904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 665904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 666904d1e70Sandi selinger dnz++; 667904d1e70Sandi selinger } else { /* off-diagonal entries */ 668904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 669904d1e70Sandi selinger onz++; 670904d1e70Sandi selinger } 671904d1e70Sandi selinger } 672904d1e70Sandi selinger ailen[j] = dnz; 673904d1e70Sandi selinger bilen[j] = onz; 674904d1e70Sandi selinger } 6753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 676904d1e70Sandi selinger } 677904d1e70Sandi selinger 678904d1e70Sandi selinger /* 679904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 680904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6811de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6821de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6831de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 684904d1e70Sandi selinger */ 685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 686d71ae5a4SJacob Faibussowitsch { 6873a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6883a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6894cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 690f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6913a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6923a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6933a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6943a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6953a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6966dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6971de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 698904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 699904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 7003a063d27Sandi selinger 7013a063d27Sandi selinger PetscFunctionBegin; 7023a063d27Sandi selinger /* Iterate over all rows of the matrix */ 7033a063d27Sandi selinger for (j = 0; j < am; j++) { 704904d1e70Sandi selinger dnz_row = onz_row = 0; 705904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 706904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 707e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 708e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 709ae8e66a0Sandi selinger /* If column is in the diagonal */ 7103a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 711904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 712904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 713904d1e70Sandi selinger dnz_row++; 714ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 715904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 716904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 717904d1e70Sandi selinger onz_row++; 7183a063d27Sandi selinger } 7193a063d27Sandi selinger } 720904d1e70Sandi selinger ailen[j] = dnz_row; 721904d1e70Sandi selinger bilen[j] = onz_row; 7223a063d27Sandi selinger } 7233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7243a063d27Sandi selinger } 7253a063d27Sandi selinger 726ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 727d71ae5a4SJacob Faibussowitsch { 728b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 729d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 730d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 731b49de8d1SLois Curfman McInnes 7323a40ed3dSBarry Smith PetscFunctionBegin; 733b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 73454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 73554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 73685835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 737b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 738b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 73954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 74054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 741b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 742b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7439566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 744fa852ad4SSatish Balay } else { 74548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 746aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 747eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 748fa46199cSSatish Balay col--; 749b1fc9764SSatish Balay #else 750905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 751b1fc9764SSatish Balay #endif 752e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 75348a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 754b49de8d1SLois Curfman McInnes } 755b49de8d1SLois Curfman McInnes } 756b49de8d1SLois Curfman McInnes } 7573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 758b49de8d1SLois Curfman McInnes } 759bc5ccf88SSatish Balay 760ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 761d71ae5a4SJacob Faibussowitsch { 762bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 763b1d57f15SBarry Smith PetscInt nstash, reallocs; 764bc5ccf88SSatish Balay 765bc5ccf88SSatish Balay PetscFunctionBegin; 7663ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 767bc5ccf88SSatish Balay 7689566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7699566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7709566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772bc5ccf88SSatish Balay } 773bc5ccf88SSatish Balay 774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 775d71ae5a4SJacob Faibussowitsch { 776bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 777b1d57f15SBarry Smith PetscMPIInt n; 778b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 779e44c0bd4SBarry Smith PetscInt *row, *col; 780ace3abfcSBarry Smith PetscBool other_disassembled; 78187828ca2SBarry Smith PetscScalar *val; 782bc5ccf88SSatish Balay 78391c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7846e111a19SKarl Rupp 785bc5ccf88SSatish Balay PetscFunctionBegin; 7864cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 787a2d1c673SSatish Balay while (1) { 7889566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 789a2d1c673SSatish Balay if (!flg) break; 790a2d1c673SSatish Balay 791bc5ccf88SSatish Balay for (i = 0; i < n;) { 792bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7932205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7942205254eSKarl Rupp if (row[j] != rstart) break; 7952205254eSKarl Rupp } 796bc5ccf88SSatish Balay if (j < n) ncols = j - i; 797bc5ccf88SSatish Balay else ncols = n - i; 798bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7999566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 800bc5ccf88SSatish Balay i = j; 801bc5ccf88SSatish Balay } 802bc5ccf88SSatish Balay } 8039566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 804bc5ccf88SSatish Balay } 8058c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 806c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 8079ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 8089ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 8099566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 8109566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 8119ecce9b1SRichard Tran Mills } 812e2cf4d64SStefano Zampini #endif 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 815bc5ccf88SSatish Balay 816bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 817071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 818bc5ccf88SSatish Balay /* 819bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 820bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 821bc5ccf88SSatish Balay */ 822bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 823462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 82435cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 825eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 826ad59fb31SSatish Balay } 827ad59fb31SSatish Balay } 82848a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8299566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8308c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 831c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 832e2cf4d64SStefano Zampini #endif 8339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 835bc5ccf88SSatish Balay 8369566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8372205254eSKarl Rupp 838f4259b30SLisandro Dalcin aij->rowvalues = NULL; 839a30b2313SHong Zhang 8409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 841e56f5c9eSBarry Smith 8424f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 843f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 844e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 845462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 846e56f5c9eSBarry Smith } 8478c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 848c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 849e2cf4d64SStefano Zampini #endif 8503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 851bc5ccf88SSatish Balay } 852bc5ccf88SSatish Balay 853ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 854d71ae5a4SJacob Faibussowitsch { 85544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8563a40ed3dSBarry Smith 8573a40ed3dSBarry Smith PetscFunctionBegin; 8589566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8599566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8611eb62cbbSBarry Smith } 8621eb62cbbSBarry Smith 863ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 864d71ae5a4SJacob Faibussowitsch { 8651b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8661b1dd7adSMatthew G. Knepley PetscInt *lrows; 8676e520ac8SStefano Zampini PetscInt r, len; 8689939a2d1SBarry Smith PetscBool cong; 8691eb62cbbSBarry Smith 8703a40ed3dSBarry Smith PetscFunctionBegin; 8716e520ac8SStefano Zampini /* get locally owned rows */ 8729566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8739566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 874dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 87597b48c8fSBarry Smith if (x && b) { 8761b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8771b1dd7adSMatthew G. Knepley PetscScalar *bb; 8781b1dd7adSMatthew G. Knepley 87928b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8809566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8819566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8821b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 88597b48c8fSBarry Smith } 886a92ad425SStefano Zampini 887a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8889566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8899566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 890a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 891a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 892a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 893a92ad425SStefano Zampini PetscInt nnwA, nnwB; 894a92ad425SStefano Zampini PetscBool nnzA, nnzB; 895a92ad425SStefano Zampini 896a92ad425SStefano Zampini nnwA = aijA->nonew; 897a92ad425SStefano Zampini nnwB = aijB->nonew; 898a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 899a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 900a92ad425SStefano Zampini if (!nnzA) { 9019566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 902a92ad425SStefano Zampini aijA->nonew = 0; 903a92ad425SStefano Zampini } 904a92ad425SStefano Zampini if (!nnzB) { 9059566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 906a92ad425SStefano Zampini aijB->nonew = 0; 907a92ad425SStefano Zampini } 908a92ad425SStefano Zampini /* Must zero here before the next loop */ 9099566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9109566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9111b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 9121b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 913a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 9149566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 915e2d53e46SBarry Smith } 916a92ad425SStefano Zampini aijA->nonew = nnwA; 917a92ad425SStefano Zampini aijB->nonew = nnwB; 9186eb55b6aSBarry Smith } else { 9199566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9209566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9216eb55b6aSBarry Smith } 9229566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9254f9cfa9eSBarry Smith 9269939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 927f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9289939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 929462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9309939a2d1SBarry Smith } 9313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9321eb62cbbSBarry Smith } 9331eb62cbbSBarry Smith 934ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 935d71ae5a4SJacob Faibussowitsch { 9369c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9376497c311SBarry Smith PetscInt n = A->rmap->n; 938131c27b5Sprj- PetscInt i, j, r, m, len = 0; 93954bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 940131c27b5Sprj- PetscMPIInt p = 0; 94154bd4135SMatthew G. Knepley PetscSFNode *rrows; 94254bd4135SMatthew G. Knepley PetscSF sf; 9439c7c4993SBarry Smith const PetscScalar *xx; 944fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 945564f14d6SBarry Smith Vec xmask, lmask; 946564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 947564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 948564f14d6SBarry Smith PetscScalar *aa; 9499c7c4993SBarry Smith 9509c7c4993SBarry Smith PetscFunctionBegin; 95154bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 95354bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 95554bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 95654bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 957aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9585ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9599566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9605ba17502SJed Brown } 96154bd4135SMatthew G. Knepley rrows[r].rank = p; 96254bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9639c7c4993SBarry Smith } 9649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 96654bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9679566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9689566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9699566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 97054bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9719371c9d4SSatish Balay for (r = 0; r < n; ++r) 9729371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 973564f14d6SBarry Smith /* zero diagonal part of matrix */ 9749566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9754cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9769566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9779566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9789566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 97954bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 984a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 985a92ad425SStefano Zampini PetscBool cong; 986a92ad425SStefano Zampini 9879566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 98828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9909566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9929566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 993377aa5a1SBarry Smith } 9949566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9954cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 997564f14d6SBarry Smith ii = aij->i; 9988e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 999564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 1000564f14d6SBarry Smith if (aij->compressedrow.use) { 1001564f14d6SBarry Smith m = aij->compressedrow.nrows; 1002564f14d6SBarry Smith ii = aij->compressedrow.i; 1003564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 1004564f14d6SBarry Smith for (i = 0; i < m; i++) { 1005564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1006564f14d6SBarry Smith aj = aij->j + ii[i]; 1007fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1008564f14d6SBarry Smith 1009564f14d6SBarry Smith for (j = 0; j < n; j++) { 101025266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1011377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 1012564f14d6SBarry Smith *aa = 0.0; 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith aa++; 1015564f14d6SBarry Smith aj++; 1016564f14d6SBarry Smith } 1017564f14d6SBarry Smith ridx++; 1018564f14d6SBarry Smith } 1019564f14d6SBarry Smith } else { /* do not use compressed row format */ 1020564f14d6SBarry Smith m = l->B->rmap->n; 1021564f14d6SBarry Smith for (i = 0; i < m; i++) { 1022564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1023564f14d6SBarry Smith aj = aij->j + ii[i]; 1024fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1025564f14d6SBarry Smith for (j = 0; j < n; j++) { 102625266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1027377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1028564f14d6SBarry Smith *aa = 0.0; 1029564f14d6SBarry Smith } 1030564f14d6SBarry Smith aa++; 1031564f14d6SBarry Smith aj++; 1032564f14d6SBarry Smith } 1033564f14d6SBarry Smith } 1034564f14d6SBarry Smith } 1035a92ad425SStefano Zampini if (x && b) { 10369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1038377aa5a1SBarry Smith } 10399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10429566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10434f9cfa9eSBarry Smith 10444f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1045f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10464f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1047462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10484f9cfa9eSBarry Smith } 10493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10509c7c4993SBarry Smith } 10519c7c4993SBarry Smith 1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1053d71ae5a4SJacob Faibussowitsch { 1054416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1055b1d57f15SBarry Smith PetscInt nt; 105619b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1057416022c9SBarry Smith 10583a40ed3dSBarry Smith PetscFunctionBegin; 10599566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 106008401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1062296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1064296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10661eb62cbbSBarry Smith } 10671eb62cbbSBarry Smith 1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1069d71ae5a4SJacob Faibussowitsch { 1070bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1071bd0c2dcbSBarry Smith 1072bd0c2dcbSBarry Smith PetscFunctionBegin; 10739566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1075bd0c2dcbSBarry Smith } 1076bd0c2dcbSBarry Smith 1077ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1078d71ae5a4SJacob Faibussowitsch { 1079416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 108001ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10813a40ed3dSBarry Smith 10823a40ed3dSBarry Smith PetscFunctionBegin; 10839566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10849566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10859566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10869566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1088da3a660dSBarry Smith } 1089da3a660dSBarry Smith 1090ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1091d71ae5a4SJacob Faibussowitsch { 1092416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1093da3a660dSBarry Smith 10943a40ed3dSBarry Smith PetscFunctionBegin; 1095da3a660dSBarry Smith /* do nondiagonal part */ 10969566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1097da3a660dSBarry Smith /* do local part */ 10989566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10999613dc34SJunchao Zhang /* add partial results together */ 11009566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1103da3a660dSBarry Smith } 1104da3a660dSBarry Smith 1105ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1106d71ae5a4SJacob Faibussowitsch { 11074f423910Svictorle MPI_Comm comm; 1108ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1109ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1110cd0d46ebSvictorle IS Me, Notme; 1111b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 111254d735aeSStefano Zampini PetscBool lf; 1113b1d57f15SBarry Smith PetscMPIInt size; 1114cd0d46ebSvictorle 1115cd0d46ebSvictorle PetscFunctionBegin; 111642e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 11179566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 1118462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11193ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11223ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 112342e5f5b4Svictorle 11247dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11259566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11269566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1128cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1129cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11309566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11319566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11329566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 113366501d38Svictorle Aoff = Aoffs[0]; 11349566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 113566501d38Svictorle Boff = Boffs[0]; 11369566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11379566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11389566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11419566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1143cd0d46ebSvictorle } 1144cd0d46ebSvictorle 1145ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1146d71ae5a4SJacob Faibussowitsch { 1147416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1148da3a660dSBarry Smith 11493a40ed3dSBarry Smith PetscFunctionBegin; 1150da3a660dSBarry Smith /* do nondiagonal part */ 11519566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1152da3a660dSBarry Smith /* do local part */ 11539566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11549613dc34SJunchao Zhang /* add partial results together */ 11559566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11569566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1158da3a660dSBarry Smith } 1159da3a660dSBarry Smith 11601eb62cbbSBarry Smith /* 11611eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11621eb62cbbSBarry Smith diagonal block 11631eb62cbbSBarry Smith */ 1164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1165d71ae5a4SJacob Faibussowitsch { 1166416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11673a40ed3dSBarry Smith 11683a40ed3dSBarry Smith PetscFunctionBegin; 116908401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1170aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11719566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11731eb62cbbSBarry Smith } 11741eb62cbbSBarry Smith 1175ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1176d71ae5a4SJacob Faibussowitsch { 1177052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11783a40ed3dSBarry Smith 11793a40ed3dSBarry Smith PetscFunctionBegin; 11809566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11819566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1183052efed2SBarry Smith } 1184052efed2SBarry Smith 1185ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1186d71ae5a4SJacob Faibussowitsch { 11878e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11888e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11898e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11903ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11912e5835c6SStefano Zampini const PetscScalar *aa, *ba; 119217a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 119317a3732bSBarry Smith PetscInt64 nz, hnz; 11943ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11953ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11963ea6fe3dSLisandro Dalcin PetscScalar *matvals; 119717a3732bSBarry Smith PetscMPIInt rank; 11988e2fed03SBarry Smith 11998e2fed03SBarry Smith PetscFunctionBegin; 12009566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 12013ea6fe3dSLisandro Dalcin 12023ea6fe3dSLisandro Dalcin M = mat->rmap->N; 12033ea6fe3dSLisandro Dalcin N = mat->cmap->N; 12043ea6fe3dSLisandro Dalcin m = mat->rmap->n; 12053ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 12063ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 12078e2fed03SBarry Smith nz = A->nz + B->nz; 12083ea6fe3dSLisandro Dalcin 12093ea6fe3dSLisandro Dalcin /* write matrix header */ 12100700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 12119371c9d4SSatish Balay header[1] = M; 12129371c9d4SSatish Balay header[2] = N; 121317a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 121417a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 1215835f2295SStefano Zampini if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12178e2fed03SBarry Smith 12183ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12203ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12219566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12229566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12238e2fed03SBarry Smith 12243ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12263ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12273ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12283ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12293ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12308e2fed03SBarry Smith } 12319371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12329371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12338e2fed03SBarry Smith } 123417a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12369566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12378e2fed03SBarry Smith 12383ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12423ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12433ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12443ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12452e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12468e2fed03SBarry Smith } 12479371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12489371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12498e2fed03SBarry Smith } 12509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 125217a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12539566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12549566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12558e2fed03SBarry Smith 12563ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12579566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12598e2fed03SBarry Smith } 12608e2fed03SBarry Smith 12619804daf3SBarry Smith #include <petscdraw.h> 1262ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1263d71ae5a4SJacob Faibussowitsch { 126444a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 126532dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1266ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1267b0a32e0cSBarry Smith PetscViewer sviewer; 1268f3ef73ceSBarry Smith PetscViewerFormat format; 1269416022c9SBarry Smith 12703a40ed3dSBarry Smith PetscFunctionBegin; 12719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 127432077d6dSBarry Smith if (iascii) { 12759566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1276ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 12771690c2aeSBarry Smith PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1280835f2295SStefano Zampini for (i = 0; i < size; i++) { 1281ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1282ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1283ef5fdb51SBarry Smith navg += nz[i]; 1284ef5fdb51SBarry Smith } 12859566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1286ef5fdb51SBarry Smith navg = navg / size; 12879566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1289ef5fdb51SBarry Smith } 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1291456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12924e220ebcSLois Curfman McInnes MatInfo info; 12936335e310SSatish Balay PetscInt *inodes = NULL; 1294923f20ffSKris Buschelman 12959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12969566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12979566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1299923f20ffSKris Buschelman if (!inodes) { 13009371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1301835f2295SStefano Zampini info.memory)); 13026831982aSBarry Smith } else { 1303835f2295SStefano Zampini PetscCall( 1304835f2295SStefano Zampini PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory)); 13056831982aSBarry Smith } 13069566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 13079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13089566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13109566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13139566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1315fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1316923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13179566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1318923f20ffSKris Buschelman if (inodes) { 13199566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1320d38fa0fbSBarry Smith } else { 13219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1322d38fa0fbSBarry Smith } 13233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13244aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132608480c60SBarry Smith } 13278e2fed03SBarry Smith } else if (isbinary) { 13288e2fed03SBarry Smith if (size == 1) { 13299566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13309566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13318e2fed03SBarry Smith } else { 13329566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13338e2fed03SBarry Smith } 13343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 133571e56450SStefano Zampini } else if (iascii && size == 1) { 13369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13379566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13390f5bd95cSBarry Smith } else if (isdraw) { 1340b0a32e0cSBarry Smith PetscDraw draw; 1341ace3abfcSBarry Smith PetscBool isnull; 13429566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13439566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13443ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 134519bcc07fSBarry Smith } 134619bcc07fSBarry Smith 134771e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 134871e56450SStefano Zampini Mat A = NULL, Av; 134971e56450SStefano Zampini IS isrow, iscol; 13502ee70a88SLois Curfman McInnes 13519566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13529566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13539566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13549566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 135571e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 135671e56450SStefano Zampini /* 135771e56450SStefano Zampini Mat *AA, A = NULL, Av; 135871e56450SStefano Zampini IS isrow,iscol; 135971e56450SStefano Zampini 13609566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13619566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13629566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1363dd400576SPatrick Sanan if (rank == 0) { 13649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 136571e56450SStefano Zampini A = AA[0]; 136671e56450SStefano Zampini Av = AA[0]; 136795373324SBarry Smith } 13689566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136971e56450SStefano Zampini */ 13709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 137255843e3eSBarry Smith /* 137355843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1374b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 137555843e3eSBarry Smith */ 13769566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1377dd400576SPatrick Sanan if (rank == 0) { 137848a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13799566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 138095373324SBarry Smith } 13819566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 138395373324SBarry Smith } 13843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13851eb62cbbSBarry Smith } 13861eb62cbbSBarry Smith 1387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1388d71ae5a4SJacob Faibussowitsch { 1389ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1390416022c9SBarry Smith 13913a40ed3dSBarry Smith PetscFunctionBegin; 13929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13959566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 139648a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1398416022c9SBarry Smith } 1399416022c9SBarry Smith 1400ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1401d71ae5a4SJacob Faibussowitsch { 140244a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1403f4259b30SLisandro Dalcin Vec bb1 = NULL; 1404ace3abfcSBarry Smith PetscBool hasop; 14058a729477SBarry Smith 14063a40ed3dSBarry Smith PetscFunctionBegin; 1407a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 14089566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1410a2b30743SBarry Smith } 1411a2b30743SBarry Smith 141248a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14134e980039SJed Brown 1414c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1415da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14172798e883SHong Zhang its--; 1418da3a660dSBarry Smith } 14192798e883SHong Zhang 14202798e883SHong Zhang while (its--) { 14219566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14229566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14232798e883SHong Zhang 1424c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14259566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14269566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14272798e883SHong Zhang 1428c14dc6b6SHong Zhang /* local sweep */ 14299566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14302798e883SHong Zhang } 14313a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1432da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14339566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14342798e883SHong Zhang its--; 1435da3a660dSBarry Smith } 14362798e883SHong Zhang while (its--) { 14379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14389566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14392798e883SHong Zhang 1440c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14419566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14429566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1443c14dc6b6SHong Zhang 1444c14dc6b6SHong Zhang /* local sweep */ 14459566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14462798e883SHong Zhang } 14473a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1448da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14499566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14502798e883SHong Zhang its--; 1451da3a660dSBarry Smith } 14522798e883SHong Zhang while (its--) { 14539566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14549566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14552798e883SHong Zhang 1456c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14579566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14589566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14592798e883SHong Zhang 1460c14dc6b6SHong Zhang /* local sweep */ 14619566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14622798e883SHong Zhang } 1463a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1464a7420bb7SBarry Smith Vec xx1; 1465a7420bb7SBarry Smith 14669566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1468a7420bb7SBarry Smith 14699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1471a7420bb7SBarry Smith if (!mat->diag) { 14729566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14739566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1474a7420bb7SBarry Smith } 14759566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1476bd0c2dcbSBarry Smith if (hasop) { 14779566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1478bd0c2dcbSBarry Smith } else { 14799566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1480bd0c2dcbSBarry Smith } 14819566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1482887ee2caSBarry Smith 14839566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1484a7420bb7SBarry Smith 1485a7420bb7SBarry Smith /* local sweep */ 14869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14879566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1489ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1490c14dc6b6SHong Zhang 14919566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1492a0808db4SHong Zhang 14937b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14958a729477SBarry Smith } 1496a66be287SLois Curfman McInnes 1497ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1498d71ae5a4SJacob Faibussowitsch { 149972e6a0cfSJed Brown Mat aA, aB, Aperm; 150072e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 150172e6a0cfSJed Brown PetscScalar *aa, *ba; 150272e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 150372e6a0cfSJed Brown PetscSF rowsf, sf; 15040298fd71SBarry Smith IS parcolp = NULL; 150572e6a0cfSJed Brown PetscBool done; 150642e855d1Svictor 150742e855d1Svictor PetscFunctionBegin; 15089566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15119566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 151272e6a0cfSJed Brown 151372e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15169566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 151772e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15199566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 152072e6a0cfSJed Brown 152172e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15229566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15249566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 152572e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15269566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15279566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15289566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152972e6a0cfSJed Brown 15309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15329566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 153372e6a0cfSJed Brown 153472e6a0cfSJed Brown /* Find out where my gcols should go */ 15359566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15379566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15389566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15399566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15429566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 154372e6a0cfSJed Brown 15449566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15459566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15469566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 154772e6a0cfSJed Brown for (i = 0; i < m; i++) { 1548131c27b5Sprj- PetscInt row = rdest[i]; 1549131c27b5Sprj- PetscMPIInt rowner; 15509566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 155172e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1552131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1553131c27b5Sprj- PetscMPIInt cowner; 15549566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 155572e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155672e6a0cfSJed Brown else onnz[i]++; 155772e6a0cfSJed Brown } 155872e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1559131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1560131c27b5Sprj- PetscMPIInt cowner; 15619566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 156272e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 156372e6a0cfSJed Brown else onnz[i]++; 156472e6a0cfSJed Brown } 156572e6a0cfSJed Brown } 15669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15709566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 157172e6a0cfSJed Brown 15729566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 157572e6a0cfSJed Brown for (i = 0; i < m; i++) { 157672e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1577970468b0SJed Brown PetscInt j0, rowlen; 157872e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1579970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1580970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15819566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1582970468b0SJed Brown } 158372e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1584970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1585970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15869566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1587970468b0SJed Brown } 158872e6a0cfSJed Brown } 15899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15919566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15929566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15959566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15969566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15979566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15989566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159972e6a0cfSJed Brown *B = Aperm; 16003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 160142e855d1Svictor } 160242e855d1Svictor 1603ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1604d71ae5a4SJacob Faibussowitsch { 1605c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1606c5e4d11fSDmitry Karpeev 1607c5e4d11fSDmitry Karpeev PetscFunctionBegin; 16089566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1609c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1611c5e4d11fSDmitry Karpeev } 1612c5e4d11fSDmitry Karpeev 1613ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1614d71ae5a4SJacob Faibussowitsch { 1615a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1616a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16173966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1618a66be287SLois Curfman McInnes 16193a40ed3dSBarry Smith PetscFunctionBegin; 16204e220ebcSLois Curfman McInnes info->block_size = 1.0; 16219566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16222205254eSKarl Rupp 16239371c9d4SSatish Balay isend[0] = info->nz_used; 16249371c9d4SSatish Balay isend[1] = info->nz_allocated; 16259371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16269371c9d4SSatish Balay isend[3] = info->memory; 16279371c9d4SSatish Balay isend[4] = info->mallocs; 16282205254eSKarl Rupp 16299566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16302205254eSKarl Rupp 16319371c9d4SSatish Balay isend[0] += info->nz_used; 16329371c9d4SSatish Balay isend[1] += info->nz_allocated; 16339371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16349371c9d4SSatish Balay isend[3] += info->memory; 16359371c9d4SSatish Balay isend[4] += info->mallocs; 1636a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16374e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16384e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16394e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16404e220ebcSLois Curfman McInnes info->memory = isend[3]; 16414e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1642a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1643462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16442205254eSKarl Rupp 16454e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16464e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16474e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16484e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16494e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1650a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1651462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16522205254eSKarl Rupp 16534e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16544e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16554e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16564e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16574e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1658a66be287SLois Curfman McInnes } 16594e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16604e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16614e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1663a66be287SLois Curfman McInnes } 1664a66be287SLois Curfman McInnes 1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1666d71ae5a4SJacob Faibussowitsch { 1667c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1668c74985f6SBarry Smith 16693a40ed3dSBarry Smith PetscFunctionBegin; 167012c028f9SKris Buschelman switch (op) { 1671512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 