xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision e91c04dfc8a52dee1965211bb1cc8e5bf775178f)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */
10674b392bSAlexander #define TYPE AIJ
11674b392bSAlexander #define TYPE_AIJ
12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h"
13674b392bSAlexander #undef TYPE
14674b392bSAlexander #undef TYPE_AIJ
15674b392bSAlexander 
16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat)
1726cec326SBarry Smith {
1826cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1926cec326SBarry Smith 
2026cec326SBarry Smith   PetscFunctionBegin;
2126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
2226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
2326cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
2426cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
2526cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2826cec326SBarry Smith #else
2926cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
3026cec326SBarry Smith #endif
3126cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
3226cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
3326cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
3426cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
3526cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
36674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
37674b392bSAlexander }
38674b392bSAlexander 
39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat)
40674b392bSAlexander {
41674b392bSAlexander   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
42674b392bSAlexander   /* Save the nonzero states of the component matrices because those are what are used to determine
43674b392bSAlexander     the nonzero state of mat */
44674b392bSAlexander   PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate;
45674b392bSAlexander 
46674b392bSAlexander   PetscFunctionBegin;
47674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
48674b392bSAlexander   PetscCall(MatSetUp_MPI_Hash(mat));
49674b392bSAlexander   aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate;
50674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
51674b392bSAlexander }
52674b392bSAlexander 
53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
54674b392bSAlexander {
55674b392bSAlexander   PetscFunctionBegin;
56674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
5726cec326SBarry Smith 
5826cec326SBarry Smith   PetscCall(PetscFree(mat->data));
5926cec326SBarry Smith 
6026cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
6126cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
6226cec326SBarry Smith 
6326cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
6426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
69674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
7126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
7326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
7626cec326SBarry Smith #endif
7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
7926cec326SBarry Smith #endif
8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
8126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
8226cec326SBarry Smith #endif
8326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
8526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
8626cec326SBarry Smith #endif
8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
8826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
8926cec326SBarry Smith #endif
9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
9126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
9226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
9326cec326SBarry Smith #endif
9426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
9526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
9626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
9726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
9826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
9926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
10126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
10226cec326SBarry Smith #endif
10326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
10426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
10526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
10626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
10726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
10826cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
10926cec326SBarry Smith }
11026cec326SBarry Smith 
111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
112d71ae5a4SJacob Faibussowitsch {
1138a9c020eSBarry Smith   Mat B;
1148a9c020eSBarry Smith 
1158a9c020eSBarry Smith   PetscFunctionBegin;
1168a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
1178a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
1188a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
119501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
1203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1218a9c020eSBarry Smith }
1228a9c020eSBarry Smith 
123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
124d71ae5a4SJacob Faibussowitsch {
1258a9c020eSBarry Smith   Mat B;
1268a9c020eSBarry Smith 
1278a9c020eSBarry Smith   PetscFunctionBegin;
1288a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1298a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
130501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1328a9c020eSBarry Smith }
1338a9c020eSBarry Smith 
13401bebe75SBarry Smith /*MC
13501bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
13601bebe75SBarry Smith 
13711a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
13811a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
13911a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
14001bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14101bebe75SBarry Smith   the above preallocation routines for simplicity.
14201bebe75SBarry Smith 
14327430b45SBarry Smith    Options Database Key:
14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
14501bebe75SBarry Smith 
14611a5261eSBarry Smith   Developer Note:
1472ef1f0ffSBarry Smith   Level: beginner
1482ef1f0ffSBarry Smith 
14911a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
15001bebe75SBarry Smith    enough exist.
15101bebe75SBarry Smith 
1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
15301bebe75SBarry Smith M*/
15401bebe75SBarry Smith 
15501bebe75SBarry Smith /*MC
15601bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
15701bebe75SBarry Smith 
15811a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
15911a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
16011a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
16101bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
16201bebe75SBarry Smith   the above preallocation routines for simplicity.
16301bebe75SBarry Smith 
16427430b45SBarry Smith    Options Database Key:
16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
16601bebe75SBarry Smith 
16701bebe75SBarry Smith   Level: beginner
16801bebe75SBarry Smith 
1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
17001bebe75SBarry Smith M*/
17101bebe75SBarry Smith 
172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
173d71ae5a4SJacob Faibussowitsch {
174f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
175f74ef234SStefano Zampini 
176f74ef234SStefano Zampini   PetscFunctionBegin;
177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
178b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
179f74ef234SStefano Zampini #endif
1801baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1811baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1823120d049SRichard Tran Mills 
1833120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1843120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1853120d049SRichard Tran Mills    * to differ from the parent matrix. */
1861baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1871baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189f74ef234SStefano Zampini }
190f74ef234SStefano Zampini 
191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
192d71ae5a4SJacob Faibussowitsch {
19326bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
19426bda2c4Sstefano_zampini 
19526bda2c4Sstefano_zampini   PetscFunctionBegin;
19646533700Sstefano_zampini   if (mat->A) {
1979566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1989566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
19946533700Sstefano_zampini   }
2003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20126bda2c4Sstefano_zampini }
20226bda2c4Sstefano_zampini 
203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
204d71ae5a4SJacob Faibussowitsch {
20527d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
20627d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
20727d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
20827d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
209ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
21027d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
21127d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
21227d4218bSShri Abhyankar 
21327d4218bSShri Abhyankar   PetscFunctionBegin;
214f4259b30SLisandro Dalcin   *keptrows = NULL;
215ce496241SStefano Zampini 
21627d4218bSShri Abhyankar   ia = a->i;
21727d4218bSShri Abhyankar   ib = b->i;
2189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
22027d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22127d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22227d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22327d4218bSShri Abhyankar     if (!na && !nb) {
22427d4218bSShri Abhyankar       cnt++;
22527d4218bSShri Abhyankar       goto ok1;
22627d4218bSShri Abhyankar     }
227ce496241SStefano Zampini     aa = aav + ia[i];
22827d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
22927d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
23027d4218bSShri Abhyankar     }
2318e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23227d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23327d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
23427d4218bSShri Abhyankar     }
23527d4218bSShri Abhyankar     cnt++;
23627d4218bSShri Abhyankar   ok1:;
23727d4218bSShri Abhyankar   }
238462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
239ce496241SStefano Zampini   if (!n0rows) {
2409566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2419566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
243ce496241SStefano Zampini   }
2449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
24527d4218bSShri Abhyankar   cnt = 0;
24627d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
24727d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
24827d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
24927d4218bSShri Abhyankar     if (!na && !nb) continue;
250ce496241SStefano Zampini     aa = aav + ia[i];
25127d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
25227d4218bSShri Abhyankar       if (aa[j] != 0.0) {
25327d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
25427d4218bSShri Abhyankar         goto ok2;
25527d4218bSShri Abhyankar       }
25627d4218bSShri Abhyankar     }
2578e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
25827d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
25927d4218bSShri Abhyankar       if (bb[j] != 0.0) {
26027d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
26127d4218bSShri Abhyankar         goto ok2;
26227d4218bSShri Abhyankar       }
26327d4218bSShri Abhyankar     }
26427d4218bSShri Abhyankar   ok2:;
26527d4218bSShri Abhyankar   }
2669566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27027d4218bSShri Abhyankar }
27127d4218bSShri Abhyankar 
272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
273d71ae5a4SJacob Faibussowitsch {
27499e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
27594342113SStefano Zampini   PetscBool   cong;
27699e65526SBarry Smith 
27799e65526SBarry Smith   PetscFunctionBegin;
2789566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
27994342113SStefano Zampini   if (Y->assembled && cong) {
2809566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
28199e65526SBarry Smith   } else {
2829566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
28399e65526SBarry Smith   }
2843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28599e65526SBarry Smith }
28699e65526SBarry Smith 
287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
288d71ae5a4SJacob Faibussowitsch {
289f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
290f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
291f1f41ecbSJed Brown 
292f1f41ecbSJed Brown   PetscFunctionBegin;
2930298fd71SBarry Smith   *zrows = NULL;
2949566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2959566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
296f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2979566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
299f1f41ecbSJed Brown }
300f1f41ecbSJed Brown 
301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
302d71ae5a4SJacob Faibussowitsch {
3030716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
304a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
3050716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
3060716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
3070716a85fSBarry Smith   PetscReal         *work;
308ce496241SStefano Zampini   const PetscScalar *dummy;
3090716a85fSBarry Smith 
3100716a85fSBarry Smith   PetscFunctionBegin;
3119566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
3129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
3139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
3149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
3159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
3169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
317857cbf51SRichard Tran Mills   if (type == NORM_2) {
318ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
319ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
320857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
321ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
322ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
323857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
324ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
325ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
326857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
327ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
328ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
329857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
330ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
331ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
332857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
333857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
334*e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3350716a85fSBarry Smith   } else {
336*e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3370716a85fSBarry Smith   }
3389566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
339857cbf51SRichard Tran Mills   if (type == NORM_2) {
340a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
341857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
342a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3430716a85fSBarry Smith   }
3443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3450716a85fSBarry Smith }
3460716a85fSBarry Smith 
347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
348d71ae5a4SJacob Faibussowitsch {
349e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
350e52d2c62SBarry Smith   IS              sis, gis;
351e52d2c62SBarry Smith   const PetscInt *isis, *igis;
352e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
353e52d2c62SBarry Smith 
354e52d2c62SBarry Smith   PetscFunctionBegin;
3559566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3569566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3579566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3589566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3599566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3609566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
361e52d2c62SBarry Smith 
3629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3639566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3649566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
365e52d2c62SBarry Smith   n = ngis + nsis;
3669566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3679566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
368e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3699566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
370e52d2c62SBarry Smith 
3719566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3729566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3739566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3749566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
376e52d2c62SBarry Smith }
377e52d2c62SBarry Smith 
378dd6ea824SBarry Smith /*
3790f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3810f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
38372fa4726SStefano Zampini has an order N integer array but is fast to access.
3849e25ed09SBarry Smith */
385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
386d71ae5a4SJacob Faibussowitsch {
38744a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
388d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
389dbb450caSBarry Smith 
3903a40ed3dSBarry Smith   PetscFunctionBegin;
39108401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
393eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
394c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
395b1fc9764SSatish Balay #else
3969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
397905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
398b1fc9764SSatish Balay #endif
3993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4009e25ed09SBarry Smith }
4019e25ed09SBarry Smith 
402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
403a8f51744SPierre Jolivet   do { \
404db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
405db4deed7SKarl Rupp     else high1 = nrow1; \
406fd3458f5SBarry Smith     lastcol1 = col; \
407fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
408fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
409fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
410fd3458f5SBarry Smith       else low1 = t; \
411ba4e3ef2SSatish Balay     } \
412fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
413fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
414fd3458f5SBarry Smith       if (rp1[_i] == col) { \
4150c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4160c0d7e18SFande Kong           ap1[_i] += value; \
4170c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
4180c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4199371c9d4SSatish Balay         } else ap1[_i] = value; \
42030770e4dSSatish Balay         goto a_noinsert; \
4210520107fSSatish Balay       } \
4220520107fSSatish Balay     } \
4239371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4249371c9d4SSatish Balay       low1  = 0; \
4259371c9d4SSatish Balay       high1 = nrow1; \
4269371c9d4SSatish Balay       goto a_noinsert; \
4279371c9d4SSatish Balay     } \
4289371c9d4SSatish Balay     if (nonew == 1) { \
4299371c9d4SSatish Balay       low1  = 0; \
4309371c9d4SSatish Balay       high1 = nrow1; \
4319371c9d4SSatish Balay       goto a_noinsert; \
4329371c9d4SSatish Balay     } \
43308401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
434fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4359371c9d4SSatish Balay     N = nrow1++ - 1; \
4369371c9d4SSatish Balay     a->nz++; \
4379371c9d4SSatish Balay     high1++; \
4380520107fSSatish Balay     /* shift up all the later entries in this row */ \
4399566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4409566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
441fd3458f5SBarry Smith     rp1[_i] = col; \
442fd3458f5SBarry Smith     ap1[_i] = value; \
44330770e4dSSatish Balay   a_noinsert:; \
444fd3458f5SBarry Smith     ailen[row] = nrow1; \
445a8f51744SPierre Jolivet   } while (0)
4460a198c4cSBarry Smith 
447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
448a8f51744SPierre Jolivet   do { \
449db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
450db4deed7SKarl Rupp     else high2 = nrow2; \
451fd3458f5SBarry Smith     lastcol2 = col; \
452fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
453fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
454fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
455fd3458f5SBarry Smith       else low2 = t; \
456ba4e3ef2SSatish Balay     } \
457fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
458fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
459fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4600c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4610c0d7e18SFande Kong           ap2[_i] += value; \
4620c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4639371c9d4SSatish Balay         } else ap2[_i] = value; \
46430770e4dSSatish Balay         goto b_noinsert; \
46530770e4dSSatish Balay       } \
46630770e4dSSatish Balay     } \
4679371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4689371c9d4SSatish Balay       low2  = 0; \
4699371c9d4SSatish Balay       high2 = nrow2; \
4709371c9d4SSatish Balay       goto b_noinsert; \
4719371c9d4SSatish Balay     } \
4729371c9d4SSatish Balay     if (nonew == 1) { \
4739371c9d4SSatish Balay       low2  = 0; \
4749371c9d4SSatish Balay       high2 = nrow2; \
4759371c9d4SSatish Balay       goto b_noinsert; \
4769371c9d4SSatish Balay     } \
47708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
478fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4799371c9d4SSatish Balay     N = nrow2++ - 1; \
4809371c9d4SSatish Balay     b->nz++; \
4819371c9d4SSatish Balay     high2++; \
48230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4839566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4849566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
485fd3458f5SBarry Smith     rp2[_i] = col; \
486fd3458f5SBarry Smith     ap2[_i] = value; \
48730770e4dSSatish Balay   b_noinsert:; \
488fd3458f5SBarry Smith     bilen[row] = nrow2; \
489a8f51744SPierre Jolivet   } while (0)
49030770e4dSSatish Balay 
491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
492d71ae5a4SJacob Faibussowitsch {
4932fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4942fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4952fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
496fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4972fd7e33dSBarry Smith 
4982fd7e33dSBarry Smith   PetscFunctionBegin;
4992fd7e33dSBarry Smith   /* code only works for square matrices A */
5002fd7e33dSBarry Smith 
5012fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
5029566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
5032fd7e33dSBarry Smith   row = row - diag;
5042fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
5052fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
5062fd7e33dSBarry Smith   }
507fff043a9SJunchao Zhang   if (l) {
5089566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5099566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
5109566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
511fff043a9SJunchao Zhang   }
5122fd7e33dSBarry Smith 
5132fd7e33dSBarry Smith   /* diagonal part */
514fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
5159566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
51657508eceSPierre Jolivet     PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row]));
5179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
518fff043a9SJunchao Zhang   }
5192fd7e33dSBarry Smith 
5202fd7e33dSBarry Smith   /* right of diagonal part */
521fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5229566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5239566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
525fff043a9SJunchao Zhang   }
5263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5272fd7e33dSBarry Smith }
5282fd7e33dSBarry Smith 
529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
530d71ae5a4SJacob Faibussowitsch {
53144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
532071fcb05SBarry Smith   PetscScalar value = 0.0;
533d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
534d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
535ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5368a729477SBarry Smith 
5370520107fSSatish Balay   /* Some Variables required in the macro */
5384ee7247eSSatish Balay   Mat         A     = aij->A;
5394ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
54057809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
541ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
54230770e4dSSatish Balay   Mat         B                 = aij->B;
54330770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
544d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
545ce496241SStefano Zampini   MatScalar  *aa, *ba;
546fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5478d76821aSHong Zhang   PetscInt    nonew;
548a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5494ee7247eSSatish Balay 
5503a40ed3dSBarry Smith   PetscFunctionBegin;
5519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5538a729477SBarry Smith   for (i = 0; i < m; i++) {
5545ef9f2a5SBarry Smith     if (im[i] < 0) continue;
55508401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5564b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5574b0e389bSBarry Smith       row      = im[i] - rstart;
558fd3458f5SBarry Smith       lastcol1 = -1;
5598e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5608e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
561fd3458f5SBarry Smith       rmax1    = aimax[row];
562fd3458f5SBarry Smith       nrow1    = ailen[row];
563fd3458f5SBarry Smith       low1     = 0;
564fd3458f5SBarry Smith       high1    = nrow1;
565fd3458f5SBarry Smith       lastcol2 = -1;
5668e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5678e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
568fd3458f5SBarry Smith       rmax2    = bimax[row];
569d498b1e9SBarry Smith       nrow2    = bilen[row];
570fd3458f5SBarry Smith       low2     = 0;
571fd3458f5SBarry Smith       high2    = nrow2;
572fd3458f5SBarry Smith 
5731eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
574071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
575c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
576fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
577fd3458f5SBarry Smith           col   = in[j] - cstart;
5788d76821aSHong Zhang           nonew = a->nonew;
579d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
580f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
581f7d195e4SLawrence Mitchell           continue;
582f7d195e4SLawrence Mitchell         } else {
583f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
584227d817aSBarry Smith           if (mat->was_assembled) {
58548a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
587eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
588fa46199cSSatish Balay             col--;
589b1fc9764SSatish Balay #else
590905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
591b1fc9764SSatish Balay #endif
592f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
593eb14dd14SAlex Lindsay               PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));  /* Change aij->B from reduced/local format to expanded/global format */
5944b0e389bSBarry Smith               col = in[j];
5959bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
596f9508a3cSSatish Balay               B     = aij->B;
597f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5989371c9d4SSatish Balay               bimax = b->imax;
5999371c9d4SSatish Balay               bi    = b->i;
6009371c9d4SSatish Balay               bilen = b->ilen;
6019371c9d4SSatish Balay               bj    = b->j;
6029371c9d4SSatish Balay               ba    = b->a;
603cff58d65SJunchao Zhang               rp2   = PetscSafePointerPlusOffset(bj, bi[row]);
604cff58d65SJunchao Zhang               ap2   = PetscSafePointerPlusOffset(ba, bi[row]);
605d498b1e9SBarry Smith               rmax2 = bimax[row];
606d498b1e9SBarry Smith               nrow2 = bilen[row];
607d498b1e9SBarry Smith               low2  = 0;
608d498b1e9SBarry Smith               high2 = nrow2;
609d0f46423SBarry Smith               bm    = aij->B->rmap->n;
610f9508a3cSSatish Balay               ba    = b->a;
611d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
612f4f49eeaSPierre Jolivet               if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) {
6139566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
61498921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
6150587a0fcSBarry Smith             }
616c48de900SBarry Smith           } else col = in[j];
6178d76821aSHong Zhang           nonew = b->nonew;
618d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
6191eb62cbbSBarry Smith         }
6201eb62cbbSBarry Smith       }
6215ef9f2a5SBarry Smith     } else {
62228b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
62390f02eecSBarry Smith       if (!aij->donotstash) {
6245080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
625d36fbae8SSatish Balay         if (roworiented) {
6268e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
627d36fbae8SSatish Balay         } else {
6288e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6294b0e389bSBarry Smith         }
6301eb62cbbSBarry Smith       }
6318a729477SBarry Smith     }
63290f02eecSBarry Smith   }
6335519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6368a729477SBarry Smith }
6378a729477SBarry Smith 
6382b08fdbeSandi selinger /*
639904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6402b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
641904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6422b08fdbeSandi selinger */
643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
644d71ae5a4SJacob Faibussowitsch {
645904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
646904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6474cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
648904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
649904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
650904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
651904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
652904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6536dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
654904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
655904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
656904d1e70Sandi selinger 
657904d1e70Sandi selinger   PetscFunctionBegin;
658904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
659904d1e70Sandi selinger   for (j = 0; j < am; j++) {
660904d1e70Sandi selinger     dnz = onz = 0;
661904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6626dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
663904d1e70Sandi selinger       /* If column is in the diagonal */
664904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
665904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
666904d1e70Sandi selinger         dnz++;
667904d1e70Sandi selinger       } else { /* off-diagonal entries */
668904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
669904d1e70Sandi selinger         onz++;
670904d1e70Sandi selinger       }
671904d1e70Sandi selinger     }
672904d1e70Sandi selinger     ailen[j] = dnz;
673904d1e70Sandi selinger     bilen[j] = onz;
674904d1e70Sandi selinger   }
6753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
676904d1e70Sandi selinger }
677904d1e70Sandi selinger 
678904d1e70Sandi selinger /*
679904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
680904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6811de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6821de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6831de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
684904d1e70Sandi selinger */
685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
686d71ae5a4SJacob Faibussowitsch {
6873a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6883a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6894cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
690f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6913a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6923a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6933a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6943a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6953a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6966dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6971de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
698904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
699904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
7003a063d27Sandi selinger 
7013a063d27Sandi selinger   PetscFunctionBegin;
7023a063d27Sandi selinger   /* Iterate over all rows of the matrix */
7033a063d27Sandi selinger   for (j = 0; j < am; j++) {
704904d1e70Sandi selinger     dnz_row = onz_row = 0;
705904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
706904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
707e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
708e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
709ae8e66a0Sandi selinger       /* If column is in the diagonal */
7103a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
711904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
712904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
713904d1e70Sandi selinger         dnz_row++;
714ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
715904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
716904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
717904d1e70Sandi selinger         onz_row++;
7183a063d27Sandi selinger       }
7193a063d27Sandi selinger     }
720904d1e70Sandi selinger     ailen[j] = dnz_row;
721904d1e70Sandi selinger     bilen[j] = onz_row;
7223a063d27Sandi selinger   }
7233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7243a063d27Sandi selinger }
7253a063d27Sandi selinger 
726ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
727d71ae5a4SJacob Faibussowitsch {
728b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
729d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
730d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
731b49de8d1SLois Curfman McInnes 
7323a40ed3dSBarry Smith   PetscFunctionBegin;
733b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
73454c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
73554c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
73685835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
737b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
738b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
73954c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
74054c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
741b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
742b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7439566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
744fa852ad4SSatish Balay       } else {
74548a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
746aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
747eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
748fa46199cSSatish Balay         col--;
749b1fc9764SSatish Balay #else
750905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
751b1fc9764SSatish Balay #endif
752e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
75348a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
754b49de8d1SLois Curfman McInnes       }
755b49de8d1SLois Curfman McInnes     }
756b49de8d1SLois Curfman McInnes   }
7573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
758b49de8d1SLois Curfman McInnes }
759bc5ccf88SSatish Balay 
760ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
761d71ae5a4SJacob Faibussowitsch {
762bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
763b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
764bc5ccf88SSatish Balay 
765bc5ccf88SSatish Balay   PetscFunctionBegin;
7663ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
767bc5ccf88SSatish Balay 
7689566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7699566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7709566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
772bc5ccf88SSatish Balay }
773bc5ccf88SSatish Balay 
774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
775d71ae5a4SJacob Faibussowitsch {
776bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
777b1d57f15SBarry Smith   PetscMPIInt  n;
778b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
779e44c0bd4SBarry Smith   PetscInt    *row, *col;
780ace3abfcSBarry Smith   PetscBool    other_disassembled;
78187828ca2SBarry Smith   PetscScalar *val;
782bc5ccf88SSatish Balay 
78391c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7846e111a19SKarl Rupp 
785bc5ccf88SSatish Balay   PetscFunctionBegin;
7864cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
787a2d1c673SSatish Balay     while (1) {
7889566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
789a2d1c673SSatish Balay       if (!flg) break;
790a2d1c673SSatish Balay 
791bc5ccf88SSatish Balay       for (i = 0; i < n;) {
792bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7932205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7942205254eSKarl Rupp           if (row[j] != rstart) break;
7952205254eSKarl Rupp         }
796bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
797bc5ccf88SSatish Balay         else ncols = n - i;
798bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7999566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
800bc5ccf88SSatish Balay         i = j;
801bc5ccf88SSatish Balay       }
802bc5ccf88SSatish Balay     }
8039566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
804bc5ccf88SSatish Balay   }
8058c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
806c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
8079ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
8089ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
8099566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
8109566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
8119ecce9b1SRichard Tran Mills   }
812e2cf4d64SStefano Zampini #endif
8139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
8149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
815bc5ccf88SSatish Balay 
816bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
817071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
818bc5ccf88SSatish Balay   /*
819bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
820bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
821bc5ccf88SSatish Balay   */
822bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
823462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
82435cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
825eb14dd14SAlex Lindsay       PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
826ad59fb31SSatish Balay     }
827ad59fb31SSatish Balay   }
82848a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8299566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8308c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
831c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
832e2cf4d64SStefano Zampini #endif
8339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
835bc5ccf88SSatish Balay 
8369566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8372205254eSKarl Rupp 
838f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
839a30b2313SHong Zhang 
8409566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
841e56f5c9eSBarry Smith 
8424f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
843f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
844e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
845462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
846e56f5c9eSBarry Smith   }
8478c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
848c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
849e2cf4d64SStefano Zampini #endif
8503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
851bc5ccf88SSatish Balay }
852bc5ccf88SSatish Balay 
853ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
854d71ae5a4SJacob Faibussowitsch {
85544a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8563a40ed3dSBarry Smith 
8573a40ed3dSBarry Smith   PetscFunctionBegin;
8589566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8599566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8611eb62cbbSBarry Smith }
8621eb62cbbSBarry Smith 
863ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
864d71ae5a4SJacob Faibussowitsch {
8651b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8661b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8676e520ac8SStefano Zampini   PetscInt    r, len;
8689939a2d1SBarry Smith   PetscBool   cong;
8691eb62cbbSBarry Smith 
8703a40ed3dSBarry Smith   PetscFunctionBegin;
8716e520ac8SStefano Zampini   /* get locally owned rows */
8729566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8739566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
874dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
87597b48c8fSBarry Smith   if (x && b) {
8761b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8771b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8781b1dd7adSMatthew G. Knepley 
87928b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8809566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8819566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8821b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8839566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8849566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
88597b48c8fSBarry Smith   }
886a92ad425SStefano Zampini 
887a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8889566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8899566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
890a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
891a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
892a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
893a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
894a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
895a92ad425SStefano Zampini 
896a92ad425SStefano Zampini     nnwA = aijA->nonew;
897a92ad425SStefano Zampini     nnwB = aijB->nonew;
898a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
899a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
900a92ad425SStefano Zampini     if (!nnzA) {
9019566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
902a92ad425SStefano Zampini       aijA->nonew = 0;
903a92ad425SStefano Zampini     }
904a92ad425SStefano Zampini     if (!nnzB) {
9059566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
906a92ad425SStefano Zampini       aijB->nonew = 0;
907a92ad425SStefano Zampini     }
908a92ad425SStefano Zampini     /* Must zero here before the next loop */
9099566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9109566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9111b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
9121b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
913a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
9149566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
915e2d53e46SBarry Smith     }
916a92ad425SStefano Zampini     aijA->nonew = nnwA;
917a92ad425SStefano Zampini     aijB->nonew = nnwB;
9186eb55b6aSBarry Smith   } else {
9199566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9209566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9216eb55b6aSBarry Smith   }
9229566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9254f9cfa9eSBarry Smith 
9269939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
927f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9289939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
929462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9309939a2d1SBarry Smith   }
9313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9321eb62cbbSBarry Smith }
9331eb62cbbSBarry Smith 
934ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
935d71ae5a4SJacob Faibussowitsch {
9369c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9376497c311SBarry Smith   PetscInt           n = A->rmap->n;
938131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
93954bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
940131c27b5Sprj-   PetscMPIInt        p = 0;
94154bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
94254bd4135SMatthew G. Knepley   PetscSF            sf;
9439c7c4993SBarry Smith   const PetscScalar *xx;
944fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
945564f14d6SBarry Smith   Vec                xmask, lmask;
946564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
947564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
948564f14d6SBarry Smith   PetscScalar       *aa;
9499c7c4993SBarry Smith 
9509c7c4993SBarry Smith   PetscFunctionBegin;
95154bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
95354bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
95554bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
95654bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
957aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9585ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9599566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9605ba17502SJed Brown     }
96154bd4135SMatthew G. Knepley     rrows[r].rank  = p;
96254bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9639c7c4993SBarry Smith   }
9649566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9659566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
96654bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9679566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9689566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9699566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
97054bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9719371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9729371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
973564f14d6SBarry Smith   /* zero diagonal part of matrix */
9749566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9754cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9769566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9779566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9789566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
97954bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9809566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9819566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9829566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9839566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
984a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
985a92ad425SStefano Zampini     PetscBool cong;
986a92ad425SStefano Zampini 
9879566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
98828b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9899566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9909566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9919566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9929566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
993377aa5a1SBarry Smith   }
9949566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9954cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
997564f14d6SBarry Smith   ii = aij->i;
9988e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
999564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
1000564f14d6SBarry Smith   if (aij->compressedrow.use) {
1001564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
1002564f14d6SBarry Smith     ii   = aij->compressedrow.i;
1003564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
1004564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1005564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1006564f14d6SBarry Smith       aj = aij->j + ii[i];
1007fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1008564f14d6SBarry Smith 
1009564f14d6SBarry Smith       for (j = 0; j < n; j++) {
101025266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1011377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
1012564f14d6SBarry Smith           *aa = 0.0;
1013564f14d6SBarry Smith         }
1014564f14d6SBarry Smith         aa++;
1015564f14d6SBarry Smith         aj++;
1016564f14d6SBarry Smith       }
1017564f14d6SBarry Smith       ridx++;
1018564f14d6SBarry Smith     }
1019564f14d6SBarry Smith   } else { /* do not use compressed row format */
1020564f14d6SBarry Smith     m = l->B->rmap->n;
1021564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1022564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1023564f14d6SBarry Smith       aj = aij->j + ii[i];
1024fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1025564f14d6SBarry Smith       for (j = 0; j < n; j++) {
102625266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1027377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1028564f14d6SBarry Smith           *aa = 0.0;
1029564f14d6SBarry Smith         }
1030564f14d6SBarry Smith         aa++;
1031564f14d6SBarry Smith         aj++;
1032564f14d6SBarry Smith       }
1033564f14d6SBarry Smith     }
1034564f14d6SBarry Smith   }
1035a92ad425SStefano Zampini   if (x && b) {
10369566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10379566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1038377aa5a1SBarry Smith   }
10399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10419566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10429566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10434f9cfa9eSBarry Smith 
10444f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1045f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10464f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1047462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10484f9cfa9eSBarry Smith   }