167212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 167328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1674a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 167512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16760ad02fcaSStefano Zampini case MAT_USE_INODES: 167712c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16781a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1679fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168212c028f9SKris Buschelman break; 168312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 168443674050SBarry Smith MatCheckPreallocated(A, 1); 16854e0d8c25SBarry Smith a->roworiented = flg; 16862205254eSKarl Rupp 16879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16889566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168912c028f9SKris Buschelman break; 16908c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1691d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1692d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1693d71ae5a4SJacob Faibussowitsch break; 1694d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1695d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1696d71ae5a4SJacob Faibussowitsch break; 1697c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1698ffa07934SHong Zhang case MAT_SPD: 169977e54ba9SKris Buschelman case MAT_SYMMETRIC: 170077e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1701bf108f30SBarry Smith case MAT_HERMITIAN: 1702bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1703b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1704b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1705b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 170677e54ba9SKris Buschelman break; 1707d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1708d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1709d71ae5a4SJacob Faibussowitsch break; 1710957cac9fSHong Zhang case MAT_STRUCTURE_ONLY: 1711957cac9fSHong Zhang /* The option is handled directly by MatSetOption() */ 1712957cac9fSHong Zhang break; 1713d71ae5a4SJacob Faibussowitsch default: 1714d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 17153a40ed3dSBarry Smith } 17163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1717c74985f6SBarry Smith } 1718c74985f6SBarry Smith 1719d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1720d71ae5a4SJacob Faibussowitsch { 1721154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 172287828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1723d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1724d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1725b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 172639e00950SLois Curfman McInnes 17273a40ed3dSBarry Smith PetscFunctionBegin; 172828b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17297a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17307a0afa10SBarry Smith 173170f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17327a0afa10SBarry Smith /* 17337a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17347a0afa10SBarry Smith */ 17357a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1736b1d57f15SBarry Smith PetscInt max = 1, tmp; 1737d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17387a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17392205254eSKarl Rupp if (max < tmp) max = tmp; 17407a0afa10SBarry Smith } 17419566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17427a0afa10SBarry Smith } 17437a0afa10SBarry Smith 1744aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1745abc0e9e4SLois Curfman McInnes lrow = row - rstart; 174639e00950SLois Curfman McInnes 17479371c9d4SSatish Balay pvA = &vworkA; 17489371c9d4SSatish Balay pcA = &cworkA; 17499371c9d4SSatish Balay pvB = &vworkB; 17509371c9d4SSatish Balay pcB = &cworkB; 17519371c9d4SSatish Balay if (!v) { 17529371c9d4SSatish Balay pvA = NULL; 17539371c9d4SSatish Balay pvB = NULL; 17549371c9d4SSatish Balay } 17559371c9d4SSatish Balay if (!idx) { 17569371c9d4SSatish Balay pcA = NULL; 17579371c9d4SSatish Balay if (!v) pcB = NULL; 17589371c9d4SSatish Balay } 17599566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17609566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1761154123eaSLois Curfman McInnes nztot = nzA + nzB; 1762154123eaSLois Curfman McInnes 176370f0671dSBarry Smith cmap = mat->garray; 1764154123eaSLois Curfman McInnes if (v || idx) { 1765154123eaSLois Curfman McInnes if (nztot) { 1766154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1767b1d57f15SBarry Smith PetscInt imark = -1; 1768154123eaSLois Curfman McInnes if (v) { 176970f0671dSBarry Smith *v = v_p = mat->rowvalues; 177039e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 177170f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1772154123eaSLois Curfman McInnes else break; 1773154123eaSLois Curfman McInnes } 1774154123eaSLois Curfman McInnes imark = i; 177570f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 177670f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1777154123eaSLois Curfman McInnes } 1778154123eaSLois Curfman McInnes if (idx) { 177970f0671dSBarry Smith *idx = idx_p = mat->rowindices; 178070f0671dSBarry Smith if (imark > -1) { 1781ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 178270f0671dSBarry Smith } else { 1783154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 178470f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1785154123eaSLois Curfman McInnes else break; 1786154123eaSLois Curfman McInnes } 1787154123eaSLois Curfman McInnes imark = i; 178870f0671dSBarry Smith } 178970f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 179070f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 179139e00950SLois Curfman McInnes } 17923f97c4b0SBarry Smith } else { 1793f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1794f4259b30SLisandro Dalcin if (v) *v = NULL; 17951ca473b0SSatish Balay } 1796154123eaSLois Curfman McInnes } 179739e00950SLois Curfman McInnes *nz = nztot; 17989566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17999566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 18003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180139e00950SLois Curfman McInnes } 180239e00950SLois Curfman McInnes 1803d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1804d71ae5a4SJacob Faibussowitsch { 18057a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 18063a40ed3dSBarry Smith 18073a40ed3dSBarry Smith PetscFunctionBegin; 180828b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18097a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 181139e00950SLois Curfman McInnes } 181239e00950SLois Curfman McInnes 1813ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1814d71ae5a4SJacob Faibussowitsch { 1815855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1816ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1817d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1818329f5518SBarry Smith PetscReal sum = 0.0; 1819fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 182004ca555eSLois Curfman McInnes 18213a40ed3dSBarry Smith PetscFunctionBegin; 182217699dbbSLois Curfman McInnes if (aij->size == 1) { 18239566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 182437fa93a5SLois Curfman McInnes } else { 18259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 182704ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1828fff043a9SJunchao Zhang v = amata; 182904ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18309371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18319371c9d4SSatish Balay v++; 183204ca555eSLois Curfman McInnes } 1833fff043a9SJunchao Zhang v = bmata; 183404ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18359371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18369371c9d4SSatish Balay v++; 183704ca555eSLois Curfman McInnes } 1838462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18398f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18409566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18413a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1842*e91c04dfSPierre Jolivet PetscReal *tmp; 1843b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18449566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 184504ca555eSLois Curfman McInnes *norm = 0.0; 18469371c9d4SSatish Balay v = amata; 18479371c9d4SSatish Balay jj = amat->j; 184804ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18499371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18509371c9d4SSatish Balay v++; 185104ca555eSLois Curfman McInnes } 18529371c9d4SSatish Balay v = bmata; 18539371c9d4SSatish Balay jj = bmat->j; 185404ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18559371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18569371c9d4SSatish Balay v++; 185704ca555eSLois Curfman McInnes } 1858*e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1859d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 1860*e91c04dfSPierre Jolivet if (tmp[j] > *norm) *norm = tmp[j]; 186104ca555eSLois Curfman McInnes } 18629566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18639566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18643a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1865329f5518SBarry Smith PetscReal ntemp = 0.0; 1866d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18678e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186804ca555eSLois Curfman McInnes sum = 0.0; 186904ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18709371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18719371c9d4SSatish Balay v++; 187204ca555eSLois Curfman McInnes } 18738e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 187404ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18759371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18769371c9d4SSatish Balay v++; 187704ca555eSLois Curfman McInnes } 1878515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187904ca555eSLois Curfman McInnes } 1880462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18819566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1882ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 188537fa93a5SLois Curfman McInnes } 18863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1887855ac2c5SLois Curfman McInnes } 1888855ac2c5SLois Curfman McInnes 1889ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1890d71ae5a4SJacob Faibussowitsch { 1891a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1892a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1893071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1894071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1895a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1896ce496241SStefano Zampini const MatScalar *pbv, *bv; 1897b7c46309SBarry Smith 18983a40ed3dSBarry Smith PetscFunctionBegin; 18997fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 19009371c9d4SSatish Balay ma = A->rmap->n; 19019371c9d4SSatish Balay na = A->cmap->n; 19029371c9d4SSatish Balay mb = a->B->rmap->n; 19039371c9d4SSatish Balay nb = a->B->cmap->n; 19049371c9d4SSatish Balay ai = Aloc->i; 19059371c9d4SSatish Balay aj = Aloc->j; 19069371c9d4SSatish Balay bi = Bloc->i; 19079371c9d4SSatish Balay bj = Bloc->j; 1908fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190980bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 191080bcc5a1SJed Brown PetscSFNode *oloc; 1911713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 191280bcc5a1SJed Brown 19139566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 191480bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19159566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1916cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191780bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191980bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 192080bcc5a1SJed Brown /* map those to global */ 19219566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19229566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19239566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19249566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 192557168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 192657168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19279566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1928d4bb536fSBarry Smith 19299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 19319566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 19329566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19339566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19349566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1935fc4dec0aSBarry Smith } else { 1936fc4dec0aSBarry Smith B = *matout; 19379566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1938fc4dec0aSBarry Smith } 1939b7c46309SBarry Smith 1940f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1941a8661f62Sandi selinger A_diag = a->A; 1942a8661f62Sandi selinger B_diag = &b->A; 1943a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1944a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1945a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1946a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1947f79cb1a0Sandi selinger 1948f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1949ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1950f79cb1a0Sandi selinger 19514cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1952a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19537fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19549566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1955f79cb1a0Sandi selinger 1956b7c46309SBarry Smith /* copy over the B part */ 19579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1959ce496241SStefano Zampini pbv = bv; 1960d0f46423SBarry Smith row = A->rmap->rstart; 19612205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 196261a2fbbaSHong Zhang cols_tmp = cols; 1963da668accSHong Zhang for (i = 0; i < mb; i++) { 1964da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19659566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19662205254eSKarl Rupp row++; 1967720a2405SPierre Jolivet if (pbv) pbv += ncol; 1968720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1969b7c46309SBarry Smith } 19709566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19719566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1972fc73b1b3SBarry Smith 19739566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19749566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1975cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19760de55854SLois Curfman McInnes *matout = B; 19770de55854SLois Curfman McInnes } else { 19789566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19790de55854SLois Curfman McInnes } 19803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1981b7c46309SBarry Smith } 1982b7c46309SBarry Smith 1983ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1984d71ae5a4SJacob Faibussowitsch { 19854b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19864b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1987b1d57f15SBarry Smith PetscInt s1, s2, s3; 1988a008b906SSatish Balay 19893a40ed3dSBarry Smith PetscFunctionBegin; 19909566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19914b967eb1SSatish Balay if (rr) { 19929566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 199308401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19944b967eb1SSatish Balay /* Overlap communication with computation. */ 19959566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1996a008b906SSatish Balay } 19974b967eb1SSatish Balay if (ll) { 19989566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199908401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 2000dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 20014b967eb1SSatish Balay } 20024b967eb1SSatish Balay /* scale the diagonal block */ 2003dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 20044b967eb1SSatish Balay 20054b967eb1SSatish Balay if (rr) { 20064b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20079566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2008dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20094b967eb1SSatish Balay } 20103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2011a008b906SSatish Balay } 2012a008b906SSatish Balay 2013ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2014d71ae5a4SJacob Faibussowitsch { 2015bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20163a40ed3dSBarry Smith 20173a40ed3dSBarry Smith PetscFunctionBegin; 20189566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2020bb5a7306SBarry Smith } 2021bb5a7306SBarry Smith 2022ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2023d71ae5a4SJacob Faibussowitsch { 2024d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2025d4bb536fSBarry Smith Mat a, b, c, d; 2026ace3abfcSBarry Smith PetscBool flg; 2027d4bb536fSBarry Smith 20283a40ed3dSBarry Smith PetscFunctionBegin; 20299371c9d4SSatish Balay a = matA->A; 20309371c9d4SSatish Balay b = matA->B; 20319371c9d4SSatish Balay c = matB->A; 20329371c9d4SSatish Balay d = matB->B; 2033d4bb536fSBarry Smith 20349566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 203548a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 2036462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2038d4bb536fSBarry Smith } 2039d4bb536fSBarry Smith 2040ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2041d71ae5a4SJacob Faibussowitsch { 2042cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2043cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2044cb5b572fSBarry Smith 2045cb5b572fSBarry Smith PetscFunctionBegin; 204633f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204733f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2048cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2049cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2050cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2051cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2052cb5b572fSBarry Smith then copying the submatrices */ 20539566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2054cb5b572fSBarry Smith } else { 20559566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20569566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2057cb5b572fSBarry Smith } 20589566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2060cb5b572fSBarry Smith } 2061cb5b572fSBarry Smith 2062001ddc4fSHong Zhang /* 2063001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2064001ddc4fSHong Zhang have different nonzero structure. 2065001ddc4fSHong Zhang */ 2066d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2067d71ae5a4SJacob Faibussowitsch { 2068001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206995b7e79eSJed Brown 207095b7e79eSJed Brown PetscFunctionBegin; 207195b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 207295b7e79eSJed Brown for (i = 0; i < m; i++) { 20738e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2074001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2075001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 207695b7e79eSJed Brown nnz[i] = 0; 207795b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2078001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2079001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 208095b7e79eSJed Brown nnz[i]++; 208195b7e79eSJed Brown } 208295b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 208395b7e79eSJed Brown } 20843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208595b7e79eSJed Brown } 208695b7e79eSJed Brown 2087001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2088d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2089d71ae5a4SJacob Faibussowitsch { 2090001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2091001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2092001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2093001ddc4fSHong Zhang 2094001ddc4fSHong Zhang PetscFunctionBegin; 20959566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2097001ddc4fSHong Zhang } 2098001ddc4fSHong Zhang 2099ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2100d71ae5a4SJacob Faibussowitsch { 2101ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2102ac90fabeSBarry Smith 2103ac90fabeSBarry Smith PetscFunctionBegin; 2104ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 21059566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 21069566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2107ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21089566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2109ac90fabeSBarry Smith } else { 21109f5f6813SShri Abhyankar Mat B; 21119f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2112d9d719b4SStefano Zampini 21139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21159566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21169566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21179566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21189566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21199566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21209566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21219566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21229566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21239566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21249566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21259566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2126ac90fabeSBarry Smith } 21273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2128ac90fabeSBarry Smith } 2129ac90fabeSBarry Smith 21302726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2131354c94deSBarry Smith 2132ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2133d71ae5a4SJacob Faibussowitsch { 21345f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21355f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2136354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2137354c94deSBarry Smith 21389566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21399566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21405f80ce2aSJacob Faibussowitsch } 21413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2142354c94deSBarry Smith } 2143354c94deSBarry Smith 2144ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2145d71ae5a4SJacob Faibussowitsch { 214699cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214799cafbc1SBarry Smith 214899cafbc1SBarry Smith PetscFunctionBegin; 21499566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21509566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215299cafbc1SBarry Smith } 215399cafbc1SBarry Smith 2154ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2155d71ae5a4SJacob Faibussowitsch { 215699cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215799cafbc1SBarry Smith 215899cafbc1SBarry Smith PetscFunctionBegin; 21599566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21609566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 216299cafbc1SBarry Smith } 216399cafbc1SBarry Smith 2164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2165d71ae5a4SJacob Faibussowitsch { 2166c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2167475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 2168475b8b61SHong Zhang PetscScalar *va, *vv; 2169475b8b61SHong Zhang Vec vB, vA; 2170475b8b61SHong Zhang const PetscScalar *vb; 2171c91732d9SHong Zhang 2172c91732d9SHong Zhang PetscFunctionBegin; 2173c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21749566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2175475b8b61SHong Zhang 21769566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 2177c91732d9SHong Zhang if (idx) { 2178475b8b61SHong Zhang for (i = 0; i < m; i++) { 2179d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2180c91732d9SHong Zhang } 2181c91732d9SHong Zhang } 2182c91732d9SHong Zhang 2183c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21859566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2186c91732d9SHong Zhang 21879566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21889566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2189475b8b61SHong Zhang for (i = 0; i < m; i++) { 2190c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2191475b8b61SHong Zhang vv[i] = vb[i]; 2192c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2193475b8b61SHong Zhang } else { 2194475b8b61SHong Zhang vv[i] = va[i]; 21959371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2196c91732d9SHong Zhang } 2197c91732d9SHong Zhang } 21989566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 21999566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 22009566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 22019566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 22029566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 22039566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 22043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2205c91732d9SHong Zhang } 2206c91732d9SHong Zhang 2207eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2208eede4a3fSMark Adams { 2209eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2210eede4a3fSMark Adams Vec vB, vA; 2211eede4a3fSMark Adams 2212eede4a3fSMark Adams PetscFunctionBegin; 2213c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2214eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2215c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2216eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2217eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2218eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2219eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2220eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2221eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2222eede4a3fSMark Adams } 2223eede4a3fSMark Adams 2224ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2225d71ae5a4SJacob Faibussowitsch { 2226f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2227f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2228f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2229f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2230f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2231f07e67edSHong Zhang Vec diagV, offdiagV; 2232ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2233ce496241SStefano Zampini const PetscScalar *ba, *bav; 2234f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2235f07e67edSHong Zhang Mat B = mat->B; 2236f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2237c87e5d42SMatthew Knepley 2238c87e5d42SMatthew Knepley PetscFunctionBegin; 2239f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2240f07e67edSHong Zhang if (A->cmap->N == n) { 22419566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22429566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22439566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2247f07e67edSHong Zhang } else if (n == 0) { 2248f07e67edSHong Zhang if (m) { 22499566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22509371c9d4SSatish Balay for (r = 0; r < m; r++) { 22519371c9d4SSatish Balay a[r] = 0.0; 22529371c9d4SSatish Balay if (idx) idx[r] = -1; 22539371c9d4SSatish Balay } 22549566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2255f07e67edSHong Zhang } 22563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2257f07e67edSHong Zhang } 2258f07e67edSHong Zhang 22599566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22609566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22619566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22629566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2263f07e67edSHong Zhang 2264f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2266ce496241SStefano Zampini ba = bav; 2267f07e67edSHong Zhang bi = b->i; 2268f07e67edSHong Zhang bj = b->j; 22699566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2270f07e67edSHong Zhang for (r = 0; r < m; r++) { 2271f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2272f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22739371c9d4SSatish Balay offdiagA[r] = *ba; 22749371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2275f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2276f07e67edSHong Zhang offdiagA[r] = 0.0; 2277f07e67edSHong Zhang 2278f07e67edSHong Zhang /* Find first hole in the cmap */ 2279f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2280f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2281f07e67edSHong Zhang if (col > j && j < cstart) { 2282f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2283f07e67edSHong Zhang break; 2284f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2285f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2286f07e67edSHong Zhang break; 2287f07e67edSHong Zhang } 2288f07e67edSHong Zhang } 22894e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2290f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2291f07e67edSHong Zhang if (ncols == 0) { 2292f07e67edSHong Zhang if (cstart) { 2293f07e67edSHong Zhang offdiagIdx[r] = 0; 2294f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2295f07e67edSHong Zhang } else { /* ncols > 0 */ 2296f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2297f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2298f07e67edSHong Zhang } 2299f07e67edSHong Zhang } 2300f07e67edSHong Zhang } 2301f07e67edSHong Zhang 2302f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 23039371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 23049371c9d4SSatish Balay offdiagA[r] = *ba; 23059371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 23069371c9d4SSatish Balay } 23079371c9d4SSatish Balay ba++; 23089371c9d4SSatish Balay bj++; 2309f07e67edSHong Zhang } 2310f07e67edSHong Zhang } 2311f07e67edSHong Zhang 23129566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23139566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2314f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2315f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2316f07e67edSHong Zhang a[r] = diagA[r]; 2317f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2318f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2319f07e67edSHong Zhang a[r] = diagA[r]; 2320c87e5d42SMatthew Knepley if (idx) { 2321f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2322f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2323f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2324f07e67edSHong Zhang } 2325f07e67edSHong Zhang } else { 2326f07e67edSHong Zhang a[r] = offdiagA[r]; 2327f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2328c87e5d42SMatthew Knepley } 2329c87e5d42SMatthew Knepley } 23309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23319566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23329566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23339566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23349566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23359566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23369566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2338c87e5d42SMatthew Knepley } 2339c87e5d42SMatthew Knepley 2340ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2341d71ae5a4SJacob Faibussowitsch { 234203bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2343fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2344fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 234503bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 234603bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 234703bc72f1SMatthew Knepley Vec diagV, offdiagV; 2348ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2349ce496241SStefano Zampini const PetscScalar *ba, *bav; 2350fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2351fa213d2fSHong Zhang Mat B = mat->B; 2352fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 235303bc72f1SMatthew Knepley 235403bc72f1SMatthew Knepley PetscFunctionBegin; 2355fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2356fa213d2fSHong Zhang if (A->cmap->N == n) { 23579566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23589566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23599566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23619566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2363fa213d2fSHong Zhang } else if (n == 0) { 2364fa213d2fSHong Zhang if (m) { 23659566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23669371c9d4SSatish Balay for (r = 0; r < m; r++) { 23679371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23689371c9d4SSatish Balay if (idx) idx[r] = -1; 23699371c9d4SSatish Balay } 23709566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2371fa213d2fSHong Zhang } 23723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2373fa213d2fSHong Zhang } 2374fa213d2fSHong Zhang 23759566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23769566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23779566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23789566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2379fa213d2fSHong Zhang 2380fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23819566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2382ce496241SStefano Zampini ba = bav; 2383fa213d2fSHong Zhang bi = b->i; 2384fa213d2fSHong Zhang bj = b->j; 23859566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2386fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2387fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2388fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23899371c9d4SSatish Balay offdiagA[r] = *ba; 23909371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2391fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2392fa213d2fSHong Zhang offdiagA[r] = 0.0; 2393fa213d2fSHong Zhang 2394fa213d2fSHong Zhang /* Find first hole in the cmap */ 2395fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2396fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2397fa213d2fSHong Zhang if (col > j && j < cstart) { 2398fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2399fa213d2fSHong Zhang break; 2400fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2401fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2402fa213d2fSHong Zhang break; 2403fa213d2fSHong Zhang } 2404fa213d2fSHong Zhang } 24054e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2406fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2407fa213d2fSHong Zhang if (ncols == 0) { 2408fa213d2fSHong Zhang if (cstart) { 2409fa213d2fSHong Zhang offdiagIdx[r] = 0; 2410fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2411fa213d2fSHong Zhang } else { /* ncols > 0 */ 2412fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2413fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2414fa213d2fSHong Zhang } 2415fa213d2fSHong Zhang } 2416fa213d2fSHong Zhang } 2417fa213d2fSHong Zhang 2418fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24199371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24209371c9d4SSatish Balay offdiagA[r] = *ba; 24219371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24229371c9d4SSatish Balay } 24239371c9d4SSatish Balay ba++; 24249371c9d4SSatish Balay bj++; 2425fa213d2fSHong Zhang } 2426fa213d2fSHong Zhang } 2427fa213d2fSHong Zhang 24289566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24299566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2430fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2431fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 243203bc72f1SMatthew Knepley a[r] = diagA[r]; 2433fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2434fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2435fa213d2fSHong Zhang a[r] = diagA[r]; 2436fa213d2fSHong Zhang if (idx) { 2437fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 243803bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2439fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2440fa213d2fSHong Zhang } 244103bc72f1SMatthew Knepley } else { 244203bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2443fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 244403bc72f1SMatthew Knepley } 244503bc72f1SMatthew Knepley } 24469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24499566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24529566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 245403bc72f1SMatthew Knepley } 245503bc72f1SMatthew Knepley 2456ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2457d71ae5a4SJacob Faibussowitsch { 2458c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24591a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24601a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2461c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2462c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2463c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2464ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2465ce496241SStefano Zampini const PetscScalar *ba, *bav; 24661a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24671a254869SHong Zhang Mat B = mat->B; 24681a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2469c87e5d42SMatthew Knepley 2470c87e5d42SMatthew Knepley PetscFunctionBegin; 24711a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24721a254869SHong Zhang if (A->cmap->N == n) { 24739566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24749566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24759566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24769566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24779566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24791a254869SHong Zhang } else if (n == 0) { 24801a254869SHong Zhang if (m) { 24819566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24829371c9d4SSatish Balay for (r = 0; r < m; r++) { 24839371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24849371c9d4SSatish Balay if (idx) idx[r] = -1; 24859371c9d4SSatish Balay } 24869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24871a254869SHong Zhang } 24883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24891a254869SHong Zhang } 24901a254869SHong Zhang 24919566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24929566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24939566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24949566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24951a254869SHong Zhang 24961a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2498ce496241SStefano Zampini ba = bav; 24991a254869SHong Zhang bi = b->i; 25001a254869SHong Zhang bj = b->j; 25019566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 25021a254869SHong Zhang for (r = 0; r < m; r++) { 25031a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 25041a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 25059371c9d4SSatish Balay offdiagA[r] = *ba; 25069371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 25071a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 25081a254869SHong Zhang offdiagA[r] = 0.0; 25091a254869SHong Zhang 25101a254869SHong Zhang /* Find first hole in the cmap */ 25111a254869SHong Zhang for (j = 0; j < ncols; j++) { 25121a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25131a254869SHong Zhang if (col > j && j < cstart) { 25141a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25151a254869SHong Zhang break; 25161a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25171a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25181a254869SHong Zhang break; 25191a254869SHong Zhang } 25201a254869SHong Zhang } 25214e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25221a254869SHong Zhang /* a hole is outside compressed Bcols */ 25231a254869SHong Zhang if (ncols == 0) { 25241a254869SHong Zhang if (cstart) { 25251a254869SHong Zhang offdiagIdx[r] = 0; 25261a254869SHong Zhang } else offdiagIdx[r] = cend; 25271a254869SHong Zhang } else { /* ncols > 0 */ 25281a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25291a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25301a254869SHong Zhang } 25311a254869SHong Zhang } 25321a254869SHong Zhang } 25331a254869SHong Zhang 25341a254869SHong Zhang for (j = 0; j < ncols; j++) { 25359371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25369371c9d4SSatish Balay offdiagA[r] = *ba; 25379371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25389371c9d4SSatish Balay } 25399371c9d4SSatish Balay ba++; 25409371c9d4SSatish Balay bj++; 25411a254869SHong Zhang } 25421a254869SHong Zhang } 25431a254869SHong Zhang 25449566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25459566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25461a254869SHong Zhang for (r = 0; r < m; ++r) { 25471a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2548c87e5d42SMatthew Knepley a[r] = diagA[r]; 25491a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25501a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25511a254869SHong Zhang a[r] = diagA[r]; 25521a254869SHong Zhang if (idx) { 25531a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2554c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25551a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25561a254869SHong Zhang } 2557c87e5d42SMatthew Knepley } else { 2558c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25591a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2560c87e5d42SMatthew Knepley } 2561c87e5d42SMatthew Knepley } 25629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25639566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25669566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25679566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25689566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2570c87e5d42SMatthew Knepley } 2571c87e5d42SMatthew Knepley 2572d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2573d71ae5a4SJacob Faibussowitsch { 2574f6d58c54SBarry Smith Mat *dummy; 25755494a064SHong Zhang 25765494a064SHong Zhang PetscFunctionBegin; 25779566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2578f6d58c54SBarry Smith *newmat = *dummy; 25799566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25815494a064SHong Zhang } 25825494a064SHong Zhang 2583ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2584d71ae5a4SJacob Faibussowitsch { 2585bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2586bbead8a2SBarry Smith 2587bbead8a2SBarry Smith PetscFunctionBegin; 25889566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25897b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2591bbead8a2SBarry Smith } 2592bbead8a2SBarry Smith 2593d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2594d71ae5a4SJacob Faibussowitsch { 259573a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 259673a71a0fSBarry Smith 259773a71a0fSBarry Smith PetscFunctionBegin; 259808401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25999566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2600679944adSJunchao Zhang if (x->assembled) { 26019566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2602679944adSJunchao Zhang } else { 26039566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2604679944adSJunchao Zhang } 26059566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 26069566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 26073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260873a71a0fSBarry Smith } 2609bbead8a2SBarry Smith 2610ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2611d71ae5a4SJacob Faibussowitsch { 2612b1b1104fSBarry Smith PetscFunctionBegin; 2613b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2614b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2616b1b1104fSBarry Smith } 2617b1b1104fSBarry Smith 2618b1b1104fSBarry Smith /*@ 2619f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2620f2afee66SBarry Smith 26212ef1f0ffSBarry Smith Not Collective 2622f2afee66SBarry Smith 2623f2afee66SBarry Smith Input Parameter: 2624f2afee66SBarry Smith . A - the matrix 2625f2afee66SBarry Smith 2626f2afee66SBarry Smith Output Parameter: 2627f2afee66SBarry Smith . nz - the number of nonzeros 2628f2afee66SBarry Smith 2629f2afee66SBarry Smith Level: advanced 2630f2afee66SBarry Smith 2631fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2632f2afee66SBarry Smith @*/ 2633d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2634d71ae5a4SJacob Faibussowitsch { 2635f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2636f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2637dfebb78cSStefano Zampini PetscBool isaij; 2638f2afee66SBarry Smith 2639f2afee66SBarry Smith PetscFunctionBegin; 2640dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2641dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2642f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2644f2afee66SBarry Smith } 2645f2afee66SBarry Smith 2646f2afee66SBarry Smith /*@ 2647b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2648b1b1104fSBarry Smith 2649c3339decSBarry Smith Collective 2650b1b1104fSBarry Smith 2651b1b1104fSBarry Smith Input Parameters: 2652b1b1104fSBarry Smith + A - the matrix 265311a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2654b1b1104fSBarry Smith 265596a0c994SBarry Smith Level: advanced 265696a0c994SBarry Smith 2657fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2658b1b1104fSBarry Smith @*/ 2659d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2660d71ae5a4SJacob Faibussowitsch { 2661b1b1104fSBarry Smith PetscFunctionBegin; 2662cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2664b1b1104fSBarry Smith } 2665b1b1104fSBarry Smith 2666d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject) 2667d71ae5a4SJacob Faibussowitsch { 2668b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2669b1b1104fSBarry Smith 2670b1b1104fSBarry Smith PetscFunctionBegin; 2671d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2672b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26739566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26741baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2675d0609cedSBarry Smith PetscOptionsHeadEnd(); 26763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2677b1b1104fSBarry Smith } 2678b1b1104fSBarry Smith 2679ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2680d71ae5a4SJacob Faibussowitsch { 26817d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2682c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26837d68702bSBarry Smith 26847d68702bSBarry Smith PetscFunctionBegin; 2685c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26869566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26875519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2688b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2690b83222d8SBarry Smith aij->nonew = nonew; 26917d68702bSBarry Smith } 26929566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26947d68702bSBarry Smith } 26957d68702bSBarry Smith 2696ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2697d71ae5a4SJacob Faibussowitsch { 26983b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26993b49f96aSBarry Smith 27003b49f96aSBarry Smith PetscFunctionBegin; 270108401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 27029566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 27033b49f96aSBarry Smith if (d) { 27043b49f96aSBarry Smith PetscInt rstart; 27059566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 27063b49f96aSBarry Smith *d += rstart; 27073b49f96aSBarry Smith } 27083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27093b49f96aSBarry Smith } 27103b49f96aSBarry Smith 2711ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2712d71ae5a4SJacob Faibussowitsch { 2713a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2714a8ee9fb5SBarry Smith 2715a8ee9fb5SBarry Smith PetscFunctionBegin; 27169566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2718a8ee9fb5SBarry Smith } 27193b49f96aSBarry Smith 272058c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2721dec0b466SHong Zhang { 2722dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2723dec0b466SHong Zhang 2724dec0b466SHong Zhang PetscFunctionBegin; 272558c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 272658c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2728dec0b466SHong Zhang } 2729dec0b466SHong Zhang 2730cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2731cda55fadSBarry Smith MatGetRow_MPIAIJ, 2732cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2733cda55fadSBarry Smith MatMult_MPIAIJ, 273497304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27357c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27367c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2737f4259b30SLisandro Dalcin NULL, 2738f4259b30SLisandro Dalcin NULL, 2739f4259b30SLisandro Dalcin NULL, 2740f4259b30SLisandro Dalcin /*10*/ NULL, 2741f4259b30SLisandro Dalcin NULL, 2742f4259b30SLisandro Dalcin NULL, 274341f059aeSBarry Smith MatSOR_MPIAIJ, 2744b7c46309SBarry Smith MatTranspose_MPIAIJ, 274597304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2746cda55fadSBarry Smith MatEqual_MPIAIJ, 2747cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2748cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2749cda55fadSBarry Smith MatNorm_MPIAIJ, 275097304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2751cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2752cda55fadSBarry Smith MatSetOption_MPIAIJ, 2753cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2754d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2755f4259b30SLisandro Dalcin NULL, 2756f4259b30SLisandro Dalcin NULL, 2757f4259b30SLisandro Dalcin NULL, 2758f4259b30SLisandro Dalcin NULL, 275926cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2760f4259b30SLisandro Dalcin NULL, 2761f4259b30SLisandro Dalcin NULL, 2762a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2763f4259b30SLisandro Dalcin NULL, 2764d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2765f4259b30SLisandro Dalcin NULL, 2766f4259b30SLisandro Dalcin NULL, 2767f4259b30SLisandro Dalcin NULL, 2768f4259b30SLisandro Dalcin NULL, 2769d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27707dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2771cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2772cda55fadSBarry Smith MatGetValues_MPIAIJ, 2773cb5b572fSBarry Smith MatCopy_MPIAIJ, 2774d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2775cda55fadSBarry Smith MatScale_MPIAIJ, 27767d68702bSBarry Smith MatShift_MPIAIJ, 277799e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2778564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 277973a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27808a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27818a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2782f4259b30SLisandro Dalcin NULL, 2783f4259b30SLisandro Dalcin NULL, 278493dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2785f4259b30SLisandro Dalcin NULL, 2786cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 278772e6a0cfSJed Brown MatPermute_MPIAIJ, 2788f4259b30SLisandro Dalcin NULL, 27897dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2790e03a110bSBarry Smith MatDestroy_MPIAIJ, 2791e03a110bSBarry Smith MatView_MPIAIJ, 2792f4259b30SLisandro Dalcin NULL, 2793f4259b30SLisandro Dalcin NULL, 2794f4259b30SLisandro Dalcin /*64*/ NULL, 2795f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2796f4259b30SLisandro Dalcin NULL, 2797f4259b30SLisandro Dalcin NULL, 2798f4259b30SLisandro Dalcin NULL, 2799d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2800c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2801f4259b30SLisandro Dalcin NULL, 2802f4259b30SLisandro Dalcin NULL, 2803f4259b30SLisandro Dalcin NULL, 2804f4259b30SLisandro Dalcin NULL, 28053acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2806b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2807f4259b30SLisandro Dalcin NULL, 2808f4259b30SLisandro Dalcin NULL, 2809f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2810f4259b30SLisandro Dalcin /*80*/ NULL, 2811f4259b30SLisandro Dalcin NULL, 2812f4259b30SLisandro Dalcin NULL, 28135bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 28146cff0a6bSPierre Jolivet NULL, 2815f4259b30SLisandro Dalcin NULL, 2816f4259b30SLisandro Dalcin NULL, 2817f4259b30SLisandro Dalcin NULL, 2818f4259b30SLisandro Dalcin NULL, 2819f4259b30SLisandro Dalcin /*89*/ NULL, 2820f4259b30SLisandro Dalcin NULL, 282126be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2822f4259b30SLisandro Dalcin NULL, 2823f4259b30SLisandro Dalcin NULL, 2824cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2825f4259b30SLisandro Dalcin NULL, 2826f4259b30SLisandro Dalcin NULL, 2827f4259b30SLisandro Dalcin NULL, 2828b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28294222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2830f4259b30SLisandro Dalcin NULL, 2831f4259b30SLisandro Dalcin NULL, 28322fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2833f4259b30SLisandro Dalcin NULL, 2834d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 283599cafbc1SBarry Smith MatRealPart_MPIAIJ, 283669db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2837f4259b30SLisandro Dalcin NULL, 2838f4259b30SLisandro Dalcin NULL, 2839f4259b30SLisandro Dalcin /*109*/ NULL, 2840f4259b30SLisandro Dalcin NULL, 28415494a064SHong Zhang MatGetRowMin_MPIAIJ, 2842f4259b30SLisandro Dalcin NULL, 28433b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2844d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2845f4259b30SLisandro Dalcin NULL, 2846c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2847f4259b30SLisandro Dalcin NULL, 2848f4259b30SLisandro Dalcin NULL, 2849b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2850f4259b30SLisandro Dalcin NULL, 2851f4259b30SLisandro Dalcin NULL, 2852f4259b30SLisandro Dalcin NULL, 2853b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2854f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2855a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2856bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2857a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28587dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2859f4259b30SLisandro Dalcin /*129*/ NULL, 2860f4259b30SLisandro Dalcin NULL, 2861f4259b30SLisandro Dalcin NULL, 2862187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2863f4259b30SLisandro Dalcin NULL, 2864f4259b30SLisandro Dalcin /*134*/ NULL, 2865f4259b30SLisandro Dalcin NULL, 2866f4259b30SLisandro Dalcin NULL, 2867f4259b30SLisandro Dalcin NULL, 2868f4259b30SLisandro Dalcin NULL, 286946533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2870f4259b30SLisandro Dalcin NULL, 2871f4259b30SLisandro Dalcin NULL, 28729c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2873a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28744222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2875f4259b30SLisandro Dalcin /*145*/ NULL, 2876f4259b30SLisandro Dalcin NULL, 287772833a62Smarkadams4 NULL, 287872833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28792d776b49SBarry Smith NULL, 2880dec0b466SHong Zhang /*150*/ NULL, 2881eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 28824cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 288342ce410bSJunchao Zhang NULL, 288442ce410bSJunchao Zhang NULL, 2885fe1fc275SAlexander /*155*/ NULL, 2886fe1fc275SAlexander MatCopyHashToXAIJ_MPI_Hash}; 288736ce4990SBarry Smith 2888ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2889d71ae5a4SJacob Faibussowitsch { 28902e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28912e8a6d31SBarry Smith 28922e8a6d31SBarry Smith PetscFunctionBegin; 28939566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28949566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28962e8a6d31SBarry Smith } 28972e8a6d31SBarry Smith 2898ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2899d71ae5a4SJacob Faibussowitsch { 29002e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 29012e8a6d31SBarry Smith 29022e8a6d31SBarry Smith PetscFunctionBegin; 29039566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 29049566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 29053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29062e8a6d31SBarry Smith } 29078a729477SBarry Smith 2908d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2909d71ae5a4SJacob Faibussowitsch { 2910ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29115d2a9ed1SStefano Zampini PetscMPIInt size; 2912a23d5eceSKris Buschelman 2913a23d5eceSKris Buschelman PetscFunctionBegin; 2914ad79cf63SBarry Smith if (B->hash_active) { 2915aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2916ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2917ad79cf63SBarry Smith } 29189566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29199566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2920899cda47SBarry Smith 2921cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2922eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2923cb7b82ddSBarry Smith #else 29249566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2925cb7b82ddSBarry Smith #endif 29269566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29279566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29289566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2929cb7b82ddSBarry Smith 29309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2931c508b908SBarry Smith 2932c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29339566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29349566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29369566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29379566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2938c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2939cb7b82ddSBarry Smith 2940c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2941ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29429566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29439566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29449566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29459566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2946c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2947899cda47SBarry Smith 29489566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29499566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2950526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2951cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 295215001458SStefano Zampini B->assembled = PETSC_FALSE; 29533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2954a23d5eceSKris Buschelman } 2955a23d5eceSKris Buschelman 2956ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2957d71ae5a4SJacob Faibussowitsch { 2958ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2959846b4da1SFande Kong 2960846b4da1SFande Kong PetscFunctionBegin; 2961846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29629566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29639566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2964eb14dd14SAlex Lindsay if (B->assembled || B->was_assembled) PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE)); 2965eb14dd14SAlex Lindsay else { 2966846b4da1SFande Kong #if defined(PETSC_USE_CTABLE) 2967eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2968846b4da1SFande Kong #else 29699566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2970846b4da1SFande Kong #endif 29719566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29729566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 2973eb14dd14SAlex Lindsay } 29749566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2975846b4da1SFande Kong 29769566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->A)); 29779566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->B)); 2978846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2979846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2980846b4da1SFande Kong B->assembled = PETSC_FALSE; 29813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2982846b4da1SFande Kong } 2983846b4da1SFande Kong 2984d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2985d71ae5a4SJacob Faibussowitsch { 2986d6dfbf8fSBarry Smith Mat mat; 2987416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2988d6dfbf8fSBarry Smith 29893a40ed3dSBarry Smith PetscFunctionBegin; 2990f4259b30SLisandro Dalcin *newmat = NULL; 29919566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29929566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29939566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29949566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2995273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2996e1b6402fSHong Zhang 2997d5f3da31SBarry Smith mat->factortype = matin->factortype; 2998501880eeSStefano Zampini mat->assembled = matin->assembled; 2999e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 3000d6dfbf8fSBarry Smith 300117699dbbSLois Curfman McInnes a->size = oldmat->size; 300217699dbbSLois Curfman McInnes a->rank = oldmat->rank; 3003e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 3004e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 3005501880eeSStefano Zampini a->rowindices = NULL; 3006501880eeSStefano Zampini a->rowvalues = NULL; 3007bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 3008d6dfbf8fSBarry Smith 30099566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 30109566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3011420957c1SBarry Smith if (matin->hash_active) { 3012420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3013420957c1SBarry Smith } else { 3014420957c1SBarry Smith mat->preallocated = matin->preallocated; 30152ee70a88SLois Curfman McInnes if (oldmat->colmap) { 3016aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3017eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3018b1fc9764SSatish Balay #else 30199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30209566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3021b1fc9764SSatish Balay #endif 3022501880eeSStefano Zampini } else a->colmap = NULL; 30233f41c07dSBarry Smith if (oldmat->garray) { 3024b1d57f15SBarry Smith PetscInt len; 3025d0f46423SBarry Smith len = oldmat->B->cmap->n; 30269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30279566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3028501880eeSStefano Zampini } else a->garray = NULL; 3029d6dfbf8fSBarry Smith 30300de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30310de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30320de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3033aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3034cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3035cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3036cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3037cff58d65SJunchao Zhang } 30389566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30399566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3040420957c1SBarry Smith } 30419566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30428a729477SBarry Smith *newmat = mat; 30433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30448a729477SBarry Smith } 3045416022c9SBarry Smith 3046d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3047d71ae5a4SJacob Faibussowitsch { 304852f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 304952f91c60SVaclav Hapla 305052f91c60SVaclav Hapla PetscFunctionBegin; 305152f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 305252f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3053c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30549566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30559566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 305752f91c60SVaclav Hapla if (isbinary) { 30589566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 305952f91c60SVaclav Hapla } else if (ishdf5) { 306052f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30619566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 306252f91c60SVaclav Hapla #else 306352f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 306452f91c60SVaclav Hapla #endif 306552f91c60SVaclav Hapla } else { 306698921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 306752f91c60SVaclav Hapla } 30683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 306952f91c60SVaclav Hapla } 307052f91c60SVaclav Hapla 3071d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3072d71ae5a4SJacob Faibussowitsch { 30733ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30743ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30753ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30768fb81238SShri Abhyankar 30778fb81238SShri Abhyankar PetscFunctionBegin; 30789566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30798fb81238SShri Abhyankar 30803ea6fe3dSLisandro Dalcin /* read in matrix header */ 30819566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 308208401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30839371c9d4SSatish Balay M = header[1]; 30849371c9d4SSatish Balay N = header[2]; 30859371c9d4SSatish Balay nz = header[3]; 308608401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 308708401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 308808401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 308908ea439dSMark F. Adams 30903ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30919566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30923ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30933ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30943ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30978fb81238SShri Abhyankar 30983ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30999566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3100aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 31018fb81238SShri Abhyankar 31023ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 31039566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 31049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 31059566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 31069371c9d4SSatish Balay rowidxs[0] = 0; 31079371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 31081690c2aeSBarry Smith if (nz != PETSC_INT_MAX) { 3109462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 311008401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 311138b83642SBarry Smith } 311238b83642SBarry Smith 31133ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 31149566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 31159566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 31169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 31173ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 31189566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 31199566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31209566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31228fb81238SShri Abhyankar } 31238fb81238SShri Abhyankar 31243782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3125ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3126d71ae5a4SJacob Faibussowitsch { 31274aa3045dSJed Brown IS iscol_local; 3128c5e4d11fSDmitry Karpeev PetscBool isstride; 3129c5e4d11fSDmitry Karpeev PetscMPIInt lisstride = 0, gisstride; 31303782ecc7SHong Zhang 31313782ecc7SHong Zhang PetscFunctionBegin; 31323782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31339566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31343782ecc7SHong Zhang 3135c5e4d11fSDmitry Karpeev if (isstride) { 3136c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31379566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31389566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31399566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 3140c5e4d11fSDmitry Karpeev if (mstart == start && mlen - mstart == len) lisstride = 1; 3141c5e4d11fSDmitry Karpeev } 31423782ecc7SHong Zhang 3143462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3144c5e4d11fSDmitry Karpeev if (gisstride) { 3145c5e4d11fSDmitry Karpeev PetscInt N; 31469566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31479566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31489566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31499566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3150c5e4d11fSDmitry Karpeev } else { 3151c5bfad50SMark F. Adams PetscInt cbs; 31529566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31539566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31549566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3155b79d0421SJed Brown } 31563782ecc7SHong Zhang 31573782ecc7SHong Zhang *isseq = iscol_local; 31583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3159c5e4d11fSDmitry Karpeev } 31608d2139bdSHong Zhang 3161ddfdf956SHong Zhang /* 31629c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31639c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3164ddfdf956SHong Zhang 3165ddfdf956SHong Zhang Input Parameters: 316627430b45SBarry Smith + mat - matrix 316727430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31689c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 316927430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3170ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 317127430b45SBarry Smith 317227430b45SBarry Smith Output Parameters: 317327430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 317427430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 317527430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 317627430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3177ddfdf956SHong Zhang */ 3178835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[]) 3179d71ae5a4SJacob Faibussowitsch { 3180040216a4SHong Zhang Vec x, cmap; 3181040216a4SHong Zhang const PetscInt *is_idx; 3182040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31839c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3184040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3185040216a4SHong Zhang Mat B = a->B; 3186040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3187a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31888b3fa1f7SHong Zhang MPI_Comm comm; 31893a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31903782ecc7SHong Zhang 31913782ecc7SHong Zhang PetscFunctionBegin; 31929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31939566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31948b3fa1f7SHong Zhang 3195ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31969566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31979566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31989566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31999566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 32000a351717SHong Zhang 32019c988bcaSHong Zhang /* Get start indices */ 32029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3203ddfdf956SHong Zhang isstart -= ncols; 32049566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3205040216a4SHong Zhang 32069566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 32079566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 32089566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 32099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3210ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 32118b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3212ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 32139c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 32148b3fa1f7SHong Zhang } 32159566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 32169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 32179566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 32188b3fa1f7SHong Zhang 32199c988bcaSHong Zhang /* Get iscol_d */ 32209566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32219566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32229566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3223feb78a15SHong Zhang 32249c988bcaSHong Zhang /* Get isrow_d */ 32259566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3226feb78a15SHong Zhang rstart = mat->rmap->rstart; 32279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32299c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3231feb78a15SHong Zhang 32329566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32339566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32349566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3235feb78a15SHong Zhang 32369c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32389566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3239ddfdf956SHong Zhang 32409566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 324107250d77SHong Zhang 32429566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32439566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 324464efcef9SHong Zhang 32459c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3246ddfdf956SHong Zhang /* off-process column indices */ 32479c988bcaSHong Zhang count = 0; 32489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3250feb78a15SHong Zhang 32519566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32529566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32538b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3254f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32559c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32561c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32571c645242SHong Zhang count++; 32588b3fa1f7SHong Zhang } 32598b3fa1f7SHong Zhang } 32609566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 326207250d77SHong Zhang 32639566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3264b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3265b6d9b4e0SHong Zhang 32669566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32679c988bcaSHong Zhang *garray = cmap1; 32689c988bcaSHong Zhang 32699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32719566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3273040216a4SHong Zhang } 3274040216a4SHong Zhang 3275b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3276d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3277d71ae5a4SJacob Faibussowitsch { 3278b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32791fd43edeSHong Zhang Mat M = NULL; 32803b00a383SHong Zhang MPI_Comm comm; 3281b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32823b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3283b20e2604SHong Zhang PetscInt n; 32843b00a383SHong Zhang 32853b00a383SHong Zhang PetscFunctionBegin; 32869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32873b00a383SHong Zhang 32883b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3289b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32909566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 329128b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32923b00a383SHong Zhang 32939566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 329428b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32953b00a383SHong Zhang 32969566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 329728b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32983b00a383SHong Zhang 3299b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3300b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 33019566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 33029566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 330348a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 33049566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 33059566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 33063b00a383SHong Zhang 33073b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 3308835f2295SStefano Zampini PetscInt *garray; 3309b20e2604SHong Zhang PetscInt BsubN; 33103b00a383SHong Zhang 3311b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 33129566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 33133b00a383SHong Zhang 3314b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 33159566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 33169566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 33173b00a383SHong Zhang 33189c988bcaSHong Zhang /* Create submatrix M */ 33199566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M)); 33203b00a383SHong Zhang 3321b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3322b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33237cfce09cSHong Zhang 33249566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3325b20e2604SHong Zhang n = asub->B->cmap->N; 3326b20e2604SHong Zhang if (BsubN > n) { 3327c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33287cfce09cSHong Zhang const PetscInt *idx; 33299c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33309566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33317cfce09cSHong Zhang 33329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33337cfce09cSHong Zhang j = 0; 33349566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3335b20e2604SHong Zhang for (i = 0; i < n; i++) { 33367cfce09cSHong Zhang if (j >= BsubN) break; 33379c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33387cfce09cSHong Zhang 33399c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33407cfce09cSHong Zhang idx_new[i] = idx[j++]; 334198921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33427cfce09cSHong Zhang } 33439566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33447cfce09cSHong Zhang 33459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33469566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33477cfce09cSHong Zhang 3348b20e2604SHong Zhang } else if (BsubN < n) { 334998921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3350b20e2604SHong Zhang } 33517cfce09cSHong Zhang 33529566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3353b20e2604SHong Zhang *submat = M; 33543b00a383SHong Zhang 3355e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33569566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33583b00a383SHong Zhang 33599566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33613b00a383SHong Zhang 33629566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33643b00a383SHong Zhang } 33653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33663b00a383SHong Zhang } 33673b00a383SHong Zhang 3368d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3369d71ae5a4SJacob Faibussowitsch { 33701358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33713782ecc7SHong Zhang PetscInt csize; 337218e627e3SHong Zhang PetscInt n, i, j, start, end; 33734a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33743782ecc7SHong Zhang MPI_Comm comm; 33753782ecc7SHong Zhang 33763782ecc7SHong Zhang PetscFunctionBegin; 3377bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3378a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33798f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33809566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3381d5761cdaSHong Zhang if (isrow_d) { 3382d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3383d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3384d5761cdaSHong Zhang } else { 33859566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3386d5761cdaSHong Zhang if (iscol_local) { 3387d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3388d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3389d5761cdaSHong Zhang } 3390d5761cdaSHong Zhang } 33918f69fa7bSHong Zhang } else { 3392e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 339318e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33949566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33953782ecc7SHong Zhang if (!n) { 339618e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33973782ecc7SHong Zhang } else { 33989566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3400ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 34018f69fa7bSHong Zhang } 34023782ecc7SHong Zhang 3403e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 340418e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 34059566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 340618e627e3SHong Zhang if (!n) { 340718e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 340818e627e3SHong Zhang } else { 34099566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 34109566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 341118e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 341218e627e3SHong Zhang } 341318e627e3SHong Zhang 34149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3415462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 341618e627e3SHong Zhang sameRowDist = tsameDist[0]; 341718e627e3SHong Zhang } 341818e627e3SHong Zhang 341918e627e3SHong Zhang if (sameRowDist) { 3420b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34213b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34229566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3424b20e2604SHong Zhang } else { /* sameRowDist */ 34253b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34261358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34271358a193SHong Zhang PetscBool sorted; 34289566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34299566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34309566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 343108401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34321358a193SHong Zhang 34339566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34341358a193SHong Zhang if (sorted) { 34351358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34369566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34383782ecc7SHong Zhang } 34391358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 344048c0d076SHong Zhang IS iscol_sub; 34419566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 344248c0d076SHong Zhang if (iscol_sub) { 34439566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 344548c0d076SHong Zhang } 34461358a193SHong Zhang } 34471358a193SHong Zhang } 34481358a193SHong Zhang } 34493782ecc7SHong Zhang 3450bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34513782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34529566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 345328b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34543782ecc7SHong Zhang } else { 345548a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34561358a193SHong Zhang } 34573782ecc7SHong Zhang 34589566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34599566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34608f69fa7bSHong Zhang 3461b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34629566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3464b79d0421SJed Brown } 34653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34664aa3045dSJed Brown } 34674aa3045dSJed Brown 3468feb78a15SHong Zhang /*@C 346911a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3470feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3471feb78a15SHong Zhang 3472d083f849SBarry Smith Collective 3473feb78a15SHong Zhang 3474feb78a15SHong Zhang Input Parameters: 3475feb78a15SHong Zhang + comm - MPI communicator 3476feb78a15SHong Zhang . A - "diagonal" portion of matrix 3477b20e2604SHong Zhang . B - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine 34782ef1f0ffSBarry Smith - garray - global index of `B` columns 3479feb78a15SHong Zhang 3480feb78a15SHong Zhang Output Parameter: 34812ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 348227430b45SBarry Smith 3483feb78a15SHong Zhang Level: advanced 3484feb78a15SHong Zhang 3485feb78a15SHong Zhang Notes: 348611a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 348711a5261eSBarry Smith 34882ef1f0ffSBarry Smith `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore. 3489feb78a15SHong Zhang 34901cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3491feb78a15SHong Zhang @*/ 3492d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat) 3493d71ae5a4SJacob Faibussowitsch { 3494feb78a15SHong Zhang Mat_MPIAIJ *maij; 3495e489de8fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data, *bnew; 3496a5348796SHong Zhang PetscInt *oi = b->i, *oj = b->j, i, nz, col; 3497ce496241SStefano Zampini const PetscScalar *oa; 3498e489de8fSHong Zhang Mat Bnew; 3499feb78a15SHong Zhang PetscInt m, n, N; 35004ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3501feb78a15SHong Zhang 3502feb78a15SHong Zhang PetscFunctionBegin; 35039566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35049566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 350508401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 350637a5e0faSPierre Jolivet PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3507b6d9b4e0SHong Zhang /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */ 350808401ef6SPierre Jolivet /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */ 3509feb78a15SHong Zhang 3510e489de8fSHong Zhang /* Get global columns of mat */ 3511462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm)); 3512feb78a15SHong Zhang 35139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N)); 35144ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 35154ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 35164ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 35174ab4d6f4SRichard Tran Mills 351837a5e0faSPierre Jolivet if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3519feb78a15SHong Zhang maij = (Mat_MPIAIJ *)(*mat)->data; 3520feb78a15SHong Zhang 3521feb78a15SHong Zhang (*mat)->preallocated = PETSC_TRUE; 3522feb78a15SHong Zhang 35239566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 35249566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3525feb78a15SHong Zhang 3526e489de8fSHong Zhang /* Set A as diagonal portion of *mat */ 3527feb78a15SHong Zhang maij->A = A; 3528feb78a15SHong Zhang 3529a5348796SHong Zhang nz = oi[m]; 3530a5348796SHong Zhang for (i = 0; i < nz; i++) { 3531a5348796SHong Zhang col = oj[i]; 3532a5348796SHong Zhang oj[i] = garray[col]; 3533feb78a15SHong Zhang } 3534feb78a15SHong Zhang 3535e489de8fSHong Zhang /* Set Bnew as off-diagonal portion of *mat */ 35369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &oa)); 35379566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew)); 35389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &oa)); 3539e489de8fSHong Zhang bnew = (Mat_SeqAIJ *)Bnew->data; 3540e489de8fSHong Zhang bnew->maxnz = b->maxnz; /* allocated nonzeros of B */ 3541e489de8fSHong Zhang maij->B = Bnew; 3542d5761cdaSHong Zhang 354308401ef6SPierre Jolivet PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N); 3544d5761cdaSHong Zhang 3545d5761cdaSHong Zhang b->free_a = PETSC_FALSE; 3546d5761cdaSHong Zhang b->free_ij = PETSC_FALSE; 35479566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 3548d5761cdaSHong Zhang 3549e489de8fSHong Zhang bnew->free_a = PETSC_TRUE; 3550e489de8fSHong Zhang bnew->free_ij = PETSC_TRUE; 3551feb78a15SHong Zhang 3552a5348796SHong Zhang /* condense columns of maij->B */ 35539566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 35549566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 35559566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 35569566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 35579566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3559feb78a15SHong Zhang } 3560feb78a15SHong Zhang 3561ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35624aa3045dSJed Brown 3563d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3564d71ae5a4SJacob Faibussowitsch { 356598b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 356685f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 356798b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35681fd43edeSHong Zhang Mat M, Msub, B = a->B; 356998b658c4SHong Zhang MatScalar *aa; 357000e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3571a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 357298b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 357398b658c4SHong Zhang IS iscol_sub, iscmap; 357498b658c4SHong Zhang const PetscInt *is_idx, *cmap; 357518e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3576a31a438cSHong Zhang MPI_Comm comm; 35777e2c5f70SBarry Smith 3578a0ff6018SBarry Smith PetscFunctionBegin; 35799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3580d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35819566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 358228b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35839566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3584d5761cdaSHong Zhang 35859566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 358628b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3587d5761cdaSHong Zhang 35889566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 358928b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3590d5761cdaSHong Zhang 35919566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3592d5761cdaSHong Zhang 3593d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35943b00a383SHong Zhang PetscBool flg; 35953b00a383SHong Zhang 35969566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35979566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3598bcae8d28SHong Zhang 35993b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3600366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 36019566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3602366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3603462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3604366a327dSHong Zhang if (allcolumns) { 3605366a327dSHong Zhang iscol_sub = iscol_local; 36069566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 36079566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3608366a327dSHong Zhang 36093b00a383SHong Zhang } else { 36101358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3611244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 36129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 36139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 36149566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 36158d2139bdSHong Zhang count = 0; 3616a31a438cSHong Zhang k = 0; 3617a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3618a31a438cSHong Zhang j = is_idx[i]; 3619a31a438cSHong Zhang if (j >= cstart && j < cend) { 3620a31a438cSHong Zhang /* diagonal part of mat */ 36218d2139bdSHong Zhang idx[count] = j; 3622366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36234a3daf6eSHong Zhang } else if (Bn) { 3624a31a438cSHong Zhang /* off-diagonal part of mat */ 3625a31a438cSHong Zhang if (j == garray[k]) { 36268d2139bdSHong Zhang idx[count] = j; 3627a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3628a31a438cSHong Zhang } else if (j > garray[k]) { 3629a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3630a31a438cSHong Zhang if (j == garray[k]) { 3631a31a438cSHong Zhang idx[count] = j; 3632a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36338d2139bdSHong Zhang } 36348d2139bdSHong Zhang } 36358d2139bdSHong Zhang } 36368d2139bdSHong Zhang } 36379566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36388d2139bdSHong Zhang 36399566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36409566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36419566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3642b6d9b4e0SHong Zhang 36439566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3644a31a438cSHong Zhang } 36458b3fa1f7SHong Zhang 36463b00a383SHong Zhang /* (3) Create sequential Msub */ 36479566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3648d5761cdaSHong Zhang } 36498d2139bdSHong Zhang 36509566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 365157508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Msub->data; 365298b658c4SHong Zhang ii = aij->i; 36539566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3654a0ff6018SBarry Smith 3655a0ff6018SBarry Smith /* 3656a0ff6018SBarry Smith m - number of local rows 3657a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3658a0ff6018SBarry Smith rstart - first row in new global matrix generated 3659a0ff6018SBarry Smith */ 36609566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 366198b658c4SHong Zhang 36623b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36633b00a383SHong Zhang /* (4) Create parallel newmat */ 366498b658c4SHong Zhang PetscMPIInt rank, size; 3665bcae8d28SHong Zhang PetscInt csize; 366698b658c4SHong Zhang 36679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 366900e6dbe6SBarry Smith 3670a0ff6018SBarry Smith /* 367100e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 367200e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3673a0ff6018SBarry Smith */ 367400e6dbe6SBarry Smith 367500e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36769566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36776a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36789566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3679a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3680e2c4fddaSBarry Smith nlocal = m; 36816a6a5d1dSBarry Smith } else { 3682a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3683ab50ec6bSBarry Smith } 3684ab50ec6bSBarry Smith } else { 36856a6a5d1dSBarry Smith nlocal = csize; 36866a6a5d1dSBarry Smith } 36879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 368800e6dbe6SBarry Smith rstart = rend - nlocal; 3689aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 369000e6dbe6SBarry Smith 369100e6dbe6SBarry Smith /* next, compute all the lengths */ 369298b658c4SHong Zhang jj = aij->j; 36939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 369400e6dbe6SBarry Smith olens = dlens + m; 369500e6dbe6SBarry Smith for (i = 0; i < m; i++) { 369600e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 369700e6dbe6SBarry Smith olen = 0; 369800e6dbe6SBarry Smith dlen = 0; 369900e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 370015b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 370100e6dbe6SBarry Smith else dlen++; 370200e6dbe6SBarry Smith jj++; 370300e6dbe6SBarry Smith } 370400e6dbe6SBarry Smith olens[i] = olen; 370500e6dbe6SBarry Smith dlens[i] = dlen; 370600e6dbe6SBarry Smith } 3707b6d9b4e0SHong Zhang 37089566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 37099566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 371098b658c4SHong Zhang 37119566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 37129566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 37139566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 37149566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 37159566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 37169566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3717d5761cdaSHong Zhang 3718d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3719a0ff6018SBarry Smith M = *newmat; 37209566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 372108401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37229566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3723c48de900SBarry Smith /* 3724c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3725c48de900SBarry Smith rather than the slower MatSetValues(). 