10493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10509c7c4993SBarry Smith }
10519c7c4993SBarry Smith 
1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1053d71ae5a4SJacob Faibussowitsch {
1054416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1055b1d57f15SBarry Smith   PetscInt    nt;
105619b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1057416022c9SBarry Smith 
10583a40ed3dSBarry Smith   PetscFunctionBegin;
10599566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
106008401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10619566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1062296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10639566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1064296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10661eb62cbbSBarry Smith }
10671eb62cbbSBarry Smith 
1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1069d71ae5a4SJacob Faibussowitsch {
1070bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1071bd0c2dcbSBarry Smith 
1072bd0c2dcbSBarry Smith   PetscFunctionBegin;
10739566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1075bd0c2dcbSBarry Smith }
1076bd0c2dcbSBarry Smith 
1077ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1078d71ae5a4SJacob Faibussowitsch {
1079416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
108001ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10813a40ed3dSBarry Smith 
10823a40ed3dSBarry Smith   PetscFunctionBegin;
10839566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10849566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10859566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10869566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1088da3a660dSBarry Smith }
1089da3a660dSBarry Smith 
1090ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1091d71ae5a4SJacob Faibussowitsch {
1092416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1093da3a660dSBarry Smith 
10943a40ed3dSBarry Smith   PetscFunctionBegin;
1095da3a660dSBarry Smith   /* do nondiagonal part */
10969566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1097da3a660dSBarry Smith   /* do local part */
10989566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10999613dc34SJunchao Zhang   /* add partial results together */
11009566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11019566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1103da3a660dSBarry Smith }
1104da3a660dSBarry Smith 
1105ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1106d71ae5a4SJacob Faibussowitsch {
11074f423910Svictorle   MPI_Comm    comm;
1108ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1109ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1110cd0d46ebSvictorle   IS          Me, Notme;
1111b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
111254d735aeSStefano Zampini   PetscBool   lf;
1113b1d57f15SBarry Smith   PetscMPIInt size;
1114cd0d46ebSvictorle 
1115cd0d46ebSvictorle   PetscFunctionBegin;
111642e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
11179566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
1118462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
11193ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11209566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11223ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
112342e5f5b4Svictorle 
11247dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11259566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11269566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1128cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1129cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11309566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11319566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11329566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
113366501d38Svictorle   Aoff = Aoffs[0];
11349566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
113566501d38Svictorle   Boff = Boffs[0];
11369566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11379566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11389566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11399566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11409566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11419566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1143cd0d46ebSvictorle }
1144cd0d46ebSvictorle 
1145ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1146d71ae5a4SJacob Faibussowitsch {
1147416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1148da3a660dSBarry Smith 
11493a40ed3dSBarry Smith   PetscFunctionBegin;
1150da3a660dSBarry Smith   /* do nondiagonal part */
11519566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1152da3a660dSBarry Smith   /* do local part */
11539566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11549613dc34SJunchao Zhang   /* add partial results together */
11559566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11569566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1158da3a660dSBarry Smith }
1159da3a660dSBarry Smith 
11601eb62cbbSBarry Smith /*
11611eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11621eb62cbbSBarry Smith    diagonal block
11631eb62cbbSBarry Smith */
1164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1165d71ae5a4SJacob Faibussowitsch {
1166416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11673a40ed3dSBarry Smith 
11683a40ed3dSBarry Smith   PetscFunctionBegin;
116908401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1170aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11719566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11731eb62cbbSBarry Smith }
11741eb62cbbSBarry Smith 
1175ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1176d71ae5a4SJacob Faibussowitsch {
1177052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11783a40ed3dSBarry Smith 
11793a40ed3dSBarry Smith   PetscFunctionBegin;
11809566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11819566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1183052efed2SBarry Smith }
1184052efed2SBarry Smith 
1185ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1186d71ae5a4SJacob Faibussowitsch {
11878e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11888e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11898e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11903ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11912e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
119217a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
119317a3732bSBarry Smith   PetscInt64         nz, hnz;
11943ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11953ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11963ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
119717a3732bSBarry Smith   PetscMPIInt        rank;
11988e2fed03SBarry Smith 
11998e2fed03SBarry Smith   PetscFunctionBegin;
12009566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
12013ea6fe3dSLisandro Dalcin 
12023ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
12033ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
12043ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
12053ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
12063ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
12078e2fed03SBarry Smith   nz = A->nz + B->nz;
12083ea6fe3dSLisandro Dalcin 
12093ea6fe3dSLisandro Dalcin   /* write matrix header */
12100700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
12119371c9d4SSatish Balay   header[1] = M;
12129371c9d4SSatish Balay   header[2] = N;
121317a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
121417a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
1215835f2295SStefano Zampini   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
12169566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12178e2fed03SBarry Smith 
12183ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12203ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12219566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12229566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12238e2fed03SBarry Smith 
12243ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12263ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12273ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12283ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12293ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12308e2fed03SBarry Smith     }
12319371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12329371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12338e2fed03SBarry Smith   }
123417a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12359566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12369566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12378e2fed03SBarry Smith 
12383ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12423ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12433ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12443ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12452e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12468e2fed03SBarry Smith     }
12479371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12489371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12498e2fed03SBarry Smith   }
12509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
125217a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12539566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12549566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12558e2fed03SBarry Smith 
12563ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12579566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12598e2fed03SBarry Smith }
12608e2fed03SBarry Smith 
12619804daf3SBarry Smith #include <petscdraw.h>
1262ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1263d71ae5a4SJacob Faibussowitsch {
126444a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
126532dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1266ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1267b0a32e0cSBarry Smith   PetscViewer       sviewer;
1268f3ef73ceSBarry Smith   PetscViewerFormat format;
1269416022c9SBarry Smith 
12703a40ed3dSBarry Smith   PetscFunctionBegin;
12719566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12729566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12739566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
127432077d6dSBarry Smith   if (iascii) {
12759566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1276ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
12771690c2aeSBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12789566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12799566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1280835f2295SStefano Zampini       for (i = 0; i < size; i++) {
1281ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1282ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1283ef5fdb51SBarry Smith         navg += nz[i];
1284ef5fdb51SBarry Smith       }
12859566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1286ef5fdb51SBarry Smith       navg = navg / size;
12879566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12883ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1289ef5fdb51SBarry Smith     }
12909566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1291456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12924e220ebcSLois Curfman McInnes       MatInfo   info;
12936335e310SSatish Balay       PetscInt *inodes = NULL;
1294923f20ffSKris Buschelman 
12959566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12969566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12979566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12989566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1299923f20ffSKris Buschelman       if (!inodes) {
13009371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
1301835f2295SStefano Zampini                                                      info.memory));
13026831982aSBarry Smith       } else {
1303835f2295SStefano Zampini         PetscCall(
1304835f2295SStefano Zampini           PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory));
13056831982aSBarry Smith       }
13069566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
13079566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13089566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
13099566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13109566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
13119566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
13129566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
13139566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
13143ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1315fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1316923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13179566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1318923f20ffSKris Buschelman       if (inodes) {
13199566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1320d38fa0fbSBarry Smith       } else {
13219566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1322d38fa0fbSBarry Smith       }
13233ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13244aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13253ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
132608480c60SBarry Smith     }
13278e2fed03SBarry Smith   } else if (isbinary) {
13288e2fed03SBarry Smith     if (size == 1) {
13299566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13309566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13318e2fed03SBarry Smith     } else {
13329566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13338e2fed03SBarry Smith     }
13343ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
133571e56450SStefano Zampini   } else if (iascii && size == 1) {
13369566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13379566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13383ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13390f5bd95cSBarry Smith   } else if (isdraw) {
1340b0a32e0cSBarry Smith     PetscDraw draw;
1341ace3abfcSBarry Smith     PetscBool isnull;
13429566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13439566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13443ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
134519bcc07fSBarry Smith   }
134619bcc07fSBarry Smith 
134771e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
134871e56450SStefano Zampini     Mat A = NULL, Av;
134971e56450SStefano Zampini     IS  isrow, iscol;
13502ee70a88SLois Curfman McInnes 
13519566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13529566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13539566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13549566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
135571e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
135671e56450SStefano Zampini     /*
135771e56450SStefano Zampini     Mat *AA, A = NULL, Av;
135871e56450SStefano Zampini     IS  isrow,iscol;
135971e56450SStefano Zampini 
13609566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13619566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13629566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1363dd400576SPatrick Sanan     if (rank == 0) {
13649566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
136571e56450SStefano Zampini        A    = AA[0];
136671e56450SStefano Zampini        Av   = AA[0];
136795373324SBarry Smith     }
13689566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
136971e56450SStefano Zampini */
13709566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13719566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
137255843e3eSBarry Smith     /*
137355843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1374b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
137555843e3eSBarry Smith     */
13769566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1377dd400576SPatrick Sanan     if (rank == 0) {
137848a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13799566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
138095373324SBarry Smith     }
13819566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13829566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
138395373324SBarry Smith   }
13843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13851eb62cbbSBarry Smith }
13861eb62cbbSBarry Smith 
1387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1388d71ae5a4SJacob Faibussowitsch {
1389ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1390416022c9SBarry Smith 
13913a40ed3dSBarry Smith   PetscFunctionBegin;
13929566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13939566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13949566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13959566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
139648a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1398416022c9SBarry Smith }
1399416022c9SBarry Smith 
1400ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1401d71ae5a4SJacob Faibussowitsch {
140244a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1403f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1404ace3abfcSBarry Smith   PetscBool   hasop;
14058a729477SBarry Smith 
14063a40ed3dSBarry Smith   PetscFunctionBegin;
1407a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
14089566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14093ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1410a2b30743SBarry Smith   }
1411a2b30743SBarry Smith 
141248a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
14134e980039SJed Brown 
1414c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1415da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14169566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14172798e883SHong Zhang       its--;
1418da3a660dSBarry Smith     }
14192798e883SHong Zhang 
14202798e883SHong Zhang     while (its--) {
14219566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14229566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14232798e883SHong Zhang 
1424c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14259566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14269566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14272798e883SHong Zhang 
1428c14dc6b6SHong Zhang       /* local sweep */
14299566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14302798e883SHong Zhang     }
14313a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1432da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14339566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14342798e883SHong Zhang       its--;
1435da3a660dSBarry Smith     }
14362798e883SHong Zhang     while (its--) {
14379566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14389566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14392798e883SHong Zhang 
1440c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14419566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14429566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1443c14dc6b6SHong Zhang 
1444c14dc6b6SHong Zhang       /* local sweep */
14459566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14462798e883SHong Zhang     }
14473a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1448da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14499566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14502798e883SHong Zhang       its--;
1451da3a660dSBarry Smith     }
14522798e883SHong Zhang     while (its--) {
14539566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14549566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14552798e883SHong Zhang 
1456c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14579566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14589566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14592798e883SHong Zhang 
1460c14dc6b6SHong Zhang       /* local sweep */
14619566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14622798e883SHong Zhang     }
1463a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1464a7420bb7SBarry Smith     Vec xx1;
1465a7420bb7SBarry Smith 
14669566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14679566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1468a7420bb7SBarry Smith 
14699566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14709566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1471a7420bb7SBarry Smith     if (!mat->diag) {
14729566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14739566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1474a7420bb7SBarry Smith     }
14759566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1476bd0c2dcbSBarry Smith     if (hasop) {
14779566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1478bd0c2dcbSBarry Smith     } else {
14799566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1480bd0c2dcbSBarry Smith     }
14819566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1482887ee2caSBarry Smith 
14839566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1484a7420bb7SBarry Smith 
1485a7420bb7SBarry Smith     /* local sweep */
14869566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14879566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14889566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1489ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1490c14dc6b6SHong Zhang 
14919566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1492a0808db4SHong Zhang 
14937b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14958a729477SBarry Smith }
1496a66be287SLois Curfman McInnes 
1497ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1498d71ae5a4SJacob Faibussowitsch {
149972e6a0cfSJed Brown   Mat             aA, aB, Aperm;
150072e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
150172e6a0cfSJed Brown   PetscScalar    *aa, *ba;
150272e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
150372e6a0cfSJed Brown   PetscSF         rowsf, sf;
15040298fd71SBarry Smith   IS              parcolp = NULL;
150572e6a0cfSJed Brown   PetscBool       done;
150642e855d1Svictor 
150742e855d1Svictor   PetscFunctionBegin;
15089566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
15099566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
15109566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
15119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
151272e6a0cfSJed Brown 
151372e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
15149566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
15159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
15169566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
151772e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15199566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
152072e6a0cfSJed Brown 
152172e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15249566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
152572e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15269566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15279566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15289566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152972e6a0cfSJed Brown 
15309566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15319566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15329566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
153372e6a0cfSJed Brown 
153472e6a0cfSJed Brown   /* Find out where my gcols should go */
15359566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15379566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15389566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15399566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15409566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15419566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15429566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
154372e6a0cfSJed Brown 
15449566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15459566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15469566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
154772e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1548131c27b5Sprj-     PetscInt    row = rdest[i];
1549131c27b5Sprj-     PetscMPIInt rowner;
15509566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
155172e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1552131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1553131c27b5Sprj-       PetscMPIInt cowner;
15549566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
155572e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155672e6a0cfSJed Brown       else onnz[i]++;
155772e6a0cfSJed Brown     }
155872e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1559131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1560131c27b5Sprj-       PetscMPIInt cowner;
15619566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
156272e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
156372e6a0cfSJed Brown       else onnz[i]++;
156472e6a0cfSJed Brown     }
156572e6a0cfSJed Brown   }
15669566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15679566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15689566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15699566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15709566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
157172e6a0cfSJed Brown 
15729566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15739566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15749566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
157572e6a0cfSJed Brown   for (i = 0; i < m; i++) {
157672e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1577970468b0SJed Brown     PetscInt  j0, rowlen;
157872e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1579970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1580970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15819566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1582970468b0SJed Brown     }
158372e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1584970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1585970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15869566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1587970468b0SJed Brown     }
158872e6a0cfSJed Brown   }
15899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15919566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15929566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15959566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15969566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15979566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15989566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
159972e6a0cfSJed Brown   *B = Aperm;
16003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
160142e855d1Svictor }
160242e855d1Svictor 
1603ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1604d71ae5a4SJacob Faibussowitsch {
1605c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1606c5e4d11fSDmitry Karpeev 
1607c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
16089566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1609c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
16103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1611c5e4d11fSDmitry Karpeev }
1612c5e4d11fSDmitry Karpeev 
1613ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1614d71ae5a4SJacob Faibussowitsch {
1615a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1616a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16173966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1618a66be287SLois Curfman McInnes 
16193a40ed3dSBarry Smith   PetscFunctionBegin;
16204e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16219566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16222205254eSKarl Rupp 
16239371c9d4SSatish Balay   isend[0] = info->nz_used;
16249371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16259371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16269371c9d4SSatish Balay   isend[3] = info->memory;
16279371c9d4SSatish Balay   isend[4] = info->mallocs;
16282205254eSKarl Rupp 
16299566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16302205254eSKarl Rupp 
16319371c9d4SSatish Balay   isend[0] += info->nz_used;
16329371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16339371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16349371c9d4SSatish Balay   isend[3] += info->memory;
16359371c9d4SSatish Balay   isend[4] += info->mallocs;
1636a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16374e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16384e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16394e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16404e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16414e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1642a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1643462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16442205254eSKarl Rupp 
16454e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16464e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16474e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16484e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16494e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1650a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1651462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16522205254eSKarl Rupp 
16534e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16544e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16554e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16564e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16574e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1658a66be287SLois Curfman McInnes   }
16594e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16604e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16614e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1663a66be287SLois Curfman McInnes }
1664a66be287SLois Curfman McInnes 
1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1666d71ae5a4SJacob Faibussowitsch {
1667c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1668c74985f6SBarry Smith 
16693a40ed3dSBarry Smith   PetscFunctionBegin;
167012c028f9SKris Buschelman   switch (op) {
1671512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
167212c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
167328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1674a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
167512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16760ad02fcaSStefano Zampini   case MAT_USE_INODES:
167712c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16781a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1679fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16809566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16819566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168212c028f9SKris Buschelman     break;
168312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
168443674050SBarry Smith     MatCheckPreallocated(A, 1);
16854e0d8c25SBarry Smith     a->roworiented = flg;
16862205254eSKarl Rupp 
16879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16889566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168912c028f9SKris Buschelman     break;
16908c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1691d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1692d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1693d71ae5a4SJacob Faibussowitsch     break;
1694d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1695d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1696d71ae5a4SJacob Faibussowitsch     break;
1697c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1698ffa07934SHong Zhang   case MAT_SPD:
169977e54ba9SKris Buschelman   case MAT_SYMMETRIC:
170077e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1701bf108f30SBarry Smith   case MAT_HERMITIAN:
1702bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1703b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1704b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1705b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
170677e54ba9SKris Buschelman     break;
1707d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1708d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1709d71ae5a4SJacob Faibussowitsch     break;
1710957cac9fSHong Zhang   case MAT_STRUCTURE_ONLY:
1711957cac9fSHong Zhang     /* The option is handled directly by MatSetOption() */
1712957cac9fSHong Zhang     break;
1713d71ae5a4SJacob Faibussowitsch   default:
1714d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
17153a40ed3dSBarry Smith   }
17163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1717c74985f6SBarry Smith }
1718c74985f6SBarry Smith 
1719d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1720d71ae5a4SJacob Faibussowitsch {
1721154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
172287828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1723d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1724d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1725b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
172639e00950SLois Curfman McInnes 
17273a40ed3dSBarry Smith   PetscFunctionBegin;
172828b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17297a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17307a0afa10SBarry Smith 
173170f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17327a0afa10SBarry Smith     /*
17337a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17347a0afa10SBarry Smith     */
17357a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1736b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1737d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17387a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17392205254eSKarl Rupp       if (max < tmp) max = tmp;
17407a0afa10SBarry Smith     }
17419566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17427a0afa10SBarry Smith   }
17437a0afa10SBarry Smith 
1744aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1745abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
174639e00950SLois Curfman McInnes 
17479371c9d4SSatish Balay   pvA = &vworkA;
17489371c9d4SSatish Balay   pcA = &cworkA;
17499371c9d4SSatish Balay   pvB = &vworkB;
17509371c9d4SSatish Balay   pcB = &cworkB;
17519371c9d4SSatish Balay   if (!v) {
17529371c9d4SSatish Balay     pvA = NULL;
17539371c9d4SSatish Balay     pvB = NULL;
17549371c9d4SSatish Balay   }
17559371c9d4SSatish Balay   if (!idx) {
17569371c9d4SSatish Balay     pcA = NULL;
17579371c9d4SSatish Balay     if (!v) pcB = NULL;
17589371c9d4SSatish Balay   }
17599566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17609566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1761154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1762154123eaSLois Curfman McInnes 
176370f0671dSBarry Smith   cmap = mat->garray;
1764154123eaSLois Curfman McInnes   if (v || idx) {
1765154123eaSLois Curfman McInnes     if (nztot) {
1766154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1767b1d57f15SBarry Smith       PetscInt imark = -1;
1768154123eaSLois Curfman McInnes       if (v) {
176970f0671dSBarry Smith         *v = v_p = mat->rowvalues;
177039e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
177170f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1772154123eaSLois Curfman McInnes           else break;
1773154123eaSLois Curfman McInnes         }
1774154123eaSLois Curfman McInnes         imark = i;
177570f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
177670f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1777154123eaSLois Curfman McInnes       }
1778154123eaSLois Curfman McInnes       if (idx) {
177970f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
178070f0671dSBarry Smith         if (imark > -1) {
1781ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
178270f0671dSBarry Smith         } else {
1783154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
178470f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1785154123eaSLois Curfman McInnes             else break;
1786154123eaSLois Curfman McInnes           }
1787154123eaSLois Curfman McInnes           imark = i;
178870f0671dSBarry Smith         }
178970f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
179070f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
179139e00950SLois Curfman McInnes       }
17923f97c4b0SBarry Smith     } else {
1793f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1794f4259b30SLisandro Dalcin       if (v) *v = NULL;
17951ca473b0SSatish Balay     }
1796154123eaSLois Curfman McInnes   }
179739e00950SLois Curfman McInnes   *nz = nztot;
17989566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17999566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
18003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
180139e00950SLois Curfman McInnes }
180239e00950SLois Curfman McInnes 
1803d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1804d71ae5a4SJacob Faibussowitsch {
18057a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
18063a40ed3dSBarry Smith 
18073a40ed3dSBarry Smith   PetscFunctionBegin;
180828b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
18097a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
18103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
181139e00950SLois Curfman McInnes }
181239e00950SLois Curfman McInnes 
1813ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1814d71ae5a4SJacob Faibussowitsch {
1815855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1816ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1817d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1818329f5518SBarry Smith   PetscReal        sum = 0.0;
1819fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
182004ca555eSLois Curfman McInnes 
18213a40ed3dSBarry Smith   PetscFunctionBegin;
182217699dbbSLois Curfman McInnes   if (aij->size == 1) {
18239566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
182437fa93a5SLois Curfman McInnes   } else {
18259566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18269566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
182704ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1828fff043a9SJunchao Zhang       v = amata;
182904ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18309371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18319371c9d4SSatish Balay         v++;
183204ca555eSLois Curfman McInnes       }
1833fff043a9SJunchao Zhang       v = bmata;
183404ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18359371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18369371c9d4SSatish Balay         v++;
183704ca555eSLois Curfman McInnes       }
1838462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18398f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18409566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18413a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1842*e91c04dfSPierre Jolivet       PetscReal *tmp;
1843b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18449566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
184504ca555eSLois Curfman McInnes       *norm = 0.0;
18469371c9d4SSatish Balay       v     = amata;
18479371c9d4SSatish Balay       jj    = amat->j;
184804ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18499371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18509371c9d4SSatish Balay         v++;
185104ca555eSLois Curfman McInnes       }
18529371c9d4SSatish Balay       v  = bmata;
18539371c9d4SSatish Balay       jj = bmat->j;
185404ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18559371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18569371c9d4SSatish Balay         v++;
185704ca555eSLois Curfman McInnes       }
1858*e91c04dfSPierre Jolivet       PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1859d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
1860*e91c04dfSPierre Jolivet         if (tmp[j] > *norm) *norm = tmp[j];
186104ca555eSLois Curfman McInnes       }
18629566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18639566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18643a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1865329f5518SBarry Smith       PetscReal ntemp = 0.0;
1866d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18678e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
186804ca555eSLois Curfman McInnes         sum = 0.0;
186904ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18709371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18719371c9d4SSatish Balay           v++;
187204ca555eSLois Curfman McInnes         }
18738e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
187404ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18759371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18769371c9d4SSatish Balay           v++;
187704ca555eSLois Curfman McInnes         }
1878515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
187904ca555eSLois Curfman McInnes       }
1880462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18819566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1882ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18839566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18849566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
188537fa93a5SLois Curfman McInnes   }
18863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1887855ac2c5SLois Curfman McInnes }
1888855ac2c5SLois Curfman McInnes 
1889ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1890d71ae5a4SJacob Faibussowitsch {
1891a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1892a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1893071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1894071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1895a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1896ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1897b7c46309SBarry Smith 
18983a40ed3dSBarry Smith   PetscFunctionBegin;
18997fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
19009371c9d4SSatish Balay   ma = A->rmap->n;
19019371c9d4SSatish Balay   na = A->cmap->n;
19029371c9d4SSatish Balay   mb = a->B->rmap->n;
19039371c9d4SSatish Balay   nb = a->B->cmap->n;
19049371c9d4SSatish Balay   ai = Aloc->i;
19059371c9d4SSatish Balay   aj = Aloc->j;
19069371c9d4SSatish Balay   bi = Bloc->i;
19079371c9d4SSatish Balay   bj = Bloc->j;
1908fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
190980bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
191080bcc5a1SJed Brown     PetscSFNode         *oloc;
1911713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
191280bcc5a1SJed Brown 
19139566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
191480bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19159566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1916cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
191780bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19189566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
191980bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
192080bcc5a1SJed Brown     /* map those to global */
19219566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19229566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19239566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19249566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
192557168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
192657168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19279566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1928d4bb536fSBarry Smith 
19299566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19309566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
19319566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs)));
19329566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19339566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19349566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1935fc4dec0aSBarry Smith   } else {
1936fc4dec0aSBarry Smith     B = *matout;
19379566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1938fc4dec0aSBarry Smith   }
1939b7c46309SBarry Smith 
1940f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1941a8661f62Sandi selinger   A_diag      = a->A;
1942a8661f62Sandi selinger   B_diag      = &b->A;
1943a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1944a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1945a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1946a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1947f79cb1a0Sandi selinger 
1948f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1949ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1950f79cb1a0Sandi selinger 
19514cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1952a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19537fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19549566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1955f79cb1a0Sandi selinger 
1956b7c46309SBarry Smith   /* copy over the B part */
19579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19589566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1959ce496241SStefano Zampini   pbv = bv;
1960d0f46423SBarry Smith   row = A->rmap->rstart;
19612205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
196261a2fbbaSHong Zhang   cols_tmp = cols;
1963da668accSHong Zhang   for (i = 0; i < mb; i++) {
1964da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19659566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19662205254eSKarl Rupp     row++;
1967720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1968720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1969b7c46309SBarry Smith   }
19709566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19719566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1972fc73b1b3SBarry Smith 
19739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1975cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19760de55854SLois Curfman McInnes     *matout = B;
19770de55854SLois Curfman McInnes   } else {
19789566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19790de55854SLois Curfman McInnes   }
19803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1981b7c46309SBarry Smith }
1982b7c46309SBarry Smith 
1983ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1984d71ae5a4SJacob Faibussowitsch {
19854b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19864b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1987b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1988a008b906SSatish Balay 
19893a40ed3dSBarry Smith   PetscFunctionBegin;
19909566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19914b967eb1SSatish Balay   if (rr) {
19929566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
199308401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19944b967eb1SSatish Balay     /* Overlap communication with computation. */
19959566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1996a008b906SSatish Balay   }
19974b967eb1SSatish Balay   if (ll) {
19989566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
199908401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
2000dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
20014b967eb1SSatish Balay   }
20024b967eb1SSatish Balay   /* scale  the diagonal block */
2003dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
20044b967eb1SSatish Balay 
20054b967eb1SSatish Balay   if (rr) {
20064b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
20079566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
2008dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
20094b967eb1SSatish Balay   }
20103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2011a008b906SSatish Balay }
2012a008b906SSatish Balay 
2013ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2014d71ae5a4SJacob Faibussowitsch {
2015bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20163a40ed3dSBarry Smith 
20173a40ed3dSBarry Smith   PetscFunctionBegin;
20189566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2020bb5a7306SBarry Smith }
2021bb5a7306SBarry Smith 
2022ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2023d71ae5a4SJacob Faibussowitsch {
2024d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2025d4bb536fSBarry Smith   Mat         a, b, c, d;
2026ace3abfcSBarry Smith   PetscBool   flg;
2027d4bb536fSBarry Smith 
20283a40ed3dSBarry Smith   PetscFunctionBegin;
20299371c9d4SSatish Balay   a = matA->A;
20309371c9d4SSatish Balay   b = matA->B;
20319371c9d4SSatish Balay   c = matB->A;
20329371c9d4SSatish Balay   d = matB->B;
2033d4bb536fSBarry Smith 
20349566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
203548a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
2036462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2038d4bb536fSBarry Smith }
2039d4bb536fSBarry Smith 
2040ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2041d71ae5a4SJacob Faibussowitsch {
2042cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2043cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2044cb5b572fSBarry Smith 
2045cb5b572fSBarry Smith   PetscFunctionBegin;
204633f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
204733f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2048cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2049cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2050cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2051cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2052cb5b572fSBarry Smith        then copying the submatrices */
20539566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2054cb5b572fSBarry Smith   } else {
20559566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20569566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2057cb5b572fSBarry Smith   }
20589566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2060cb5b572fSBarry Smith }
2061cb5b572fSBarry Smith 
2062001ddc4fSHong Zhang /*
2063001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2064001ddc4fSHong Zhang    have different nonzero structure.