3726c48de900SBarry Smith */ 3727c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3728c48de900SBarry Smith M->assembled = PETSC_FALSE; 3729a0ff6018SBarry Smith } 3730548ecf4dSHong Zhang 37313b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37339566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 373498b658c4SHong Zhang 373598b658c4SHong Zhang jj = aij->j; 37369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3737a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3738a0ff6018SBarry Smith row = rstart + i; 373900e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 374015b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37419566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37429371c9d4SSatish Balay jj += nz; 37439371c9d4SSatish Balay aa += nz; 3744a0ff6018SBarry Smith } 37459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37469566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3747a0ff6018SBarry Smith 37489566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37499566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3750fee21e36SBarry Smith 37519566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 375298b658c4SHong Zhang 375398b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3754fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37553b00a383SHong Zhang *newmat = M; 3756f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37579566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 375898b658c4SHong Zhang 3759f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 376198b658c4SHong Zhang 3762f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3764bcae8d28SHong Zhang 3765bcae8d28SHong Zhang if (iscol_local) { 3766f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37679566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3768bcae8d28SHong Zhang } 376998b658c4SHong Zhang } 37703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3771a0ff6018SBarry Smith } 3772273d9f13SBarry Smith 3773df40acb1SHong Zhang /* 3774df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3775df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3776df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3777df40acb1SHong Zhang 377811a5261eSBarry Smith This requires a sequential iscol with all indices. 3779df40acb1SHong Zhang */ 3780d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3781d71ae5a4SJacob Faibussowitsch { 3782df40acb1SHong Zhang PetscMPIInt rank, size; 3783df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3784df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3785df40acb1SHong Zhang Mat M, Mreuse; 378698b658c4SHong Zhang MatScalar *aa, *vwork; 3787df40acb1SHong Zhang MPI_Comm comm; 3788df40acb1SHong Zhang Mat_SeqAIJ *aij; 37890b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3790df40acb1SHong Zhang 3791df40acb1SHong Zhang PetscFunctionBegin; 37929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3795df40acb1SHong Zhang 37960b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37979566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37989566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37990b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3800462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 38010b27a90eSHong Zhang 3802df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 38039566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 380428b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 38059566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3806df40acb1SHong Zhang } else { 38079566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3808df40acb1SHong Zhang } 3809df40acb1SHong Zhang 3810df40acb1SHong Zhang /* 3811df40acb1SHong Zhang m - number of local rows 3812df40acb1SHong Zhang n - number of columns (same on all processors) 3813df40acb1SHong Zhang rstart - first row in new global matrix generated 3814df40acb1SHong Zhang */ 38159566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 38169566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3817df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 381857508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3819df40acb1SHong Zhang ii = aij->i; 3820df40acb1SHong Zhang jj = aij->j; 3821df40acb1SHong Zhang 3822df40acb1SHong Zhang /* 3823df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3824df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3825df40acb1SHong Zhang */ 3826df40acb1SHong Zhang 3827df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3828df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38299566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3830df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3831df40acb1SHong Zhang nlocal = m; 3832df40acb1SHong Zhang } else { 3833df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3834df40acb1SHong Zhang } 3835df40acb1SHong Zhang } else { 3836df40acb1SHong Zhang nlocal = csize; 3837df40acb1SHong Zhang } 38389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3839df40acb1SHong Zhang rstart = rend - nlocal; 3840aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3841df40acb1SHong Zhang 3842df40acb1SHong Zhang /* next, compute all the lengths */ 38439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3844df40acb1SHong Zhang olens = dlens + m; 3845df40acb1SHong Zhang for (i = 0; i < m; i++) { 3846df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3847df40acb1SHong Zhang olen = 0; 3848df40acb1SHong Zhang dlen = 0; 3849df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3850df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3851df40acb1SHong Zhang else dlen++; 3852df40acb1SHong Zhang jj++; 3853df40acb1SHong Zhang } 3854df40acb1SHong Zhang olens[i] = olen; 3855df40acb1SHong Zhang dlens[i] = dlen; 3856df40acb1SHong Zhang } 38579566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38599566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38609566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38619566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38629566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3863df40acb1SHong Zhang } else { 3864df40acb1SHong Zhang PetscInt ml, nl; 3865df40acb1SHong Zhang 3866df40acb1SHong Zhang M = *newmat; 38679566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 386808401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38699566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3870df40acb1SHong Zhang /* 3871df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3872df40acb1SHong Zhang rather than the slower MatSetValues(). 3873df40acb1SHong Zhang */ 3874df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3875df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3876df40acb1SHong Zhang } 38779566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 387857508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3879df40acb1SHong Zhang ii = aij->i; 3880df40acb1SHong Zhang jj = aij->j; 38812e5835c6SStefano Zampini 38822e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3884df40acb1SHong Zhang for (i = 0; i < m; i++) { 3885df40acb1SHong Zhang row = rstart + i; 3886df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38879371c9d4SSatish Balay cwork = jj; 38888e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38899371c9d4SSatish Balay vwork = aa; 38908e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38919566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3892df40acb1SHong Zhang } 38939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3894df40acb1SHong Zhang 38959566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38969566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3897df40acb1SHong Zhang *newmat = M; 3898df40acb1SHong Zhang 3899df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3900df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 39019566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 39029566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3903df40acb1SHong Zhang } 39043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3905df40acb1SHong Zhang } 3906df40acb1SHong Zhang 3907ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3908d71ae5a4SJacob Faibussowitsch { 39096a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 39109f0612e4SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart; 3911ccd8e176SBarry Smith const PetscInt *JJ; 3912eeb24464SBarry Smith PetscBool nooffprocentries; 39136a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3914ccd8e176SBarry Smith 3915ccd8e176SBarry Smith PetscFunctionBegin; 39169566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 39179566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3918d0f46423SBarry Smith m = B->rmap->n; 3919d0f46423SBarry Smith cstart = B->cmap->rstart; 3920d0f46423SBarry Smith cend = B->cmap->rend; 3921d0f46423SBarry Smith rstart = B->rmap->rstart; 39229f0612e4SBarry Smith irstart = Ii[0]; 3923899cda47SBarry Smith 39249566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3925ccd8e176SBarry Smith 392676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39278f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3928ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39299f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 393008401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 393108401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 393208401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3933ecc77c7aSBarry Smith } 393476bd3646SJed Brown } 3935ecc77c7aSBarry Smith 39368f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3937b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39389f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 3939ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3940ccd8e176SBarry Smith d = 0; 39410daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39420daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3943ccd8e176SBarry Smith } 3944ccd8e176SBarry Smith d_nnz[i] = d; 3945ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3946ccd8e176SBarry Smith } 39479566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39489566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3949ccd8e176SBarry Smith 39508f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3951ccd8e176SBarry Smith ii = i + rstart; 39529f0612e4SBarry Smith PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES)); 3953ccd8e176SBarry Smith } 3954eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3955eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39569566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39579566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3958eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3959ccd8e176SBarry Smith 39606a3d2595SBarry Smith /* count number of entries below block diagonal */ 39616a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39626a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39636a3d2595SBarry Smith Aij->ld = ld; 39646a3d2595SBarry Smith for (i = 0; i < m; i++) { 39656a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39666a3d2595SBarry Smith j = 0; 3967ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39686a3d2595SBarry Smith ld[i] = j; 3969720a2405SPierre Jolivet if (J) J += nnz; 39706a3d2595SBarry Smith } 39716a3d2595SBarry Smith 39729566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3974ccd8e176SBarry Smith } 3975ccd8e176SBarry Smith 39761eea217eSSatish Balay /*@ 397711a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3978ccd8e176SBarry Smith (the default parallel PETSc format). 3979ccd8e176SBarry Smith 3980d083f849SBarry Smith Collective 3981ccd8e176SBarry Smith 3982ccd8e176SBarry Smith Input Parameters: 3983a1661176SMatthew Knepley + B - the matrix 3984d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3985d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3986ccd8e176SBarry Smith - v - optional values in the matrix 3987ccd8e176SBarry Smith 3988ccd8e176SBarry Smith Level: developer 3989ccd8e176SBarry Smith 399012251496SSatish Balay Notes: 39912ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39922ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 399311a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 399412251496SSatish Balay 39952ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 399612251496SSatish Balay 3997a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3998a4bd8bc0SBarry Smith 3999a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 4000a4bd8bc0SBarry Smith 4001a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 4002a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4003a4bd8bc0SBarry Smith 400412251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 400512251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 4006c5e4d11fSDmitry Karpeev as shown 400727430b45SBarry Smith .vb 400827430b45SBarry Smith 1 0 0 400927430b45SBarry Smith 2 0 3 P0 401027430b45SBarry Smith ------- 401127430b45SBarry Smith 4 5 6 P1 401227430b45SBarry Smith 401327430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 401427430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 401527430b45SBarry Smith j = {0,0,2} [size = 3] 401627430b45SBarry Smith v = {1,2,3} [size = 3] 401727430b45SBarry Smith 401827430b45SBarry Smith Process1 [P1] rows_owned=[2] 401927430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 402027430b45SBarry Smith j = {0,1,2} [size = 3] 402127430b45SBarry Smith v = {4,5,6} [size = 3] 402227430b45SBarry Smith .ve 402312251496SSatish Balay 4024fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4025a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4026ccd8e176SBarry Smith @*/ 4027d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4028d71ae5a4SJacob Faibussowitsch { 4029ccd8e176SBarry Smith PetscFunctionBegin; 4030cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4032ccd8e176SBarry Smith } 4033ccd8e176SBarry Smith 40345d83a8b1SBarry Smith /*@ 403511a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4036273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4037273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 403820f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4039273d9f13SBarry Smith 4040d083f849SBarry Smith Collective 4041273d9f13SBarry Smith 4042273d9f13SBarry Smith Input Parameters: 40431c4f3114SJed Brown + B - the matrix 4044273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4045273d9f13SBarry Smith (same value is used for all local rows) 4046273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4047273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40482ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4049273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40503287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40513287b5eaSJed Brown the diagonal entry even if it is zero. 4052273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4053273d9f13SBarry Smith submatrix (same value is used for all local rows). 4054273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4055273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40562ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4057273d9f13SBarry Smith structure. The size of this array is equal to the number 4058273d9f13SBarry Smith of local rows, i.e 'm'. 4059273d9f13SBarry Smith 40602920cce0SJacob Faibussowitsch Example Usage: 406127430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 406227430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 406327430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 406427430b45SBarry Smith as follows 406527430b45SBarry Smith 406627430b45SBarry Smith .vb 406727430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 406827430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 406927430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 407027430b45SBarry Smith ------------------------------------- 407127430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 407227430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 407327430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 407427430b45SBarry Smith ------------------------------------- 407527430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 407627430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 407727430b45SBarry Smith .ve 407827430b45SBarry Smith 407927430b45SBarry Smith This can be represented as a collection of submatrices as 408027430b45SBarry Smith .vb 408127430b45SBarry Smith A B C 408227430b45SBarry Smith D E F 408327430b45SBarry Smith G H I 408427430b45SBarry Smith .ve 408527430b45SBarry Smith 408627430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 408727430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 408827430b45SBarry Smith 408927430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 409027430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 409127430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 409227430b45SBarry Smith 409327430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 409427430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 409527430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 409627430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 409727430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 40985163b989SNuno Nobre matrix, and [DF] as another `MATSEQAIJ` matrix. 409927430b45SBarry Smith 410020f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 41015163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 41025163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 41035163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 41045163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 410520f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 410627430b45SBarry Smith .vb 410727430b45SBarry Smith proc0 dnz = 2, o_nz = 2 410827430b45SBarry Smith proc1 dnz = 3, o_nz = 2 410927430b45SBarry Smith proc2 dnz = 1, o_nz = 4 411027430b45SBarry Smith .ve 411120f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 411227430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 411327430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 411427430b45SBarry Smith 34 values. 411527430b45SBarry Smith 411620f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 411727430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 411820f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 411927430b45SBarry Smith .vb 412027430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 412127430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 412227430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 412327430b45SBarry Smith .ve 412427430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 412527430b45SBarry Smith hence pre-allocation is perfect. 412627430b45SBarry Smith 412727430b45SBarry Smith Level: intermediate 412827430b45SBarry Smith 412927430b45SBarry Smith Notes: 413049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 413149a6f317SBarry Smith 413227430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41330598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4134651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4135273d9f13SBarry Smith 4136273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4137273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4138273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4139273d9f13SBarry Smith 4140273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4141a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4142a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4143a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4144a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4145a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4146a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4147a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4148a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4149273d9f13SBarry Smith 41502ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4151273d9f13SBarry Smith 415227430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4153aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 415427430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4155aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4156aa95bbe8SBarry Smith 41571cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4158a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4159273d9f13SBarry Smith @*/ 4160d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4161d71ae5a4SJacob Faibussowitsch { 4162273d9f13SBarry Smith PetscFunctionBegin; 41636ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41646ba663aaSJed Brown PetscValidType(B, 1); 4165cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4167273d9f13SBarry Smith } 4168273d9f13SBarry Smith 416958d36128SBarry Smith /*@ 417011a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41718f8f2f0dSBarry Smith CSR format for the local rows. 41722fb0ec9aSBarry Smith 4173d083f849SBarry Smith Collective 41742fb0ec9aSBarry Smith 41752fb0ec9aSBarry Smith Input Parameters: 41762fb0ec9aSBarry Smith + comm - MPI communicator 417711a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41782fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4179d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4180d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4181d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4182d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41835693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41845693b835SJunchao Zhang . j - global column indices 4185f1f2ae84SBarry Smith - a - optional matrix values 41862fb0ec9aSBarry Smith 41872fb0ec9aSBarry Smith Output Parameter: 41882fb0ec9aSBarry Smith . mat - the matrix 418903bfb495SBarry Smith 41902fb0ec9aSBarry Smith Level: intermediate 41912fb0ec9aSBarry Smith 41922fb0ec9aSBarry Smith Notes: 41932ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4194d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4195d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41962fb0ec9aSBarry Smith 41972ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 419812251496SSatish Balay 41995693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4200a4bd8bc0SBarry Smith 42015693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4202a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4203a4bd8bc0SBarry Smith 420412251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4205d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4206c5e4d11fSDmitry Karpeev as shown 42072ef1f0ffSBarry Smith .vb 42082ef1f0ffSBarry Smith 1 0 0 42092ef1f0ffSBarry Smith 2 0 3 P0 42102ef1f0ffSBarry Smith ------- 42112ef1f0ffSBarry Smith 4 5 6 P1 42128f8f2f0dSBarry Smith 42132ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 42142ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 42152ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 42162ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 42172fb0ec9aSBarry Smith 42182ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 42192ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 42202ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 42212ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42222ef1f0ffSBarry Smith .ve 42232ef1f0ffSBarry Smith 4224d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42255693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42262fb0ec9aSBarry Smith @*/ 4227d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4228d71ae5a4SJacob Faibussowitsch { 42292fb0ec9aSBarry Smith PetscFunctionBegin; 423008401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 423108401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42329566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42339566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42349566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42359566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42369566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42382fb0ec9aSBarry Smith } 42392fb0ec9aSBarry Smith 42408f8f2f0dSBarry Smith /*@ 424111a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42422ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42432ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42446a3d2595SBarry Smith 42456a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42468f8f2f0dSBarry Smith 42478f8f2f0dSBarry Smith Collective 42488f8f2f0dSBarry Smith 42498f8f2f0dSBarry Smith Input Parameters: 42508f8f2f0dSBarry Smith + mat - the matrix 425111a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42528f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 425311a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42548f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 425511a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 425611a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42578f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42588f8f2f0dSBarry Smith . J - column indices 42598f8f2f0dSBarry Smith - v - matrix values 42608f8f2f0dSBarry Smith 42612ef1f0ffSBarry Smith Level: deprecated 42628f8f2f0dSBarry Smith 42631cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4264a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42658f8f2f0dSBarry Smith @*/ 4266d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4267d71ae5a4SJacob Faibussowitsch { 42686a3d2595SBarry Smith PetscInt nnz, i; 42698f8f2f0dSBarry Smith PetscBool nooffprocentries; 42708f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4271fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4272fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42738f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42746a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42756a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42768f8f2f0dSBarry Smith 42778f8f2f0dSBarry Smith PetscFunctionBegin; 4278aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 427908401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 428008401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 428108401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42828f8f2f0dSBarry Smith 42839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42858f8f2f0dSBarry Smith 42868f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42874c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42884c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42894c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42904c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42914c17f1ccSBarry Smith } 42924c17f1ccSBarry Smith } 42938f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42948f8f2f0dSBarry Smith Iii = Ii[i]; 42958f8f2f0dSBarry Smith ldi = ld[i]; 42968f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42989566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42999566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43008f8f2f0dSBarry Smith ad += md; 43018f8f2f0dSBarry Smith ao += nnz - md; 43028f8f2f0dSBarry Smith } 43038f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 43048f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 43059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43069566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43079566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43089566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43099566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43128f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 43133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43148f8f2f0dSBarry Smith } 43158f8f2f0dSBarry Smith 43166a3d2595SBarry Smith /*@ 431711a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 43186a3d2595SBarry Smith 43196a3d2595SBarry Smith Collective 43206a3d2595SBarry Smith 43216a3d2595SBarry Smith Input Parameters: 43226a3d2595SBarry Smith + mat - the matrix 43236a3d2595SBarry Smith - v - matrix values, stored by row 43246a3d2595SBarry Smith 43256a3d2595SBarry Smith Level: intermediate 43266a3d2595SBarry Smith 4327a4bd8bc0SBarry Smith Notes: 43286a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43296a3d2595SBarry Smith 4330a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4331a4bd8bc0SBarry Smith 43321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4333a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43346a3d2595SBarry Smith @*/ 4335d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4336d71ae5a4SJacob Faibussowitsch { 43376a3d2595SBarry Smith PetscInt nnz, i, m; 43386a3d2595SBarry Smith PetscBool nooffprocentries; 43396a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43406a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43416a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43426a3d2595SBarry Smith PetscScalar *ad, *ao; 43436a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43446a3d2595SBarry Smith PetscInt ldi, Iii, md; 43456a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43466a3d2595SBarry Smith 43476a3d2595SBarry Smith PetscFunctionBegin; 43486a3d2595SBarry Smith m = mat->rmap->n; 43496a3d2595SBarry Smith 43506a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43516a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43526a3d2595SBarry Smith Iii = 0; 43536a3d2595SBarry Smith for (i = 0; i < m; i++) { 43546a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43556a3d2595SBarry Smith ldi = ld[i]; 43566a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43576a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43586a3d2595SBarry Smith ad += md; 4359810441c8SPierre Jolivet if (ao) { 4360810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4361810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43626a3d2595SBarry Smith ao += nnz - md; 4363810441c8SPierre Jolivet } 43646a3d2595SBarry Smith Iii += nnz; 43656a3d2595SBarry Smith } 43666a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43676a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43686a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43696a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43706a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43716a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43726a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43736a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43746a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43756a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43776a3d2595SBarry Smith } 43786a3d2595SBarry Smith 43795d83a8b1SBarry Smith /*@ 438011a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4381273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4382273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43832ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4384273d9f13SBarry Smith 4385d083f849SBarry Smith Collective 4386273d9f13SBarry Smith 4387273d9f13SBarry Smith Input Parameters: 4388273d9f13SBarry Smith + comm - MPI communicator 438911a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4390273d9f13SBarry Smith This value should be the same as the local size used in creating the 4391273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4392273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 439345f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4394273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 439511a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 439611a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4397273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4398273d9f13SBarry Smith (same value is used for all local rows) 4399273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4400273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 44012ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4402273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4403273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4404273d9f13SBarry Smith submatrix (same value is used for all local rows). 4405273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4406273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 44072ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4408273d9f13SBarry Smith structure. The size of this array is equal to the number 4409273d9f13SBarry Smith of local rows, i.e 'm'. 4410273d9f13SBarry Smith 4411273d9f13SBarry Smith Output Parameter: 4412273d9f13SBarry Smith . A - the matrix 4413273d9f13SBarry Smith 441427430b45SBarry Smith Options Database Keys: 441527430b45SBarry Smith + -mat_no_inode - Do not use inodes 441627430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 441727430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4418727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4419727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 442027430b45SBarry Smith 44212ef1f0ffSBarry Smith Level: intermediate 44222ef1f0ffSBarry Smith 442327430b45SBarry Smith Notes: 442477433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4425f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 442611a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4427175b88e8SBarry Smith 442849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 442949a6f317SBarry Smith 44302ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44312ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4432273d9f13SBarry Smith storage requirements for this matrix. 4433273d9f13SBarry Smith 443411a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4435273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4436273d9f13SBarry Smith that argument. 4437273d9f13SBarry Smith 4438727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4439727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4440727bdf9bSBarry Smith 4441273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4442273d9f13SBarry Smith (possibly both). 4443273d9f13SBarry Smith 444433a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4445727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4446727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4447727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 444833a7c187SSatish Balay values corresponding to [m x N] submatrix. 4449273d9f13SBarry Smith 445033a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 445133a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4452df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 445333a7c187SSatish Balay 445433a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 445533a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 445633a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 445733a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 445833a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 445933a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 44600b4b7b1cSBarry Smith illustrates this concept. The two matrices, the DIAGONAL portion and 44610b4b7b1cSBarry Smith the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices. 446233a7c187SSatish Balay 446333a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 446433a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 446533a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 446633a7c187SSatish Balay local matrix (a rectangular submatrix). 4467273d9f13SBarry Smith 44682ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4469273d9f13SBarry Smith 447097d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44712ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4472da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4473da57b5cdSKarl Rupp .vb 44742ef1f0ffSBarry Smith MatCreate(..., &A); 44752ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44762ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44772ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4478da57b5cdSKarl Rupp .ve 447997d05335SKris Buschelman 4480273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4481273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4482273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4483273d9f13SBarry Smith 44842920cce0SJacob Faibussowitsch Example Usage: 4485273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4486273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4487273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4488efc377ccSKarl Rupp as follows 4489273d9f13SBarry Smith 4490273d9f13SBarry Smith .vb 4491273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4492273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4493273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4494273d9f13SBarry Smith ------------------------------------- 4495273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4496273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4497273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4498273d9f13SBarry Smith ------------------------------------- 4499273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4500273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4501273d9f13SBarry Smith .ve 4502273d9f13SBarry Smith 4503da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4504273d9f13SBarry Smith 4505273d9f13SBarry Smith .vb 4506273d9f13SBarry Smith A B C 4507273d9f13SBarry Smith D E F 4508273d9f13SBarry Smith G H I 4509273d9f13SBarry Smith .ve 4510273d9f13SBarry Smith 4511273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4512273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4513273d9f13SBarry Smith 4514273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4515273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4516273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4517273d9f13SBarry Smith 4518273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4519273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4520273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4521273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 452227430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 45235163b989SNuno Nobre matrix, and [DF] as another SeqAIJ matrix. 4524273d9f13SBarry Smith 45252ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45265163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 45275163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 45285163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 45295163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45302ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4531273d9f13SBarry Smith .vb 453227430b45SBarry Smith proc0 dnz = 2, o_nz = 2 453327430b45SBarry Smith proc1 dnz = 3, o_nz = 2 453427430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4535273d9f13SBarry Smith .ve 45362ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4537273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4538273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4539273d9f13SBarry Smith 34 values. 4540273d9f13SBarry Smith 45412ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4542a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4543da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4544273d9f13SBarry Smith .vb 454527430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 454627430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 454727430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4548273d9f13SBarry Smith .ve 4549273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4550273d9f13SBarry Smith hence pre-allocation is perfect. 4551273d9f13SBarry Smith 45521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4553727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4554727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4555273d9f13SBarry Smith @*/ 4556d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4557d71ae5a4SJacob Faibussowitsch { 4558b1d57f15SBarry Smith PetscMPIInt size; 4559273d9f13SBarry Smith 4560273d9f13SBarry Smith PetscFunctionBegin; 45619566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45629566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4564273d9f13SBarry Smith if (size > 1) { 45659566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45669566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4567273d9f13SBarry Smith } else { 45689566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4570273d9f13SBarry Smith } 45713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4572273d9f13SBarry Smith } 4573195d93cdSBarry Smith 45740b98dbb4SBarry Smith /*MC 45750b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix 45760b98dbb4SBarry Smith 45770b98dbb4SBarry Smith Synopsis: 45780b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45790b98dbb4SBarry Smith 45800b98dbb4SBarry Smith Not Collective 45810b98dbb4SBarry Smith 45820b98dbb4SBarry Smith Input Parameter: 45830b98dbb4SBarry Smith . A - the `MATMPIAIJ` matrix 45840b98dbb4SBarry Smith 45850b98dbb4SBarry Smith Output Parameters: 45860b98dbb4SBarry Smith + Ad - the diagonal portion of the matrix 45874cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45882ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45890b98dbb4SBarry Smith - ierr - error code 45900b98dbb4SBarry Smith 45910b98dbb4SBarry Smith Level: advanced 45920b98dbb4SBarry Smith 45930b98dbb4SBarry Smith Note: 45940b98dbb4SBarry Smith Use `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45950b98dbb4SBarry Smith 45961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()` 45970b98dbb4SBarry Smith M*/ 45980b98dbb4SBarry Smith 45990b98dbb4SBarry Smith /*MC 46000b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap` 46010b98dbb4SBarry Smith 46020b98dbb4SBarry Smith Synopsis: 46030b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 46040b98dbb4SBarry Smith 46050b98dbb4SBarry Smith Not Collective 46060b98dbb4SBarry Smith 46070b98dbb4SBarry Smith Input Parameters: 46080b98dbb4SBarry Smith + A - the `MATMPIAIJ` matrix 46090b98dbb4SBarry Smith . Ad - the diagonal portion of the matrix 46104cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 46112ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 46120b98dbb4SBarry Smith - ierr - error code 46130b98dbb4SBarry Smith 46140b98dbb4SBarry Smith Level: advanced 46150b98dbb4SBarry Smith 46161cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()` 46170b98dbb4SBarry Smith M*/ 46180b98dbb4SBarry Smith 4619127ca0efSMatthew Knepley /*@C 46200ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4621127ca0efSMatthew Knepley 46222ef1f0ffSBarry Smith Not Collective 4623127ca0efSMatthew Knepley 4624127ca0efSMatthew Knepley Input Parameter: 462511a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4626127ca0efSMatthew Knepley 4627127ca0efSMatthew Knepley Output Parameters: 462811a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 462911a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46302ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4631127ca0efSMatthew Knepley 46320ab4885dSBarry Smith Level: intermediate 46330ab4885dSBarry Smith 463411a5261eSBarry Smith Note: 46352ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46362ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46372ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4638127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4639127ca0efSMatthew Knepley 4640fe59aa6dSJacob Faibussowitsch Fortran Notes: 46410ab4885dSBarry Smith `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()` 4642127ca0efSMatthew Knepley 4643fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4644127ca0efSMatthew Knepley @*/ 4645d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4646d71ae5a4SJacob Faibussowitsch { 4647195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 464804cf37c7SBarry Smith PetscBool flg; 4649b1d57f15SBarry Smith 4650195d93cdSBarry Smith PetscFunctionBegin; 46519566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 465228b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 465321e72a00SBarry Smith if (Ad) *Ad = a->A; 465421e72a00SBarry Smith if (Ao) *Ao = a->B; 465521e72a00SBarry Smith if (colmap) *colmap = a->garray; 46563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4657195d93cdSBarry Smith } 4658a2243be0SBarry Smith 4659d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4660d71ae5a4SJacob Faibussowitsch { 4661110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46629b8102ccSHong Zhang PetscInt *indx; 4663110bb6e1SHong Zhang PetscScalar *values; 4664421ddf4dSJunchao Zhang MatType rootType; 46659b8102ccSHong Zhang 46669b8102ccSHong Zhang PetscFunctionBegin; 46679566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4668110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4669110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4670110bb6e1SHong Zhang 467148a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4672a22543b6SHong Zhang /* Check sum(n) = N */ 4673462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 467408401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4675a22543b6SHong Zhang 46769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46779b8102ccSHong Zhang rstart -= m; 46789b8102ccSHong Zhang 4679d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46809b8102ccSHong Zhang for (i = 0; i < m; i++) { 46819566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46829566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46839566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46849b8102ccSHong Zhang } 46859b8102ccSHong Zhang 46869566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46879566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46889566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46899566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46909566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46919566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46939566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4694d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46959566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46969b8102ccSHong Zhang } 46979b8102ccSHong Zhang 4698110bb6e1SHong Zhang /* numeric phase */ 46999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 47009b8102ccSHong Zhang for (i = 0; i < m; i++) { 47019566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 47029b8102ccSHong Zhang Ii = i + rstart; 47039566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 47049566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 47059b8102ccSHong Zhang } 47069566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 47079566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 47083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4709c5d6d63eSBarry Smith } 4710c5d6d63eSBarry Smith 471149abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data) 4712d71ae5a4SJacob Faibussowitsch { 471349abdd8aSBarry Smith Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data; 471451a7d1a8SHong Zhang 471551a7d1a8SHong Zhang PetscFunctionBegin; 47163ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 47179566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 47189566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 47199566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 47209566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 47219566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 47229566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 47239566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 47249566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 47259566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47269566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47279566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47289566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47299566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47309566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 473251a7d1a8SHong Zhang } 473351a7d1a8SHong Zhang 4734c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4735c6db04a5SJed Brown #include <petscbt.h> 47364ebed01fSBarry Smith 4737d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4738d71ae5a4SJacob Faibussowitsch { 4739ce94432eSBarry Smith MPI_Comm comm; 474055d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4741b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 47426497c311SBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m; 47436497c311SBarry Smith PetscMPIInt proc, k; 4744b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 47456497c311SBarry Smith PetscInt anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4746b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 474755d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 474855d1abb9SHong Zhang MPI_Status *status; 4749fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4750dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 475155d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4752776b82aeSLisandro Dalcin PetscContainer container; 475355d1abb9SHong Zhang 475455d1abb9SHong Zhang PetscFunctionBegin; 47559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47569566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47573c2c1871SHong Zhang 47589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 476055d1abb9SHong Zhang 47619566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 476228b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47639566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4765fff043a9SJunchao Zhang aa = a_a; 4766bf0cc555SLisandro Dalcin 476755d1abb9SHong Zhang bi = merge->bi; 476855d1abb9SHong Zhang bj = merge->bj; 476955d1abb9SHong Zhang buf_ri = merge->buf_ri; 477055d1abb9SHong Zhang buf_rj = merge->buf_rj; 477155d1abb9SHong Zhang 47729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47737a2fc3feSBarry Smith owners = merge->rowmap->range; 477455d1abb9SHong Zhang len_s = merge->len_s; 477555d1abb9SHong Zhang 477655d1abb9SHong Zhang /* send and recv matrix values */ 47779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47789566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 477955d1abb9SHong Zhang 47809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 478155d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 478255d1abb9SHong Zhang if (!len_s[proc]) continue; 478355d1abb9SHong Zhang i = owners[proc]; 47846497c311SBarry Smith PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 478555d1abb9SHong Zhang k++; 478655d1abb9SHong Zhang } 478755d1abb9SHong Zhang 47889566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47899566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47909566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 479155d1abb9SHong Zhang 47929566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47939566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 479455d1abb9SHong Zhang 479555d1abb9SHong Zhang /* insert mat values of mpimat */ 47969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47979566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 479855d1abb9SHong Zhang 479955d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 480055d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4801f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 480255d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4803a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 480455d1abb9SHong Zhang } 480555d1abb9SHong Zhang 480655d1abb9SHong Zhang /* set values of ba */ 48077a2fc3feSBarry Smith m = merge->rowmap->n; 480855d1abb9SHong Zhang for (i = 0; i < m; i++) { 480955d1abb9SHong Zhang arow = owners[rank] + i; 481055d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 481155d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 48129566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 481355d1abb9SHong Zhang 481455d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 481555d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 481655d1abb9SHong Zhang aj = a->j + ai[arow]; 4817fff043a9SJunchao Zhang aa = a_a + ai[arow]; 481855d1abb9SHong Zhang nextaj = 0; 481955d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 482055d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 482155d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 482255d1abb9SHong Zhang } 482355d1abb9SHong Zhang } 482455d1abb9SHong Zhang 482555d1abb9SHong Zhang /* add received vals into ba */ 482655d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 482755d1abb9SHong Zhang /* i-th row */ 482855d1abb9SHong Zhang if (i == *nextrow[k]) { 482955d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4830f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4831f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 483255d1abb9SHong Zhang nextaj = 0; 483355d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 483455d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 483555d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 483655d1abb9SHong Zhang } 483755d1abb9SHong Zhang } 48389371c9d4SSatish Balay nextrow[k]++; 48399371c9d4SSatish Balay nextai[k]++; 484055d1abb9SHong Zhang } 484155d1abb9SHong Zhang } 48429566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 484355d1abb9SHong Zhang } 48449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48459566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48469566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 484755d1abb9SHong Zhang 48489566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48499566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48509566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48519566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48529566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 485455d1abb9SHong Zhang } 485538f152feSBarry Smith 4856d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4857d71ae5a4SJacob Faibussowitsch { 485855a3bba9SHong Zhang Mat B_mpi; 4859c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4860b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4861b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4862d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 48636497c311SBarry Smith PetscInt len, *dnz, *onz, bs, cbs; 4864c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4865b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 486655d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 486758cb9c82SHong Zhang MPI_Status *status; 48680298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4869be0fcf8dSHong Zhang PetscBT lnkbt; 487051a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4871776b82aeSLisandro Dalcin PetscContainer container; 487202c68681SHong Zhang 4873e5f2cdd8SHong Zhang PetscFunctionBegin; 48749566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48753c2c1871SHong Zhang 487638f152feSBarry Smith /* make sure it is a PETSc comm */ 48779566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 488055d1abb9SHong Zhang 48819566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4883e5f2cdd8SHong Zhang 48846abd8857SHong Zhang /* determine row ownership */ 48859566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48869566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48879566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48889566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48899566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 489255d1abb9SHong Zhang 48937a2fc3feSBarry Smith m = merge->rowmap->n; 48947a2fc3feSBarry Smith owners = merge->rowmap->range; 48956abd8857SHong Zhang 48966abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48973e06a4e6SHong Zhang len_s = merge->len_s; 489851a7d1a8SHong Zhang 48992257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4900c2234fe3SHong Zhang merge->nsend = 0; 49016497c311SBarry Smith for (PetscMPIInt proc = 0; proc < size; proc++) { 49022257cef7SHong Zhang len_si[proc] = 0; 49033e06a4e6SHong Zhang if (proc == rank) { 49046abd8857SHong Zhang len_s[proc] = 0; 49053e06a4e6SHong Zhang } else { 49066497c311SBarry Smith PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc])); 49076497c311SBarry Smith PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */ 49083e06a4e6SHong Zhang } 49093e06a4e6SHong Zhang if (len_s[proc]) { 4910c2234fe3SHong Zhang merge->nsend++; 49112257cef7SHong Zhang nrows = 0; 49122257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49132257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 49142257cef7SHong Zhang } 49156497c311SBarry Smith PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc])); 49162257cef7SHong Zhang len += len_si[proc]; 4917409913e3SHong Zhang } 491858cb9c82SHong Zhang } 4919409913e3SHong Zhang 49202257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 49219566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 49229566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4923671beff6SHong Zhang 49243e06a4e6SHong Zhang /* post the Irecv of j-structure */ 49259566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49269566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 492702c68681SHong Zhang 49283e06a4e6SHong Zhang /* post the Isend of j-structure */ 49299566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49303e06a4e6SHong Zhang 49316497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 4932409913e3SHong Zhang if (!len_s[proc]) continue; 493302c68681SHong Zhang i = owners[proc]; 49346497c311SBarry Smith PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 493551a7d1a8SHong Zhang k++; 493651a7d1a8SHong Zhang } 493751a7d1a8SHong Zhang 49383e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49399566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49409566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 494102c68681SHong Zhang 494202c68681SHong Zhang /* send and recv i-structure */ 49439566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49449566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 494502c68681SHong Zhang 49469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49473e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49486497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 494902c68681SHong Zhang if (!len_s[proc]) continue; 49503e06a4e6SHong Zhang /* form outgoing message for i-structure: 49513e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49523e06a4e6SHong Zhang [1:nrows]: row index (global) 49533e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49543e06a4e6SHong Zhang */ 49552257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49563e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49573e06a4e6SHong Zhang buf_si[0] = nrows; 49583e06a4e6SHong Zhang buf_si_i[0] = 0; 49593e06a4e6SHong Zhang nrows = 0; 49603e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49613e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49623e06a4e6SHong Zhang if (anzi) { 49633e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49643e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49653e06a4e6SHong Zhang nrows++; 49663e06a4e6SHong Zhang } 49673e06a4e6SHong Zhang } 49686497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 496902c68681SHong Zhang k++; 49702257cef7SHong Zhang buf_si += len_si[proc]; 497102c68681SHong Zhang } 49722257cef7SHong Zhang 49739566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49749566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 497502c68681SHong Zhang 49769566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 497748a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49783e06a4e6SHong Zhang 49799566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49809566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49819566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49829566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49839566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49849566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49859566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 498658cb9c82SHong Zhang 4987bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 498858cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 499058cb9c82SHong Zhang bi[0] = 0; 499158cb9c82SHong Zhang 4992be0fcf8dSHong Zhang /* create and initialize a linked list */ 4993be0fcf8dSHong Zhang nlnk = N + 1; 49949566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 499558cb9c82SHong Zhang 4996bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4997bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49989566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49992205254eSKarl Rupp 500058cb9c82SHong Zhang current_space = free_space; 500158cb9c82SHong Zhang 5002bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 50039566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 50041d79065fSBarry Smith 50053e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 50062257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 50073e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 50083e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 5009a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 50103e06a4e6SHong Zhang } 50112257cef7SHong Zhang 5012d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 5013bcc1bcd5SHong Zhang len = 0; 501458cb9c82SHong Zhang for (i = 0; i < m; i++) { 501558cb9c82SHong Zhang bnzi = 0; 501658cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 501758cb9c82SHong Zhang arow = owners[rank] + i; 501858cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 501958cb9c82SHong Zhang aj = a->j + ai[arow]; 50209566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 502158cb9c82SHong Zhang bnzi += nlnk; 502258cb9c82SHong Zhang /* add received col data into lnk */ 502351a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 502455d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 50253e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50263e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50279566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50283e06a4e6SHong Zhang bnzi += nlnk; 50299371c9d4SSatish Balay nextrow[k]++; 50309371c9d4SSatish Balay nextai[k]++; 50313e06a4e6SHong Zhang } 503258cb9c82SHong Zhang } 5033bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 503458cb9c82SHong Zhang 503558cb9c82SHong Zhang /* if free space is not available, make more free space */ 503648a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 503758cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50389566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50399566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5040bcc1bcd5SHong Zhang 504158cb9c82SHong Zhang current_space->array += bnzi; 504258cb9c82SHong Zhang current_space->local_used += bnzi; 504358cb9c82SHong Zhang current_space->local_remaining -= bnzi; 504458cb9c82SHong Zhang 504558cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 504658cb9c82SHong Zhang } 5047bcc1bcd5SHong Zhang 50489566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5049bcc1bcd5SHong Zhang 50509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50519566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50529566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5053409913e3SHong Zhang 5054bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50559566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50569566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 505754b84b50SHong Zhang if (n == PETSC_DECIDE) { 50589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 505954b84b50SHong Zhang } else { 50609566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 506154b84b50SHong Zhang } 50629566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50639566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50649566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5065d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50669566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 506758cb9c82SHong Zhang 506890431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50696abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5070affca5deSHong Zhang merge->bi = bi; 5071affca5deSHong Zhang merge->bj = bj; 507202c68681SHong Zhang merge->buf_ri = buf_ri; 507302c68681SHong Zhang merge->buf_rj = buf_rj; 50740298fd71SBarry Smith merge->coi = NULL; 50750298fd71SBarry Smith merge->coj = NULL; 50760298fd71SBarry Smith merge->owners_co = NULL; 5077affca5deSHong Zhang 50789566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5079bf0cc555SLisandro Dalcin 5080affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50819566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50829566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 508349abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50849566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50859566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5086affca5deSHong Zhang *mpimat = B_mpi; 508738f152feSBarry Smith 50889566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5090e5f2cdd8SHong Zhang } 509125616d81SHong Zhang 5092cc4c1da9SBarry Smith /*@ 509311a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5094d4036a1aSHong Zhang matrices from each processor 5095d4036a1aSHong Zhang 5096d083f849SBarry Smith Collective 5097d4036a1aSHong Zhang 5098d4036a1aSHong Zhang Input Parameters: 5099d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5100d4036a1aSHong Zhang . seqmat - the input sequential matrices 510111a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 510211a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 510311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5104d4036a1aSHong Zhang 5105d4036a1aSHong Zhang Output Parameter: 5106d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5107d4036a1aSHong Zhang 5108d4036a1aSHong Zhang Level: advanced 5109d4036a1aSHong Zhang 511011a5261eSBarry Smith Note: 5111d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5112d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5113b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 51142ef1f0ffSBarry Smith 51151cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5116d4036a1aSHong Zhang @*/ 5117d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5118d71ae5a4SJacob Faibussowitsch { 51197e63b356SHong Zhang PetscMPIInt size; 512055d1abb9SHong Zhang 512155d1abb9SHong Zhang PetscFunctionBegin; 51229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 51237e63b356SHong Zhang if (size == 1) { 51249566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 51257e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51269566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51277e63b356SHong Zhang } else { 51289566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51297e63b356SHong Zhang } 51309566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51327e63b356SHong Zhang } 51339566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 513448a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51359566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51369566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 513855d1abb9SHong Zhang } 51394ebed01fSBarry Smith 5140bc08b0f1SBarry Smith /*@ 51412920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51428a9c020eSBarry Smith 51438a9c020eSBarry Smith Not Collective 51448a9c020eSBarry Smith 51452fe279fdSBarry Smith Input Parameter: 514620f4b53cSBarry Smith . A - the matrix 51478a9c020eSBarry Smith 51488a9c020eSBarry Smith Output Parameter: 51498a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51508a9c020eSBarry Smith 51518a9c020eSBarry Smith Level: developer 51528a9c020eSBarry Smith 51538a9c020eSBarry Smith Notes: 51542920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51552920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51562920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51572920cce0SJacob Faibussowitsch 515811a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51598a9c020eSBarry Smith 51602920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51612920cce0SJacob Faibussowitsch 516211a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51638a9c020eSBarry Smith 51641cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51658a9c020eSBarry Smith @*/ 5166d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5167d71ae5a4SJacob Faibussowitsch { 51688a9c020eSBarry Smith PetscBool mpi; 51698a9c020eSBarry Smith 51708a9c020eSBarry Smith PetscFunctionBegin; 51718a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51728a9c020eSBarry Smith if (mpi) { 51738a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51748a9c020eSBarry Smith } else { 51758a9c020eSBarry Smith *A_loc = A; 51768a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51778a9c020eSBarry Smith } 51783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51798a9c020eSBarry Smith } 51808a9c020eSBarry Smith 51818a9c020eSBarry Smith /*@ 51822920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 518325616d81SHong Zhang 518432fba14fSHong Zhang Not Collective 518525616d81SHong Zhang 518625616d81SHong Zhang Input Parameters: 518725616d81SHong Zhang + A - the matrix 518811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 518925616d81SHong Zhang 519025616d81SHong Zhang Output Parameter: 519125616d81SHong Zhang . A_loc - the local sequential matrix generated 519225616d81SHong Zhang 519325616d81SHong Zhang Level: developer 519425616d81SHong Zhang 519577c65a98SStefano Zampini Notes: 51962920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51972920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51982920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51992920cce0SJacob Faibussowitsch 520011a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 52018a9c020eSBarry Smith 52022920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 52032920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 52042920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 52052920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 520677c65a98SStefano Zampini 52071cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 520825616d81SHong Zhang @*/ 5209d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5210d71ae5a4SJacob Faibussowitsch { 521101b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5212b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5213b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5214ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5215ce496241SStefano Zampini PetscScalar *ca, *cam; 521677c65a98SStefano Zampini PetscMPIInt size; 5217d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 52185a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 52198661ff28SBarry Smith PetscBool match; 522025616d81SHong Zhang 522125616d81SHong Zhang PetscFunctionBegin; 52229566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 522328b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 52249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 522577c65a98SStefano Zampini if (size == 1) { 522677c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52279566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 522877c65a98SStefano Zampini *A_loc = mpimat->A; 522977c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52309566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 523177c65a98SStefano Zampini } 52323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 523377c65a98SStefano Zampini } 523470a9ba44SHong Zhang 52359566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5236f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5237f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 52389371c9d4SSatish Balay ai = a->i; 52399371c9d4SSatish Balay aj = a->j; 52409371c9d4SSatish Balay bi = b->i; 52419371c9d4SSatish Balay bj = b->j; 52429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5244ce496241SStefano Zampini aa = aav; 5245ce496241SStefano Zampini ba = bav; 524601b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5248dea91ad1SHong Zhang ci[0] = 0; 5249ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5252dea91ad1SHong Zhang k = 0; 525301b7ae99SHong Zhang for (i = 0; i < am; i++) { 52545a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52555a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 525601b7ae99SHong Zhang /* off-diagonal portion of A */ 52575a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52585a7d977cSHong Zhang col = cmap[*bj]; 52595a7d977cSHong Zhang if (col >= cstart) break; 52609371c9d4SSatish Balay cj[k] = col; 52619371c9d4SSatish Balay bj++; 52625a7d977cSHong Zhang ca[k++] = *ba++; 52635a7d977cSHong Zhang } 52645a7d977cSHong Zhang /* diagonal portion of A */ 52655a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52665a7d977cSHong Zhang cj[k] = cstart + *aj++; 52675a7d977cSHong Zhang ca[k++] = *aa++; 52685a7d977cSHong Zhang } 52695a7d977cSHong Zhang /* off-diagonal portion of A */ 52705a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52715a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52725a7d977cSHong Zhang ca[k++] = *ba++; 52735a7d977cSHong Zhang } 527425616d81SHong Zhang } 5275dea91ad1SHong Zhang /* put together the new matrix */ 52769566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5277dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5278dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5279dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5280e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5281e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5282dea91ad1SHong Zhang mat->nonew = 0; 52835a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52845a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5285fff043a9SJunchao Zhang ci = mat->i; 5286fff043a9SJunchao Zhang cj = mat->j; 52879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52885a7d977cSHong Zhang for (i = 0; i < am; i++) { 52895a7d977cSHong Zhang /* off-diagonal portion of A */ 52905a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52915a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52925a7d977cSHong Zhang col = cmap[*bj]; 52935a7d977cSHong Zhang if (col >= cstart) break; 52949371c9d4SSatish Balay *cam++ = *ba++; 52959371c9d4SSatish Balay bj++; 52965a7d977cSHong Zhang } 52975a7d977cSHong Zhang /* diagonal portion of A */ 5298ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5299a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 53005a7d977cSHong Zhang /* off-diagonal portion of A */ 5301f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 53029371c9d4SSatish Balay *cam++ = *ba++; 53039371c9d4SSatish Balay bj++; 5304f33d1a9aSHong Zhang } 53055a7d977cSHong Zhang } 53069566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 530798921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 53099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 53109566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 53113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 531225616d81SHong Zhang } 531325616d81SHong Zhang 5314ed502f03SStefano Zampini /*@ 531511a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 53164cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5317ed502f03SStefano Zampini 5318ed502f03SStefano Zampini Not Collective 5319ed502f03SStefano Zampini 5320ed502f03SStefano Zampini Input Parameters: 5321ed502f03SStefano Zampini + A - the matrix 532211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5323ed502f03SStefano Zampini 5324d8d19677SJose E. Roman Output Parameters: 53252ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5326ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5327ed502f03SStefano Zampini 5328ed502f03SStefano Zampini Level: developer 5329ed502f03SStefano Zampini 533011a5261eSBarry Smith Note: 53312ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53324cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5333ed502f03SStefano Zampini 53341cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5335ed502f03SStefano Zampini @*/ 5336d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5337d71ae5a4SJacob Faibussowitsch { 5338ed502f03SStefano Zampini Mat Ao, Ad; 5339ed502f03SStefano Zampini const PetscInt *cmap; 5340ed502f03SStefano Zampini PetscMPIInt size; 5341ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5342ed502f03SStefano Zampini 5343ed502f03SStefano Zampini PetscFunctionBegin; 53449566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5346ed502f03SStefano Zampini if (size == 1) { 5347ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53489566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5349ed502f03SStefano Zampini *A_loc = Ad; 5350ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53519566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5352ed502f03SStefano Zampini } 53539566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5355ed502f03SStefano Zampini } 53569566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53579566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5358ed502f03SStefano Zampini if (f) { 53599566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5360ed502f03SStefano Zampini } else { 5361ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5362ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5363ed502f03SStefano Zampini Mat_SeqAIJ *c; 5364ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5365ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5366ed502f03SStefano Zampini PetscInt *ci, *cj; 5367ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5368ed502f03SStefano Zampini PetscScalar *ca; 5369ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5370ed502f03SStefano Zampini 53719566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53729566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5375ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5376ed502f03SStefano Zampini PetscInt k; 53779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5380ed502f03SStefano Zampini ci[0] = 0; 5381ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5382ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5383ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5384ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5385ed502f03SStefano Zampini /* diagonal portion of A */ 5386ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5387ed502f03SStefano Zampini cj[k] = *aj++; 5388ed502f03SStefano Zampini ca[k] = *aa++; 5389ed502f03SStefano Zampini } 5390ed502f03SStefano Zampini /* off-diagonal portion of A */ 5391ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5392ed502f03SStefano Zampini cj[k] = dn + *bj++; 5393ed502f03SStefano Zampini ca[k] = *ba++; 5394ed502f03SStefano Zampini } 5395ed502f03SStefano Zampini } 5396ed502f03SStefano Zampini /* put together the new matrix */ 53979566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5398ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5399ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5400ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5401ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5402ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5403ed502f03SStefano Zampini c->nonew = 0; 54049566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5405ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 54069566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5407ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5408ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5409ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5410ed502f03SStefano Zampini /* diagonal portion of A */ 5411ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5412ed502f03SStefano Zampini /* off-diagonal portion of A */ 5413ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5414ed502f03SStefano Zampini } 54159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 541698921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 54179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 54189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5419ed502f03SStefano Zampini if (glob) { 5420ed502f03SStefano Zampini PetscInt cst, *gidx; 5421ed502f03SStefano Zampini 54229566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 54239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5424ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5425ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54269566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5427ed502f03SStefano Zampini } 5428ed502f03SStefano Zampini } 54299566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5431ed502f03SStefano Zampini } 5432ed502f03SStefano Zampini 543332fba14fSHong Zhang /*@C 543411a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 543532fba14fSHong Zhang 543632fba14fSHong Zhang Not Collective 543732fba14fSHong Zhang 543832fba14fSHong Zhang Input Parameters: 543932fba14fSHong Zhang + A - the matrix 544011a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 544120f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 544220f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 544332fba14fSHong Zhang 544432fba14fSHong Zhang Output Parameter: 544532fba14fSHong Zhang . A_loc - the local sequential matrix generated 544632fba14fSHong Zhang 544732fba14fSHong Zhang Level: developer 544832fba14fSHong Zhang 54491cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 545032fba14fSHong Zhang @*/ 5451d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5452d71ae5a4SJacob Faibussowitsch { 545332fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 545432fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 545532fba14fSHong Zhang IS isrowa, iscola; 545632fba14fSHong Zhang Mat *aloc; 54574a2b5492SBarry Smith PetscBool match; 545832fba14fSHong Zhang 545932fba14fSHong Zhang PetscFunctionBegin; 54609566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 546128b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54629566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 546332fba14fSHong Zhang if (!row) { 54649371c9d4SSatish Balay start = A->rmap->rstart; 54659371c9d4SSatish Balay end = A->rmap->rend; 54669566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 546732fba14fSHong Zhang } else { 546832fba14fSHong Zhang isrowa = *row; 546932fba14fSHong Zhang } 547032fba14fSHong Zhang if (!col) { 5471d0f46423SBarry Smith start = A->cmap->rstart; 547232fba14fSHong Zhang cmap = a->garray; 5473d0f46423SBarry Smith nzA = a->A->cmap->n; 5474d0f46423SBarry Smith nzB = a->B->cmap->n; 54759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 547632fba14fSHong Zhang ncols = 0; 547732fba14fSHong Zhang for (i = 0; i < nzB; i++) { 547832fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 547932fba14fSHong Zhang else break; 548032fba14fSHong Zhang } 548132fba14fSHong Zhang imark = i; 548232fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 548332fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54849566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 548532fba14fSHong Zhang } else { 548632fba14fSHong Zhang iscola = *col; 548732fba14fSHong Zhang } 548832fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 549032fba14fSHong Zhang aloc[0] = *A_loc; 549132fba14fSHong Zhang } 54929566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5493109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54949566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5495109e0772SStefano Zampini } 549632fba14fSHong Zhang *A_loc = aloc[0]; 54979566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 549848a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 549948a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 55009566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 55013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 550232fba14fSHong Zhang } 550332fba14fSHong Zhang 55045c65b9ecSFande Kong /* 55055c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 55065c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 55075c65b9ecSFande Kong * on a global size. 55085c65b9ecSFande Kong * */ 5509ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5510d71ae5a4SJacob Faibussowitsch { 