2065001ddc4fSHong Zhang */
2066d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2067d71ae5a4SJacob Faibussowitsch {
2068001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
206995b7e79eSJed Brown 
207095b7e79eSJed Brown   PetscFunctionBegin;
207195b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
207295b7e79eSJed Brown   for (i = 0; i < m; i++) {
20738e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2074001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2075001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
207695b7e79eSJed Brown     nnz[i] = 0;
207795b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2078001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2079001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
208095b7e79eSJed Brown       nnz[i]++;
208195b7e79eSJed Brown     }
208295b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
208395b7e79eSJed Brown   }
20843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
208595b7e79eSJed Brown }
208695b7e79eSJed Brown 
2087001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2088d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2089d71ae5a4SJacob Faibussowitsch {
2090001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2091001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2092001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2093001ddc4fSHong Zhang 
2094001ddc4fSHong Zhang   PetscFunctionBegin;
20959566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2097001ddc4fSHong Zhang }
2098001ddc4fSHong Zhang 
2099ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2100d71ae5a4SJacob Faibussowitsch {
2101ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2102ac90fabeSBarry Smith 
2103ac90fabeSBarry Smith   PetscFunctionBegin;
2104ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
21059566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
21069566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2107ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
21089566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2109ac90fabeSBarry Smith   } else {
21109f5f6813SShri Abhyankar     Mat       B;
21119f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2112d9d719b4SStefano Zampini 
21139566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21149566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21159566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21169566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21179566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21189566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21199566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21209566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21219566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21229566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21239566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21249566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21259566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2126ac90fabeSBarry Smith   }
21273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2128ac90fabeSBarry Smith }
2129ac90fabeSBarry Smith 
21302726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2131354c94deSBarry Smith 
2132ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2133d71ae5a4SJacob Faibussowitsch {
21345f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21355f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2136354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2137354c94deSBarry Smith 
21389566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21399566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21405f80ce2aSJacob Faibussowitsch   }
21413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2142354c94deSBarry Smith }
2143354c94deSBarry Smith 
2144ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2145d71ae5a4SJacob Faibussowitsch {
214699cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214799cafbc1SBarry Smith 
214899cafbc1SBarry Smith   PetscFunctionBegin;
21499566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21509566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215299cafbc1SBarry Smith }
215399cafbc1SBarry Smith 
2154ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2155d71ae5a4SJacob Faibussowitsch {
215699cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
215799cafbc1SBarry Smith 
215899cafbc1SBarry Smith   PetscFunctionBegin;
21599566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21609566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
216299cafbc1SBarry Smith }
216399cafbc1SBarry Smith 
2164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2165d71ae5a4SJacob Faibussowitsch {
2166c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2167475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
2168475b8b61SHong Zhang   PetscScalar       *va, *vv;
2169475b8b61SHong Zhang   Vec                vB, vA;
2170475b8b61SHong Zhang   const PetscScalar *vb;
2171c91732d9SHong Zhang 
2172c91732d9SHong Zhang   PetscFunctionBegin;
2173c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
21749566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2175475b8b61SHong Zhang 
21769566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
2177c91732d9SHong Zhang   if (idx) {
2178475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2179d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2180c91732d9SHong Zhang     }
2181c91732d9SHong Zhang   }
2182c91732d9SHong Zhang 
2183c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
21849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21859566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2186c91732d9SHong Zhang 
21879566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21889566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2189475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2190c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2191475b8b61SHong Zhang       vv[i] = vb[i];
2192c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2193475b8b61SHong Zhang     } else {
2194475b8b61SHong Zhang       vv[i] = va[i];
21959371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2196c91732d9SHong Zhang     }
2197c91732d9SHong Zhang   }
21989566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
21999566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
22009566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
22019566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
22029566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
22039566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
22043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2205c91732d9SHong Zhang }
2206c91732d9SHong Zhang 
2207eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2208eede4a3fSMark Adams {
2209eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2210eede4a3fSMark Adams   Vec         vB, vA;
2211eede4a3fSMark Adams 
2212eede4a3fSMark Adams   PetscFunctionBegin;
2213c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
2214eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2215c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
2216eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2217eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2218eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2219eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2220eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2221eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2222eede4a3fSMark Adams }
2223eede4a3fSMark Adams 
2224ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2225d71ae5a4SJacob Faibussowitsch {
2226f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2227f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2228f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2229f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2230f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2231f07e67edSHong Zhang   Vec                diagV, offdiagV;
2232ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2233ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2234f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2235f07e67edSHong Zhang   Mat                B = mat->B;
2236f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2237c87e5d42SMatthew Knepley 
2238c87e5d42SMatthew Knepley   PetscFunctionBegin;
2239f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2240f07e67edSHong Zhang   if (A->cmap->N == n) {
22419566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22429566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22439566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22449566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22459566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22463ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2247f07e67edSHong Zhang   } else if (n == 0) {
2248f07e67edSHong Zhang     if (m) {
22499566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22509371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22519371c9d4SSatish Balay         a[r] = 0.0;
22529371c9d4SSatish Balay         if (idx) idx[r] = -1;
22539371c9d4SSatish Balay       }
22549566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2255f07e67edSHong Zhang     }
22563ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2257f07e67edSHong Zhang   }
2258f07e67edSHong Zhang 
22599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22609566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22619566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22629566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2263f07e67edSHong Zhang 
2264f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2266ce496241SStefano Zampini   ba = bav;
2267f07e67edSHong Zhang   bi = b->i;
2268f07e67edSHong Zhang   bj = b->j;
22699566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2270f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2271f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2272f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22739371c9d4SSatish Balay       offdiagA[r]   = *ba;
22749371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2275f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2276f07e67edSHong Zhang       offdiagA[r] = 0.0;
2277f07e67edSHong Zhang 
2278f07e67edSHong Zhang       /* Find first hole in the cmap */
2279f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2280f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2281f07e67edSHong Zhang         if (col > j && j < cstart) {
2282f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2283f07e67edSHong Zhang           break;
2284f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2285f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2286f07e67edSHong Zhang           break;
2287f07e67edSHong Zhang         }
2288f07e67edSHong Zhang       }
22894e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2290f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2291f07e67edSHong Zhang         if (ncols == 0) {
2292f07e67edSHong Zhang           if (cstart) {
2293f07e67edSHong Zhang             offdiagIdx[r] = 0;
2294f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2295f07e67edSHong Zhang         } else { /* ncols > 0 */
2296f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2297f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2298f07e67edSHong Zhang         }
2299f07e67edSHong Zhang       }
2300f07e67edSHong Zhang     }
2301f07e67edSHong Zhang 
2302f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
23039371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
23049371c9d4SSatish Balay         offdiagA[r]   = *ba;
23059371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
23069371c9d4SSatish Balay       }
23079371c9d4SSatish Balay       ba++;
23089371c9d4SSatish Balay       bj++;
2309f07e67edSHong Zhang     }
2310f07e67edSHong Zhang   }
2311f07e67edSHong Zhang 
23129566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
23139566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2314f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2315f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2316f07e67edSHong Zhang       a[r] = diagA[r];
2317f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2318f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2319f07e67edSHong Zhang       a[r] = diagA[r];
2320c87e5d42SMatthew Knepley       if (idx) {
2321f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2322f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2323f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2324f07e67edSHong Zhang       }
2325f07e67edSHong Zhang     } else {
2326f07e67edSHong Zhang       a[r] = offdiagA[r];
2327f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2328c87e5d42SMatthew Knepley     }
2329c87e5d42SMatthew Knepley   }
23309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23319566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23329566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23339566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23349566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23359566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23369566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2338c87e5d42SMatthew Knepley }
2339c87e5d42SMatthew Knepley 
2340ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2341d71ae5a4SJacob Faibussowitsch {
234203bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2343fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2344fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
234503bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
234603bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
234703bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2348ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2349ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2350fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2351fa213d2fSHong Zhang   Mat                B = mat->B;
2352fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
235303bc72f1SMatthew Knepley 
235403bc72f1SMatthew Knepley   PetscFunctionBegin;
2355fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2356fa213d2fSHong Zhang   if (A->cmap->N == n) {
23579566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23589566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23599566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23609566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23619566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23623ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2363fa213d2fSHong Zhang   } else if (n == 0) {
2364fa213d2fSHong Zhang     if (m) {
23659566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23669371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23679371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23689371c9d4SSatish Balay         if (idx) idx[r] = -1;
23699371c9d4SSatish Balay       }
23709566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2371fa213d2fSHong Zhang     }
23723ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2373fa213d2fSHong Zhang   }
2374fa213d2fSHong Zhang 
23759566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23769566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23779566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2379fa213d2fSHong Zhang 
2380fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23819566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2382ce496241SStefano Zampini   ba = bav;
2383fa213d2fSHong Zhang   bi = b->i;
2384fa213d2fSHong Zhang   bj = b->j;
23859566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2386fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2387fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2388fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23899371c9d4SSatish Balay       offdiagA[r]   = *ba;
23909371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2391fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2392fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2393fa213d2fSHong Zhang 
2394fa213d2fSHong Zhang       /* Find first hole in the cmap */
2395fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2396fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2397fa213d2fSHong Zhang         if (col > j && j < cstart) {
2398fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2399fa213d2fSHong Zhang           break;
2400fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2401fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2402fa213d2fSHong Zhang           break;
2403fa213d2fSHong Zhang         }
2404fa213d2fSHong Zhang       }
24054e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2406fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2407fa213d2fSHong Zhang         if (ncols == 0) {
2408fa213d2fSHong Zhang           if (cstart) {
2409fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2410fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2411fa213d2fSHong Zhang         } else { /* ncols > 0 */
2412fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2413fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2414fa213d2fSHong Zhang         }
2415fa213d2fSHong Zhang       }
2416fa213d2fSHong Zhang     }
2417fa213d2fSHong Zhang 
2418fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24199371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24209371c9d4SSatish Balay         offdiagA[r]   = *ba;
24219371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24229371c9d4SSatish Balay       }
24239371c9d4SSatish Balay       ba++;
24249371c9d4SSatish Balay       bj++;
2425fa213d2fSHong Zhang     }
2426fa213d2fSHong Zhang   }
2427fa213d2fSHong Zhang 
24289566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24299566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2430fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2431fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
243203bc72f1SMatthew Knepley       a[r] = diagA[r];
2433fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2434fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2435fa213d2fSHong Zhang       a[r] = diagA[r];
2436fa213d2fSHong Zhang       if (idx) {
2437fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
243803bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2439fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2440fa213d2fSHong Zhang       }
244103bc72f1SMatthew Knepley     } else {
244203bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2443fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
244403bc72f1SMatthew Knepley     }
244503bc72f1SMatthew Knepley   }
24469566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24479566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24489566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24499566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24509566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24519566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24529566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
245403bc72f1SMatthew Knepley }
245503bc72f1SMatthew Knepley 
2456ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2457d71ae5a4SJacob Faibussowitsch {
2458c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24591a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24601a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2461c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2462c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2463c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2464ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2465ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24661a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24671a254869SHong Zhang   Mat                B = mat->B;
24681a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2469c87e5d42SMatthew Knepley 
2470c87e5d42SMatthew Knepley   PetscFunctionBegin;
24711a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24721a254869SHong Zhang   if (A->cmap->N == n) {
24739566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24749566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24759566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24769566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24779566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24783ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24791a254869SHong Zhang   } else if (n == 0) {
24801a254869SHong Zhang     if (m) {
24819566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24829371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24839371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24849371c9d4SSatish Balay         if (idx) idx[r] = -1;
24859371c9d4SSatish Balay       }
24869566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24871a254869SHong Zhang     }
24883ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24891a254869SHong Zhang   }
24901a254869SHong Zhang 
24919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24929566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24939566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24949566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24951a254869SHong Zhang 
24961a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2498ce496241SStefano Zampini   ba = bav;
24991a254869SHong Zhang   bi = b->i;
25001a254869SHong Zhang   bj = b->j;
25019566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
25021a254869SHong Zhang   for (r = 0; r < m; r++) {
25031a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
25041a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
25059371c9d4SSatish Balay       offdiagA[r]   = *ba;
25069371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
25071a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
25081a254869SHong Zhang       offdiagA[r] = 0.0;
25091a254869SHong Zhang 
25101a254869SHong Zhang       /* Find first hole in the cmap */
25111a254869SHong Zhang       for (j = 0; j < ncols; j++) {
25121a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
25131a254869SHong Zhang         if (col > j && j < cstart) {
25141a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25151a254869SHong Zhang           break;
25161a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25171a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25181a254869SHong Zhang           break;
25191a254869SHong Zhang         }
25201a254869SHong Zhang       }
25214e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25221a254869SHong Zhang         /* a hole is outside compressed Bcols */
25231a254869SHong Zhang         if (ncols == 0) {
25241a254869SHong Zhang           if (cstart) {
25251a254869SHong Zhang             offdiagIdx[r] = 0;
25261a254869SHong Zhang           } else offdiagIdx[r] = cend;
25271a254869SHong Zhang         } else { /* ncols > 0 */
25281a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25291a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25301a254869SHong Zhang         }
25311a254869SHong Zhang       }
25321a254869SHong Zhang     }
25331a254869SHong Zhang 
25341a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25359371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25369371c9d4SSatish Balay         offdiagA[r]   = *ba;
25379371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25389371c9d4SSatish Balay       }
25399371c9d4SSatish Balay       ba++;
25409371c9d4SSatish Balay       bj++;
25411a254869SHong Zhang     }
25421a254869SHong Zhang   }
25431a254869SHong Zhang 
25449566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25459566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25461a254869SHong Zhang   for (r = 0; r < m; ++r) {
25471a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2548c87e5d42SMatthew Knepley       a[r] = diagA[r];
25491a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25501a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25511a254869SHong Zhang       a[r] = diagA[r];
25521a254869SHong Zhang       if (idx) {
25531a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2554c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25551a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25561a254869SHong Zhang       }
2557c87e5d42SMatthew Knepley     } else {
2558c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25591a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2560c87e5d42SMatthew Knepley     }
2561c87e5d42SMatthew Knepley   }
25629566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25639566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25649566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25659566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25669566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25679566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25689566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2570c87e5d42SMatthew Knepley }
2571c87e5d42SMatthew Knepley 
2572d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2573d71ae5a4SJacob Faibussowitsch {
2574f6d58c54SBarry Smith   Mat *dummy;
25755494a064SHong Zhang 
25765494a064SHong Zhang   PetscFunctionBegin;
25779566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2578f6d58c54SBarry Smith   *newmat = *dummy;
25799566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25815494a064SHong Zhang }
25825494a064SHong Zhang 
2583ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2584d71ae5a4SJacob Faibussowitsch {
2585bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2586bbead8a2SBarry Smith 
2587bbead8a2SBarry Smith   PetscFunctionBegin;
25889566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25897b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2591bbead8a2SBarry Smith }
2592bbead8a2SBarry Smith 
2593d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2594d71ae5a4SJacob Faibussowitsch {
259573a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
259673a71a0fSBarry Smith 
259773a71a0fSBarry Smith   PetscFunctionBegin;
259808401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25999566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2600679944adSJunchao Zhang   if (x->assembled) {
26019566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2602679944adSJunchao Zhang   } else {
26039566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2604679944adSJunchao Zhang   }
26059566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
26069566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
26073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
260873a71a0fSBarry Smith }
2609bbead8a2SBarry Smith 
2610ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2611d71ae5a4SJacob Faibussowitsch {
2612b1b1104fSBarry Smith   PetscFunctionBegin;
2613b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2614b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2616b1b1104fSBarry Smith }
2617b1b1104fSBarry Smith 
2618b1b1104fSBarry Smith /*@
2619f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2620f2afee66SBarry Smith 
26212ef1f0ffSBarry Smith   Not Collective
2622f2afee66SBarry Smith 
2623f2afee66SBarry Smith   Input Parameter:
2624f2afee66SBarry Smith . A - the matrix
2625f2afee66SBarry Smith 
2626f2afee66SBarry Smith   Output Parameter:
2627f2afee66SBarry Smith . nz - the number of nonzeros
2628f2afee66SBarry Smith 
2629f2afee66SBarry Smith   Level: advanced
2630f2afee66SBarry Smith 
2631fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2632f2afee66SBarry Smith @*/
2633d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2634d71ae5a4SJacob Faibussowitsch {
2635f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2636f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2637dfebb78cSStefano Zampini   PetscBool   isaij;
2638f2afee66SBarry Smith 
2639f2afee66SBarry Smith   PetscFunctionBegin;
2640dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2641dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2642f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2644f2afee66SBarry Smith }
2645f2afee66SBarry Smith 
2646f2afee66SBarry Smith /*@
2647b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2648b1b1104fSBarry Smith 
2649c3339decSBarry Smith   Collective
2650b1b1104fSBarry Smith 
2651b1b1104fSBarry Smith   Input Parameters:
2652b1b1104fSBarry Smith + A  - the matrix
265311a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2654b1b1104fSBarry Smith 
265596a0c994SBarry Smith   Level: advanced
265696a0c994SBarry Smith 
2657fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2658b1b1104fSBarry Smith @*/
2659d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2660d71ae5a4SJacob Faibussowitsch {
2661b1b1104fSBarry Smith   PetscFunctionBegin;
2662cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2664b1b1104fSBarry Smith }
2665b1b1104fSBarry Smith 
2666d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject)
2667d71ae5a4SJacob Faibussowitsch {
2668b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2669b1b1104fSBarry Smith 
2670b1b1104fSBarry Smith   PetscFunctionBegin;
2671d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2672b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26739566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26741baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2675d0609cedSBarry Smith   PetscOptionsHeadEnd();
26763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2677b1b1104fSBarry Smith }
2678b1b1104fSBarry Smith 
2679ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2680d71ae5a4SJacob Faibussowitsch {
26817d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2682c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26837d68702bSBarry Smith 
26847d68702bSBarry Smith   PetscFunctionBegin;
2685c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26869566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26875519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2688b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26899566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2690b83222d8SBarry Smith     aij->nonew = nonew;
26917d68702bSBarry Smith   }
26929566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26947d68702bSBarry Smith }
26957d68702bSBarry Smith 
2696ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2697d71ae5a4SJacob Faibussowitsch {
26983b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26993b49f96aSBarry Smith 
27003b49f96aSBarry Smith   PetscFunctionBegin;
270108401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
27029566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
27033b49f96aSBarry Smith   if (d) {
27043b49f96aSBarry Smith     PetscInt rstart;
27059566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
27063b49f96aSBarry Smith     *d += rstart;
27073b49f96aSBarry Smith   }
27083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27093b49f96aSBarry Smith }
27103b49f96aSBarry Smith 
2711ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2712d71ae5a4SJacob Faibussowitsch {
2713a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2714a8ee9fb5SBarry Smith 
2715a8ee9fb5SBarry Smith   PetscFunctionBegin;
27169566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2718a8ee9fb5SBarry Smith }
27193b49f96aSBarry Smith 
272058c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2721dec0b466SHong Zhang {
2722dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2723dec0b466SHong Zhang 
2724dec0b466SHong Zhang   PetscFunctionBegin;
272558c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
272658c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2728dec0b466SHong Zhang }
2729dec0b466SHong Zhang 
2730cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2731cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2732cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2733cda55fadSBarry Smith                                        MatMult_MPIAIJ,
273497304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27357c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27367c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2737f4259b30SLisandro Dalcin                                        NULL,
2738f4259b30SLisandro Dalcin                                        NULL,
2739f4259b30SLisandro Dalcin                                        NULL,
2740f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2741f4259b30SLisandro Dalcin                                        NULL,
2742f4259b30SLisandro Dalcin                                        NULL,
274341f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2744b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
274597304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2746cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2747cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2748cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2749cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
275097304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2751cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2752cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2753cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2754d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2755f4259b30SLisandro Dalcin                                        NULL,
2756f4259b30SLisandro Dalcin                                        NULL,
2757f4259b30SLisandro Dalcin                                        NULL,
2758f4259b30SLisandro Dalcin                                        NULL,
275926cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2760f4259b30SLisandro Dalcin                                        NULL,
2761f4259b30SLisandro Dalcin                                        NULL,
2762a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2763f4259b30SLisandro Dalcin                                        NULL,
2764d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2765f4259b30SLisandro Dalcin                                        NULL,
2766f4259b30SLisandro Dalcin                                        NULL,
2767f4259b30SLisandro Dalcin                                        NULL,
2768f4259b30SLisandro Dalcin                                        NULL,
2769d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27707dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2771cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2772cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2773cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2774d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2775cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27767d68702bSBarry Smith                                        MatShift_MPIAIJ,
277799e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2778564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
277973a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27808a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27818a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2782f4259b30SLisandro Dalcin                                        NULL,
2783f4259b30SLisandro Dalcin                                        NULL,
278493dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2785f4259b30SLisandro Dalcin                                        NULL,
2786cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
278772e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2788f4259b30SLisandro Dalcin                                        NULL,
27897dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2790e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2791e03a110bSBarry Smith                                        MatView_MPIAIJ,
2792f4259b30SLisandro Dalcin                                        NULL,
2793f4259b30SLisandro Dalcin                                        NULL,
2794f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2795f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2796f4259b30SLisandro Dalcin                                        NULL,
2797f4259b30SLisandro Dalcin                                        NULL,
2798f4259b30SLisandro Dalcin                                        NULL,
2799d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2800c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2801f4259b30SLisandro Dalcin                                        NULL,
2802f4259b30SLisandro Dalcin                                        NULL,
2803f4259b30SLisandro Dalcin                                        NULL,
2804f4259b30SLisandro Dalcin                                        NULL,
28053acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2806b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2807f4259b30SLisandro Dalcin                                        NULL,
2808f4259b30SLisandro Dalcin                                        NULL,
2809f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2810f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2811f4259b30SLisandro Dalcin                                        NULL,
2812f4259b30SLisandro Dalcin                                        NULL,
28135bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
28146cff0a6bSPierre Jolivet                                        NULL,
2815f4259b30SLisandro Dalcin                                        NULL,
2816f4259b30SLisandro Dalcin                                        NULL,
2817f4259b30SLisandro Dalcin                                        NULL,
2818f4259b30SLisandro Dalcin                                        NULL,
2819f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2820f4259b30SLisandro Dalcin                                        NULL,
282126be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2822f4259b30SLisandro Dalcin                                        NULL,
2823f4259b30SLisandro Dalcin                                        NULL,
2824cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2825f4259b30SLisandro Dalcin                                        NULL,
2826f4259b30SLisandro Dalcin                                        NULL,
2827f4259b30SLisandro Dalcin                                        NULL,
2828b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28294222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2830f4259b30SLisandro Dalcin                                        NULL,
2831f4259b30SLisandro Dalcin                                        NULL,
28322fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2833f4259b30SLisandro Dalcin                                        NULL,
2834d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
283599cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
283669db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2837f4259b30SLisandro Dalcin                                        NULL,
2838f4259b30SLisandro Dalcin                                        NULL,
2839f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2840f4259b30SLisandro Dalcin                                        NULL,
28415494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2842f4259b30SLisandro Dalcin                                        NULL,
28433b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2844d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2845f4259b30SLisandro Dalcin                                        NULL,
2846c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2847f4259b30SLisandro Dalcin                                        NULL,
2848f4259b30SLisandro Dalcin                                        NULL,
2849b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2850f4259b30SLisandro Dalcin                                        NULL,
2851f4259b30SLisandro Dalcin                                        NULL,
2852f4259b30SLisandro Dalcin                                        NULL,
2853b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2854f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2855a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2856bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2857a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28587dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2859f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2860f4259b30SLisandro Dalcin                                        NULL,
2861f4259b30SLisandro Dalcin                                        NULL,
2862187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2863f4259b30SLisandro Dalcin                                        NULL,
2864f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2865f4259b30SLisandro Dalcin                                        NULL,
2866f4259b30SLisandro Dalcin                                        NULL,
2867f4259b30SLisandro Dalcin                                        NULL,
2868f4259b30SLisandro Dalcin                                        NULL,
286946533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2870f4259b30SLisandro Dalcin                                        NULL,
2871f4259b30SLisandro Dalcin                                        NULL,
28729c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2873a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28744222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2875f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2876f4259b30SLisandro Dalcin                                        NULL,
287772833a62Smarkadams4                                        NULL,
287872833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28792d776b49SBarry Smith                                        NULL,
2880dec0b466SHong Zhang                                        /*150*/ NULL,
2881eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
28824cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIAIJ,
288342ce410bSJunchao Zhang                                        NULL,
288442ce410bSJunchao Zhang                                        NULL,
2885fe1fc275SAlexander                                        /*155*/ NULL,
2886fe1fc275SAlexander                                        MatCopyHashToXAIJ_MPI_Hash};
288736ce4990SBarry Smith 
2888ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2889d71ae5a4SJacob Faibussowitsch {
28902e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28912e8a6d31SBarry Smith 
28922e8a6d31SBarry Smith   PetscFunctionBegin;
28939566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28949566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28962e8a6d31SBarry Smith }
28972e8a6d31SBarry Smith 
2898ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2899d71ae5a4SJacob Faibussowitsch {
29002e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
29012e8a6d31SBarry Smith 
29022e8a6d31SBarry Smith   PetscFunctionBegin;
29039566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
29049566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
29053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29062e8a6d31SBarry Smith }
29078a729477SBarry Smith 
2908d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2909d71ae5a4SJacob Faibussowitsch {
2910ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
29115d2a9ed1SStefano Zampini   PetscMPIInt size;
2912a23d5eceSKris Buschelman 
2913a23d5eceSKris Buschelman   PetscFunctionBegin;
2914ad79cf63SBarry Smith   if (B->hash_active) {
2915aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2916ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2917ad79cf63SBarry Smith   }
29189566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29199566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2920899cda47SBarry Smith 
2921cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2922eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2923cb7b82ddSBarry Smith #else
29249566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2925cb7b82ddSBarry Smith #endif
29269566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29279566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29289566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2929cb7b82ddSBarry Smith 
29309566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2931c508b908SBarry Smith 
2932c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29339566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29349566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29359566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29369566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29379566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2938c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2939cb7b82ddSBarry Smith 
2940c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2941ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29429566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29439566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29449566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29459566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2946c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2947899cda47SBarry Smith 
29489566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29499566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2950526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2951cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
295215001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2954a23d5eceSKris Buschelman }
2955a23d5eceSKris Buschelman 
2956ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2957d71ae5a4SJacob Faibussowitsch {
2958ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2959846b4da1SFande Kong 
2960846b4da1SFande Kong   PetscFunctionBegin;
2961846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29629566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29639566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2964eb14dd14SAlex Lindsay   if (B->assembled || B->was_assembled) PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE));
2965eb14dd14SAlex Lindsay   else {
2966846b4da1SFande Kong #if defined(PETSC_USE_CTABLE)
2967eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&b->colmap));
2968846b4da1SFande Kong #else
29699566063dSJacob Faibussowitsch     PetscCall(PetscFree(b->colmap));
2970846b4da1SFande Kong #endif
29719566063dSJacob Faibussowitsch     PetscCall(PetscFree(b->garray));
29729566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&b->lvec));
2973eb14dd14SAlex Lindsay   }
29749566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2975846b4da1SFande Kong 
29769566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->A));
29779566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->B));
2978846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2979846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2980846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
29813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2982846b4da1SFande Kong }
2983846b4da1SFande Kong 
2984d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2985d71ae5a4SJacob Faibussowitsch {
2986d6dfbf8fSBarry Smith   Mat         mat;
2987416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2988d6dfbf8fSBarry Smith 
29893a40ed3dSBarry Smith   PetscFunctionBegin;
2990f4259b30SLisandro Dalcin   *newmat = NULL;
29919566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29929566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29939566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29949566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2995273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2996e1b6402fSHong Zhang 
2997d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2998501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2999e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
3000d6dfbf8fSBarry Smith 
300117699dbbSLois Curfman McInnes   a->size         = oldmat->size;
300217699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
3003e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
3004e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
3005501880eeSStefano Zampini   a->rowindices   = NULL;
3006501880eeSStefano Zampini   a->rowvalues    = NULL;
3007bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
3008d6dfbf8fSBarry Smith 
30099566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
30109566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3011420957c1SBarry Smith   if (matin->hash_active) {
3012420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3013420957c1SBarry Smith   } else {
3014420957c1SBarry Smith     mat->preallocated = matin->preallocated;
30152ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
3016aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3017eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
3018b1fc9764SSatish Balay #else
30199566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
30209566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
3021b1fc9764SSatish Balay #endif
3022501880eeSStefano Zampini     } else a->colmap = NULL;
30233f41c07dSBarry Smith     if (oldmat->garray) {
3024b1d57f15SBarry Smith       PetscInt len;
3025d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30269566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30279566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3028501880eeSStefano Zampini     } else a->garray = NULL;
3029d6dfbf8fSBarry Smith 
30300de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30310de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30320de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3033aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3034cff58d65SJunchao Zhang     if (oldmat->Mvctx) {
3035cff58d65SJunchao Zhang       a->Mvctx = oldmat->Mvctx;
3036cff58d65SJunchao Zhang       PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx));
3037cff58d65SJunchao Zhang     }
30389566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30399566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3040420957c1SBarry Smith   }
30419566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30428a729477SBarry Smith   *newmat = mat;
30433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30448a729477SBarry Smith }
3045416022c9SBarry Smith 
3046d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3047d71ae5a4SJacob Faibussowitsch {
304852f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
304952f91c60SVaclav Hapla 
305052f91c60SVaclav Hapla   PetscFunctionBegin;
305152f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
305252f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3053c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30549566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30559566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30569566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
305752f91c60SVaclav Hapla   if (isbinary) {
30589566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
305952f91c60SVaclav Hapla   } else if (ishdf5) {
306052f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30619566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
306252f91c60SVaclav Hapla #else
306352f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
306452f91c60SVaclav Hapla #endif
306552f91c60SVaclav Hapla   } else {
306698921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
306752f91c60SVaclav Hapla   }
30683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
306952f91c60SVaclav Hapla }
307052f91c60SVaclav Hapla 
3071d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3072d71ae5a4SJacob Faibussowitsch {
30733ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30743ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30753ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30768fb81238SShri Abhyankar 
30778fb81238SShri Abhyankar   PetscFunctionBegin;
30789566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30798fb81238SShri Abhyankar 
30803ea6fe3dSLisandro Dalcin   /* read in matrix header */
30819566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
308208401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30839371c9d4SSatish Balay   M  = header[1];
30849371c9d4SSatish Balay   N  = header[2];
30859371c9d4SSatish Balay   nz = header[3];
308608401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
308708401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
308808401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
308908ea439dSMark F. Adams 
30903ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30919566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30923ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30933ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30943ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30978fb81238SShri Abhyankar 
30983ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30999566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3100aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
31018fb81238SShri Abhyankar 
31023ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
31039566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
31049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
31059566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
31069371c9d4SSatish Balay   rowidxs[0] = 0;
31079371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
31081690c2aeSBarry Smith   if (nz != PETSC_INT_MAX) {
3109462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
311008401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
311138b83642SBarry Smith   }
311238b83642SBarry Smith 
31133ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
31149566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
31159566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
31169566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
31173ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
31189566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
31199566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
31209566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
31213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31228fb81238SShri Abhyankar }
31238fb81238SShri Abhyankar 
31243782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3125ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3126d71ae5a4SJacob Faibussowitsch {
31274aa3045dSJed Brown   IS          iscol_local;
3128c5e4d11fSDmitry Karpeev   PetscBool   isstride;
3129c5e4d11fSDmitry Karpeev   PetscMPIInt lisstride = 0, gisstride;
31303782ecc7SHong Zhang 
31313782ecc7SHong Zhang   PetscFunctionBegin;
31323782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31339566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31343782ecc7SHong Zhang 
3135c5e4d11fSDmitry Karpeev   if (isstride) {
3136c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31379566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31389566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31399566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
3140c5e4d11fSDmitry Karpeev     if (mstart == start && mlen - mstart == len) lisstride = 1;
3141c5e4d11fSDmitry Karpeev   }
31423782ecc7SHong Zhang 
3143462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3144c5e4d11fSDmitry Karpeev   if (gisstride) {
3145c5e4d11fSDmitry Karpeev     PetscInt N;
31469566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31479566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31489566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31499566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3150c5e4d11fSDmitry Karpeev   } else {
3151c5bfad50SMark F. Adams     PetscInt cbs;
31529566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31539566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31549566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3155b79d0421SJed Brown   }
31563782ecc7SHong Zhang 
31573782ecc7SHong Zhang   *isseq = iscol_local;
31583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3159c5e4d11fSDmitry Karpeev }
31608d2139bdSHong Zhang 
3161ddfdf956SHong Zhang /*
31629c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31639c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3164ddfdf956SHong Zhang 
3165ddfdf956SHong Zhang  Input Parameters:
316627430b45SBarry Smith +   mat - matrix
316727430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31689c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
316927430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3170ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
317127430b45SBarry Smith 
317227430b45SBarry Smith  Output Parameters:
317327430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
317427430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
317527430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
317627430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3177ddfdf956SHong Zhang  */
3178835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[])
3179d71ae5a4SJacob Faibussowitsch {
3180040216a4SHong Zhang   Vec             x, cmap;
3181040216a4SHong Zhang   const PetscInt *is_idx;
3182040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31839c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3184040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3185040216a4SHong Zhang   Mat             B    = a->B;
3186040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3187a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31888b3fa1f7SHong Zhang   MPI_Comm        comm;
31893a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31903782ecc7SHong Zhang 
31913782ecc7SHong Zhang   PetscFunctionBegin;
31929566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31939566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31948b3fa1f7SHong Zhang 
3195ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31969566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31979566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31989566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31999566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
32000a351717SHong Zhang 
32019c988bcaSHong Zhang   /* Get start indices */
32029566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3203ddfdf956SHong Zhang   isstart -= ncols;
32049566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3205040216a4SHong Zhang 
32069566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
32079566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
32089566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
32099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3210ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
32118b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3212ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
32139c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
32148b3fa1f7SHong Zhang   }
32159566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
32169566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
32179566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
32188b3fa1f7SHong Zhang 
32199c988bcaSHong Zhang   /* Get iscol_d */
32209566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
32219566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
32229566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3223feb78a15SHong Zhang 
32249c988bcaSHong Zhang   /* Get isrow_d */
32259566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3226feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32289566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32299c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32309566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3231feb78a15SHong Zhang 
32329566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32339566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32349566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3235feb78a15SHong Zhang 
32369c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32379566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32389566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3239ddfdf956SHong Zhang 
32409566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
324107250d77SHong Zhang 
32429566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32439566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
324464efcef9SHong Zhang 
32459c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3246ddfdf956SHong Zhang   /* off-process column indices */
32479c988bcaSHong Zhang   count = 0;
32489566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32499566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3250feb78a15SHong Zhang 
32519566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32529566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32538b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3254f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32559c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32561c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32571c645242SHong Zhang       count++;
32588b3fa1f7SHong Zhang     }
32598b3fa1f7SHong Zhang   }
32609566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32619566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
326207250d77SHong Zhang 
32639566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3264b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3265b6d9b4e0SHong Zhang 
32669566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32679c988bcaSHong Zhang   *garray = cmap1;
32689c988bcaSHong Zhang 
32699566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32709566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32719566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3273040216a4SHong Zhang }
3274040216a4SHong Zhang 
3275b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3276d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3277d71ae5a4SJacob Faibussowitsch {
3278b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32791fd43edeSHong Zhang   Mat         M = NULL;
32803b00a383SHong Zhang   MPI_Comm    comm;
3281b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32823b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3283b20e2604SHong Zhang   PetscInt    n;
32843b00a383SHong Zhang 
32853b00a383SHong Zhang   PetscFunctionBegin;
32869566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32873b00a383SHong Zhang 
32883b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3289b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32909566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
329128b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32923b00a383SHong Zhang 
32939566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
329428b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32953b00a383SHong Zhang 
32969566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
329728b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32983b00a383SHong Zhang 
3299b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3300b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
33019566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
33029566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
330348a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
33049566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
33059566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
33063b00a383SHong Zhang 
33073b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
3308835f2295SStefano Zampini     PetscInt *garray;
3309b20e2604SHong Zhang     PetscInt  BsubN;
33103b00a383SHong Zhang 
3311b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
33129566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
33133b00a383SHong Zhang 
3314b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
33159566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
33169566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
33173b00a383SHong Zhang 
33189c988bcaSHong Zhang     /* Create submatrix M */
33199566063dSJacob Faibussowitsch     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M));
33203b00a383SHong Zhang 
3321b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3322b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33237cfce09cSHong Zhang 
33249566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3325b20e2604SHong Zhang     n = asub->B->cmap->N;
3326b20e2604SHong Zhang     if (BsubN > n) {
3327c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33287cfce09cSHong Zhang       const PetscInt *idx;
33299c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33309566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33317cfce09cSHong Zhang 
33329566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33337cfce09cSHong Zhang       j = 0;
33349566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3335b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33367cfce09cSHong Zhang         if (j >= BsubN) break;
33379c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33387cfce09cSHong Zhang 
33399c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33407cfce09cSHong Zhang           idx_new[i] = idx[j++];
334198921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33427cfce09cSHong Zhang       }
33439566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33447cfce09cSHong Zhang 
33459566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33469566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33477cfce09cSHong Zhang 
3348b20e2604SHong Zhang     } else if (BsubN < n) {
334998921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3350b20e2604SHong Zhang     }
33517cfce09cSHong Zhang 
33529566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3353b20e2604SHong Zhang     *submat = M;
33543b00a383SHong Zhang 
3355e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33569566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33579566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33583b00a383SHong Zhang 
33599566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33609566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33613b00a383SHong Zhang 
33629566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33639566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33643b00a383SHong Zhang   }
33653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33663b00a383SHong Zhang }
33673b00a383SHong Zhang 
3368d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3369d71ae5a4SJacob Faibussowitsch {
33701358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33713782ecc7SHong Zhang   PetscInt  csize;
337218e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33734a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33743782ecc7SHong Zhang   MPI_Comm  comm;
33753782ecc7SHong Zhang 
33763782ecc7SHong Zhang   PetscFunctionBegin;
3377bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3378a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33798f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33809566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3381d5761cdaSHong Zhang     if (isrow_d) {
3382d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3383d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3384d5761cdaSHong Zhang     } else {
33859566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3386d5761cdaSHong Zhang       if (iscol_local) {
3387d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3388d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3389d5761cdaSHong Zhang       }
3390d5761cdaSHong Zhang     }
33918f69fa7bSHong Zhang   } else {
3392e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
339318e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33949566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33953782ecc7SHong Zhang     if (!n) {
339618e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33973782ecc7SHong Zhang     } else {
33989566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33999566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3400ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
34018f69fa7bSHong Zhang     }
34023782ecc7SHong Zhang 
3403e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
340418e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
34059566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
340618e627e3SHong Zhang     if (!n) {
340718e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
340818e627e3SHong Zhang     } else {
34099566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
34109566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
341118e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
341218e627e3SHong Zhang     }
341318e627e3SHong Zhang 
34149566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3415462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
341618e627e3SHong Zhang     sameRowDist = tsameDist[0];
341718e627e3SHong Zhang   }
341818e627e3SHong Zhang 
341918e627e3SHong Zhang   if (sameRowDist) {
3420b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
34213b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
34229566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34233ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3424b20e2604SHong Zhang     } else { /* sameRowDist */
34253b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34261358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34271358a193SHong Zhang         PetscBool sorted;
34289566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34299566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34309566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
343108401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34321358a193SHong Zhang 
34339566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34341358a193SHong Zhang         if (sorted) {
34351358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34369566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34373ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34383782ecc7SHong Zhang         }
34391358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
344048c0d076SHong Zhang         IS iscol_sub;
34419566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
344248c0d076SHong Zhang         if (iscol_sub) {
34439566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34443ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
344548c0d076SHong Zhang         }
34461358a193SHong Zhang       }
34471358a193SHong Zhang     }
34481358a193SHong Zhang   }
34493782ecc7SHong Zhang 
3450bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34513782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34529566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
345328b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34543782ecc7SHong Zhang   } else {
345548a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34561358a193SHong Zhang   }
34573782ecc7SHong Zhang 
34589566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34599566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34608f69fa7bSHong Zhang 
3461b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34629566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34639566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3464b79d0421SJed Brown   }
34653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34664aa3045dSJed Brown }
34674aa3045dSJed Brown 
3468feb78a15SHong Zhang /*@C
346911a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3470feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3471feb78a15SHong Zhang 
3472d083f849SBarry Smith   Collective
3473feb78a15SHong Zhang 
3474feb78a15SHong Zhang   Input Parameters:
3475feb78a15SHong Zhang + comm   - MPI communicator
3476feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3477b20e2604SHong Zhang . B      - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine
34782ef1f0ffSBarry Smith - garray - global index of `B` columns
3479feb78a15SHong Zhang 
3480feb78a15SHong Zhang   Output Parameter:
34812ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
348227430b45SBarry Smith 
3483feb78a15SHong Zhang   Level: advanced
3484feb78a15SHong Zhang 
3485feb78a15SHong Zhang   Notes:
348611a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
348711a5261eSBarry Smith 
34882ef1f0ffSBarry Smith   `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore.
3489feb78a15SHong Zhang 
34901cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3491feb78a15SHong Zhang @*/
3492d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat)
3493d71ae5a4SJacob Faibussowitsch {
3494feb78a15SHong Zhang   Mat_MPIAIJ        *maij;
3495e489de8fSHong Zhang   Mat_SeqAIJ        *b  = (Mat_SeqAIJ *)B->data, *bnew;
3496a5348796SHong Zhang   PetscInt          *oi = b->i, *oj = b->j, i, nz, col;
3497ce496241SStefano Zampini   const PetscScalar *oa;
3498e489de8fSHong Zhang   Mat                Bnew;
3499feb78a15SHong Zhang   PetscInt           m, n, N;
35004ab4d6f4SRichard Tran Mills   MatType            mpi_mat_type;
3501feb78a15SHong Zhang 
3502feb78a15SHong Zhang   PetscFunctionBegin;
35039566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
35049566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
350508401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
350637a5e0faSPierre Jolivet   PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3507b6d9b4e0SHong Zhang   /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */
350808401ef6SPierre Jolivet   /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */
3509feb78a15SHong Zhang 
3510e489de8fSHong Zhang   /* Get global columns of mat */
3511462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm));
3512feb78a15SHong Zhang 
35139566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N));
35144ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
35154ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
35164ab4d6f4SRichard Tran Mills   PetscCall(MatSetType(*mat, mpi_mat_type));
35174ab4d6f4SRichard Tran Mills 
351837a5e0faSPierre Jolivet   if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs));
3519feb78a15SHong Zhang   maij = (Mat_MPIAIJ *)(*mat)->data;
3520feb78a15SHong Zhang 
3521feb78a15SHong Zhang   (*mat)->preallocated = PETSC_TRUE;
3522feb78a15SHong Zhang 
35239566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
35249566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
3525feb78a15SHong Zhang 
3526e489de8fSHong Zhang   /* Set A as diagonal portion of *mat */
3527feb78a15SHong Zhang   maij->A = A;
3528feb78a15SHong Zhang 
3529a5348796SHong Zhang   nz = oi[m];
3530a5348796SHong Zhang   for (i = 0; i < nz; i++) {
3531a5348796SHong Zhang     col   = oj[i];
3532a5348796SHong Zhang     oj[i] = garray[col];
3533feb78a15SHong Zhang   }
3534feb78a15SHong Zhang 
3535e489de8fSHong Zhang   /* Set Bnew as off-diagonal portion of *mat */
35369566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &oa));
35379566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew));
35389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &oa));
3539e489de8fSHong Zhang   bnew        = (Mat_SeqAIJ *)Bnew->data;
3540e489de8fSHong Zhang   bnew->maxnz = b->maxnz; /* allocated nonzeros of B */
3541e489de8fSHong Zhang   maij->B     = Bnew;
3542d5761cdaSHong Zhang 
354308401ef6SPierre Jolivet   PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N);
3544d5761cdaSHong Zhang 
3545d5761cdaSHong Zhang   b->free_a  = PETSC_FALSE;
3546d5761cdaSHong Zhang   b->free_ij = PETSC_FALSE;
35479566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&B));
3548d5761cdaSHong Zhang 
3549e489de8fSHong Zhang   bnew->free_a  = PETSC_TRUE;
3550e489de8fSHong Zhang   bnew->free_ij = PETSC_TRUE;
3551feb78a15SHong Zhang 
3552a5348796SHong Zhang   /* condense columns of maij->B */
35539566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
35549566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
35559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
35569566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
35579566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3559feb78a15SHong Zhang }
3560feb78a15SHong Zhang 
3561ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35624aa3045dSJed Brown 
3563d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3564d71ae5a4SJacob Faibussowitsch {
356598b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
356685f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
356798b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35681fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
356998b658c4SHong Zhang   MatScalar      *aa;
357000e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3571a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
357298b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
357398b658c4SHong Zhang   IS              iscol_sub, iscmap;
357498b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
357518e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3576a31a438cSHong Zhang   MPI_Comm        comm;
35777e2c5f70SBarry Smith 
3578a0ff6018SBarry Smith   PetscFunctionBegin;
35799566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3580d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35819566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
358228b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35839566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3584d5761cdaSHong Zhang 
35859566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
358628b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3587d5761cdaSHong Zhang 
35889566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
358928b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3590d5761cdaSHong Zhang 
35919566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3592d5761cdaSHong Zhang 
3593d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35943b00a383SHong Zhang     PetscBool flg;
35953b00a383SHong Zhang 
35969566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35979566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3598bcae8d28SHong Zhang 
35993b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3600366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
36019566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3602366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3603462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3604366a327dSHong Zhang     if (allcolumns) {
3605366a327dSHong Zhang       iscol_sub = iscol_local;
36069566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
36079566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3608366a327dSHong Zhang 
36093b00a383SHong Zhang     } else {
36101358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3611244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
36129566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
36139566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
36149566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
36158d2139bdSHong Zhang       count = 0;
3616a31a438cSHong Zhang       k     = 0;
3617a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3618a31a438cSHong Zhang         j = is_idx[i];
3619a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3620a31a438cSHong Zhang           /* diagonal part of mat */
36218d2139bdSHong Zhang           idx[count]     = j;
3622366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36234a3daf6eSHong Zhang         } else if (Bn) {
3624a31a438cSHong Zhang           /* off-diagonal part of mat */
3625a31a438cSHong Zhang           if (j == garray[k]) {
36268d2139bdSHong Zhang             idx[count]     = j;
3627a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3628a31a438cSHong Zhang           } else if (j > garray[k]) {
3629a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3630a31a438cSHong Zhang             if (j == garray[k]) {
3631a31a438cSHong Zhang               idx[count]     = j;
3632a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36338d2139bdSHong Zhang             }
36348d2139bdSHong Zhang           }
36358d2139bdSHong Zhang         }
36368d2139bdSHong Zhang       }
36379566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36388d2139bdSHong Zhang 
36399566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36409566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36419566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3642b6d9b4e0SHong Zhang 
36439566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3644a31a438cSHong Zhang     }
36458b3fa1f7SHong Zhang 
36463b00a383SHong Zhang     /* (3) Create sequential Msub */
36479566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3648d5761cdaSHong Zhang   }
36498d2139bdSHong Zhang 
36509566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
365157508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Msub->data;
365298b658c4SHong Zhang   ii  = aij->i;
36539566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3654a0ff6018SBarry Smith 
3655a0ff6018SBarry Smith   /*
3656a0ff6018SBarry Smith       m - number of local rows
3657a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3658a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3659a0ff6018SBarry Smith   */
36609566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
366198b658c4SHong Zhang 
36623b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36633b00a383SHong Zhang     /* (4) Create parallel newmat */
366498b658c4SHong Zhang     PetscMPIInt rank, size;
3665bcae8d28SHong Zhang     PetscInt    csize;
366698b658c4SHong Zhang 
36679566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36689566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
366900e6dbe6SBarry Smith 
3670a0ff6018SBarry Smith     /*
367100e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
367200e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3673a0ff6018SBarry Smith     */
367400e6dbe6SBarry Smith 
367500e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36769566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36776a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36789566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3679a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3680e2c4fddaSBarry Smith         nlocal = m;
36816a6a5d1dSBarry Smith       } else {
3682a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3683ab50ec6bSBarry Smith       }
3684ab50ec6bSBarry Smith     } else {
36856a6a5d1dSBarry Smith       nlocal = csize;
36866a6a5d1dSBarry Smith     }
36879566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
368800e6dbe6SBarry Smith     rstart = rend - nlocal;
3689aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
369000e6dbe6SBarry Smith 
369100e6dbe6SBarry Smith     /* next, compute all the lengths */
369298b658c4SHong Zhang     jj = aij->j;
36939566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
369400e6dbe6SBarry Smith     olens = dlens + m;
369500e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
369600e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
369700e6dbe6SBarry Smith       olen = 0;
369800e6dbe6SBarry Smith       dlen = 0;
369900e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
370015b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
370100e6dbe6SBarry Smith         else dlen++;
370200e6dbe6SBarry Smith         jj++;
370300e6dbe6SBarry Smith       }
370400e6dbe6SBarry Smith       olens[i] = olen;
370500e6dbe6SBarry Smith       dlens[i] = dlen;
370600e6dbe6SBarry Smith     }
3707b6d9b4e0SHong Zhang 
37089566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
37099566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
371098b658c4SHong Zhang 
37119566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
37129566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
37139566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
37149566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
37159566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
37169566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3717d5761cdaSHong Zhang 
3718d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3719a0ff6018SBarry Smith     M = *newmat;
37209566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
372108401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
37229566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3723c48de900SBarry Smith     /*
3724c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3725c48de900SBarry Smith        rather than the slower MatSetValues().