55115c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5512f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5513131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5514131c27b5Sprj- PetscMPIInt owner; 55155c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 55165c65b9ecSFande Kong const PetscInt *lrowindices; 55175c65b9ecSFande Kong PetscSF sf, osf; 55185c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 55195c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 55205c65b9ecSFande Kong MPI_Comm comm; 55215c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5522fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 55235c65b9ecSFande Kong 55245c65b9ecSFande Kong PetscFunctionBegin; 55259566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55265c65b9ecSFande Kong /* plocalsize is the number of roots 55275c65b9ecSFande Kong * nrows is the number of leaves 55285c65b9ecSFande Kong * */ 55299566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55309566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55319566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55329566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55335c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55345c65b9ecSFande Kong /* Find a remote index and an owner for a row 55355c65b9ecSFande Kong * The row could be local or remote 55365c65b9ecSFande Kong * */ 553734bcad68SFande Kong owner = 0; 553834bcad68SFande Kong lidx = 0; 55399566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55405c65b9ecSFande Kong iremote[i].index = lidx; 55415c65b9ecSFande Kong iremote[i].rank = owner; 55425c65b9ecSFande Kong } 55435c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55449566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5545f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55465c65b9ecSFande Kong * offsets 55475c65b9ecSFande Kong * */ 55489566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55499566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55509566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5551bc8e477aSFande Kong 55529566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55539566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55549566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55555c65b9ecSFande Kong roffsets[0] = 0; 55565c65b9ecSFande Kong roffsets[1] = 0; 55575c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55584cf0e950SBarry Smith /* diagonal */ 55595c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55604cf0e950SBarry Smith /* off-diagonal */ 55615c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55625c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55635c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55645c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55655c65b9ecSFande Kong } 55669566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55679566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55685c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55709566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55719566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55739566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55749566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55759566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55765c65b9ecSFande Kong dntotalcols = 0; 55775c65b9ecSFande Kong ontotalcols = 0; 5578bc8e477aSFande Kong ncol = 0; 55795c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55805c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5581bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55824cf0e950SBarry Smith /* diagonal */ 55835c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55844cf0e950SBarry Smith /* off-diagonal */ 55855c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55865c65b9ecSFande Kong } 55875c65b9ecSFande Kong /* We do not need to figure the right number of columns 55885c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55895c65b9ecSFande Kong * */ 55909566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55919566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55929566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55935c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55944cf0e950SBarry Smith /* diagonal */ 55959566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55964cf0e950SBarry Smith /* off-diagonal */ 55979566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55984cf0e950SBarry Smith /* diagonal */ 55999566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 56004cf0e950SBarry Smith /* off-diagonal */ 56019566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 56025c65b9ecSFande Kong dntotalcols = 0; 56035c65b9ecSFande Kong ontotalcols = 0; 56045c65b9ecSFande Kong ntotalcols = 0; 56055c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 560634bcad68SFande Kong owner = 0; 56079566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 56085c65b9ecSFande Kong /* Set iremote for diag matrix */ 56095c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 56105c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 56115c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 56125c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 56135c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 56145c65b9ecSFande Kong } 56154cf0e950SBarry Smith /* off-diagonal */ 56165c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 56175c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 56185c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 56195c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 56205c65b9ecSFande Kong } 56215c65b9ecSFande Kong } 56229566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 56239566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 56249566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 56259566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56265c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56275c65b9ecSFande Kong * Diag matrix 56285c65b9ecSFande Kong * */ 56299566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56309566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56319566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56325c65b9ecSFande Kong 56339566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56344cf0e950SBarry Smith /* off-diagonal */ 56359566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56369566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56379566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56404cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56429566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56439566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56445c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56455c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56469566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56475c65b9ecSFande Kong /* We want P_oth store global indices */ 56489566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56495c65b9ecSFande Kong /* Use memory scalable approach */ 56509566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56519566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56539566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56545c65b9ecSFande Kong /* Convert back to local indices */ 56555c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56569566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56575c65b9ecSFande Kong nout = 0; 56589566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 565908401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56609566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56615c65b9ecSFande Kong /* Exchange values */ 56629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56639566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56665c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56675c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56689566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56699566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56705c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56719566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56729566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56739566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56749566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56765c65b9ecSFande Kong } 56775c65b9ecSFande Kong 56785c65b9ecSFande Kong /* 56795c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56805c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56815c65b9ecSFande Kong * */ 5682d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5683d71ae5a4SJacob Faibussowitsch { 56845c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5685bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5686bc8e477aSFande Kong IS rows, map; 5687bc8e477aSFande Kong PetscHMapI hamp; 5688bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56895c65b9ecSFande Kong MPI_Comm comm; 56905c65b9ecSFande Kong PetscSF sf, osf; 5691bc8e477aSFande Kong PetscBool has; 56925c65b9ecSFande Kong 56935c65b9ecSFande Kong PetscFunctionBegin; 56949566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56959566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56965c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56975c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56985c65b9ecSFande Kong * */ 56995c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 57005c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5701eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 57029566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5703bc8e477aSFande Kong count = 0; 5704bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5705bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5706bc8e477aSFande Kong key = a->garray[i] / dof; 57079566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5708bc8e477aSFande Kong if (!has) { 5709bc8e477aSFande Kong mapping[i] = count; 57109566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5711bc8e477aSFande Kong } else { 5712bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5713bc8e477aSFande Kong mapping[i] = count - 1; 57145c65b9ecSFande Kong } 5715bc8e477aSFande Kong } 57169566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 57179566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5718eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 57199566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 57205c65b9ecSFande Kong off = 0; 57219566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 57229566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 57239566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 57249566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 57255c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57269566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57279566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57289566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57299566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57309566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57315c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57325c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 573335cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5734fff043a9SJunchao Zhang */ 5735fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5736fff043a9SJunchao Zhang 57379566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57389566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 573908401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57405c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57415c65b9ecSFande Kong /* Update values in place */ 57429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57449566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57459566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57469566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57479566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57489566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57499566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57506718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57519566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57535c65b9ecSFande Kong } 57545c65b9ecSFande Kong 575525616d81SHong Zhang /*@C 575620f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 575725616d81SHong Zhang 5758c3339decSBarry Smith Collective 575925616d81SHong Zhang 576025616d81SHong Zhang Input Parameters: 576111a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 576211a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 576311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 576425616d81SHong Zhang 5765f1a722f8SMatthew G. Knepley Output Parameters: 576627430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 576727430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5768f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 576925616d81SHong Zhang 577025616d81SHong Zhang Level: developer 577125616d81SHong Zhang 577220f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 577325616d81SHong Zhang @*/ 5774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5775d71ae5a4SJacob Faibussowitsch { 5776899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5777b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 577825616d81SHong Zhang IS isrowb, iscolb; 57790298fd71SBarry Smith Mat *bseq = NULL; 578025616d81SHong Zhang 578125616d81SHong Zhang PetscFunctionBegin; 578220f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 578320f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57849566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 578525616d81SHong Zhang 578625616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5787d0f46423SBarry Smith start = A->cmap->rstart; 578825616d81SHong Zhang cmap = a->garray; 5789d0f46423SBarry Smith nzA = a->A->cmap->n; 5790d0f46423SBarry Smith nzB = a->B->cmap->n; 57919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 579225616d81SHong Zhang ncols = 0; 57930390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 579425616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 579525616d81SHong Zhang else break; 579625616d81SHong Zhang } 579725616d81SHong Zhang imark = i; 57980390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57990390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 58009566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 58019566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 580225616d81SHong Zhang } else { 580308401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 58049371c9d4SSatish Balay isrowb = *rowb; 58059371c9d4SSatish Balay iscolb = *colb; 58069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 580725616d81SHong Zhang bseq[0] = *B_seq; 580825616d81SHong Zhang } 58099566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 581025616d81SHong Zhang *B_seq = bseq[0]; 58119566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 581225616d81SHong Zhang if (!rowb) { 58139566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 581425616d81SHong Zhang } else { 581525616d81SHong Zhang *rowb = isrowb; 581625616d81SHong Zhang } 581725616d81SHong Zhang if (!colb) { 58189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 581925616d81SHong Zhang } else { 582025616d81SHong Zhang *colb = iscolb; 582125616d81SHong Zhang } 58229566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 58233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 582425616d81SHong Zhang } 5825429d309bSHong Zhang 5826f8487c73SHong Zhang /* 582727430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 582801b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5829429d309bSHong Zhang 5830c3339decSBarry Smith Collective 5831429d309bSHong Zhang 5832429d309bSHong Zhang Input Parameters: 583327430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 583427430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5835429d309bSHong Zhang 5836429d309bSHong Zhang Output Parameter: 58370298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58380298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58390298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5840598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5841429d309bSHong Zhang 584211a5261eSBarry Smith Developer Note: 584311a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58446eb45d04SBarry Smith for this matrix. This is not desirable.. 58456eb45d04SBarry Smith 5846429d309bSHong Zhang Level: developer 5847429d309bSHong Zhang 5848f8487c73SHong Zhang */ 58496497c311SBarry Smith 5850d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5851d71ae5a4SJacob Faibussowitsch { 5852899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 58534b8d542aSHong Zhang VecScatter ctx; 5854ce94432eSBarry Smith MPI_Comm comm; 58553515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58566497c311SBarry Smith PetscMPIInt nrecvs, nsends; 58573515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5858277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 58596497c311SBarry Smith PetscInt i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len; 5860277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5861ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5862ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5863429d309bSHong Zhang 5864429d309bSHong Zhang PetscFunctionBegin; 58659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5867a7c7454dSHong Zhang 586820f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 586920f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58709566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5872a6b2eed2SHong Zhang 5873ec07b8f8SHong Zhang if (size == 1) { 5874ec07b8f8SHong Zhang startsj_s = NULL; 5875ec07b8f8SHong Zhang bufa_ptr = NULL; 587652f7967eSHong Zhang *B_oth = NULL; 58773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5878ec07b8f8SHong Zhang } 5879ec07b8f8SHong Zhang 5880fa83eaafSHong Zhang ctx = a->Mvctx; 58814b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58824b8d542aSHong Zhang 58839566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58843515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58859566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58869566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5888ddea5d60SJunchao Zhang rwaits = reqs; 58898e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5890429d309bSHong Zhang 5891b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5892429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5893a6b2eed2SHong Zhang /* i-array */ 5894a6b2eed2SHong Zhang /* post receives */ 58959566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5896a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 589774268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5898e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58996497c311SBarry Smith PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5900429d309bSHong Zhang } 5901a6b2eed2SHong Zhang 5902a6b2eed2SHong Zhang /* pack the outgoing message */ 59039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 59042205254eSKarl Rupp 59052205254eSKarl Rupp sstartsj[0] = 0; 59062205254eSKarl Rupp rstartsj[0] = 0; 5907a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 59083515ee7fSJunchao Zhang if (nsends) { 59093515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 59109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 59113515ee7fSJunchao Zhang } 5912a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 59133515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5914e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 591587025532SHong Zhang for (j = 0; j < nrows; j++) { 5916d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5917e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 59189566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 59192205254eSKarl Rupp 5920e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 59212205254eSKarl Rupp 5922e42f35eeSHong Zhang len += ncols; 59239566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5924e42f35eeSHong Zhang } 5925a6b2eed2SHong Zhang k++; 5926429d309bSHong Zhang } 59276497c311SBarry Smith PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59282205254eSKarl Rupp 5929dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5930429d309bSHong Zhang } 593187025532SHong Zhang /* recvs and sends of i-array are completed */ 59329566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59339566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5934e42f35eeSHong Zhang 5935a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5938a6b2eed2SHong Zhang 593987025532SHong Zhang /* create i-array of B_oth */ 59409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59412205254eSKarl Rupp 594287025532SHong Zhang b_othi[0] = 0; 5943a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5944a6b2eed2SHong Zhang k = 0; 5945a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59463515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59473515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 594887025532SHong Zhang for (j = 0; j < nrows; j++) { 594987025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59509566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5951f91af8c7SBarry Smith k++; 5952a6b2eed2SHong Zhang } 5953dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5954a6b2eed2SHong Zhang } 59559566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5956a6b2eed2SHong Zhang 59576aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5960a6b2eed2SHong Zhang 596187025532SHong Zhang /* j-array */ 5962a6b2eed2SHong Zhang /* post receives of j-array */ 5963a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 596487025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59656497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5966a6b2eed2SHong Zhang } 5967e42f35eeSHong Zhang 5968e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59693515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5970a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5971e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5972a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 597387025532SHong Zhang for (j = 0; j < nrows; j++) { 5974d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5975e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59769566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5977ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59789566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5979e42f35eeSHong Zhang } 598087025532SHong Zhang } 59816497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 598287025532SHong Zhang } 598387025532SHong Zhang 598487025532SHong Zhang /* recvs and sends of j-array are completed */ 59859566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 598687025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5987b7f45c76SHong Zhang sstartsj = *startsj_s; 59881d79065fSBarry Smith rstartsj = *startsj_r; 598987025532SHong Zhang bufa = *bufa_ptr; 59909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5991ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 599287025532SHong Zhang 599387025532SHong Zhang /* a-array */ 599487025532SHong Zhang /* post receives of a-array */ 599587025532SHong Zhang for (i = 0; i < nrecvs; i++) { 599687025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59976497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 599887025532SHong Zhang } 5999e42f35eeSHong Zhang 6000e42f35eeSHong Zhang /* pack the outgoing message a-array */ 60013515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 600287025532SHong Zhang for (i = 0; i < nsends; i++) { 6003e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 600487025532SHong Zhang bufA = bufa + sstartsj[i]; 600587025532SHong Zhang for (j = 0; j < nrows; j++) { 6006d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 6007e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 60089566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 6009ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 60109566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 6011e42f35eeSHong Zhang } 6012a6b2eed2SHong Zhang } 60136497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 6014a6b2eed2SHong Zhang } 601587025532SHong Zhang /* recvs and sends of a-array are completed */ 60169566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 60179566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 6018a6b2eed2SHong Zhang 601987025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 6020dd460d27SBarry Smith Mat_SeqAIJ *b_oth; 6021dd460d27SBarry Smith 6022a6b2eed2SHong Zhang /* put together the new matrix */ 60239566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 6024a6b2eed2SHong Zhang 6025a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6026a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 602787025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6028e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6029e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 603087025532SHong Zhang b_oth->nonew = 0; 6031a6b2eed2SHong Zhang 60329566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6033b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60349566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60359566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6036dea91ad1SHong Zhang } else { 6037b7f45c76SHong Zhang *startsj_s = sstartsj; 60381d79065fSBarry Smith *startsj_r = rstartsj; 603987025532SHong Zhang *bufa_ptr = bufa; 604087025532SHong Zhang } 6041fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6043dea91ad1SHong Zhang } 60443515ee7fSJunchao Zhang 60459566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60469566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60479566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6049429d309bSHong Zhang } 6050ccd8e176SBarry Smith 6051cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6052cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6053ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60549779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6055a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6056191b95cbSRichard Tran Mills #endif 6057ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6058cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60595d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6060cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60615d7652ecSHong Zhang #endif 6062d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6063d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6064d24d4204SJose E. Roman #endif 606563c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 606663c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 606763c07aadSStefano Zampini #endif 60683338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60693338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60703338378cSStefano Zampini #endif 6071d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6072d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6073d5e393b6SSuyash Tandon #endif 60743d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60753d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60763d0639e7SStefano Zampini #endif 6077d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60784222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60794222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 608017667f90SBarry Smith 6081fc4dec0aSBarry Smith /* 6082fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6083fc4dec0aSBarry Smith 6084fc4dec0aSBarry Smith n p p 60852da392ccSBarry Smith [ ] [ ] [ ] 60862da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60872da392ccSBarry Smith [ ] [ ] [ ] 6088fc4dec0aSBarry Smith 6089fc4dec0aSBarry Smith */ 6090d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6091d71ae5a4SJacob Faibussowitsch { 6092fc4dec0aSBarry Smith Mat At, Bt, Ct; 6093fc4dec0aSBarry Smith 6094fc4dec0aSBarry Smith PetscFunctionBegin; 60959566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60969566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 6097fb842aefSJose E. Roman PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct)); 60989566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60999566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 61007fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 61019566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 61029566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 61033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6104fc4dec0aSBarry Smith } 6105fc4dec0aSBarry Smith 6106d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6107d71ae5a4SJacob Faibussowitsch { 61086718818eSStefano Zampini PetscBool cisdense; 6109fc4dec0aSBarry Smith 6110fc4dec0aSBarry Smith PetscFunctionBegin; 611108401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 61129566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 61139566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6114d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 611548a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 61169566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6117f75ecaa4SHong Zhang 61184222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 61193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6120fc4dec0aSBarry Smith } 6121fc4dec0aSBarry Smith 6122d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6123d71ae5a4SJacob Faibussowitsch { 61244222ddf1SHong Zhang Mat_Product *product = C->product; 61254222ddf1SHong Zhang Mat A = product->A, B = product->B; 6126fc4dec0aSBarry Smith 6127fc4dec0aSBarry Smith PetscFunctionBegin; 612820f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 612920f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61304222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61314222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6133fc4dec0aSBarry Smith } 6134fc4dec0aSBarry Smith 6135d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6136d71ae5a4SJacob Faibussowitsch { 61374222ddf1SHong Zhang Mat_Product *product = C->product; 61384222ddf1SHong Zhang 61394222ddf1SHong Zhang PetscFunctionBegin; 614048a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61424222ddf1SHong Zhang } 6143394ed5ebSJunchao Zhang 614427430b45SBarry Smith /* 614527430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6146394ed5ebSJunchao Zhang 6147394ed5ebSJunchao Zhang Input Parameters: 6148394ed5ebSJunchao Zhang 6149651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6150651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6151394ed5ebSJunchao Zhang 6152158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6153394ed5ebSJunchao Zhang 6154394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6155394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6156394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6157394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6158394ed5ebSJunchao Zhang 6159394ed5ebSJunchao Zhang Similar for Set2. 6160394ed5ebSJunchao Zhang 6161394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6162394ed5ebSJunchao Zhang 6163158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6164394ed5ebSJunchao Zhang 6165394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6166394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6167394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6168394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6169394ed5ebSJunchao Zhang */ 6170d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6171d71ae5a4SJacob Faibussowitsch { 6172394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6173394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6174394ed5ebSJunchao Zhang 6175394ed5ebSJunchao Zhang PetscFunctionBegin; 61769566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6177394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6178394ed5ebSJunchao Zhang i[0] = 0; 6179394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6180394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6181394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6182394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6183394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6184394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6185394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6186394ed5ebSJunchao Zhang j[t] = j1[b1]; 6187394ed5ebSJunchao Zhang imap1[t1] = t; 6188394ed5ebSJunchao Zhang imap2[t2] = t; 6189394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6190394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61919371c9d4SSatish Balay t1++; 61929371c9d4SSatish Balay t2++; 61939371c9d4SSatish Balay t++; 6194394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6195394ed5ebSJunchao Zhang j[t] = j1[b1]; 6196394ed5ebSJunchao Zhang imap1[t1] = t; 6197394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61989371c9d4SSatish Balay t1++; 61999371c9d4SSatish Balay t++; 6200394ed5ebSJunchao Zhang } else { 6201394ed5ebSJunchao Zhang j[t] = j2[b2]; 6202394ed5ebSJunchao Zhang imap2[t2] = t; 6203394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 62049371c9d4SSatish Balay t2++; 62059371c9d4SSatish Balay t++; 6206394ed5ebSJunchao Zhang } 6207394ed5ebSJunchao Zhang } 6208394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6209394ed5ebSJunchao Zhang while (b1 < e1) { 6210394ed5ebSJunchao Zhang j[t] = j1[b1]; 6211394ed5ebSJunchao Zhang imap1[t1] = t; 6212394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 62139371c9d4SSatish Balay t1++; 62149371c9d4SSatish Balay t++; 6215394ed5ebSJunchao Zhang } 6216394ed5ebSJunchao Zhang while (b2 < e2) { 6217394ed5ebSJunchao Zhang j[t] = j2[b2]; 6218394ed5ebSJunchao Zhang imap2[t2] = t; 6219394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 62209371c9d4SSatish Balay t2++; 62219371c9d4SSatish Balay t++; 6222394ed5ebSJunchao Zhang } 62236497c311SBarry Smith PetscCall(PetscIntCast(t, i + r + 1)); 6224394ed5ebSJunchao Zhang } 62253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6226394ed5ebSJunchao Zhang } 6227394ed5ebSJunchao Zhang 622827430b45SBarry Smith /* 622927430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6230394ed5ebSJunchao Zhang 6231394ed5ebSJunchao Zhang Input Parameters: 6232394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6233394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6234394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6235394ed5ebSJunchao Zhang 6236394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6237394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6238394ed5ebSJunchao Zhang 6239394ed5ebSJunchao Zhang Output Parameters: 6240394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6241394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6242394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6243394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6244394ed5ebSJunchao Zhang 6245394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6246158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6247158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6248394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6249394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6250394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6251394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6252394ed5ebSJunchao Zhang 6253394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6254394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6255394ed5ebSJunchao Zhang 6256394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6257394ed5ebSJunchao Zhang 6258158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6259394ed5ebSJunchao Zhang */ 6260d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6261d71ae5a4SJacob Faibussowitsch { 6262394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6263394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6264394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6265394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6266394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6267394ed5ebSJunchao Zhang 6268394ed5ebSJunchao Zhang PetscFunctionBegin; 62699566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62709566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6271394ed5ebSJunchao Zhang m = rend - rstart; 6272394ed5ebSJunchao Zhang 6273651b1cf9SStefano Zampini /* Skip negative rows */ 6274651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62759371c9d4SSatish Balay if (i[k] >= 0) break; 6276394ed5ebSJunchao Zhang 6277394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6278394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6279394ed5ebSJunchao Zhang */ 6280394ed5ebSJunchao Zhang while (k < n) { 6281394ed5ebSJunchao Zhang row = i[k]; 6282394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62839371c9d4SSatish Balay for (s = k; s < n; s++) 62849371c9d4SSatish Balay if (i[s] != row) break; 6285651b1cf9SStefano Zampini 62861690c2aeSBarry Smith /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */ 6287394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 62881690c2aeSBarry Smith if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX; 628954c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6290394ed5ebSJunchao Zhang } 62919566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6292158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6293394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6294394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6295394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6296394ed5ebSJunchao Zhang 6297394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6298394ed5ebSJunchao Zhang Atot += mid - k; 6299394ed5ebSJunchao Zhang Btot += s - mid; 6300394ed5ebSJunchao Zhang 6301651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6302394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6303394ed5ebSJunchao Zhang col = j[p]; 63049371c9d4SSatish Balay do { 63051690c2aeSBarry Smith j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */ 63069371c9d4SSatish Balay p++; 6307651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6308394ed5ebSJunchao Zhang Annz++; 6309394ed5ebSJunchao Zhang } 6310394ed5ebSJunchao Zhang 6311651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6312394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6313394ed5ebSJunchao Zhang col = j[p]; 6314d71ae5a4SJacob Faibussowitsch do { 6315d71ae5a4SJacob Faibussowitsch p++; 6316d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6317394ed5ebSJunchao Zhang Bnnz++; 6318394ed5ebSJunchao Zhang } 6319394ed5ebSJunchao Zhang k = s; 6320394ed5ebSJunchao Zhang } 6321394ed5ebSJunchao Zhang 6322394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6323158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6324158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6325158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6326158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6327394ed5ebSJunchao Zhang 63286aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6329394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6330394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6331394ed5ebSJunchao Zhang k = rowBegin[r]; 6332394ed5ebSJunchao Zhang mid = rowMid[r]; 6333394ed5ebSJunchao Zhang s = rowEnd[r]; 63348e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63358e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6336394ed5ebSJunchao Zhang Atot += mid - k; 6337394ed5ebSJunchao Zhang Btot += s - mid; 6338394ed5ebSJunchao Zhang 6339394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6340394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6341394ed5ebSJunchao Zhang col = j[p]; 6342394ed5ebSJunchao Zhang q = p; 6343d71ae5a4SJacob Faibussowitsch do { 6344d71ae5a4SJacob Faibussowitsch p++; 6345d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6346394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6347394ed5ebSJunchao Zhang Annz++; 6348394ed5ebSJunchao Zhang } 6349394ed5ebSJunchao Zhang 6350394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6351394ed5ebSJunchao Zhang col = j[p]; 6352394ed5ebSJunchao Zhang q = p; 6353d71ae5a4SJacob Faibussowitsch do { 6354d71ae5a4SJacob Faibussowitsch p++; 6355d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6356394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6357394ed5ebSJunchao Zhang Bnnz++; 6358394ed5ebSJunchao Zhang } 6359394ed5ebSJunchao Zhang } 6360394ed5ebSJunchao Zhang /* Output */ 6361394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6362394ed5ebSJunchao Zhang *Annz_ = Annz; 6363394ed5ebSJunchao Zhang *Atot_ = Atot; 6364394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6365394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6366394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6367394ed5ebSJunchao Zhang *Btot_ = Btot; 6368394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6370394ed5ebSJunchao Zhang } 6371394ed5ebSJunchao Zhang 637227430b45SBarry Smith /* 637327430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6374158ec288SJunchao Zhang 6375158ec288SJunchao Zhang Input Parameters: 6376158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6377158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6378158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6379651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6380158ec288SJunchao Zhang 6381158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6382158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6383158ec288SJunchao Zhang 6384158ec288SJunchao Zhang Example: 6385158ec288SJunchao Zhang nnz1 = 4 6386158ec288SJunchao Zhang nnz = 6 6387158ec288SJunchao Zhang imap = [1,3,4,5] 6388158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6389158ec288SJunchao Zhang then, 6390158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6391158ec288SJunchao Zhang */ 6392d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6393d71ae5a4SJacob Faibussowitsch { 6394158ec288SJunchao Zhang PetscCount k, p; 6395158ec288SJunchao Zhang 6396158ec288SJunchao Zhang PetscFunctionBegin; 6397158ec288SJunchao Zhang jmap_new[0] = 0; 6398158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6399158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6400158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6401158ec288SJunchao Zhang } 6402158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 64033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6404158ec288SJunchao Zhang } 6405158ec288SJunchao Zhang 640649abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data) 64072c4ab24aSJunchao Zhang { 640849abdd8aSBarry Smith MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data; 64092c4ab24aSJunchao Zhang 64102c4ab24aSJunchao Zhang PetscFunctionBegin; 64112c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 64122c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 64132c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 64142c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 64152c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 64162c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 64172c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 64182c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 64192c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 64202c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 64212c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 64222c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 64232c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 64242c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 64252c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 64262c4ab24aSJunchao Zhang } 64272c4ab24aSJunchao Zhang 6428d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6429d71ae5a4SJacob Faibussowitsch { 6430394ed5ebSJunchao Zhang MPI_Comm comm; 6431394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6432394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6433394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6434394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64352c4ab24aSJunchao Zhang PetscContainer container; 64362c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6437394ed5ebSJunchao Zhang 6438394ed5ebSJunchao Zhang PetscFunctionBegin; 64399566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6441cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6442eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6443cbc6b225SStefano Zampini #else 64449566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6445cbc6b225SStefano Zampini #endif 64469566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6447cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6448cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6449cbc6b225SStefano Zampini 64509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64539566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64549566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64559566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64569566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64579566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64589566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6459394ed5ebSJunchao Zhang 64606aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6461394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6462394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6463e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6464e8729f6fSJunchao Zhang 6465e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6466394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6467394ed5ebSJunchao Zhang 6468394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6469394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6470394ed5ebSJunchao Zhang will have positive row indices. 