3726c48de900SBarry Smith     */
3727c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3728c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3729a0ff6018SBarry Smith   }
3730548ecf4dSHong Zhang 
37313b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37339566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
373498b658c4SHong Zhang 
373598b658c4SHong Zhang   jj = aij->j;
37369566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3737a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3738a0ff6018SBarry Smith     row = rstart + i;
373900e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
374015b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37419566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37429371c9d4SSatish Balay     jj += nz;
37439371c9d4SSatish Balay     aa += nz;
3744a0ff6018SBarry Smith   }
37459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37469566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3747a0ff6018SBarry Smith 
37489566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37499566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3750fee21e36SBarry Smith 
37519566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
375298b658c4SHong Zhang 
375398b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3754fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37553b00a383SHong Zhang     *newmat = M;
3756f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37579566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
375898b658c4SHong Zhang 
3759f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37609566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
376198b658c4SHong Zhang 
3762f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37639566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3764bcae8d28SHong Zhang 
3765bcae8d28SHong Zhang     if (iscol_local) {
3766f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37679566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3768bcae8d28SHong Zhang     }
376998b658c4SHong Zhang   }
37703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3771a0ff6018SBarry Smith }
3772273d9f13SBarry Smith 
3773df40acb1SHong Zhang /*
3774df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3775df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3776df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3777df40acb1SHong Zhang 
377811a5261eSBarry Smith   This requires a sequential iscol with all indices.
3779df40acb1SHong Zhang */
3780d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3781d71ae5a4SJacob Faibussowitsch {
3782df40acb1SHong Zhang   PetscMPIInt rank, size;
3783df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3784df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3785df40acb1SHong Zhang   Mat         M, Mreuse;
378698b658c4SHong Zhang   MatScalar  *aa, *vwork;
3787df40acb1SHong Zhang   MPI_Comm    comm;
3788df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37890b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3790df40acb1SHong Zhang 
3791df40acb1SHong Zhang   PetscFunctionBegin;
37929566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37939566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37949566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3795df40acb1SHong Zhang 
37960b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37979566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37989566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37990b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3800462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
38010b27a90eSHong Zhang 
3802df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
38039566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
380428b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
38059566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3806df40acb1SHong Zhang   } else {
38079566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3808df40acb1SHong Zhang   }
3809df40acb1SHong Zhang 
3810df40acb1SHong Zhang   /*
3811df40acb1SHong Zhang       m - number of local rows
3812df40acb1SHong Zhang       n - number of columns (same on all processors)
3813df40acb1SHong Zhang       rstart - first row in new global matrix generated
3814df40acb1SHong Zhang   */
38159566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
38169566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3817df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
381857508eceSPierre Jolivet     aij = (Mat_SeqAIJ *)Mreuse->data;
3819df40acb1SHong Zhang     ii  = aij->i;
3820df40acb1SHong Zhang     jj  = aij->j;
3821df40acb1SHong Zhang 
3822df40acb1SHong Zhang     /*
3823df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3824df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3825df40acb1SHong Zhang     */
3826df40acb1SHong Zhang 
3827df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3828df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38299566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3830df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3831df40acb1SHong Zhang         nlocal = m;
3832df40acb1SHong Zhang       } else {
3833df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3834df40acb1SHong Zhang       }
3835df40acb1SHong Zhang     } else {
3836df40acb1SHong Zhang       nlocal = csize;
3837df40acb1SHong Zhang     }
38389566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3839df40acb1SHong Zhang     rstart = rend - nlocal;
3840aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3841df40acb1SHong Zhang 
3842df40acb1SHong Zhang     /* next, compute all the lengths */
38439566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3844df40acb1SHong Zhang     olens = dlens + m;
3845df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3846df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3847df40acb1SHong Zhang       olen = 0;
3848df40acb1SHong Zhang       dlen = 0;
3849df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3850df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3851df40acb1SHong Zhang         else dlen++;
3852df40acb1SHong Zhang         jj++;
3853df40acb1SHong Zhang       }
3854df40acb1SHong Zhang       olens[i] = olen;
3855df40acb1SHong Zhang       dlens[i] = dlen;
3856df40acb1SHong Zhang     }
38579566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38589566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38599566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38609566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38619566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38629566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3863df40acb1SHong Zhang   } else {
3864df40acb1SHong Zhang     PetscInt ml, nl;
3865df40acb1SHong Zhang 
3866df40acb1SHong Zhang     M = *newmat;
38679566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
386808401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38699566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3870df40acb1SHong Zhang     /*
3871df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3872df40acb1SHong Zhang        rather than the slower MatSetValues().
3873df40acb1SHong Zhang     */
3874df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3875df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3876df40acb1SHong Zhang   }
38779566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
387857508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Mreuse->data;
3879df40acb1SHong Zhang   ii  = aij->i;
3880df40acb1SHong Zhang   jj  = aij->j;
38812e5835c6SStefano Zampini 
38822e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38839566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3884df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3885df40acb1SHong Zhang     row   = rstart + i;
3886df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38879371c9d4SSatish Balay     cwork = jj;
38888e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38899371c9d4SSatish Balay     vwork = aa;
38908e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38919566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3892df40acb1SHong Zhang   }
38939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3894df40acb1SHong Zhang 
38959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38969566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3897df40acb1SHong Zhang   *newmat = M;
3898df40acb1SHong Zhang 
3899df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3900df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
39019566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
39029566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3903df40acb1SHong Zhang   }
39043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3905df40acb1SHong Zhang }
3906df40acb1SHong Zhang 
3907ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3908d71ae5a4SJacob Faibussowitsch {
39096a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
39109f0612e4SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart;
3911ccd8e176SBarry Smith   const PetscInt *JJ;
3912eeb24464SBarry Smith   PetscBool       nooffprocentries;
39136a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3914ccd8e176SBarry Smith 
3915ccd8e176SBarry Smith   PetscFunctionBegin;
39169566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
39179566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3918d0f46423SBarry Smith   m       = B->rmap->n;
3919d0f46423SBarry Smith   cstart  = B->cmap->rstart;
3920d0f46423SBarry Smith   cend    = B->cmap->rend;
3921d0f46423SBarry Smith   rstart  = B->rmap->rstart;
39229f0612e4SBarry Smith   irstart = Ii[0];
3923899cda47SBarry Smith 
39249566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3925ccd8e176SBarry Smith 
392676bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39278f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3928ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39299f0612e4SBarry Smith       JJ  = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
393008401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
393108401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
393208401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3933ecc77c7aSBarry Smith     }
393476bd3646SJed Brown   }
3935ecc77c7aSBarry Smith 
39368f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3937b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39389f0612e4SBarry Smith     JJ      = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
3939ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3940ccd8e176SBarry Smith     d       = 0;
39410daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39420daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3943ccd8e176SBarry Smith     }
3944ccd8e176SBarry Smith     d_nnz[i] = d;
3945ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3946ccd8e176SBarry Smith   }
39479566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39489566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3949ccd8e176SBarry Smith 
39508f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3951ccd8e176SBarry Smith     ii = i + rstart;
39529f0612e4SBarry Smith     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES));
3953ccd8e176SBarry Smith   }
3954eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3955eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39579566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3958eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3959ccd8e176SBarry Smith 
39606a3d2595SBarry Smith   /* count number of entries below block diagonal */
39616a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39626a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39636a3d2595SBarry Smith   Aij->ld = ld;
39646a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39656a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39666a3d2595SBarry Smith     j   = 0;
3967ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39686a3d2595SBarry Smith     ld[i] = j;
3969720a2405SPierre Jolivet     if (J) J += nnz;
39706a3d2595SBarry Smith   }
39716a3d2595SBarry Smith 
39729566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3974ccd8e176SBarry Smith }
3975ccd8e176SBarry Smith 
39761eea217eSSatish Balay /*@
397711a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3978ccd8e176SBarry Smith   (the default parallel PETSc format).
3979ccd8e176SBarry Smith 
3980d083f849SBarry Smith   Collective
3981ccd8e176SBarry Smith 
3982ccd8e176SBarry Smith   Input Parameters:
3983a1661176SMatthew Knepley + B - the matrix
3984d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
3985d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
3986ccd8e176SBarry Smith - v - optional values in the matrix
3987ccd8e176SBarry Smith 
3988ccd8e176SBarry Smith   Level: developer
3989ccd8e176SBarry Smith 
399012251496SSatish Balay   Notes:
39912ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39922ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
399311a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
399412251496SSatish Balay 
39952ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
399612251496SSatish Balay 
3997a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3998a4bd8bc0SBarry Smith 
3999a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
4000a4bd8bc0SBarry Smith 
4001a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
4002a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4003a4bd8bc0SBarry Smith 
400412251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
400512251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
4006c5e4d11fSDmitry Karpeev   as shown
400727430b45SBarry Smith .vb
400827430b45SBarry Smith         1 0 0
400927430b45SBarry Smith         2 0 3     P0
401027430b45SBarry Smith        -------
401127430b45SBarry Smith         4 5 6     P1
401227430b45SBarry Smith 
401327430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
401427430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
401527430b45SBarry Smith         j =  {0,0,2}  [size = 3]
401627430b45SBarry Smith         v =  {1,2,3}  [size = 3]
401727430b45SBarry Smith 
401827430b45SBarry Smith      Process1 [P1] rows_owned=[2]
401927430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
402027430b45SBarry Smith         j =  {0,1,2}  [size = 3]
402127430b45SBarry Smith         v =  {4,5,6}  [size = 3]
402227430b45SBarry Smith .ve
402312251496SSatish Balay 
4024fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4025a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4026ccd8e176SBarry Smith @*/
4027d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4028d71ae5a4SJacob Faibussowitsch {
4029ccd8e176SBarry Smith   PetscFunctionBegin;
4030cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4032ccd8e176SBarry Smith }
4033ccd8e176SBarry Smith 
40345d83a8b1SBarry Smith /*@
403511a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4036273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4037273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
403820f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4039273d9f13SBarry Smith 
4040d083f849SBarry Smith   Collective
4041273d9f13SBarry Smith 
4042273d9f13SBarry Smith   Input Parameters:
40431c4f3114SJed Brown + B     - the matrix
4044273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4045273d9f13SBarry Smith            (same value is used for all local rows)
4046273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4047273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40482ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4049273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40503287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40513287b5eaSJed Brown            the diagonal entry even if it is zero.
4052273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4053273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4054273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4055273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40562ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4057273d9f13SBarry Smith            structure. The size of this array is equal to the number
4058273d9f13SBarry Smith            of local rows, i.e 'm'.
4059273d9f13SBarry Smith 
40602920cce0SJacob Faibussowitsch   Example Usage:
406127430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
406227430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
406327430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
406427430b45SBarry Smith   as follows
406527430b45SBarry Smith 
406627430b45SBarry Smith .vb
406727430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
406827430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
406927430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
407027430b45SBarry Smith     -------------------------------------
407127430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
407227430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
407327430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
407427430b45SBarry Smith     -------------------------------------
407527430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
407627430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
407727430b45SBarry Smith .ve
407827430b45SBarry Smith 
407927430b45SBarry Smith   This can be represented as a collection of submatrices as
408027430b45SBarry Smith .vb
408127430b45SBarry Smith       A B C
408227430b45SBarry Smith       D E F
408327430b45SBarry Smith       G H I
408427430b45SBarry Smith .ve
408527430b45SBarry Smith 
408627430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
408727430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
408827430b45SBarry Smith 
408927430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
409027430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
409127430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
409227430b45SBarry Smith 
409327430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
409427430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
409527430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
409627430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
409727430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
40985163b989SNuno Nobre   matrix, and [DF] as another `MATSEQAIJ` matrix.
409927430b45SBarry Smith 
410020f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
41015163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
41025163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
41035163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
41045163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
410520f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
410627430b45SBarry Smith .vb
410727430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
410827430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
410927430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
411027430b45SBarry Smith .ve
411120f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
411227430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
411327430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
411427430b45SBarry Smith   34 values.
411527430b45SBarry Smith 
411620f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
411727430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
411820f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
411927430b45SBarry Smith .vb
412027430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
412127430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
412227430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
412327430b45SBarry Smith .ve
412427430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
412527430b45SBarry Smith   hence pre-allocation is perfect.
412627430b45SBarry Smith 
412727430b45SBarry Smith   Level: intermediate
412827430b45SBarry Smith 
412927430b45SBarry Smith   Notes:
413049a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
413149a6f317SBarry Smith 
413227430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41330598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4134651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4135273d9f13SBarry Smith 
4136273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4137273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4138273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4139273d9f13SBarry Smith 
4140273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4141a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4142a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4143a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4144a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4145a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4146a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4147a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4148a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4149273d9f13SBarry Smith 
41502ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4151273d9f13SBarry Smith 
415227430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4153aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
415427430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4155aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4156aa95bbe8SBarry Smith 
41571cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4158a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4159273d9f13SBarry Smith @*/
4160d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4161d71ae5a4SJacob Faibussowitsch {
4162273d9f13SBarry Smith   PetscFunctionBegin;
41636ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41646ba663aaSJed Brown   PetscValidType(B, 1);
4165cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4167273d9f13SBarry Smith }
4168273d9f13SBarry Smith 
416958d36128SBarry Smith /*@
417011a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41718f8f2f0dSBarry Smith   CSR format for the local rows.
41722fb0ec9aSBarry Smith 
4173d083f849SBarry Smith   Collective
41742fb0ec9aSBarry Smith 
41752fb0ec9aSBarry Smith   Input Parameters:
41762fb0ec9aSBarry Smith + comm - MPI communicator
417711a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41782fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4179d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4180d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4181d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4182d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41835693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41845693b835SJunchao Zhang . j    - global column indices
4185f1f2ae84SBarry Smith - a    - optional matrix values
41862fb0ec9aSBarry Smith 
41872fb0ec9aSBarry Smith   Output Parameter:
41882fb0ec9aSBarry Smith . mat - the matrix
418903bfb495SBarry Smith 
41902fb0ec9aSBarry Smith   Level: intermediate
41912fb0ec9aSBarry Smith 
41922fb0ec9aSBarry Smith   Notes:
41932ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
4194d4c8cc39SPierre Jolivet   thus you CANNOT change the matrix entries by changing the values of `a[]` after you have
4195d4c8cc39SPierre Jolivet   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41962fb0ec9aSBarry Smith 
41972ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
419812251496SSatish Balay 
41995693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4200a4bd8bc0SBarry Smith 
42015693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4202a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4203a4bd8bc0SBarry Smith 
420412251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
4205d4c8cc39SPierre Jolivet   row-major ordering, i.e., for the following matrix, the input data expected is
4206c5e4d11fSDmitry Karpeev   as shown
42072ef1f0ffSBarry Smith .vb
42082ef1f0ffSBarry Smith         1 0 0
42092ef1f0ffSBarry Smith         2 0 3     P0
42102ef1f0ffSBarry Smith        -------
42112ef1f0ffSBarry Smith         4 5 6     P1
42128f8f2f0dSBarry Smith 
42132ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
42142ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
42152ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
42162ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
42172fb0ec9aSBarry Smith 
42182ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
42192ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
42202ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
42212ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
42222ef1f0ffSBarry Smith .ve
42232ef1f0ffSBarry Smith 
4224d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
42255693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42262fb0ec9aSBarry Smith @*/
4227d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4228d71ae5a4SJacob Faibussowitsch {
42292fb0ec9aSBarry Smith   PetscFunctionBegin;
423008401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
423108401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42329566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42339566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42349566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42359566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42369566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42382fb0ec9aSBarry Smith }
42392fb0ec9aSBarry Smith 
42408f8f2f0dSBarry Smith /*@
424111a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42422ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42432ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42446a3d2595SBarry Smith 
42456a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42468f8f2f0dSBarry Smith 
42478f8f2f0dSBarry Smith   Collective
42488f8f2f0dSBarry Smith 
42498f8f2f0dSBarry Smith   Input Parameters:
42508f8f2f0dSBarry Smith + mat - the matrix
425111a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42528f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
425311a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42548f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
425511a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
425611a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42578f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42588f8f2f0dSBarry Smith . J   - column indices
42598f8f2f0dSBarry Smith - v   - matrix values
42608f8f2f0dSBarry Smith 
42612ef1f0ffSBarry Smith   Level: deprecated
42628f8f2f0dSBarry Smith 
42631cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4264a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42658f8f2f0dSBarry Smith @*/
4266d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4267d71ae5a4SJacob Faibussowitsch {
42686a3d2595SBarry Smith   PetscInt        nnz, i;
42698f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42708f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4271fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4272fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42738f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42746a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42756a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42768f8f2f0dSBarry Smith 
42778f8f2f0dSBarry Smith   PetscFunctionBegin;
4278aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
427908401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
428008401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
428108401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42828f8f2f0dSBarry Smith 
42839566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42849566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42858f8f2f0dSBarry Smith 
42868f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42874c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42884c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42894c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42904c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42914c17f1ccSBarry Smith       }
42924c17f1ccSBarry Smith     }
42938f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42948f8f2f0dSBarry Smith     Iii = Ii[i];
42958f8f2f0dSBarry Smith     ldi = ld[i];
42968f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42979566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42989566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42999566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43008f8f2f0dSBarry Smith     ad += md;
43018f8f2f0dSBarry Smith     ao += nnz - md;
43028f8f2f0dSBarry Smith   }
43038f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
43048f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43059566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43069566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43079566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43089566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43099566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43109566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43119566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43128f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
43133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43148f8f2f0dSBarry Smith }
43158f8f2f0dSBarry Smith 
43166a3d2595SBarry Smith /*@
431711a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
43186a3d2595SBarry Smith 
43196a3d2595SBarry Smith   Collective
43206a3d2595SBarry Smith 
43216a3d2595SBarry Smith   Input Parameters:
43226a3d2595SBarry Smith + mat - the matrix
43236a3d2595SBarry Smith - v   - matrix values, stored by row
43246a3d2595SBarry Smith 
43256a3d2595SBarry Smith   Level: intermediate
43266a3d2595SBarry Smith 
4327a4bd8bc0SBarry Smith   Notes:
43286a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43296a3d2595SBarry Smith 
4330a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4331a4bd8bc0SBarry Smith 
43321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4333a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43346a3d2595SBarry Smith @*/
4335d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4336d71ae5a4SJacob Faibussowitsch {
43376a3d2595SBarry Smith   PetscInt        nnz, i, m;
43386a3d2595SBarry Smith   PetscBool       nooffprocentries;
43396a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43406a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43416a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43426a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43436a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43446a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43456a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43466a3d2595SBarry Smith 
43476a3d2595SBarry Smith   PetscFunctionBegin;
43486a3d2595SBarry Smith   m = mat->rmap->n;
43496a3d2595SBarry Smith 
43506a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43516a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43526a3d2595SBarry Smith   Iii = 0;
43536a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43546a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43556a3d2595SBarry Smith     ldi = ld[i];
43566a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43576a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43586a3d2595SBarry Smith     ad += md;
4359810441c8SPierre Jolivet     if (ao) {
4360810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4361810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43626a3d2595SBarry Smith       ao += nnz - md;
4363810441c8SPierre Jolivet     }
43646a3d2595SBarry Smith     Iii += nnz;
43656a3d2595SBarry Smith   }
43666a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43676a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43686a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43696a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43706a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43716a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43726a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43736a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43746a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43756a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43776a3d2595SBarry Smith }
43786a3d2595SBarry Smith 
43795d83a8b1SBarry Smith /*@
438011a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4381273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4382273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43832ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4384273d9f13SBarry Smith 
4385d083f849SBarry Smith   Collective
4386273d9f13SBarry Smith 
4387273d9f13SBarry Smith   Input Parameters:
4388273d9f13SBarry Smith + comm  - MPI communicator
438911a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4390273d9f13SBarry Smith           This value should be the same as the local size used in creating the
4391273d9f13SBarry Smith           y vector for the matrix-vector product y = Ax.
4392273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
439345f401ebSJose E. Roman           x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4394273d9f13SBarry Smith           calculated if N is given) For square matrices n is almost always m.
439511a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
439611a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4397273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4398273d9f13SBarry Smith           (same value is used for all local rows)
4399273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4400273d9f13SBarry Smith           DIAGONAL portion of the local submatrix (possibly different for each row)
44012ef1f0ffSBarry Smith           or `NULL`, if `d_nz` is used to specify the nonzero structure.
4402273d9f13SBarry Smith           The size of this array is equal to the number of local rows, i.e 'm'.
4403273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4404273d9f13SBarry Smith           submatrix (same value is used for all local rows).
4405273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4406273d9f13SBarry Smith           OFF-DIAGONAL portion of the local submatrix (possibly different for
44072ef1f0ffSBarry Smith           each row) or `NULL`, if `o_nz` is used to specify the nonzero
4408273d9f13SBarry Smith           structure. The size of this array is equal to the number
4409273d9f13SBarry Smith           of local rows, i.e 'm'.
4410273d9f13SBarry Smith 
4411273d9f13SBarry Smith   Output Parameter:
4412273d9f13SBarry Smith . A - the matrix
4413273d9f13SBarry Smith 
441427430b45SBarry Smith   Options Database Keys:
441527430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
441627430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
441727430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
4418727bdf9bSBarry Smith                                       See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter`
4419727bdf9bSBarry Smith                                       to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
442027430b45SBarry Smith 
44212ef1f0ffSBarry Smith   Level: intermediate
44222ef1f0ffSBarry Smith 
442327430b45SBarry Smith   Notes:
442477433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4425f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
442611a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4427175b88e8SBarry Smith 
442849a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
442949a6f317SBarry Smith 
44302ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44312ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4432273d9f13SBarry Smith   storage requirements for this matrix.
4433273d9f13SBarry Smith 
443411a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4435273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4436273d9f13SBarry Smith   that argument.
4437273d9f13SBarry Smith 
4438727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
4439727bdf9bSBarry Smith   `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
4440727bdf9bSBarry Smith 
4441273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4442273d9f13SBarry Smith   (possibly both).
4443273d9f13SBarry Smith 
444433a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
4445727bdf9bSBarry Smith   first `m0` rows belong to process 0, the next `m1` rows belong to
4446727bdf9bSBarry Smith   process 1, the next `m2` rows belong to process 2, etc., where
4447727bdf9bSBarry Smith   `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores
444833a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4449273d9f13SBarry Smith 
445033a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
445133a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4452df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
445333a7c187SSatish Balay 
445433a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
445533a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
445633a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
445733a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
445833a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
445933a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
44600b4b7b1cSBarry Smith   illustrates this concept. The two matrices, the DIAGONAL portion and
44610b4b7b1cSBarry Smith   the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices.
446233a7c187SSatish Balay 
446333a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
446433a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
446533a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
446633a7c187SSatish Balay   local matrix (a rectangular submatrix).
4467273d9f13SBarry Smith 
44682ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4469273d9f13SBarry Smith 
447097d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44712ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4472da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4473da57b5cdSKarl Rupp .vb
44742ef1f0ffSBarry Smith   MatCreate(..., &A);
44752ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44762ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44772ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4478da57b5cdSKarl Rupp .ve
447997d05335SKris Buschelman 
4480273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4481273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4482273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4483273d9f13SBarry Smith 
44842920cce0SJacob Faibussowitsch   Example Usage:
4485273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4486273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4487273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4488efc377ccSKarl Rupp   as follows
4489273d9f13SBarry Smith 
4490273d9f13SBarry Smith .vb
4491273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4492273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4493273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4494273d9f13SBarry Smith     -------------------------------------
4495273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4496273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4497273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4498273d9f13SBarry Smith     -------------------------------------
4499273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4500273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4501273d9f13SBarry Smith .ve
4502273d9f13SBarry Smith 
4503da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4504273d9f13SBarry Smith 
4505273d9f13SBarry Smith .vb
4506273d9f13SBarry Smith       A B C
4507273d9f13SBarry Smith       D E F
4508273d9f13SBarry Smith       G H I
4509273d9f13SBarry Smith .ve
4510273d9f13SBarry Smith 
4511273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4512273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4513273d9f13SBarry Smith 
4514273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4515273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4516273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4517273d9f13SBarry Smith 
4518273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4519273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4520273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4521273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
452227430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
45235163b989SNuno Nobre   matrix, and [DF] as another SeqAIJ matrix.
4524273d9f13SBarry Smith 
45252ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45265163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
45275163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
45285163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
45295163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45302ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4531273d9f13SBarry Smith .vb
453227430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
453327430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
453427430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4535273d9f13SBarry Smith .ve
45362ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4537273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4538273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4539273d9f13SBarry Smith   34 values.
4540273d9f13SBarry Smith 
45412ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4542a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4543da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4544273d9f13SBarry Smith .vb
454527430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
454627430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
454727430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4548273d9f13SBarry Smith .ve
4549273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4550273d9f13SBarry Smith   hence pre-allocation is perfect.
4551273d9f13SBarry Smith 
45521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4553727bdf9bSBarry Smith           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`,
4554727bdf9bSBarry Smith           `MatGetOwnershipRangesColumn()`, `PetscLayout`
4555273d9f13SBarry Smith @*/
4556d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4557d71ae5a4SJacob Faibussowitsch {
4558b1d57f15SBarry Smith   PetscMPIInt size;
4559273d9f13SBarry Smith 
4560273d9f13SBarry Smith   PetscFunctionBegin;
45619566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45629566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4564273d9f13SBarry Smith   if (size > 1) {
45659566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45669566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4567273d9f13SBarry Smith   } else {
45689566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45699566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4570273d9f13SBarry Smith   }
45713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4572273d9f13SBarry Smith }
4573195d93cdSBarry Smith 
45740b98dbb4SBarry Smith /*MC
45750b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix
45760b98dbb4SBarry Smith 
45770b98dbb4SBarry Smith     Synopsis:
45780b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45790b98dbb4SBarry Smith 
45800b98dbb4SBarry Smith     Not Collective
45810b98dbb4SBarry Smith 
45820b98dbb4SBarry Smith     Input Parameter:
45830b98dbb4SBarry Smith .   A - the `MATMPIAIJ` matrix
45840b98dbb4SBarry Smith 
45850b98dbb4SBarry Smith     Output Parameters:
45860b98dbb4SBarry Smith +   Ad - the diagonal portion of the matrix
45874cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45882ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45890b98dbb4SBarry Smith -   ierr - error code
45900b98dbb4SBarry Smith 
45910b98dbb4SBarry Smith      Level: advanced
45920b98dbb4SBarry Smith 
45930b98dbb4SBarry Smith     Note:
45940b98dbb4SBarry Smith     Use  `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45950b98dbb4SBarry Smith 
45961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()`
45970b98dbb4SBarry Smith M*/
45980b98dbb4SBarry Smith 
45990b98dbb4SBarry Smith /*MC
46000b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap`
46010b98dbb4SBarry Smith 
46020b98dbb4SBarry Smith     Synopsis:
46030b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
46040b98dbb4SBarry Smith 
46050b98dbb4SBarry Smith     Not Collective
46060b98dbb4SBarry Smith 
46070b98dbb4SBarry Smith     Input Parameters:
46080b98dbb4SBarry Smith +   A - the `MATMPIAIJ` matrix
46090b98dbb4SBarry Smith .   Ad - the diagonal portion of the matrix
46104cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
46112ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
46120b98dbb4SBarry Smith -   ierr - error code
46130b98dbb4SBarry Smith 
46140b98dbb4SBarry Smith      Level: advanced
46150b98dbb4SBarry Smith 
46161cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()`
46170b98dbb4SBarry Smith M*/
46180b98dbb4SBarry Smith 
4619127ca0efSMatthew Knepley /*@C
46200ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4621127ca0efSMatthew Knepley 
46222ef1f0ffSBarry Smith   Not Collective
4623127ca0efSMatthew Knepley 
4624127ca0efSMatthew Knepley   Input Parameter:
462511a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4626127ca0efSMatthew Knepley 
4627127ca0efSMatthew Knepley   Output Parameters:
462811a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
462911a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
46302ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4631127ca0efSMatthew Knepley 
46320ab4885dSBarry Smith   Level: intermediate
46330ab4885dSBarry Smith 
463411a5261eSBarry Smith   Note:
46352ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
46362ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
46372ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4638127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4639127ca0efSMatthew Knepley 
4640fe59aa6dSJacob Faibussowitsch   Fortran Notes:
46410ab4885dSBarry Smith   `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()`
4642127ca0efSMatthew Knepley 
4643fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4644127ca0efSMatthew Knepley @*/
4645d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4646d71ae5a4SJacob Faibussowitsch {
4647195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
464804cf37c7SBarry Smith   PetscBool   flg;
4649b1d57f15SBarry Smith 
4650195d93cdSBarry Smith   PetscFunctionBegin;
46519566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
465228b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
465321e72a00SBarry Smith   if (Ad) *Ad = a->A;
465421e72a00SBarry Smith   if (Ao) *Ao = a->B;
465521e72a00SBarry Smith   if (colmap) *colmap = a->garray;
46563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4657195d93cdSBarry Smith }
4658a2243be0SBarry Smith 
4659d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4660d71ae5a4SJacob Faibussowitsch {
4661110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
46629b8102ccSHong Zhang   PetscInt    *indx;
4663110bb6e1SHong Zhang   PetscScalar *values;
4664421ddf4dSJunchao Zhang   MatType      rootType;
46659b8102ccSHong Zhang 
46669b8102ccSHong Zhang   PetscFunctionBegin;
46679566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4668110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4669110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4670110bb6e1SHong Zhang 
467148a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4672a22543b6SHong Zhang     /* Check sum(n) = N */
4673462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
467408401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4675a22543b6SHong Zhang 
46769566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46779b8102ccSHong Zhang     rstart -= m;
46789b8102ccSHong Zhang 
4679d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46809b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46819566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46829566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46839566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46849b8102ccSHong Zhang     }
46859b8102ccSHong Zhang 
46869566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46879566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46889566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46899566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46909566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46919566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46929566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46939566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4694d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46959566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46969b8102ccSHong Zhang   }
46979b8102ccSHong Zhang 
4698110bb6e1SHong Zhang   /* numeric phase */
46999566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
47009b8102ccSHong Zhang   for (i = 0; i < m; i++) {
47019566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
47029b8102ccSHong Zhang     Ii = i + rstart;
47039566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
47049566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
47059b8102ccSHong Zhang   }
47069566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
47079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
47083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4709c5d6d63eSBarry Smith }
4710c5d6d63eSBarry Smith 
471149abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data)
4712d71ae5a4SJacob Faibussowitsch {
471349abdd8aSBarry Smith   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data;
471451a7d1a8SHong Zhang 
471551a7d1a8SHong Zhang   PetscFunctionBegin;
47163ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
47179566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
47189566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
47199566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
47209566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
47219566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
47229566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
47239566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
47249566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
47259566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
47269566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
47279566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
47289566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
47299566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
47309566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
47313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
473251a7d1a8SHong Zhang }
473351a7d1a8SHong Zhang 
4734c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4735c6db04a5SJed Brown #include <petscbt.h>
47364ebed01fSBarry Smith 
4737d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4738d71ae5a4SJacob Faibussowitsch {
4739ce94432eSBarry Smith   MPI_Comm             comm;
474055d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4741b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
47426497c311SBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m;
47436497c311SBarry Smith   PetscMPIInt          proc, k;
4744b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
47456497c311SBarry Smith   PetscInt             anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4746b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
474755d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
474855d1abb9SHong Zhang   MPI_Status          *status;
4749fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4750dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
475155d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4752776b82aeSLisandro Dalcin   PetscContainer       container;
475355d1abb9SHong Zhang 
475455d1abb9SHong Zhang   PetscFunctionBegin;
47559566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
47569566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
47573c2c1871SHong Zhang 
47589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47599566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
476055d1abb9SHong Zhang 
47619566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
476228b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
47639566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
47649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4765fff043a9SJunchao Zhang   aa = a_a;
4766bf0cc555SLisandro Dalcin 
476755d1abb9SHong Zhang   bi     = merge->bi;
476855d1abb9SHong Zhang   bj     = merge->bj;
476955d1abb9SHong Zhang   buf_ri = merge->buf_ri;
477055d1abb9SHong Zhang   buf_rj = merge->buf_rj;
477155d1abb9SHong Zhang 
47729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47737a2fc3feSBarry Smith   owners = merge->rowmap->range;
477455d1abb9SHong Zhang   len_s  = merge->len_s;
477555d1abb9SHong Zhang 
477655d1abb9SHong Zhang   /* send and recv matrix values */
47779566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47789566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
477955d1abb9SHong Zhang 
47809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
478155d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
478255d1abb9SHong Zhang     if (!len_s[proc]) continue;
478355d1abb9SHong Zhang     i = owners[proc];
47846497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
478555d1abb9SHong Zhang     k++;
478655d1abb9SHong Zhang   }
478755d1abb9SHong Zhang 
47889566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47899566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47909566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
479155d1abb9SHong Zhang 
47929566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47939566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
479455d1abb9SHong Zhang 
479555d1abb9SHong Zhang   /* insert mat values of mpimat */
47969566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47979566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
479855d1abb9SHong Zhang 
479955d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
480055d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4801f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
480255d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4803a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
480455d1abb9SHong Zhang   }
480555d1abb9SHong Zhang 
480655d1abb9SHong Zhang   /* set values of ba */
48077a2fc3feSBarry Smith   m = merge->rowmap->n;
480855d1abb9SHong Zhang   for (i = 0; i < m; i++) {
480955d1abb9SHong Zhang     arow = owners[rank] + i;
481055d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
481155d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
48129566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
481355d1abb9SHong Zhang 
481455d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
481555d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
481655d1abb9SHong Zhang     aj     = a->j + ai[arow];
4817fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
481855d1abb9SHong Zhang     nextaj = 0;
481955d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
482055d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
482155d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
482255d1abb9SHong Zhang       }
482355d1abb9SHong Zhang     }
482455d1abb9SHong Zhang 
482555d1abb9SHong Zhang     /* add received vals into ba */
482655d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
482755d1abb9SHong Zhang       /* i-th row */
482855d1abb9SHong Zhang       if (i == *nextrow[k]) {
482955d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4830f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4831f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
483255d1abb9SHong Zhang         nextaj = 0;
483355d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
483455d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
483555d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
483655d1abb9SHong Zhang           }
483755d1abb9SHong Zhang         }
48389371c9d4SSatish Balay         nextrow[k]++;
48399371c9d4SSatish Balay         nextai[k]++;
484055d1abb9SHong Zhang       }
484155d1abb9SHong Zhang     }
48429566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
484355d1abb9SHong Zhang   }
48449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
48459566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
48469566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
484755d1abb9SHong Zhang 
48489566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
48499566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
48509566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
48519566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
48529566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
48533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
485455d1abb9SHong Zhang }
485538f152feSBarry Smith 
4856d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4857d71ae5a4SJacob Faibussowitsch {
485855a3bba9SHong Zhang   Mat                  B_mpi;
4859c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4860b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4861b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4862d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
48636497c311SBarry Smith   PetscInt             len, *dnz, *onz, bs, cbs;
4864c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4865b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
486655d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
486758cb9c82SHong Zhang   MPI_Status          *status;
48680298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4869be0fcf8dSHong Zhang   PetscBT              lnkbt;
487051a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4871776b82aeSLisandro Dalcin   PetscContainer       container;
487202c68681SHong Zhang 
4873e5f2cdd8SHong Zhang   PetscFunctionBegin;
48749566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48753c2c1871SHong Zhang 
487638f152feSBarry Smith   /* make sure it is a PETSc comm */
48779566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48789566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
488055d1abb9SHong Zhang 
48819566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48829566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4883e5f2cdd8SHong Zhang 
48846abd8857SHong Zhang   /* determine row ownership */
48859566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48869566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48879566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48889566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
489255d1abb9SHong Zhang 
48937a2fc3feSBarry Smith   m      = merge->rowmap->n;
48947a2fc3feSBarry Smith   owners = merge->rowmap->range;
48956abd8857SHong Zhang 
48966abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48973e06a4e6SHong Zhang   len_s = merge->len_s;
489851a7d1a8SHong Zhang 
48992257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4900c2234fe3SHong Zhang   merge->nsend = 0;
49016497c311SBarry Smith   for (PetscMPIInt proc = 0; proc < size; proc++) {
49022257cef7SHong Zhang     len_si[proc] = 0;
49033e06a4e6SHong Zhang     if (proc == rank) {
49046abd8857SHong Zhang       len_s[proc] = 0;
49053e06a4e6SHong Zhang     } else {
49066497c311SBarry Smith       PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc]));
49076497c311SBarry Smith       PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */
49083e06a4e6SHong Zhang     }
49093e06a4e6SHong Zhang     if (len_s[proc]) {
4910c2234fe3SHong Zhang       merge->nsend++;
49112257cef7SHong Zhang       nrows = 0;
49122257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
49132257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
49142257cef7SHong Zhang       }
49156497c311SBarry Smith       PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc]));
49162257cef7SHong Zhang       len += len_si[proc];
4917409913e3SHong Zhang     }
491858cb9c82SHong Zhang   }
4919409913e3SHong Zhang 
49202257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
49219566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
49229566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4923671beff6SHong Zhang 
49243e06a4e6SHong Zhang   /* post the Irecv of j-structure */
49259566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
49269566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
492702c68681SHong Zhang 
49283e06a4e6SHong Zhang   /* post the Isend of j-structure */
49299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
49303e06a4e6SHong Zhang 
49316497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
4932409913e3SHong Zhang     if (!len_s[proc]) continue;
493302c68681SHong Zhang     i = owners[proc];
49346497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
493551a7d1a8SHong Zhang     k++;
493651a7d1a8SHong Zhang   }
493751a7d1a8SHong Zhang 
49383e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
49399566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
49409566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
494102c68681SHong Zhang 
494202c68681SHong Zhang   /* send and recv i-structure */
49439566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
49449566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
494502c68681SHong Zhang 
49469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
49473e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
49486497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
494902c68681SHong Zhang     if (!len_s[proc]) continue;
49503e06a4e6SHong Zhang     /* form outgoing message for i-structure:
49513e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
49523e06a4e6SHong Zhang                [1:nrows]:           row index (global)
49533e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
49543e06a4e6SHong Zhang     */
49552257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
49563e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
49573e06a4e6SHong Zhang     buf_si[0]   = nrows;
49583e06a4e6SHong Zhang     buf_si_i[0] = 0;
49593e06a4e6SHong Zhang     nrows       = 0;
49603e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
49613e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
49623e06a4e6SHong Zhang       if (anzi) {
49633e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
49643e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
49653e06a4e6SHong Zhang         nrows++;
49663e06a4e6SHong Zhang       }
49673e06a4e6SHong Zhang     }
49686497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
496902c68681SHong Zhang     k++;
49702257cef7SHong Zhang     buf_si += len_si[proc];
497102c68681SHong Zhang   }
49722257cef7SHong Zhang 
49739566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49749566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
497502c68681SHong Zhang 
49769566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
497748a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49783e06a4e6SHong Zhang 
49799566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49809566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49819566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49829566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49839566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49849566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49859566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
498658cb9c82SHong Zhang 
4987bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
498858cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49899566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
499058cb9c82SHong Zhang   bi[0] = 0;
499158cb9c82SHong Zhang 
4992be0fcf8dSHong Zhang   /* create and initialize a linked list */
4993be0fcf8dSHong Zhang   nlnk = N + 1;
49949566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
499558cb9c82SHong Zhang 
4996bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4997bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49989566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49992205254eSKarl Rupp 
500058cb9c82SHong Zhang   current_space = free_space;
500158cb9c82SHong Zhang 
5002bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
50039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
50041d79065fSBarry Smith 
50053e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
50062257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
50073e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
50083e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
5009a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
50103e06a4e6SHong Zhang   }
50112257cef7SHong Zhang 
5012d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
5013bcc1bcd5SHong Zhang   len = 0;
501458cb9c82SHong Zhang   for (i = 0; i < m; i++) {
501558cb9c82SHong Zhang     bnzi = 0;
501658cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
501758cb9c82SHong Zhang     arow = owners[rank] + i;
501858cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
501958cb9c82SHong Zhang     aj   = a->j + ai[arow];
50209566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
502158cb9c82SHong Zhang     bnzi += nlnk;
502258cb9c82SHong Zhang     /* add received col data into lnk */
502351a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
502455d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
50253e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
50263e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
50279566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
50283e06a4e6SHong Zhang         bnzi += nlnk;
50299371c9d4SSatish Balay         nextrow[k]++;
50309371c9d4SSatish Balay         nextai[k]++;
50313e06a4e6SHong Zhang       }
503258cb9c82SHong Zhang     }
5033bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
503458cb9c82SHong Zhang 
503558cb9c82SHong Zhang     /* if free space is not available, make more free space */
503648a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
503758cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
50389566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
50399566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
5040bcc1bcd5SHong Zhang 
504158cb9c82SHong Zhang     current_space->array += bnzi;
504258cb9c82SHong Zhang     current_space->local_used += bnzi;
504358cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
504458cb9c82SHong Zhang 
504558cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
504658cb9c82SHong Zhang   }
5047bcc1bcd5SHong Zhang 
50489566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
5049bcc1bcd5SHong Zhang 
50509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
50519566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
50529566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
5053409913e3SHong Zhang 
5054bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
50559566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
50569566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
505754b84b50SHong Zhang   if (n == PETSC_DECIDE) {
50589566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
505954b84b50SHong Zhang   } else {
50609566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
506154b84b50SHong Zhang   }
50629566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
50639566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
50649566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
5065d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
50669566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
506758cb9c82SHong Zhang 
506890431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
50696abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5070affca5deSHong Zhang   merge->bi        = bi;
5071affca5deSHong Zhang   merge->bj        = bj;
507202c68681SHong Zhang   merge->buf_ri    = buf_ri;
507302c68681SHong Zhang   merge->buf_rj    = buf_rj;
50740298fd71SBarry Smith   merge->coi       = NULL;
50750298fd71SBarry Smith   merge->coj       = NULL;
50760298fd71SBarry Smith   merge->owners_co = NULL;
5077affca5deSHong Zhang 
50789566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5079bf0cc555SLisandro Dalcin 
5080affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50819566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50829566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
508349abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50849566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50859566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5086affca5deSHong Zhang   *mpimat = B_mpi;
508738f152feSBarry Smith 
50889566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5090e5f2cdd8SHong Zhang }
509125616d81SHong Zhang 
5092cc4c1da9SBarry Smith /*@
509311a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5094d4036a1aSHong Zhang   matrices from each processor
5095d4036a1aSHong Zhang 
5096d083f849SBarry Smith   Collective
5097d4036a1aSHong Zhang 
5098d4036a1aSHong Zhang   Input Parameters:
5099d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5100d4036a1aSHong Zhang . seqmat - the input sequential matrices
510111a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
510211a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
510311a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5104d4036a1aSHong Zhang 
5105d4036a1aSHong Zhang   Output Parameter:
5106d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5107d4036a1aSHong Zhang 
5108d4036a1aSHong Zhang   Level: advanced
5109d4036a1aSHong Zhang 
511011a5261eSBarry Smith   Note:
5111d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5112d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
5113b6971eaeSBarry Smith   destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`.