6471394ed5ebSJunchao Zhang */ 6472394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 64731690c2aeSBarry Smith if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN; /* e.g., -2^31, minimal to move them ahead */ 64741690c2aeSBarry Smith else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */ 6475f7d195e4SLawrence Mitchell else { 6476f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 64771690c2aeSBarry Smith if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */ 6478f7d195e4SLawrence Mitchell } 6479394ed5ebSJunchao Zhang } 6480394ed5ebSJunchao Zhang 6481da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64829566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6483651b1cf9SStefano Zampini 6484651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6485651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64861690c2aeSBarry Smith if (i1[k] > PETSC_INT_MIN) break; 64876497c311SBarry Smith PetscCount i1start = k; 6488651b1cf9SStefano Zampini 64891690c2aeSBarry Smith PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */ 64901690c2aeSBarry Smith for (; k < rem; k++) i1[k] += PETSC_INT_MAX; /* Revert row indices of local rows*/ 6491394ed5ebSJunchao Zhang 6492394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6493394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6494394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6495394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6496394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6497394ed5ebSJunchao Zhang const PetscInt *ranges; 6498394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6499394ed5ebSJunchao Zhang 65009566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 65019566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6502394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6503394ed5ebSJunchao Zhang PetscMPIInt owner; 6504394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6505cbc6b225SStefano Zampini 6506394ed5ebSJunchao Zhang /* Locate a row range */ 6507394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 65089566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6509394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6510394ed5ebSJunchao Zhang 6511394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 65129566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6513394ed5ebSJunchao Zhang 6514394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6515394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6516394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6517394ed5ebSJunchao Zhang PetscInt *nentries2; 6518394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6519cbc6b225SStefano Zampini 65209566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 65219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 65229566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 65239566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6524394ed5ebSJunchao Zhang sendto = sendto2; 6525394ed5ebSJunchao Zhang nentries = nentries2; 6526394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6527394ed5ebSJunchao Zhang } 6528394ed5ebSJunchao Zhang sendto[nsend] = owner; 65296497c311SBarry Smith PetscCall(PetscIntCast(p - k, &nentries[nsend])); 6530394ed5ebSJunchao Zhang nsend++; 6531394ed5ebSJunchao Zhang k = p; 6532394ed5ebSJunchao Zhang } 6533394ed5ebSJunchao Zhang 6534394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6535394ed5ebSJunchao Zhang PetscSF sf1; 6536394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6537394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6538394ed5ebSJunchao Zhang PetscInt *offsets; 6539394ed5ebSJunchao Zhang PetscSFNode *iremote; 6540394ed5ebSJunchao Zhang 65419566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6544394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6545394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6546394ed5ebSJunchao Zhang iremote[k].index = 0; 6547394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 654854c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6549394ed5ebSJunchao Zhang } 65509566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65519566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65529566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65539566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6554e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6555394ed5ebSJunchao Zhang 6556394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6557394ed5ebSJunchao Zhang PetscSF sf2; 6558394ed5ebSJunchao Zhang nroots = nroots2; 6559394ed5ebSJunchao Zhang nleaves = nleaves2; 65609566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65619566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6563394ed5ebSJunchao Zhang p = 0; 6564394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 656554c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6566394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6567394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 65686497c311SBarry Smith PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index)); 6569394ed5ebSJunchao Zhang } 6570394ed5ebSJunchao Zhang } 65719566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6572394ed5ebSJunchao Zhang 6573394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6574394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6575394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65769566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6577834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6578834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6579de0a9f35SPierre Jolivet PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem); 6580de0a9f35SPierre Jolivet PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem); 6581834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6582834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6583834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6584834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6585394ed5ebSJunchao Zhang 65869566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65879566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6588394ed5ebSJunchao Zhang 6589394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6590394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65919566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6592394ed5ebSJunchao Zhang 6593651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6594651b1cf9SStefano Zampini PetscCount *Cperm1; 6595834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6596de0a9f35SPierre Jolivet PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem); 6597651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6598834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6599651b1cf9SStefano Zampini 6600651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6601651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6602651b1cf9SStefano Zampini PetscBool hypre; 660317b874c6SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre)); 6604651b1cf9SStefano Zampini if (hypre) { 6605651b1cf9SStefano Zampini PetscInt *minj; 6606651b1cf9SStefano Zampini PetscBT hasdiag; 6607651b1cf9SStefano Zampini 6608651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6609651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 66101690c2aeSBarry Smith for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX; 6611651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6612651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6613651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6614651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6615651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6616651b1cf9SStefano Zampini } 6617651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6618651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6619651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6620651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6621651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6622651b1cf9SStefano Zampini } 6623651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6624651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6625651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6626651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6627651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6628651b1cf9SStefano Zampini } 6629651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6630651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6631651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6632651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6633651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6634651b1cf9SStefano Zampini } 6635651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6636651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6637651b1cf9SStefano Zampini } 6638651b1cf9SStefano Zampini 6639651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6640651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6641651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6642651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6643394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6644394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6645394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6646394ed5ebSJunchao Zhang 6647651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66489566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6649651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66509566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6651394ed5ebSJunchao Zhang 6652394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6653394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6654394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6655394ed5ebSJunchao Zhang 66569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6660394ed5ebSJunchao Zhang 6661394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6662158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6663158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6664158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6665158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6666394ed5ebSJunchao Zhang 66679566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66689566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6669158ec288SJunchao Zhang 6670158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6671158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6672158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6673158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6674158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6675158ec288SJunchao Zhang 6676158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6677158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6678158ec288SJunchao Zhang 6679158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6680158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6681158ec288SJunchao Zhang 6682158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6683158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6684158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6685158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66869566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66879566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6688e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66899566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6690394ed5ebSJunchao Zhang 6691158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6692158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6693158ec288SJunchao Zhang 6694394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6695394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6696394ed5ebSJunchao Zhang PetscInt *Aj_new; 66979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66989566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66999566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6700394ed5ebSJunchao Zhang Aj = Aj_new; 6701394ed5ebSJunchao Zhang } 6702394ed5ebSJunchao Zhang 6703394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6704394ed5ebSJunchao Zhang PetscInt *Bj_new; 67059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 67069566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 67079566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6708394ed5ebSJunchao Zhang Bj = Bj_new; 6709394ed5ebSJunchao Zhang } 6710394ed5ebSJunchao Zhang 6711cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6712394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6713cbc6b225SStefano Zampini MatType rtype; 6714394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6715cf8ba265SJunchao Zhang PetscObjectState state; 67169566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 67179566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6718394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 67199371c9d4SSatish Balay if (cstart) { 67209371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 67219371c9d4SSatish Balay } 6722c508b908SBarry Smith 67239566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6724c508b908SBarry Smith 6725c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6726c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 67279566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 67280da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6729c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6730c508b908SBarry Smith 6731c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6732c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 67339566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 67340da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6735c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6736c508b908SBarry Smith 67379566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67385bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6739cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6740462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6741cbc6b225SStefano Zampini 6742394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6743394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 67449f0612e4SBarry Smith a->free_a = PETSC_TRUE; 67459f0612e4SBarry Smith a->free_ij = PETSC_TRUE; 67469f0612e4SBarry Smith b->free_a = PETSC_TRUE; 67479f0612e4SBarry Smith b->free_ij = PETSC_TRUE; 674817b874c6SStefano Zampini a->maxnz = a->nz; 674917b874c6SStefano Zampini b->maxnz = b->nz; 6750394ed5ebSJunchao Zhang 6751cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67529566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67539566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67559566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6756cbc6b225SStefano Zampini 67572c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67582c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67592c4ab24aSJunchao Zhang coo->n = coo_n; 67602c4ab24aSJunchao Zhang coo->sf = sf2; 67612c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67622c4ab24aSJunchao Zhang coo->recvlen = nroots; 67632c4ab24aSJunchao Zhang coo->Annz = Annz; 67642c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67652c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67662c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67672c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67682c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67692c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67702c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67712c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67722c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67732c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67742c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67752c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67762c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67772c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67782c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67792c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67802c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67812c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67822c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67832c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67842c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67852c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 678649abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67872c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67882c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6790394ed5ebSJunchao Zhang } 6791394ed5ebSJunchao Zhang 6792d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6793d71ae5a4SJacob Faibussowitsch { 6794394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6795394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6796394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67972c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67982c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67992c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 68002c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 68012c4ab24aSJunchao Zhang const PetscCount *Cperm1; 68022c4ab24aSJunchao Zhang PetscContainer container; 68032c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6804394ed5ebSJunchao Zhang 6805394ed5ebSJunchao Zhang PetscFunctionBegin; 68062c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 68072c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 68082c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 68092c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 68102c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 68112c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 68122c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 68132c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 68142c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 68152c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 68162c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 68172c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 68182c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 68192c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 68202c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 68212c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 68222c4ab24aSJunchao Zhang 68239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 68249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6825394ed5ebSJunchao Zhang 6826394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 68272c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6828394ed5ebSJunchao Zhang 6829394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 68302c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6831394ed5ebSJunchao Zhang /* Add local entries to A and B */ 68322c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6833da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6834158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6835158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6836394ed5ebSJunchao Zhang } 68372c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6838158ec288SJunchao Zhang PetscScalar sum = 0.0; 6839158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6840158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6841394ed5ebSJunchao Zhang } 68422c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6843394ed5ebSJunchao Zhang 6844394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68452c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6846394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6847394ed5ebSJunchao Zhang } 68482c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6849394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6850394ed5ebSJunchao Zhang } 68519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6854394ed5ebSJunchao Zhang } 6855394ed5ebSJunchao Zhang 6856ccd8e176SBarry Smith /*MC 6857ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6858ccd8e176SBarry Smith 6859ccd8e176SBarry Smith Options Database Keys: 686011a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6861ccd8e176SBarry Smith 6862ccd8e176SBarry Smith Level: beginner 68630cd7f59aSBarry Smith 68640cd7f59aSBarry Smith Notes: 68652ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68660cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68670cd7f59aSBarry Smith in the matrix 68680cd7f59aSBarry Smith 686911a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 687011a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6871ccd8e176SBarry Smith 68721cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6873ccd8e176SBarry Smith M*/ 6874d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6875d71ae5a4SJacob Faibussowitsch { 6876ccd8e176SBarry Smith Mat_MPIAIJ *b; 6877ccd8e176SBarry Smith PetscMPIInt size; 6878ccd8e176SBarry Smith 6879ccd8e176SBarry Smith PetscFunctionBegin; 68809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68812205254eSKarl Rupp 68824dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6883ccd8e176SBarry Smith B->data = (void *)b; 6884aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6885ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6886ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6887ccd8e176SBarry Smith b->size = size; 68882205254eSKarl Rupp 68899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6890ccd8e176SBarry Smith 6891ccd8e176SBarry Smith /* build cache for off array entries formed */ 68929566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68932205254eSKarl Rupp 6894ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6895f4259b30SLisandro Dalcin b->colmap = NULL; 6896f4259b30SLisandro Dalcin b->garray = NULL; 6897ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6898ccd8e176SBarry Smith 6899ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 69000298fd71SBarry Smith b->lvec = NULL; 69010298fd71SBarry Smith b->Mvctx = NULL; 6902ccd8e176SBarry Smith 6903ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6904f4259b30SLisandro Dalcin b->rowindices = NULL; 6905f4259b30SLisandro Dalcin b->rowvalues = NULL; 6906ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6907ccd8e176SBarry Smith 6908f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 69090298fd71SBarry Smith b->spptr = NULL; 6910f60c3dc2SHong Zhang 69119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 69129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 69139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 69149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 69159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 69169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 6917674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ)); 69189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 69199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 69209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 69219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 69223d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 69239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 69243d0639e7SStefano Zampini #endif 6925d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6926d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6927d5e393b6SSuyash Tandon #endif 69283d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 69299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 69303d0639e7SStefano Zampini #endif 69319779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 69329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6933191b95cbSRichard Tran Mills #endif 69349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 69359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 69369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 69379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 69385d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 69399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 69405d7652ecSHong Zhang #endif 6941d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6943d24d4204SJose E. Roman #endif 69449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69463dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69493dad0653Sstefano_zampini #endif 69509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69549566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6956ccd8e176SBarry Smith } 695781824310SBarry Smith 69585d83a8b1SBarry Smith /*@ 695911a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 696003bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 696103bfb495SBarry Smith 6962d083f849SBarry Smith Collective 696303bfb495SBarry Smith 696403bfb495SBarry Smith Input Parameters: 696503bfb495SBarry Smith + comm - MPI communicator 696611a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 696703bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6968d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 69692ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69702ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69712ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6972483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 697304ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 697403bfb495SBarry Smith . a - matrix values 6975483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69762ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 697703bfb495SBarry Smith - oa - matrix values 697803bfb495SBarry Smith 697903bfb495SBarry Smith Output Parameter: 698003bfb495SBarry Smith . mat - the matrix 698103bfb495SBarry Smith 698203bfb495SBarry Smith Level: advanced 698303bfb495SBarry Smith 698403bfb495SBarry Smith Notes: 6985f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6986292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 698703bfb495SBarry Smith 69882ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 698903bfb495SBarry Smith 69902ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 699103bfb495SBarry Smith 69927b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69937b55108eSBarry Smith 6994dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6995dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6996dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6997dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 699811a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6999dca341c0SJed Brown communication if it is known that only local entries will be set. 700003bfb495SBarry Smith 70011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 7002db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 70032b26979fSBarry Smith @*/ 7004d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 7005d71ae5a4SJacob Faibussowitsch { 700603bfb495SBarry Smith Mat_MPIAIJ *maij; 700703bfb495SBarry Smith 700803bfb495SBarry Smith PetscFunctionBegin; 700908401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 7010aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 7011aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 70129566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 70139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 70149566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 701503bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 70162205254eSKarl Rupp 70178d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 701803bfb495SBarry Smith 70199566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 70209566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 702103bfb495SBarry Smith 70229566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 70239566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 702403bfb495SBarry Smith 70259566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 70269566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 70279566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 70289566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 70299566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 70303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 703103bfb495SBarry Smith } 703203bfb495SBarry Smith 70334e84afc0SStefano Zampini typedef struct { 70344e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 70354e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 70364e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 70374e84afc0SStefano Zampini 70384e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 70394e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 70404e84afc0SStefano Zampini PetscScalar *bufa; 70414e84afc0SStefano Zampini Mat P_oth; 70424e84afc0SStefano Zampini 70434e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7044ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70454e84afc0SStefano Zampini 7046ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70474e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70484e84afc0SStefano Zampini of the temporary storage */ 70494e84afc0SStefano Zampini PetscBool reusesym; 70504e84afc0SStefano Zampini 70514e84afc0SStefano Zampini /* support for COO values insertion */ 7052ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7053ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7054ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7055ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7056c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7057c215019aSStefano Zampini PetscMemType mtype; 70584e84afc0SStefano Zampini 70594e84afc0SStefano Zampini /* customization */ 70604e84afc0SStefano Zampini PetscBool abmerge; 7061abb89eb1SStefano Zampini PetscBool P_oth_bind; 70624e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70634e84afc0SStefano Zampini 7064ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7065d71ae5a4SJacob Faibussowitsch { 70664e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70674e84afc0SStefano Zampini PetscInt i; 70684e84afc0SStefano Zampini 70694e84afc0SStefano Zampini PetscFunctionBegin; 70709566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70719566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70729566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70739566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70759566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70769566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 707748a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70789566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70799566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70809566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70819566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70829566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70839566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70854e84afc0SStefano Zampini } 70864e84afc0SStefano Zampini 7087fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7088fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7089fff043a9SJunchao Zhang */ 7090d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7091d71ae5a4SJacob Faibussowitsch { 7092c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7093c215019aSStefano Zampini 7094c215019aSStefano Zampini PetscFunctionBegin; 70959566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7096c215019aSStefano Zampini if (f) { 70979566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7098c215019aSStefano Zampini } else { 7099c215019aSStefano Zampini const PetscScalar *vv; 7100c215019aSStefano Zampini 71019566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7102c215019aSStefano Zampini if (n && idx) { 7103c215019aSStefano Zampini PetscScalar *w = v; 7104c215019aSStefano Zampini const PetscInt *oi = idx; 7105c215019aSStefano Zampini PetscInt j; 7106c215019aSStefano Zampini 7107c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7108c215019aSStefano Zampini } else { 71099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7110c215019aSStefano Zampini } 71119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7112c215019aSStefano Zampini } 71133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7114c215019aSStefano Zampini } 7115c215019aSStefano Zampini 7116d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7117d71ae5a4SJacob Faibussowitsch { 71184e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71194e84afc0SStefano Zampini PetscInt i, n_d, n_o; 71204e84afc0SStefano Zampini 71214e84afc0SStefano Zampini PetscFunctionBegin; 71224e84afc0SStefano Zampini MatCheckProduct(C, 1); 712328b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 71244e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 71254e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 712648a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 712748a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 71284e84afc0SStefano Zampini } 71294e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7130abb89eb1SStefano Zampini 7131abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 713208401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 71339566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7134abb89eb1SStefano Zampini } 71354e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 71366497c311SBarry Smith PetscInt noff; 71374e84afc0SStefano Zampini 71386497c311SBarry Smith PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff)); 71394e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 71404e84afc0SStefano Zampini if (noff) { 71416497c311SBarry Smith PetscInt nown; 7142c215019aSStefano Zampini 71436497c311SBarry Smith PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown)); 71449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71464e84afc0SStefano Zampini n_o += noff; 71474e84afc0SStefano Zampini n_d += nown; 71484e84afc0SStefano Zampini } else { 7149c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7150c215019aSStefano Zampini 71519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71524e84afc0SStefano Zampini n_d += mm->nz; 71534e84afc0SStefano Zampini } 71544e84afc0SStefano Zampini } 7155c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71569566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71579566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71584e84afc0SStefano Zampini } 71599566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71614e84afc0SStefano Zampini } 71624e84afc0SStefano Zampini 71634e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71644e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7165d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7166d71ae5a4SJacob Faibussowitsch { 71674e84afc0SStefano Zampini Mat_Product *product = C->product; 7168ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71694e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71704e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71714e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71724e84afc0SStefano Zampini IS glob = NULL; 71734e84afc0SStefano Zampini const char *prefix; 71744e84afc0SStefano Zampini char pprefix[256]; 71754e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 717682a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 717782a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7178ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7179ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7180ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7181ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7182ddea5d60SJunchao Zhang 71834e84afc0SStefano Zampini MatProductType ptype; 7184d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71854e84afc0SStefano Zampini PetscMPIInt size; 71864e84afc0SStefano Zampini 71874e84afc0SStefano Zampini PetscFunctionBegin; 71884e84afc0SStefano Zampini MatCheckProduct(C, 1); 718928b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71904e84afc0SStefano Zampini ptype = product->type; 7191b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7192fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7193fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7194fa046f9fSJunchao Zhang } 71954e84afc0SStefano Zampini switch (ptype) { 71964e84afc0SStefano Zampini case MATPRODUCT_AB: 71974e84afc0SStefano Zampini A = product->A; 71984e84afc0SStefano Zampini P = product->B; 71994e84afc0SStefano Zampini m = A->rmap->n; 72004e84afc0SStefano Zampini n = P->cmap->n; 72014e84afc0SStefano Zampini M = A->rmap->N; 72024e84afc0SStefano Zampini N = P->cmap->N; 7203ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 72044e84afc0SStefano Zampini break; 72054e84afc0SStefano Zampini case MATPRODUCT_AtB: 72064e84afc0SStefano Zampini P = product->A; 72074e84afc0SStefano Zampini A = product->B; 72084e84afc0SStefano Zampini m = P->cmap->n; 72094e84afc0SStefano Zampini n = A->cmap->n; 72104e84afc0SStefano Zampini M = P->cmap->N; 72114e84afc0SStefano Zampini N = A->cmap->N; 72124e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 72134e84afc0SStefano Zampini break; 72144e84afc0SStefano Zampini case MATPRODUCT_PtAP: 72154e84afc0SStefano Zampini A = product->A; 72164e84afc0SStefano Zampini P = product->B; 72174e84afc0SStefano Zampini m = P->cmap->n; 72184e84afc0SStefano Zampini n = P->cmap->n; 72194e84afc0SStefano Zampini M = P->cmap->N; 72204e84afc0SStefano Zampini N = P->cmap->N; 72214e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 72224e84afc0SStefano Zampini break; 7223d71ae5a4SJacob Faibussowitsch default: 7224d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 72254e84afc0SStefano Zampini } 72269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 72274e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 72284e84afc0SStefano Zampini 72294e84afc0SStefano Zampini /* defaults */ 72304e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 72314e84afc0SStefano Zampini mp[i] = NULL; 72324e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 72334e84afc0SStefano Zampini rmapt[i] = -1; 72344e84afc0SStefano Zampini cmapt[i] = -1; 72354e84afc0SStefano Zampini rmapa[i] = NULL; 72364e84afc0SStefano Zampini cmapa[i] = NULL; 72374e84afc0SStefano Zampini } 72384e84afc0SStefano Zampini 72394e84afc0SStefano Zampini /* customization */ 72409566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 72414e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 72424e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72434e84afc0SStefano Zampini if (product->api_user) { 7244d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72459566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72469566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7247d0609cedSBarry Smith PetscOptionsEnd(); 72484e84afc0SStefano Zampini } else { 7249d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72509566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72519566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7252d0609cedSBarry Smith PetscOptionsEnd(); 7253abb89eb1SStefano Zampini } 7254abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7255abb89eb1SStefano Zampini if (product->api_user) { 7256d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72579566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7258d0609cedSBarry Smith PetscOptionsEnd(); 7259abb89eb1SStefano Zampini } else { 7260d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72619566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7262d0609cedSBarry Smith PetscOptionsEnd(); 72634e84afc0SStefano Zampini } 72644e84afc0SStefano Zampini } 72654e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72664e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72679566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72689566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72709566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72719566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7272ddea5d60SJunchao Zhang 7273ddea5d60SJunchao Zhang cp = 0; 72744e84afc0SStefano Zampini switch (ptype) { 72754e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72769566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72774e84afc0SStefano Zampini 7278ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7279ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72804e84afc0SStefano Zampini /* P is product->B */ 72819566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72829566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72839566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72849566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72859566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72869566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72879566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72884e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72899566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72909566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72919566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72924e84afc0SStefano Zampini rmapt[cp] = 1; 72934e84afc0SStefano Zampini cmapt[cp] = 2; 72944e84afc0SStefano Zampini cmapa[cp] = globidx; 72954e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72964e84afc0SStefano Zampini cp++; 7297ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72989566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72999566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73009566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73019566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73029566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73039566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73044e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73059566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73069566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73074e84afc0SStefano Zampini rmapt[cp] = 1; 73084e84afc0SStefano Zampini cmapt[cp] = 1; 73094e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73104e84afc0SStefano Zampini cp++; 73119566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 73129566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73139566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73149566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73159566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73169566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73174e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73189566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73199566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73204e84afc0SStefano Zampini rmapt[cp] = 1; 73214e84afc0SStefano Zampini cmapt[cp] = 2; 73224e84afc0SStefano Zampini cmapa[cp] = p->garray; 73234e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73244e84afc0SStefano Zampini cp++; 73254e84afc0SStefano Zampini } 7326ddea5d60SJunchao Zhang 7327ddea5d60SJunchao Zhang /* A_off * P_other */ 73284e84afc0SStefano Zampini if (mmdata->P_oth) { 73299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 73309566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7331f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73329566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73339566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73349566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73359566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73369566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73379566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73389566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73394e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73409566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73419566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73424e84afc0SStefano