51142ef1f0ffSBarry Smith 
51151cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5116d4036a1aSHong Zhang @*/
5117d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5118d71ae5a4SJacob Faibussowitsch {
51197e63b356SHong Zhang   PetscMPIInt size;
512055d1abb9SHong Zhang 
512155d1abb9SHong Zhang   PetscFunctionBegin;
51229566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
51237e63b356SHong Zhang   if (size == 1) {
51249566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
51257e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
51269566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
51277e63b356SHong Zhang     } else {
51289566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
51297e63b356SHong Zhang     }
51309566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51313ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
51327e63b356SHong Zhang   }
51339566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
513448a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
51359566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
51369566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
513855d1abb9SHong Zhang }
51394ebed01fSBarry Smith 
5140bc08b0f1SBarry Smith /*@
51412920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
51428a9c020eSBarry Smith 
51438a9c020eSBarry Smith   Not Collective
51448a9c020eSBarry Smith 
51452fe279fdSBarry Smith   Input Parameter:
514620f4b53cSBarry Smith . A - the matrix
51478a9c020eSBarry Smith 
51488a9c020eSBarry Smith   Output Parameter:
51498a9c020eSBarry Smith . A_loc - the local sequential matrix generated
51508a9c020eSBarry Smith 
51518a9c020eSBarry Smith   Level: developer
51528a9c020eSBarry Smith 
51538a9c020eSBarry Smith   Notes:
51542920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
51552920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
51562920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
51572920cce0SJacob Faibussowitsch 
515811a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51598a9c020eSBarry Smith 
51602920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
51612920cce0SJacob Faibussowitsch 
516211a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
51638a9c020eSBarry Smith 
51641cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
51658a9c020eSBarry Smith @*/
5166d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5167d71ae5a4SJacob Faibussowitsch {
51688a9c020eSBarry Smith   PetscBool mpi;
51698a9c020eSBarry Smith 
51708a9c020eSBarry Smith   PetscFunctionBegin;
51718a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51728a9c020eSBarry Smith   if (mpi) {
51738a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51748a9c020eSBarry Smith   } else {
51758a9c020eSBarry Smith     *A_loc = A;
51768a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51778a9c020eSBarry Smith   }
51783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51798a9c020eSBarry Smith }
51808a9c020eSBarry Smith 
51818a9c020eSBarry Smith /*@
51822920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
518325616d81SHong Zhang 
518432fba14fSHong Zhang   Not Collective
518525616d81SHong Zhang 
518625616d81SHong Zhang   Input Parameters:
518725616d81SHong Zhang + A     - the matrix
518811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
518925616d81SHong Zhang 
519025616d81SHong Zhang   Output Parameter:
519125616d81SHong Zhang . A_loc - the local sequential matrix generated
519225616d81SHong Zhang 
519325616d81SHong Zhang   Level: developer
519425616d81SHong Zhang 
519577c65a98SStefano Zampini   Notes:
51962920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51972920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51982920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51992920cce0SJacob Faibussowitsch 
520011a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
52018a9c020eSBarry Smith 
52022920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
52032920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
52042920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
52052920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
520677c65a98SStefano Zampini 
52071cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
520825616d81SHong Zhang @*/
5209d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5210d71ae5a4SJacob Faibussowitsch {
521101b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5212b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5213b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5214ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5215ce496241SStefano Zampini   PetscScalar       *ca, *cam;
521677c65a98SStefano Zampini   PetscMPIInt        size;
5217d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
52185a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
52198661ff28SBarry Smith   PetscBool          match;
522025616d81SHong Zhang 
522125616d81SHong Zhang   PetscFunctionBegin;
52229566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
522328b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
52249566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
522577c65a98SStefano Zampini   if (size == 1) {
522677c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52279566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
522877c65a98SStefano Zampini       *A_loc = mpimat->A;
522977c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52309566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
523177c65a98SStefano Zampini     }
52323ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
523377c65a98SStefano Zampini   }
523470a9ba44SHong Zhang 
52359566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5236f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5237f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
52389371c9d4SSatish Balay   ai = a->i;
52399371c9d4SSatish Balay   aj = a->j;
52409371c9d4SSatish Balay   bi = b->i;
52419371c9d4SSatish Balay   bj = b->j;
52429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
52439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5244ce496241SStefano Zampini   aa = aav;
5245ce496241SStefano Zampini   ba = bav;
524601b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
52479566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5248dea91ad1SHong Zhang     ci[0] = 0;
5249ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
52509566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
52519566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5252dea91ad1SHong Zhang     k = 0;
525301b7ae99SHong Zhang     for (i = 0; i < am; i++) {
52545a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52555a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
525601b7ae99SHong Zhang       /* off-diagonal portion of A */
52575a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52585a7d977cSHong Zhang         col = cmap[*bj];
52595a7d977cSHong Zhang         if (col >= cstart) break;
52609371c9d4SSatish Balay         cj[k] = col;
52619371c9d4SSatish Balay         bj++;
52625a7d977cSHong Zhang         ca[k++] = *ba++;
52635a7d977cSHong Zhang       }
52645a7d977cSHong Zhang       /* diagonal portion of A */
52655a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
52665a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
52675a7d977cSHong Zhang         ca[k++] = *aa++;
52685a7d977cSHong Zhang       }
52695a7d977cSHong Zhang       /* off-diagonal portion of A */
52705a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52715a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52725a7d977cSHong Zhang         ca[k++] = *ba++;
52735a7d977cSHong Zhang       }
527425616d81SHong Zhang     }
5275dea91ad1SHong Zhang     /* put together the new matrix */
52769566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5277dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5278dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5279dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5280e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5281e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5282dea91ad1SHong Zhang     mat->nonew   = 0;
52835a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52845a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5285fff043a9SJunchao Zhang     ci  = mat->i;
5286fff043a9SJunchao Zhang     cj  = mat->j;
52879566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52885a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52895a7d977cSHong Zhang       /* off-diagonal portion of A */
52905a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52915a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52925a7d977cSHong Zhang         col = cmap[*bj];
52935a7d977cSHong Zhang         if (col >= cstart) break;
52949371c9d4SSatish Balay         *cam++ = *ba++;
52959371c9d4SSatish Balay         bj++;
52965a7d977cSHong Zhang       }
52975a7d977cSHong Zhang       /* diagonal portion of A */
5298ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5299a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
53005a7d977cSHong Zhang       /* off-diagonal portion of A */
5301f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
53029371c9d4SSatish Balay         *cam++ = *ba++;
53039371c9d4SSatish Balay         bj++;
5304f33d1a9aSHong Zhang       }
53055a7d977cSHong Zhang     }
53069566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
530798921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53089566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
53099566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
53109566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
53113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
531225616d81SHong Zhang }
531325616d81SHong Zhang 
5314ed502f03SStefano Zampini /*@
531511a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
53164cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5317ed502f03SStefano Zampini 
5318ed502f03SStefano Zampini   Not Collective
5319ed502f03SStefano Zampini 
5320ed502f03SStefano Zampini   Input Parameters:
5321ed502f03SStefano Zampini + A     - the matrix
532211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5323ed502f03SStefano Zampini 
5324d8d19677SJose E. Roman   Output Parameters:
53252ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5326ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5327ed502f03SStefano Zampini 
5328ed502f03SStefano Zampini   Level: developer
5329ed502f03SStefano Zampini 
533011a5261eSBarry Smith   Note:
53312ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
53324cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5333ed502f03SStefano Zampini 
53341cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5335ed502f03SStefano Zampini @*/
5336d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5337d71ae5a4SJacob Faibussowitsch {
5338ed502f03SStefano Zampini   Mat             Ao, Ad;
5339ed502f03SStefano Zampini   const PetscInt *cmap;
5340ed502f03SStefano Zampini   PetscMPIInt     size;
5341ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5342ed502f03SStefano Zampini 
5343ed502f03SStefano Zampini   PetscFunctionBegin;
53449566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
53459566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5346ed502f03SStefano Zampini   if (size == 1) {
5347ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
53489566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5349ed502f03SStefano Zampini       *A_loc = Ad;
5350ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53519566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5352ed502f03SStefano Zampini     }
53539566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
53543ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5355ed502f03SStefano Zampini   }
53569566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
53579566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5358ed502f03SStefano Zampini   if (f) {
53599566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5360ed502f03SStefano Zampini   } else {
5361ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5362ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5363ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5364ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5365ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5366ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5367ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5368ed502f03SStefano Zampini     PetscScalar       *ca;
5369ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5370ed502f03SStefano Zampini 
53719566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53729566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53739566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53749566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5375ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5376ed502f03SStefano Zampini       PetscInt k;
53779566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53789566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53799566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5380ed502f03SStefano Zampini       ci[0] = 0;
5381ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5382ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5383ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5384ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5385ed502f03SStefano Zampini         /* diagonal portion of A */
5386ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5387ed502f03SStefano Zampini           cj[k] = *aj++;
5388ed502f03SStefano Zampini           ca[k] = *aa++;
5389ed502f03SStefano Zampini         }
5390ed502f03SStefano Zampini         /* off-diagonal portion of A */
5391ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5392ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5393ed502f03SStefano Zampini           ca[k] = *ba++;
5394ed502f03SStefano Zampini         }
5395ed502f03SStefano Zampini       }
5396ed502f03SStefano Zampini       /* put together the new matrix */
53979566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5398ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5399ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5400ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5401ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5402ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5403ed502f03SStefano Zampini       c->nonew   = 0;
54049566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5405ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
54069566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5407ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5408ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5409ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5410ed502f03SStefano Zampini         /* diagonal portion of A */
5411ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5412ed502f03SStefano Zampini         /* off-diagonal portion of A */
5413ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5414ed502f03SStefano Zampini       }
54159566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
541698921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
54179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
54189566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5419ed502f03SStefano Zampini     if (glob) {
5420ed502f03SStefano Zampini       PetscInt cst, *gidx;
5421ed502f03SStefano Zampini 
54229566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
54239566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5424ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5425ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
54269566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5427ed502f03SStefano Zampini     }
5428ed502f03SStefano Zampini   }
54299566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
54303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5431ed502f03SStefano Zampini }
5432ed502f03SStefano Zampini 
543332fba14fSHong Zhang /*@C
543411a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
543532fba14fSHong Zhang 
543632fba14fSHong Zhang   Not Collective
543732fba14fSHong Zhang 
543832fba14fSHong Zhang   Input Parameters:
543932fba14fSHong Zhang + A     - the matrix
544011a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
544120f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
544220f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
544332fba14fSHong Zhang 
544432fba14fSHong Zhang   Output Parameter:
544532fba14fSHong Zhang . A_loc - the local sequential matrix generated
544632fba14fSHong Zhang 
544732fba14fSHong Zhang   Level: developer
544832fba14fSHong Zhang 
54491cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
545032fba14fSHong Zhang @*/
5451d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5452d71ae5a4SJacob Faibussowitsch {
545332fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
545432fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
545532fba14fSHong Zhang   IS          isrowa, iscola;
545632fba14fSHong Zhang   Mat        *aloc;
54574a2b5492SBarry Smith   PetscBool   match;
545832fba14fSHong Zhang 
545932fba14fSHong Zhang   PetscFunctionBegin;
54609566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
546128b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
54629566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
546332fba14fSHong Zhang   if (!row) {
54649371c9d4SSatish Balay     start = A->rmap->rstart;
54659371c9d4SSatish Balay     end   = A->rmap->rend;
54669566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
546732fba14fSHong Zhang   } else {
546832fba14fSHong Zhang     isrowa = *row;
546932fba14fSHong Zhang   }
547032fba14fSHong Zhang   if (!col) {
5471d0f46423SBarry Smith     start = A->cmap->rstart;
547232fba14fSHong Zhang     cmap  = a->garray;
5473d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5474d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54759566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
547632fba14fSHong Zhang     ncols = 0;
547732fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
547832fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
547932fba14fSHong Zhang       else break;
548032fba14fSHong Zhang     }
548132fba14fSHong Zhang     imark = i;
548232fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
548332fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54849566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
548532fba14fSHong Zhang   } else {
548632fba14fSHong Zhang     iscola = *col;
548732fba14fSHong Zhang   }
548832fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54899566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
549032fba14fSHong Zhang     aloc[0] = *A_loc;
549132fba14fSHong Zhang   }
54929566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5493109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54949566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5495109e0772SStefano Zampini   }
549632fba14fSHong Zhang   *A_loc = aloc[0];
54979566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
549848a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
549948a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
55009566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
55013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
550232fba14fSHong Zhang }
550332fba14fSHong Zhang 
55045c65b9ecSFande Kong /*
55055c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
55065c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
55075c65b9ecSFande Kong  * on a global size.
55085c65b9ecSFande Kong  * */
5509ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5510d71ae5a4SJacob Faibussowitsch {
55115c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5512f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5513131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5514131c27b5Sprj-   PetscMPIInt            owner;
55155c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
55165c65b9ecSFande Kong   const PetscInt        *lrowindices;
55175c65b9ecSFande Kong   PetscSF                sf, osf;
55185c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
55195c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
55205c65b9ecSFande Kong   MPI_Comm               comm;
55215c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5522fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
55235c65b9ecSFande Kong 
55245c65b9ecSFande Kong   PetscFunctionBegin;
55259566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
55265c65b9ecSFande Kong   /* plocalsize is the number of roots
55275c65b9ecSFande Kong    * nrows is the number of leaves
55285c65b9ecSFande Kong    * */
55299566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
55309566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
55319566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
55329566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
55335c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55345c65b9ecSFande Kong     /* Find a remote index and an owner for a row
55355c65b9ecSFande Kong      * The row could be local or remote
55365c65b9ecSFande Kong      * */
553734bcad68SFande Kong     owner = 0;
553834bcad68SFande Kong     lidx  = 0;
55399566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
55405c65b9ecSFande Kong     iremote[i].index = lidx;
55415c65b9ecSFande Kong     iremote[i].rank  = owner;
55425c65b9ecSFande Kong   }
55435c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
55449566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5545f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
55465c65b9ecSFande Kong    * offsets
55475c65b9ecSFande Kong    * */
55489566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55499566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55509566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5551bc8e477aSFande Kong 
55529566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
55539566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
55549566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
55555c65b9ecSFande Kong   roffsets[0] = 0;
55565c65b9ecSFande Kong   roffsets[1] = 0;
55575c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
55584cf0e950SBarry Smith     /* diagonal */
55595c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
55604cf0e950SBarry Smith     /* off-diagonal */
55615c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
55625c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
55635c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
55645c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
55655c65b9ecSFande Kong   }
55669566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
55679566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
55685c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
55699566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55709566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55719566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55729566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55739566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55749566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55759566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55765c65b9ecSFande Kong   dntotalcols = 0;
55775c65b9ecSFande Kong   ontotalcols = 0;
5578bc8e477aSFande Kong   ncol        = 0;
55795c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55805c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5581bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55824cf0e950SBarry Smith     /* diagonal */
55835c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55844cf0e950SBarry Smith     /* off-diagonal */
55855c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55865c65b9ecSFande Kong   }
55875c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55885c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55895c65b9ecSFande Kong    * */
55909566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55919566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55929566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55935c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55944cf0e950SBarry Smith   /* diagonal */
55959566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55964cf0e950SBarry Smith   /* off-diagonal */
55979566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55984cf0e950SBarry Smith   /* diagonal */
55999566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
56004cf0e950SBarry Smith   /* off-diagonal */
56019566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
56025c65b9ecSFande Kong   dntotalcols = 0;
56035c65b9ecSFande Kong   ontotalcols = 0;
56045c65b9ecSFande Kong   ntotalcols  = 0;
56055c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
560634bcad68SFande Kong     owner = 0;
56079566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
56085c65b9ecSFande Kong     /* Set iremote for diag matrix */
56095c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
56105c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
56115c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
56125c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
56135c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
56145c65b9ecSFande Kong     }
56154cf0e950SBarry Smith     /* off-diagonal */
56165c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
56175c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
56185c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
56195c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
56205c65b9ecSFande Kong     }
56215c65b9ecSFande Kong   }
56229566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
56239566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
56249566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
56259566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
56265c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
56275c65b9ecSFande Kong    * Diag matrix
56285c65b9ecSFande Kong    * */
56299566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
56309566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
56319566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
56325c65b9ecSFande Kong 
56339566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
56344cf0e950SBarry Smith   /* off-diagonal */
56359566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
56369566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
56379566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
56389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56404cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
56419566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56429566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56439566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
56445c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
56455c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
56469566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56475c65b9ecSFande Kong   /* We want P_oth store global indices */
56489566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
56495c65b9ecSFande Kong   /* Use memory scalable approach */
56509566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
56519566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
56529566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56539566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56545c65b9ecSFande Kong   /* Convert back to local indices */
56555c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
56569566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56575c65b9ecSFande Kong   nout = 0;
56589566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
565908401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
56609566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
56615c65b9ecSFande Kong   /* Exchange values */
56629566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56639566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56665c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
56675c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
56689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
56699566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56705c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56719566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56729566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56739566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56749566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56765c65b9ecSFande Kong }
56775c65b9ecSFande Kong 
56785c65b9ecSFande Kong /*
56795c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56805c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56815c65b9ecSFande Kong  * */
5682d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5683d71ae5a4SJacob Faibussowitsch {
56845c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5685bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5686bc8e477aSFande Kong   IS          rows, map;
5687bc8e477aSFande Kong   PetscHMapI  hamp;
5688bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56895c65b9ecSFande Kong   MPI_Comm    comm;
56905c65b9ecSFande Kong   PetscSF     sf, osf;
5691bc8e477aSFande Kong   PetscBool   has;
56925c65b9ecSFande Kong 
56935c65b9ecSFande Kong   PetscFunctionBegin;
56949566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56959566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56965c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56975c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56985c65b9ecSFande Kong    * */
56995c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
57005c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5701eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
57029566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5703bc8e477aSFande Kong     count = 0;
5704bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5705bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5706bc8e477aSFande Kong       key = a->garray[i] / dof;
57079566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5708bc8e477aSFande Kong       if (!has) {
5709bc8e477aSFande Kong         mapping[i] = count;
57109566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5711bc8e477aSFande Kong       } else {
5712bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5713bc8e477aSFande Kong         mapping[i] = count - 1;
57145c65b9ecSFande Kong       }
5715bc8e477aSFande Kong     }
57169566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
57179566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5718eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
57199566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
57205c65b9ecSFande Kong     off = 0;
57219566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
57229566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
57239566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
57249566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
57255c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
57269566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
57279566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
57289566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
57299566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
57309566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
57315c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
57325c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
573335cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5734fff043a9SJunchao Zhang      */
5735fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5736fff043a9SJunchao Zhang 
57379566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
57389566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
573908401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
57405c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
57415c65b9ecSFande Kong     /* Update values in place */
57429566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
57439566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
57449566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57459566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57469566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57479566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57489566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
57499566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
57506718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
57519566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
57523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57535c65b9ecSFande Kong }
57545c65b9ecSFande Kong 
575525616d81SHong Zhang /*@C
575620f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
575725616d81SHong Zhang 
5758c3339decSBarry Smith   Collective
575925616d81SHong Zhang 
576025616d81SHong Zhang   Input Parameters:
576111a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
576211a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
576311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
576425616d81SHong Zhang 
5765f1a722f8SMatthew G. Knepley   Output Parameters:
576627430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
576727430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5768f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
576925616d81SHong Zhang 
577025616d81SHong Zhang   Level: developer
577125616d81SHong Zhang 
577220f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
577325616d81SHong Zhang @*/
5774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5775d71ae5a4SJacob Faibussowitsch {
5776899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5777b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
577825616d81SHong Zhang   IS          isrowb, iscolb;
57790298fd71SBarry Smith   Mat        *bseq = NULL;
578025616d81SHong Zhang 
578125616d81SHong Zhang   PetscFunctionBegin;
578220f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
578320f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57849566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
578525616d81SHong Zhang 
578625616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5787d0f46423SBarry Smith     start = A->cmap->rstart;
578825616d81SHong Zhang     cmap  = a->garray;
5789d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5790d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57919566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
579225616d81SHong Zhang     ncols = 0;
57930390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
579425616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
579525616d81SHong Zhang       else break;
579625616d81SHong Zhang     }
579725616d81SHong Zhang     imark = i;
57980390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57990390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
58009566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
58019566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
580225616d81SHong Zhang   } else {
580308401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
58049371c9d4SSatish Balay     isrowb = *rowb;
58059371c9d4SSatish Balay     iscolb = *colb;
58069566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
580725616d81SHong Zhang     bseq[0] = *B_seq;
580825616d81SHong Zhang   }
58099566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
581025616d81SHong Zhang   *B_seq = bseq[0];
58119566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
581225616d81SHong Zhang   if (!rowb) {
58139566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
581425616d81SHong Zhang   } else {
581525616d81SHong Zhang     *rowb = isrowb;
581625616d81SHong Zhang   }
581725616d81SHong Zhang   if (!colb) {
58189566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
581925616d81SHong Zhang   } else {
582025616d81SHong Zhang     *colb = iscolb;
582125616d81SHong Zhang   }
58229566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
58233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
582425616d81SHong Zhang }
5825429d309bSHong Zhang 
5826f8487c73SHong Zhang /*
582727430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
582801b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5829429d309bSHong Zhang 
5830c3339decSBarry Smith     Collective
5831429d309bSHong Zhang 
5832429d309bSHong Zhang    Input Parameters:
583327430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
583427430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5835429d309bSHong Zhang 
5836429d309bSHong Zhang    Output Parameter:
58370298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
58380298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
58390298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5840598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5841429d309bSHong Zhang 
584211a5261eSBarry Smith     Developer Note:
584311a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
58446eb45d04SBarry Smith      for this matrix. This is not desirable..
58456eb45d04SBarry Smith 
5846429d309bSHong Zhang     Level: developer
5847429d309bSHong Zhang 
5848f8487c73SHong Zhang */
58496497c311SBarry Smith 
5850d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5851d71ae5a4SJacob Faibussowitsch {
5852899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
58534b8d542aSHong Zhang   VecScatter         ctx;
5854ce94432eSBarry Smith   MPI_Comm           comm;
58553515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
58566497c311SBarry Smith   PetscMPIInt        nrecvs, nsends;
58573515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5858277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
58596497c311SBarry Smith   PetscInt           i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len;
5860277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5861ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5862ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5863429d309bSHong Zhang 
5864429d309bSHong Zhang   PetscFunctionBegin;
58659566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
58669566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5867a7c7454dSHong Zhang 
586820f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
586920f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58709566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58719566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5872a6b2eed2SHong Zhang 
5873ec07b8f8SHong Zhang   if (size == 1) {
5874ec07b8f8SHong Zhang     startsj_s = NULL;
5875ec07b8f8SHong Zhang     bufa_ptr  = NULL;
587652f7967eSHong Zhang     *B_oth    = NULL;
58773ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5878ec07b8f8SHong Zhang   }
5879ec07b8f8SHong Zhang 
5880fa83eaafSHong Zhang   ctx = a->Mvctx;
58814b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58824b8d542aSHong Zhang 
58839566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58843515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58859566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58869566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5888ddea5d60SJunchao Zhang   rwaits = reqs;
58898e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5890429d309bSHong Zhang 
5891b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5892429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5893a6b2eed2SHong Zhang     /* i-array */
5894a6b2eed2SHong Zhang     /*  post receives */
58959566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5896a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
589774268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5898e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58996497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5900429d309bSHong Zhang     }
5901a6b2eed2SHong Zhang 
5902a6b2eed2SHong Zhang     /* pack the outgoing message */
59039566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
59042205254eSKarl Rupp 
59052205254eSKarl Rupp     sstartsj[0] = 0;
59062205254eSKarl Rupp     rstartsj[0] = 0;
5907a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
59083515ee7fSJunchao Zhang     if (nsends) {
59093515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
59109566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
59113515ee7fSJunchao Zhang     }
5912a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
59133515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5914e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
591587025532SHong Zhang       for (j = 0; j < nrows; j++) {
5916d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5917e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
59189566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
59192205254eSKarl Rupp 
5920e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
59212205254eSKarl Rupp 
5922e42f35eeSHong Zhang           len += ncols;
59239566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5924e42f35eeSHong Zhang         }
5925a6b2eed2SHong Zhang         k++;
5926429d309bSHong Zhang       }
59276497c311SBarry Smith       PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
59282205254eSKarl Rupp 
5929dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5930429d309bSHong Zhang     }
593187025532SHong Zhang     /* recvs and sends of i-array are completed */
59329566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59339566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5934e42f35eeSHong Zhang 
5935a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
59369566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
59379566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5938a6b2eed2SHong Zhang 
593987025532SHong Zhang     /* create i-array of B_oth */
59409566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
59412205254eSKarl Rupp 
594287025532SHong Zhang     b_othi[0] = 0;
5943a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5944a6b2eed2SHong Zhang     k         = 0;
5945a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
59463515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
59473515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
594887025532SHong Zhang       for (j = 0; j < nrows; j++) {
594987025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
59509566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5951f91af8c7SBarry Smith         k++;
5952a6b2eed2SHong Zhang       }
5953dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5954a6b2eed2SHong Zhang     }
59559566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5956a6b2eed2SHong Zhang 
59576aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
59589566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
59599566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5960a6b2eed2SHong Zhang 
596187025532SHong Zhang     /* j-array */
5962a6b2eed2SHong Zhang     /*  post receives of j-array */
5963a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
596487025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59656497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5966a6b2eed2SHong Zhang     }
5967e42f35eeSHong Zhang 
5968e42f35eeSHong Zhang     /* pack the outgoing message j-array */
59693515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5970a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5971e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5972a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
597387025532SHong Zhang       for (j = 0; j < nrows; j++) {
5974d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5975e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59769566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5977ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59789566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5979e42f35eeSHong Zhang         }
598087025532SHong Zhang       }
59816497c311SBarry Smith       PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
598287025532SHong Zhang     }
598387025532SHong Zhang 
598487025532SHong Zhang     /* recvs and sends of j-array are completed */
59859566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
598687025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5987b7f45c76SHong Zhang     sstartsj = *startsj_s;
59881d79065fSBarry Smith     rstartsj = *startsj_r;
598987025532SHong Zhang     bufa     = *bufa_ptr;
59909566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5991ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
599287025532SHong Zhang 
599387025532SHong Zhang   /* a-array */
599487025532SHong Zhang   /*  post receives of a-array */
599587025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
599687025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59976497c311SBarry Smith     PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
599887025532SHong Zhang   }
5999e42f35eeSHong Zhang 
6000e42f35eeSHong Zhang   /* pack the outgoing message a-array */
60013515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
600287025532SHong Zhang   for (i = 0; i < nsends; i++) {
6003e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
600487025532SHong Zhang     bufA  = bufa + sstartsj[i];
600587025532SHong Zhang     for (j = 0; j < nrows; j++) {
6006d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
6007e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
60089566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
6009ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
60109566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
6011e42f35eeSHong Zhang       }
6012a6b2eed2SHong Zhang     }
60136497c311SBarry Smith     PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
6014a6b2eed2SHong Zhang   }
601587025532SHong Zhang   /* recvs and sends of a-array are completed */
60169566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
60179566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
6018a6b2eed2SHong Zhang 
601987025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
6020dd460d27SBarry Smith     Mat_SeqAIJ *b_oth;
6021dd460d27SBarry Smith 
6022a6b2eed2SHong Zhang     /* put together the new matrix */
60239566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
6024a6b2eed2SHong Zhang 
6025a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
6026a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
602787025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
6028e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
6029e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
603087025532SHong Zhang     b_oth->nonew   = 0;
6031a6b2eed2SHong Zhang 
60329566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
6033b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
60349566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
60359566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
6036dea91ad1SHong Zhang     } else {
6037b7f45c76SHong Zhang       *startsj_s = sstartsj;
60381d79065fSBarry Smith       *startsj_r = rstartsj;
603987025532SHong Zhang       *bufa_ptr  = bufa;
604087025532SHong Zhang     }
6041fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
60429566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
6043dea91ad1SHong Zhang   }
60443515ee7fSJunchao Zhang 
60459566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
60469566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
60479566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
60483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6049429d309bSHong Zhang }
6050ccd8e176SBarry Smith 
6051cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
6052cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
6053ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
60549779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
6055a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
6056191b95cbSRichard Tran Mills #endif
6057ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
6058cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
60595d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6060cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
60615d7652ecSHong Zhang #endif
6062d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
6063d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
6064d24d4204SJose E. Roman #endif
606563c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
606663c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
606763c07aadSStefano Zampini #endif
60683338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
60693338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60703338378cSStefano Zampini #endif
6071d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6072d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6073d5e393b6SSuyash Tandon #endif
60743d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60753d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60763d0639e7SStefano Zampini #endif
6077d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60784222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60794222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
608017667f90SBarry Smith 
6081fc4dec0aSBarry Smith /*
6082fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6083fc4dec0aSBarry Smith 
6084fc4dec0aSBarry Smith                n                       p                          p
60852da392ccSBarry Smith         [             ]       [             ]         [                 ]
60862da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60872da392ccSBarry Smith         [             ]       [             ]         [                 ]
6088fc4dec0aSBarry Smith 
6089fc4dec0aSBarry Smith */
6090d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6091d71ae5a4SJacob Faibussowitsch {
6092fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6093fc4dec0aSBarry Smith 
6094fc4dec0aSBarry Smith   PetscFunctionBegin;
60959566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60969566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
6097fb842aefSJose E. Roman   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct));
60989566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60999566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
61007fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
61019566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
61029566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
61033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6104fc4dec0aSBarry Smith }
6105fc4dec0aSBarry Smith 
6106d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6107d71ae5a4SJacob Faibussowitsch {
61086718818eSStefano Zampini   PetscBool cisdense;
6109fc4dec0aSBarry Smith 
6110fc4dec0aSBarry Smith   PetscFunctionBegin;
611108401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
61129566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
61139566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6114d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
611548a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
61169566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6117f75ecaa4SHong Zhang 
61184222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
61193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6120fc4dec0aSBarry Smith }
6121fc4dec0aSBarry Smith 
6122d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6123d71ae5a4SJacob Faibussowitsch {
61244222ddf1SHong Zhang   Mat_Product *product = C->product;
61254222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6126fc4dec0aSBarry Smith 
6127fc4dec0aSBarry Smith   PetscFunctionBegin;
612820f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
612920f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
61304222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
61314222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
61323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6133fc4dec0aSBarry Smith }
6134fc4dec0aSBarry Smith 
6135d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6136d71ae5a4SJacob Faibussowitsch {
61374222ddf1SHong Zhang   Mat_Product *product = C->product;
61384222ddf1SHong Zhang 
61394222ddf1SHong Zhang   PetscFunctionBegin;
614048a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
61413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61424222ddf1SHong Zhang }
6143394ed5ebSJunchao Zhang 
614427430b45SBarry Smith /*
614527430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6146394ed5ebSJunchao Zhang 
6147394ed5ebSJunchao Zhang   Input Parameters:
6148394ed5ebSJunchao Zhang 
6149651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6150651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6151394ed5ebSJunchao Zhang 
6152158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6153394ed5ebSJunchao Zhang 
6154394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6155394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6156394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6157394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6158394ed5ebSJunchao Zhang 
6159394ed5ebSJunchao Zhang     Similar for Set2.