Zampini rmapt[cp] = 1; 73434e84afc0SStefano Zampini cmapt[cp] = 2; 73444e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73454e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73464e84afc0SStefano Zampini cp++; 73474e84afc0SStefano Zampini } 73484e84afc0SStefano Zampini break; 7349ddea5d60SJunchao Zhang 73504e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73514e84afc0SStefano Zampini /* A is product->B */ 73529566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7353ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73549566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73559566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73569566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73579566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73589566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73599566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73604e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73619566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73629566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73639566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73644e84afc0SStefano Zampini rmapt[cp] = 2; 73654e84afc0SStefano Zampini rmapa[cp] = globidx; 73664e84afc0SStefano Zampini cmapt[cp] = 2; 73674e84afc0SStefano Zampini cmapa[cp] = globidx; 73684e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73694e84afc0SStefano Zampini cp++; 73704e84afc0SStefano Zampini } else { 73719566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73729566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73739566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73749566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73759566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73769566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73774e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73789566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73799566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73809566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73814e84afc0SStefano Zampini rmapt[cp] = 1; 73824e84afc0SStefano Zampini cmapt[cp] = 2; 73834e84afc0SStefano Zampini cmapa[cp] = globidx; 73844e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73854e84afc0SStefano Zampini cp++; 73869566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73879566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73889566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73899566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73909566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73919566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73924e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73939566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73949566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73954e84afc0SStefano Zampini rmapt[cp] = 2; 73964e84afc0SStefano Zampini rmapa[cp] = p->garray; 73974e84afc0SStefano Zampini cmapt[cp] = 2; 73984e84afc0SStefano Zampini cmapa[cp] = globidx; 73994e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74004e84afc0SStefano Zampini cp++; 74014e84afc0SStefano Zampini } 74024e84afc0SStefano Zampini break; 74034e84afc0SStefano Zampini case MATPRODUCT_PtAP: 74049566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 74054e84afc0SStefano Zampini /* P is product->B */ 74069566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 74079566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 74089566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 74099566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74109566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74119566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74129566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74134e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74149566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74159566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74169566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 74174e84afc0SStefano Zampini rmapt[cp] = 2; 74184e84afc0SStefano Zampini rmapa[cp] = globidx; 74194e84afc0SStefano Zampini cmapt[cp] = 2; 74204e84afc0SStefano Zampini cmapa[cp] = globidx; 74214e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74224e84afc0SStefano Zampini cp++; 74234e84afc0SStefano Zampini if (mmdata->P_oth) { 74249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 74259566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7426f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 74279566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 74289566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 74299566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 74309566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74319566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74329566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74339566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74344e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74359566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74369566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74374e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 74384e84afc0SStefano Zampini cp++; 74399566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 74409566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74419566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74429566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74439566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74449566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74454e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74469566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74479566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74484e84afc0SStefano Zampini rmapt[cp] = 2; 74494e84afc0SStefano Zampini rmapa[cp] = globidx; 74504e84afc0SStefano Zampini cmapt[cp] = 2; 74514e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74524e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74534e84afc0SStefano Zampini cp++; 74544e84afc0SStefano Zampini } 74554e84afc0SStefano Zampini break; 7456d71ae5a4SJacob Faibussowitsch default: 7457d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74584e84afc0SStefano Zampini } 74594e84afc0SStefano Zampini /* sanity check */ 74609371c9d4SSatish Balay if (size > 1) 74619371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74624e84afc0SStefano Zampini 74639566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7464ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7465ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7466ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7467ddea5d60SJunchao Zhang } 74684e84afc0SStefano Zampini mmdata->cp = cp; 74694e84afc0SStefano Zampini C->product->data = mmdata; 74704e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74714e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74724e84afc0SStefano Zampini 7473c215019aSStefano Zampini /* memory type */ 7474c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7476d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7478c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7479d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74803214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7481c215019aSStefano Zampini 74824e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7483ddea5d60SJunchao Zhang 7484ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7485ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7486ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7487ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7488ddea5d60SJunchao Zhang */ 74894e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74904e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74914e84afc0SStefano Zampini if (mptmp[cp]) continue; 7492ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74934e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74944e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74954e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74964e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74974e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74984e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74994e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75004e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7501ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7502ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 75034e84afc0SStefano Zampini } 75044e84afc0SStefano Zampini } else ncoo_d += mm->nz; 75054e84afc0SStefano Zampini } 7506ddea5d60SJunchao Zhang 7507ddea5d60SJunchao Zhang /* 7508ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7509ddea5d60SJunchao Zhang 7510ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7511ddea5d60SJunchao Zhang 7512d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7513ddea5d60SJunchao Zhang 7514ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7515ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7516ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7517ddea5d60SJunchao Zhang 7518ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7519da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7520ddea5d60SJunchao Zhang */ 75219566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 75229566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7523ddea5d60SJunchao Zhang 7524ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7525ddea5d60SJunchao Zhang if (hasoffproc) { 75264e84afc0SStefano Zampini PetscSF msf; 75274e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 75284e84afc0SStefano Zampini 75299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 75309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 75319566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7532ddea5d60SJunchao Zhang 75334e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 75344e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75354e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 75364e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7537ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 75384e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75394e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75404e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75414e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 75424e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75434e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75444e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75454e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75464e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75474e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75484e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75494e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75504e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7551ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75524e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75534e84afc0SStefano Zampini *coi++ = gr; 75544e84afc0SStefano Zampini *idxoff++ = j; 75554e84afc0SStefano Zampini } 75564e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75574e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75584e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75594e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75604e84afc0SStefano Zampini } else { /* offdiag */ 75614e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75624e84afc0SStefano Zampini } 75634e84afc0SStefano Zampini ncoo_o += nz; 7564ddea5d60SJunchao Zhang } else { /* this is a local row */ 75654e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75664e84afc0SStefano Zampini } 75674e84afc0SStefano Zampini } 75684e84afc0SStefano Zampini } 75694e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75704e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75714e84afc0SStefano Zampini } 75724e84afc0SStefano Zampini 75739566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75746497c311SBarry Smith PetscInt incoo_o; 75756497c311SBarry Smith PetscCall(PetscIntCast(ncoo_o, &incoo_o)); 75766497c311SBarry Smith PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75779566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75789566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75794e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75809566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75819566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75829566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75839566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75849566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75859566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7586ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75879566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75884e84afc0SStefano Zampini coo_i = coo_i2; 75894e84afc0SStefano Zampini coo_j = coo_j2; 75904e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75914e84afc0SStefano Zampini ncoo = ncoo_d; 75929566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7593c215019aSStefano Zampini 75949566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75959566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75969566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75974e84afc0SStefano Zampini } 7598c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75994e84afc0SStefano Zampini 7600ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 76014e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 76024e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 76034e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 76044e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 76054e84afc0SStefano Zampini const PetscInt *jj = mm->j; 76064e84afc0SStefano Zampini const PetscInt *ii = mm->i; 76074e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 76084e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 76094e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 76104e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 76114e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 76124e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 76134e84afc0SStefano Zampini 76144e84afc0SStefano Zampini if (mptmp[cp]) continue; 7615ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7616ddea5d60SJunchao Zhang /* fill coo_i */ 76174e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76184e84afc0SStefano Zampini const PetscInt gr = i + rs; 76194e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 76204e84afc0SStefano Zampini } 7621ddea5d60SJunchao Zhang /* fill coo_j */ 7622ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7624ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7625ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7626ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76274e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 76284e84afc0SStefano Zampini } 76294e84afc0SStefano Zampini ncoo_d += mm->nz; 7630ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 76314e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76324e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 76334e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 76344e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7635ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 76364e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7637ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76384e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 76394e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 76404e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7641ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76424e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 76434e84afc0SStefano Zampini } 76444e84afc0SStefano Zampini ncoo_d += nz; 76454e84afc0SStefano Zampini } 76464e84afc0SStefano Zampini } 76474e84afc0SStefano Zampini } 76484e84afc0SStefano Zampini } 764948a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76509566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 765148a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76529566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7653ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76549566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76554e84afc0SStefano Zampini 76564e84afc0SStefano Zampini /* preallocate with COO data */ 76579566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76589566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76604e84afc0SStefano Zampini } 76614e84afc0SStefano Zampini 7662d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7663d71ae5a4SJacob Faibussowitsch { 76644e84afc0SStefano Zampini Mat_Product *product = mat->product; 76654e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76664e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7667abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76684e84afc0SStefano Zampini #else 76694e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76704e84afc0SStefano Zampini #endif 76714e84afc0SStefano Zampini 76724e84afc0SStefano Zampini PetscFunctionBegin; 76734e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76744e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 767548a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 767665e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7677abb89eb1SStefano Zampini switch (product->type) { 7678abb89eb1SStefano Zampini case MATPRODUCT_AB: 7679abb89eb1SStefano Zampini if (product->api_user) { 7680d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76819566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7682d0609cedSBarry Smith PetscOptionsEnd(); 7683abb89eb1SStefano Zampini } else { 7684d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76859566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7686d0609cedSBarry Smith PetscOptionsEnd(); 7687abb89eb1SStefano Zampini } 7688abb89eb1SStefano Zampini break; 7689abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7690abb89eb1SStefano Zampini if (product->api_user) { 7691d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76929566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7693d0609cedSBarry Smith PetscOptionsEnd(); 7694abb89eb1SStefano Zampini } else { 7695d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76969566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7697d0609cedSBarry Smith PetscOptionsEnd(); 7698abb89eb1SStefano Zampini } 7699abb89eb1SStefano Zampini break; 7700abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7701abb89eb1SStefano Zampini if (product->api_user) { 7702d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 77039566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7704d0609cedSBarry Smith PetscOptionsEnd(); 7705abb89eb1SStefano Zampini } else { 7706d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 77079566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7708d0609cedSBarry Smith PetscOptionsEnd(); 7709abb89eb1SStefano Zampini } 7710abb89eb1SStefano Zampini break; 7711d71ae5a4SJacob Faibussowitsch default: 7712d71ae5a4SJacob Faibussowitsch break; 7713abb89eb1SStefano Zampini } 7714abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7715abb89eb1SStefano Zampini } 77164e84afc0SStefano Zampini #endif 77174e84afc0SStefano Zampini if (match) { 77184e84afc0SStefano Zampini switch (product->type) { 77194e84afc0SStefano Zampini case MATPRODUCT_AB: 77204e84afc0SStefano Zampini case MATPRODUCT_AtB: 7721d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7722d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7723d71ae5a4SJacob Faibussowitsch break; 7724d71ae5a4SJacob Faibussowitsch default: 7725d71ae5a4SJacob Faibussowitsch break; 77264e84afc0SStefano Zampini } 77274e84afc0SStefano Zampini } 77284e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 77299566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 77303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 773181824310SBarry Smith } 773298921bdaSJacob Faibussowitsch 773398921bdaSJacob Faibussowitsch /* 773472833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 773572833a62Smarkadams4 773672833a62Smarkadams4 n - the number of block indices in cc[] 773772833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 773872833a62Smarkadams4 */ 7739d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7740d71ae5a4SJacob Faibussowitsch { 774172833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 774272833a62Smarkadams4 const PetscInt *idx; 774372833a62Smarkadams4 774472833a62Smarkadams4 PetscFunctionBegin; 774572833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 774672833a62Smarkadams4 if (nidx) { 774772833a62Smarkadams4 cnt = 0; 774872833a62Smarkadams4 cc[cnt] = idx[0] / bs; 774972833a62Smarkadams4 for (j = 1; j < nidx; j++) { 775072833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 775172833a62Smarkadams4 } 775272833a62Smarkadams4 } 775372833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 775472833a62Smarkadams4 *n = cnt + 1; 77553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 775672833a62Smarkadams4 } 775772833a62Smarkadams4 775872833a62Smarkadams4 /* 775972833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 776072833a62Smarkadams4 776172833a62Smarkadams4 ncollapsed - the number of block indices 776272833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 776372833a62Smarkadams4 */ 7764d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7765d71ae5a4SJacob Faibussowitsch { 776672833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 776772833a62Smarkadams4 776872833a62Smarkadams4 PetscFunctionBegin; 776972833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 777072833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 777172833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 777272833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77739371c9d4SSatish Balay cprevtmp = cprev; 77749371c9d4SSatish Balay cprev = merged; 77759371c9d4SSatish Balay merged = cprevtmp; 777672833a62Smarkadams4 } 777772833a62Smarkadams4 *ncollapsed = nprev; 777872833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 778072833a62Smarkadams4 } 778172833a62Smarkadams4 77822d776b49SBarry Smith /* 778372833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 778472833a62Smarkadams4 778572833a62Smarkadams4 Input Parameter: 778672833a62Smarkadams4 . Amat - matrix 778772833a62Smarkadams4 - symmetrize - make the result symmetric 778872833a62Smarkadams4 + scale - scale with diagonal 778972833a62Smarkadams4 779072833a62Smarkadams4 Output Parameter: 779172833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 779272833a62Smarkadams4 779372833a62Smarkadams4 */ 7794e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7795d71ae5a4SJacob Faibussowitsch { 779672833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 779772833a62Smarkadams4 MPI_Comm comm; 779872833a62Smarkadams4 Mat Gmat; 779972833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 780072833a62Smarkadams4 Mat a, b, c; 780172833a62Smarkadams4 MatType jtype; 780272833a62Smarkadams4 780372833a62Smarkadams4 PetscFunctionBegin; 780472833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 780572833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 780672833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 780772833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 780872833a62Smarkadams4 nloc = (Iend - Istart) / bs; 780972833a62Smarkadams4 781072833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 781172833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 781272833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 781372833a62Smarkadams4 781472833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 781572833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 781672833a62Smarkadams4 implementation */ 781772833a62Smarkadams4 if (bs > 1) { 781872833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 781972833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 782072833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 782172833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 782272833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 782372833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 782472833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 78252cf69117Smarkadams4 MatScalar *aa, val, *AA; 78262cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 78276497c311SBarry Smith 78289371c9d4SSatish Balay if (isseqaij) { 78299371c9d4SSatish Balay a = Amat; 78309371c9d4SSatish Balay b = NULL; 78319371c9d4SSatish Balay } else { 783272833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 78339371c9d4SSatish Balay a = d->A; 78349371c9d4SSatish Balay b = d->B; 783572833a62Smarkadams4 } 783672833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 783732603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 783872833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 78392cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 784059ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 78416497c311SBarry Smith 784259ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 784359ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 784459ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 784559ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 784672833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 784759ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 784859ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 784959ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 785059ee9f9fSPierre Jolivet else { 785159ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 785259ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 785359ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 785472833a62Smarkadams4 } 785559ee9f9fSPierre Jolivet } 785659ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 785759ee9f9fSPierre Jolivet } 785859ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 785972833a62Smarkadams4 if (!ok) { 786072833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 786159ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 786272833a62Smarkadams4 goto old_bs; 786372833a62Smarkadams4 } 786472833a62Smarkadams4 } 786572833a62Smarkadams4 } 786672833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 786772833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 786872833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78692cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 787072833a62Smarkadams4 // diag 787172833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 787272833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 78736497c311SBarry Smith 787472833a62Smarkadams4 ai = aseq->i; 787572833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 787672833a62Smarkadams4 aj = aseq->j + ai[brow]; 78776497c311SBarry Smith for (PetscInt k = 0; k < n; k += bs) { // block columns 787872833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 787972833a62Smarkadams4 val = 0; 7880e02fb3cdSMark Adams if (index_size == 0) { 78816497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 788272833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 78836497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // columns in block 788472833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 788572833a62Smarkadams4 } 788672833a62Smarkadams4 } 7887e02fb3cdSMark Adams } else { // use (index,index) value if provided 78886497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78896497c311SBarry Smith PetscInt ii = index[iii]; 7890e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 78916497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block 78926497c311SBarry Smith PetscInt jj = index[jjj]; 7893cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7894e02fb3cdSMark Adams } 7895e02fb3cdSMark Adams } 7896e02fb3cdSMark Adams } 7897835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 789872833a62Smarkadams4 AA[k / bs] = val; 789972833a62Smarkadams4 } 790072833a62Smarkadams4 grow = Istart / bs + brow / bs; 790166521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 790272833a62Smarkadams4 } 790372833a62Smarkadams4 // off-diag 790472833a62Smarkadams4 if (ismpiaij) { 790572833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 790672833a62Smarkadams4 const PetscScalar *vals; 790772833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 79086497c311SBarry Smith 790972833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 791072833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 791172833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 79126497c311SBarry Smith for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 791359ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 791472833a62Smarkadams4 AA[k / bs] = 0; 791572833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 791672833a62Smarkadams4 } 791772833a62Smarkadams4 nc = ncols / bs; 791872833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7919e02fb3cdSMark Adams if (index_size == 0) { 79206497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 792172833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79226497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79236497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // cols in block 7924835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 792572833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 792672833a62Smarkadams4 } 792772833a62Smarkadams4 } 792872833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 792972833a62Smarkadams4 } 7930e02fb3cdSMark Adams } else { // use (index,index) value if provided 79316497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 79326497c311SBarry Smith PetscInt ii = index[iii]; 7933e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79346497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79356497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block 79366497c311SBarry Smith PetscInt jj = index[jjj]; 7937e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7938e02fb3cdSMark Adams } 7939e02fb3cdSMark Adams } 7940e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7941e02fb3cdSMark Adams } 7942e02fb3cdSMark Adams } 794372833a62Smarkadams4 grow = Istart / bs + brow / bs; 794466521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 794572833a62Smarkadams4 } 794672833a62Smarkadams4 } 794772833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 794872833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79492cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 795072833a62Smarkadams4 } else { 795172833a62Smarkadams4 const PetscScalar *vals; 795272833a62Smarkadams4 const PetscInt *idx; 795372833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 795472833a62Smarkadams4 old_bs: 795572833a62Smarkadams4 /* 795672833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 795772833a62Smarkadams4 */ 795872833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 795932603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 796072833a62Smarkadams4 if (isseqaij) { 796172833a62Smarkadams4 PetscInt max_d_nnz; 79626497c311SBarry Smith 796372833a62Smarkadams4 /* 796472833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 796572833a62Smarkadams4 */ 796672833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 796772833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 796872833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 796948a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 797072833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 797172833a62Smarkadams4 } else if (ismpiaij) { 797272833a62Smarkadams4 Mat Daij, Oaij; 797372833a62Smarkadams4 const PetscInt *garray; 797472833a62Smarkadams4 PetscInt max_d_nnz; 79756497c311SBarry Smith 797672833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 797772833a62Smarkadams4 /* 797872833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 797972833a62Smarkadams4 */ 798072833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 798172833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 798272833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 798348a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 798472833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 798572833a62Smarkadams4 /* 798672833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 798772833a62Smarkadams4 */ 798872833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 798972833a62Smarkadams4 o_nnz[jj] = 0; 799072833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 799172833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 799272833a62Smarkadams4 o_nnz[jj] += ncols; 799372833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 799472833a62Smarkadams4 } 799572833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 799672833a62Smarkadams4 } 799772833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 799872833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 799972833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 800072833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 800172833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 800272833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 800372833a62Smarkadams4 PetscInt dest_row = Ii / bs; 80046497c311SBarry Smith 800572833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 800672833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 800772833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 800872833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 80096497c311SBarry Smith 801072833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 801172833a62Smarkadams4 } 801272833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 801372833a62Smarkadams4 } 801472833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 801572833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 801672833a62Smarkadams4 } 801772833a62Smarkadams4 } else { 80182d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 80192d776b49SBarry Smith else { 80202d776b49SBarry Smith Gmat = Amat; 80212d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 80222d776b49SBarry Smith } 80239371c9d4SSatish Balay if (isseqaij) { 80249371c9d4SSatish Balay a = Gmat; 80259371c9d4SSatish Balay b = NULL; 80269371c9d4SSatish Balay } else { 802772833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 80289371c9d4SSatish Balay a = d->A; 80299371c9d4SSatish Balay b = d->B; 803072833a62Smarkadams4 } 80312d776b49SBarry Smith if (filter >= 0 || scale) { 80322d776b49SBarry Smith /* take absolute value of each entry */ 803372833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 803472833a62Smarkadams4 MatInfo info; 803572833a62Smarkadams4 PetscScalar *avals; 80366497c311SBarry Smith 803772833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 803872833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 803972833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 804072833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 804172833a62Smarkadams4 } 804272833a62Smarkadams4 } 80432d776b49SBarry Smith } 804472833a62Smarkadams4 if (symmetrize) { 8045b94d7dedSBarry Smith PetscBool isset, issym; 80466497c311SBarry Smith 8047b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8048b94d7dedSBarry Smith if (!isset || !issym) { 804972833a62Smarkadams4 Mat matTrans; 80506497c311SBarry Smith 805172833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80521fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 805372833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 805472833a62Smarkadams4 } 805572833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80562d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 805772833a62Smarkadams4 if (scale) { 805872833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 805972833a62Smarkadams4 Vec diag; 80606497c311SBarry Smith 806172833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 806272833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 806372833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 806472833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 806572833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 806672833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 806772833a62Smarkadams4 } 806872833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80692d776b49SBarry Smith if (filter >= 0) { 80702ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80712ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80722d776b49SBarry Smith } 807372833a62Smarkadams4 *a_Gmat = Gmat; 80743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 807572833a62Smarkadams4 } 807672833a62Smarkadams4 807772833a62Smarkadams4 /* 807898921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 807998921bdaSJacob Faibussowitsch */ 808098921bdaSJacob Faibussowitsch 808198921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80829566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80839566063dSJacob Faibussowitsch #undef PetscCall 80849371c9d4SSatish Balay #define PetscCall(...) \ 80859371c9d4SSatish Balay do { \ 80865f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 808798921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 808898921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 808998921bdaSJacob Faibussowitsch return; \ 809098921bdaSJacob Faibussowitsch } \ 809198921bdaSJacob Faibussowitsch } while (0) 809298921bdaSJacob Faibussowitsch 809398921bdaSJacob Faibussowitsch #undef SETERRQ 80949371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80959371c9d4SSatish Balay do { \ 809698921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 809798921bdaSJacob Faibussowitsch return; \ 809898921bdaSJacob Faibussowitsch } while (0) 809998921bdaSJacob Faibussowitsch 810098921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 810198921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 810298921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 810398921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 810498921bdaSJacob Faibussowitsch #else 810598921bdaSJacob Faibussowitsch #endif 8106d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8107d71ae5a4SJacob Faibussowitsch { 810898921bdaSJacob Faibussowitsch Mat mat = *mmat; 810998921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 811098921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 811198921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 811298921bdaSJacob Faibussowitsch PetscScalar value; 811398921bdaSJacob Faibussowitsch 811498921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 811598921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 81165f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 811798921bdaSJacob Faibussowitsch { 811898921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 811998921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 812098921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 812198921bdaSJacob Faibussowitsch 812298921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 812398921bdaSJacob Faibussowitsch Mat A = aij->A; 812498921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 812598921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 812698921bdaSJacob Faibussowitsch MatScalar *aa; 8127f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 812898921bdaSJacob Faibussowitsch Mat B = aij->B; 812998921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 813098921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 813198921bdaSJacob Faibussowitsch MatScalar *ba; 813298921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 813398921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 813498921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 813598921bdaSJacob Faibussowitsch 813698921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 813798921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 813898921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 813998921bdaSJacob Faibussowitsch 814098921bdaSJacob Faibussowitsch PetscFunctionBegin; 81419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 814398921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 814498921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81456bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 814698921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 814798921bdaSJacob Faibussowitsch row = im[i] - rstart; 814898921bdaSJacob Faibussowitsch lastcol1 = -1; 814998921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 815098921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 815198921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 815298921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 815398921bdaSJacob Faibussowitsch low1 = 0; 815498921bdaSJacob Faibussowitsch high1 = nrow1; 815598921bdaSJacob Faibussowitsch lastcol2 = -1; 815698921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 815798921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 815898921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 815998921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 816098921bdaSJacob Faibussowitsch low2 = 0; 816198921bdaSJacob Faibussowitsch high2 = nrow2; 816298921bdaSJacob Faibussowitsch 816398921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 816498921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 816598921bdaSJacob Faibussowitsch else value = v[i + j * m]; 816698921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 816798921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 816898921bdaSJacob Faibussowitsch col = in[j] - cstart; 816998921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 817098921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 817198921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 817263a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 817398921bdaSJacob Faibussowitsch } else { 817498921bdaSJacob Faibussowitsch if (mat->was_assembled) { 817548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 817698921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8177eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 817898921bdaSJacob Faibussowitsch col--; 817998921bdaSJacob Faibussowitsch #else 818098921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 818198921bdaSJacob Faibussowitsch #endif 8182f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 8183eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 818498921bdaSJacob Faibussowitsch col = in[j]; 818598921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 818698921bdaSJacob Faibussowitsch B = aij->B; 818798921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81889371c9d4SSatish Balay bimax = b->imax; 81899371c9d4SSatish Balay bi = b->i; 81909371c9d4SSatish Balay bilen = b->ilen; 81919371c9d4SSatish Balay bj = b->j; 819298921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 819398921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 819498921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 819598921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 819698921bdaSJacob Faibussowitsch low2 = 0; 819798921bdaSJacob Faibussowitsch high2 = nrow2; 819898921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 819998921bdaSJacob Faibussowitsch ba = b->a; 820098921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 820198921bdaSJacob Faibussowitsch } 820298921bdaSJacob Faibussowitsch } else col = in[j]; 820398921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 820498921bdaSJacob Faibussowitsch } 820598921bdaSJacob Faibussowitsch } 820698921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 820798921bdaSJacob Faibussowitsch if (roworiented) { 82089566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 820998921bdaSJacob Faibussowitsch } else { 82109566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 821198921bdaSJacob Faibussowitsch } 821298921bdaSJacob Faibussowitsch } 821398921bdaSJacob Faibussowitsch } 82149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 82159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 821698921bdaSJacob Faibussowitsch } 821798921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 821898921bdaSJacob Faibussowitsch } 821972833a62Smarkadams4 822098921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 822198921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 822298921bdaSJacob Faibussowitsch * original definitions */ 82239566063dSJacob Faibussowitsch #undef PetscCall 822498921bdaSJacob Faibussowitsch #undef SETERRQ 8225