6160394ed5ebSJunchao Zhang 
6161394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6162394ed5ebSJunchao Zhang 
6163158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6164394ed5ebSJunchao Zhang 
6165394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6166394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6167394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6168394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6169394ed5ebSJunchao Zhang */
6170d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6171d71ae5a4SJacob Faibussowitsch {
6172394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6173394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6174394ed5ebSJunchao Zhang 
6175394ed5ebSJunchao Zhang   PetscFunctionBegin;
61769566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6177394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6178394ed5ebSJunchao Zhang   i[0]        = 0;
6179394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6180394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6181394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6182394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6183394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6184394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6185394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6186394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6187394ed5ebSJunchao Zhang         imap1[t1] = t;
6188394ed5ebSJunchao Zhang         imap2[t2] = t;
6189394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6190394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61919371c9d4SSatish Balay         t1++;
61929371c9d4SSatish Balay         t2++;
61939371c9d4SSatish Balay         t++;
6194394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6195394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6196394ed5ebSJunchao Zhang         imap1[t1] = t;
6197394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61989371c9d4SSatish Balay         t1++;
61999371c9d4SSatish Balay         t++;
6200394ed5ebSJunchao Zhang       } else {
6201394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6202394ed5ebSJunchao Zhang         imap2[t2] = t;
6203394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
62049371c9d4SSatish Balay         t2++;
62059371c9d4SSatish Balay         t++;
6206394ed5ebSJunchao Zhang       }
6207394ed5ebSJunchao Zhang     }
6208394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6209394ed5ebSJunchao Zhang     while (b1 < e1) {
6210394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6211394ed5ebSJunchao Zhang       imap1[t1] = t;
6212394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
62139371c9d4SSatish Balay       t1++;
62149371c9d4SSatish Balay       t++;
6215394ed5ebSJunchao Zhang     }
6216394ed5ebSJunchao Zhang     while (b2 < e2) {
6217394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6218394ed5ebSJunchao Zhang       imap2[t2] = t;
6219394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
62209371c9d4SSatish Balay       t2++;
62219371c9d4SSatish Balay       t++;
6222394ed5ebSJunchao Zhang     }
62236497c311SBarry Smith     PetscCall(PetscIntCast(t, i + r + 1));
6224394ed5ebSJunchao Zhang   }
62253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6226394ed5ebSJunchao Zhang }
6227394ed5ebSJunchao Zhang 
622827430b45SBarry Smith /*
622927430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6230394ed5ebSJunchao Zhang 
6231394ed5ebSJunchao Zhang   Input Parameters:
6232394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6233394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6234394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6235394ed5ebSJunchao Zhang 
6236394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6237394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6238394ed5ebSJunchao Zhang 
6239394ed5ebSJunchao Zhang   Output Parameters:
6240394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6241394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6242394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6243394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6244394ed5ebSJunchao Zhang 
6245394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6246158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6247158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6248394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6249394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6250394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6251394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6252394ed5ebSJunchao Zhang 
6253394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6254394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6255394ed5ebSJunchao Zhang 
6256394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6257394ed5ebSJunchao Zhang 
6258158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6259394ed5ebSJunchao Zhang */
6260d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6261d71ae5a4SJacob Faibussowitsch {
6262394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6263394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6264394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6265394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6266394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6267394ed5ebSJunchao Zhang 
6268394ed5ebSJunchao Zhang   PetscFunctionBegin;
62699566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62709566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6271394ed5ebSJunchao Zhang   m = rend - rstart;
6272394ed5ebSJunchao Zhang 
6273651b1cf9SStefano Zampini   /* Skip negative rows */
6274651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62759371c9d4SSatish Balay     if (i[k] >= 0) break;
6276394ed5ebSJunchao Zhang 
6277394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6278394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6279394ed5ebSJunchao Zhang   */
6280394ed5ebSJunchao Zhang   while (k < n) {
6281394ed5ebSJunchao Zhang     row = i[k];
6282394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62839371c9d4SSatish Balay     for (s = k; s < n; s++)
62849371c9d4SSatish Balay       if (i[s] != row) break;
6285651b1cf9SStefano Zampini 
62861690c2aeSBarry Smith     /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */
6287394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
62881690c2aeSBarry Smith       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX;
628954c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6290394ed5ebSJunchao Zhang     }
62919566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6292158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6293394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6294394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6295394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6296394ed5ebSJunchao Zhang 
6297394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6298394ed5ebSJunchao Zhang     Atot += mid - k;
6299394ed5ebSJunchao Zhang     Btot += s - mid;
6300394ed5ebSJunchao Zhang 
6301651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6302394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6303394ed5ebSJunchao Zhang       col = j[p];
63049371c9d4SSatish Balay       do {
63051690c2aeSBarry Smith         j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */
63069371c9d4SSatish Balay         p++;
6307651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6308394ed5ebSJunchao Zhang       Annz++;
6309394ed5ebSJunchao Zhang     }
6310394ed5ebSJunchao Zhang 
6311651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6312394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6313394ed5ebSJunchao Zhang       col = j[p];
6314d71ae5a4SJacob Faibussowitsch       do {
6315d71ae5a4SJacob Faibussowitsch         p++;
6316d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6317394ed5ebSJunchao Zhang       Bnnz++;
6318394ed5ebSJunchao Zhang     }
6319394ed5ebSJunchao Zhang     k = s;
6320394ed5ebSJunchao Zhang   }
6321394ed5ebSJunchao Zhang 
6322394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6323158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6324158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6325158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6326158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6327394ed5ebSJunchao Zhang 
63286aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6329394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6330394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6331394ed5ebSJunchao Zhang     k   = rowBegin[r];
6332394ed5ebSJunchao Zhang     mid = rowMid[r];
6333394ed5ebSJunchao Zhang     s   = rowEnd[r];
63348e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
63358e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6336394ed5ebSJunchao Zhang     Atot += mid - k;
6337394ed5ebSJunchao Zhang     Btot += s - mid;
6338394ed5ebSJunchao Zhang 
6339394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6340394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6341394ed5ebSJunchao Zhang       col = j[p];
6342394ed5ebSJunchao Zhang       q   = p;
6343d71ae5a4SJacob Faibussowitsch       do {
6344d71ae5a4SJacob Faibussowitsch         p++;
6345d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6346394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6347394ed5ebSJunchao Zhang       Annz++;
6348394ed5ebSJunchao Zhang     }
6349394ed5ebSJunchao Zhang 
6350394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6351394ed5ebSJunchao Zhang       col = j[p];
6352394ed5ebSJunchao Zhang       q   = p;
6353d71ae5a4SJacob Faibussowitsch       do {
6354d71ae5a4SJacob Faibussowitsch         p++;
6355d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6356394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6357394ed5ebSJunchao Zhang       Bnnz++;
6358394ed5ebSJunchao Zhang     }
6359394ed5ebSJunchao Zhang   }
6360394ed5ebSJunchao Zhang   /* Output */
6361394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6362394ed5ebSJunchao Zhang   *Annz_  = Annz;
6363394ed5ebSJunchao Zhang   *Atot_  = Atot;
6364394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6365394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6366394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6367394ed5ebSJunchao Zhang   *Btot_  = Btot;
6368394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
63693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6370394ed5ebSJunchao Zhang }
6371394ed5ebSJunchao Zhang 
637227430b45SBarry Smith /*
637327430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6374158ec288SJunchao Zhang 
6375158ec288SJunchao Zhang   Input Parameters:
6376158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6377158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6378158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6379651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6380158ec288SJunchao Zhang 
6381158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6382158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6383158ec288SJunchao Zhang 
6384158ec288SJunchao Zhang   Example:
6385158ec288SJunchao Zhang     nnz1 = 4
6386158ec288SJunchao Zhang     nnz  = 6
6387158ec288SJunchao Zhang     imap = [1,3,4,5]
6388158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6389158ec288SJunchao Zhang    then,
6390158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6391158ec288SJunchao Zhang */
6392d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6393d71ae5a4SJacob Faibussowitsch {
6394158ec288SJunchao Zhang   PetscCount k, p;
6395158ec288SJunchao Zhang 
6396158ec288SJunchao Zhang   PetscFunctionBegin;
6397158ec288SJunchao Zhang   jmap_new[0] = 0;
6398158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6399158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6400158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6401158ec288SJunchao Zhang   }
6402158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
64033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6404158ec288SJunchao Zhang }
6405158ec288SJunchao Zhang 
640649abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data)
64072c4ab24aSJunchao Zhang {
640849abdd8aSBarry Smith   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data;
64092c4ab24aSJunchao Zhang 
64102c4ab24aSJunchao Zhang   PetscFunctionBegin;
64112c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
64122c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
64132c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
64142c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
64152c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
64162c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
64172c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
64182c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
64192c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
64202c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
64212c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
64222c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
64232c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
64242c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
64252c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
64262c4ab24aSJunchao Zhang }
64272c4ab24aSJunchao Zhang 
6428d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6429d71ae5a4SJacob Faibussowitsch {
6430394ed5ebSJunchao Zhang   MPI_Comm             comm;
6431394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6432394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6433394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6434394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
64352c4ab24aSJunchao Zhang   PetscContainer       container;
64362c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6437394ed5ebSJunchao Zhang 
6438394ed5ebSJunchao Zhang   PetscFunctionBegin;
64399566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
64409566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6441cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6442eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6443cbc6b225SStefano Zampini #else
64449566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6445cbc6b225SStefano Zampini #endif
64469566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6447cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6448cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6449cbc6b225SStefano Zampini 
64509566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
64519566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
64529566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
64539566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
64549566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
64559566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
64569566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
64579566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
64589566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6459394ed5ebSJunchao Zhang 
64606aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6461394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6462394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6463e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6464e8729f6fSJunchao Zhang 
6465e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6466394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6467394ed5ebSJunchao Zhang 
6468394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6469394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6470394ed5ebSJunchao Zhang      will have positive row indices.
6471394ed5ebSJunchao Zhang   */
6472394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
64731690c2aeSBarry Smith     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN;                /* e.g., -2^31, minimal to move them ahead */
64741690c2aeSBarry Smith     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */
6475f7d195e4SLawrence Mitchell     else {
6476f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
64771690c2aeSBarry Smith       if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */
6478f7d195e4SLawrence Mitchell     }
6479394ed5ebSJunchao Zhang   }
6480394ed5ebSJunchao Zhang 
6481da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64829566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6483651b1cf9SStefano Zampini 
6484651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6485651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64861690c2aeSBarry Smith     if (i1[k] > PETSC_INT_MIN) break;
64876497c311SBarry Smith   PetscCount i1start = k;
6488651b1cf9SStefano Zampini 
64891690c2aeSBarry Smith   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */
64901690c2aeSBarry Smith   for (; k < rem; k++) i1[k] += PETSC_INT_MAX;                                    /* Revert row indices of local rows*/
6491394ed5ebSJunchao Zhang 
6492394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6493394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6494394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6495394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6496394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6497394ed5ebSJunchao Zhang   const PetscInt *ranges;
6498394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6499394ed5ebSJunchao Zhang 
65009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
65019566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6502394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6503394ed5ebSJunchao Zhang     PetscMPIInt owner;
6504394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6505cbc6b225SStefano Zampini 
6506394ed5ebSJunchao Zhang     /* Locate a row range */
6507394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
65089566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6509394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6510394ed5ebSJunchao Zhang 
6511394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
65129566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6513394ed5ebSJunchao Zhang 
6514394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6515394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6516394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6517394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6518394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6519cbc6b225SStefano Zampini 
65209566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
65219566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
65229566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
65239566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6524394ed5ebSJunchao Zhang       sendto   = sendto2;
6525394ed5ebSJunchao Zhang       nentries = nentries2;
6526394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6527394ed5ebSJunchao Zhang     }
6528394ed5ebSJunchao Zhang     sendto[nsend] = owner;
65296497c311SBarry Smith     PetscCall(PetscIntCast(p - k, &nentries[nsend]));
6530394ed5ebSJunchao Zhang     nsend++;
6531394ed5ebSJunchao Zhang     k = p;
6532394ed5ebSJunchao Zhang   }
6533394ed5ebSJunchao Zhang 
6534394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6535394ed5ebSJunchao Zhang   PetscSF      sf1;
6536394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6537394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6538394ed5ebSJunchao Zhang   PetscInt    *offsets;
6539394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6540394ed5ebSJunchao Zhang 
65419566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
65429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
65439566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6544394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6545394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6546394ed5ebSJunchao Zhang     iremote[k].index = 0;
6547394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
654854c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6549394ed5ebSJunchao Zhang   }
65509566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
65519566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
65529566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
65539566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6554e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6555394ed5ebSJunchao Zhang 
6556394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6557394ed5ebSJunchao Zhang   PetscSF sf2;
6558394ed5ebSJunchao Zhang   nroots  = nroots2;
6559394ed5ebSJunchao Zhang   nleaves = nleaves2;
65609566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
65619566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
65629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6563394ed5ebSJunchao Zhang   p = 0;
6564394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
656554c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6566394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6567394ed5ebSJunchao Zhang       iremote[p].rank = sendto[k];
65686497c311SBarry Smith       PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index));
6569394ed5ebSJunchao Zhang     }
6570394ed5ebSJunchao Zhang   }
65719566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6572394ed5ebSJunchao Zhang 
6573394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6574394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6575394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6577834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6578834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6579de0a9f35SPierre Jolivet   PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem);
6580de0a9f35SPierre Jolivet   PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem);
6581834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6582834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6583834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6584834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6585394ed5ebSJunchao Zhang 
65869566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65879566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6588394ed5ebSJunchao Zhang 
6589394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6590394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65919566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6592394ed5ebSJunchao Zhang 
6593651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6594651b1cf9SStefano Zampini   PetscCount *Cperm1;
6595834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6596de0a9f35SPierre Jolivet   PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem);
6597651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6598834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6599651b1cf9SStefano Zampini 
6600651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6601651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6602651b1cf9SStefano Zampini   PetscBool hypre;
660317b874c6SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre));
6604651b1cf9SStefano Zampini   if (hypre) {
6605651b1cf9SStefano Zampini     PetscInt *minj;
6606651b1cf9SStefano Zampini     PetscBT   hasdiag;
6607651b1cf9SStefano Zampini 
6608651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6609651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
66101690c2aeSBarry Smith     for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX;
6611651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6612651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6613651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6614651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6615651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6616651b1cf9SStefano Zampini     }
6617651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6618651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6619651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6620651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6621651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6622651b1cf9SStefano Zampini     }
6623651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6624651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6625651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6626651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6627651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6628651b1cf9SStefano Zampini     }
6629651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6630651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6631651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6632651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6633651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6634651b1cf9SStefano Zampini     }
6635651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6636651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6637651b1cf9SStefano Zampini   }
6638651b1cf9SStefano Zampini 
6639651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6640651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6641651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6642651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6643394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6644394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6645394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6646394ed5ebSJunchao Zhang 
6647651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
66489566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6649651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
66509566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6651394ed5ebSJunchao Zhang 
6652394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6653394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6654394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6655394ed5ebSJunchao Zhang 
66569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
66579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
66589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
66599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6660394ed5ebSJunchao Zhang 
6661394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6662158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6663158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6664158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6665158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6666394ed5ebSJunchao Zhang 
66679566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66689566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6669158ec288SJunchao Zhang 
6670158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6671158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6672158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6673158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6674158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6675158ec288SJunchao Zhang 
6676158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6677158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6678158ec288SJunchao Zhang 
6679158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6680158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6681158ec288SJunchao Zhang 
6682158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6683158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6684158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6685158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66869566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66879566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6688e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66899566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6690394ed5ebSJunchao Zhang 
6691158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6692158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6693158ec288SJunchao Zhang 
6694394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6695394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6696394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66989566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66999566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6700394ed5ebSJunchao Zhang     Aj = Aj_new;
6701394ed5ebSJunchao Zhang   }
6702394ed5ebSJunchao Zhang 
6703394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6704394ed5ebSJunchao Zhang     PetscInt *Bj_new;
67059566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
67069566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
67079566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6708394ed5ebSJunchao Zhang     Bj = Bj_new;
6709394ed5ebSJunchao Zhang   }
6710394ed5ebSJunchao Zhang 
6711cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6712394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6713cbc6b225SStefano Zampini   MatType          rtype;
6714394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6715cf8ba265SJunchao Zhang   PetscObjectState state;
67169566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
67179566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6718394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
67199371c9d4SSatish Balay   if (cstart) {
67209371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
67219371c9d4SSatish Balay   }
6722c508b908SBarry Smith 
67239566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6724c508b908SBarry Smith 
6725c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6726c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
67279566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
67280da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6729c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6730c508b908SBarry Smith 
6731c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6732c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
67339566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
67340da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6735c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6736c508b908SBarry Smith 
67379566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
67385bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6739cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6740462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6741cbc6b225SStefano Zampini 
6742394ed5ebSJunchao Zhang   a          = (Mat_SeqAIJ *)mpiaij->A->data;
6743394ed5ebSJunchao Zhang   b          = (Mat_SeqAIJ *)mpiaij->B->data;
67449f0612e4SBarry Smith   a->free_a  = PETSC_TRUE;
67459f0612e4SBarry Smith   a->free_ij = PETSC_TRUE;
67469f0612e4SBarry Smith   b->free_a  = PETSC_TRUE;
67479f0612e4SBarry Smith   b->free_ij = PETSC_TRUE;
674817b874c6SStefano Zampini   a->maxnz   = a->nz;
674917b874c6SStefano Zampini   b->maxnz   = b->nz;
6750394ed5ebSJunchao Zhang 
6751cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
67529566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
67539566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
67549566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
67559566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6756cbc6b225SStefano Zampini 
67572c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
67582c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
67592c4ab24aSJunchao Zhang   coo->n       = coo_n;
67602c4ab24aSJunchao Zhang   coo->sf      = sf2;
67612c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
67622c4ab24aSJunchao Zhang   coo->recvlen = nroots;
67632c4ab24aSJunchao Zhang   coo->Annz    = Annz;
67642c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
67652c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
67662c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
67672c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67682c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67692c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67702c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67712c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67722c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67732c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67742c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67752c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67762c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67772c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67782c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67792c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67802c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67812c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67822c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67832c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67842c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67852c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
678649abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ));
67872c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67882c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6790394ed5ebSJunchao Zhang }
6791394ed5ebSJunchao Zhang 
6792d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6793d71ae5a4SJacob Faibussowitsch {
6794394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6795394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6796394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67972c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67982c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67992c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
68002c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
68012c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
68022c4ab24aSJunchao Zhang   PetscContainer       container;
68032c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6804394ed5ebSJunchao Zhang 
6805394ed5ebSJunchao Zhang   PetscFunctionBegin;
68062c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
68072c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
68082c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
68092c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
68102c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
68112c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
68122c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
68132c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
68142c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
68152c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
68162c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
68172c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
68182c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
68192c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
68202c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
68212c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
68222c4ab24aSJunchao Zhang 
68239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
68249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6825394ed5ebSJunchao Zhang 
6826394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
68272c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6828394ed5ebSJunchao Zhang 
6829394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
68302c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6831394ed5ebSJunchao Zhang   /* Add local entries to A and B */
68322c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6833da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6834158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6835158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6836394ed5ebSJunchao Zhang   }
68372c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6838158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6839158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6840158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6841394ed5ebSJunchao Zhang   }
68422c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6843394ed5ebSJunchao Zhang 
6844394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
68452c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6846394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6847394ed5ebSJunchao Zhang   }
68482c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6849394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6850394ed5ebSJunchao Zhang   }
68519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
68529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
68533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6854394ed5ebSJunchao Zhang }
6855394ed5ebSJunchao Zhang 
6856ccd8e176SBarry Smith /*MC
6857ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6858ccd8e176SBarry Smith 
6859ccd8e176SBarry Smith    Options Database Keys:
686011a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6861ccd8e176SBarry Smith 
6862ccd8e176SBarry Smith    Level: beginner
68630cd7f59aSBarry Smith 
68640cd7f59aSBarry Smith    Notes:
68652ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
68660cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
68670cd7f59aSBarry Smith     in the matrix
68680cd7f59aSBarry Smith 
686911a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
687011a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6871ccd8e176SBarry Smith 
68721cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6873ccd8e176SBarry Smith M*/
6874d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6875d71ae5a4SJacob Faibussowitsch {
6876ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6877ccd8e176SBarry Smith   PetscMPIInt size;
6878ccd8e176SBarry Smith 
6879ccd8e176SBarry Smith   PetscFunctionBegin;
68809566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68812205254eSKarl Rupp 
68824dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6883ccd8e176SBarry Smith   B->data       = (void *)b;
6884aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6885ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6886ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6887ccd8e176SBarry Smith   b->size       = size;
68882205254eSKarl Rupp 
68899566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6890ccd8e176SBarry Smith 
6891ccd8e176SBarry Smith   /* build cache for off array entries formed */
68929566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68932205254eSKarl Rupp 
6894ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6895f4259b30SLisandro Dalcin   b->colmap      = NULL;
6896f4259b30SLisandro Dalcin   b->garray      = NULL;
6897ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6898ccd8e176SBarry Smith 
6899ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
69000298fd71SBarry Smith   b->lvec  = NULL;
69010298fd71SBarry Smith   b->Mvctx = NULL;
6902ccd8e176SBarry Smith 
6903ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6904f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6905f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6906ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6907ccd8e176SBarry Smith 
6908f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
69090298fd71SBarry Smith   b->spptr = NULL;
6910f60c3dc2SHong Zhang 
69119566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
69129566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
69139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
69149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
69159566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
69169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
6917674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ));
69189566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
69199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
69209566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
69219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
69223d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
69239566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
69243d0639e7SStefano Zampini #endif
6925d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6926d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6927d5e393b6SSuyash Tandon #endif
69283d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
69299566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
69303d0639e7SStefano Zampini #endif
69319779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
69329566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6933191b95cbSRichard Tran Mills #endif
69349566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
69359566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
69369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
69379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
69385d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
69399566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
69405d7652ecSHong Zhang #endif
6941d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
69429566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6943d24d4204SJose E. Roman #endif
69449566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
69459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
69463dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
69479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
69489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
69493dad0653Sstefano_zampini #endif
69509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
69519566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
69529566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
69539566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
69549566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
69553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6956ccd8e176SBarry Smith }
695781824310SBarry Smith 
69585d83a8b1SBarry Smith /*@
695911a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
696003bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
696103bfb495SBarry Smith 
6962d083f849SBarry Smith   Collective
696303bfb495SBarry Smith 
696403bfb495SBarry Smith   Input Parameters:
696503bfb495SBarry Smith + comm - MPI communicator
696611a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
696703bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6968d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
69692ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
69702ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69712ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6972483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
697304ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
697403bfb495SBarry Smith . a    - matrix values
6975483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69762ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
697703bfb495SBarry Smith - oa   - matrix values
697803bfb495SBarry Smith 
697903bfb495SBarry Smith   Output Parameter:
698003bfb495SBarry Smith . mat - the matrix
698103bfb495SBarry Smith 
698203bfb495SBarry Smith   Level: advanced
698303bfb495SBarry Smith 
698403bfb495SBarry Smith   Notes:
6985f13dfd9eSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user
6986292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
698703bfb495SBarry Smith 
69882ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
698903bfb495SBarry Smith 
69902ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
699103bfb495SBarry Smith 
69927b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69937b55108eSBarry Smith 
6994dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6995dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6996dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6997dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
699811a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6999dca341c0SJed Brown   communication if it is known that only local entries will be set.
700003bfb495SBarry Smith 
70011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
7002db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
70032b26979fSBarry Smith @*/
7004d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
7005d71ae5a4SJacob Faibussowitsch {
700603bfb495SBarry Smith   Mat_MPIAIJ *maij;
700703bfb495SBarry Smith 
700803bfb495SBarry Smith   PetscFunctionBegin;
700908401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
7010aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
7011aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
70129566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
70139566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
70149566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
701503bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
70162205254eSKarl Rupp 
70178d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
701803bfb495SBarry Smith 
70199566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
70209566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
702103bfb495SBarry Smith 
70229566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
70239566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
702403bfb495SBarry Smith 
70259566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
70269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
70279566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
70289566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
70299566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
70303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
703103bfb495SBarry Smith }
703203bfb495SBarry Smith 
70334e84afc0SStefano Zampini typedef struct {
70344e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
70354e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
70364e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
70374e84afc0SStefano Zampini 
70384e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
70394e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
70404e84afc0SStefano Zampini   PetscScalar *bufa;
70414e84afc0SStefano Zampini   Mat          P_oth;
70424e84afc0SStefano Zampini 
70434e84afc0SStefano Zampini   /* may take advantage of merging product->B */
7044ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
70454e84afc0SStefano Zampini 
7046ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
70474e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
70484e84afc0SStefano Zampini      of the temporary storage */
70494e84afc0SStefano Zampini   PetscBool reusesym;
70504e84afc0SStefano Zampini 
70514e84afc0SStefano Zampini   /* support for COO values insertion */
7052ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
7053ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
7054ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
7055ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
7056c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
7057c215019aSStefano Zampini   PetscMemType mtype;
70584e84afc0SStefano Zampini 
70594e84afc0SStefano Zampini   /* customization */
70604e84afc0SStefano Zampini   PetscBool abmerge;
7061abb89eb1SStefano Zampini   PetscBool P_oth_bind;
70624e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
70634e84afc0SStefano Zampini 
7064ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
7065d71ae5a4SJacob Faibussowitsch {
70664e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
70674e84afc0SStefano Zampini   PetscInt             i;
70684e84afc0SStefano Zampini 
70694e84afc0SStefano Zampini   PetscFunctionBegin;
70709566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70719566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70729566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70739566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70749566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70759566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70769566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
707748a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70789566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70799566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70809566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70819566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70829566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70839566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70854e84afc0SStefano Zampini }
70864e84afc0SStefano Zampini 
7087fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7088fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7089fff043a9SJunchao Zhang  */
7090d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7091d71ae5a4SJacob Faibussowitsch {
7092c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7093c215019aSStefano Zampini 
7094c215019aSStefano Zampini   PetscFunctionBegin;
70959566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7096c215019aSStefano Zampini   if (f) {
70979566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7098c215019aSStefano Zampini   } else {
7099c215019aSStefano Zampini     const PetscScalar *vv;
7100c215019aSStefano Zampini 
71019566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7102c215019aSStefano Zampini     if (n && idx) {
7103c215019aSStefano Zampini       PetscScalar    *w  = v;
7104c215019aSStefano Zampini       const PetscInt *oi = idx;
7105c215019aSStefano Zampini       PetscInt        j;
7106c215019aSStefano Zampini 
7107c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7108c215019aSStefano Zampini     } else {
71099566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7110c215019aSStefano Zampini     }
71119566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7112c215019aSStefano Zampini   }
71133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7114c215019aSStefano Zampini }
7115c215019aSStefano Zampini 
7116d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7117d71ae5a4SJacob Faibussowitsch {
71184e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
71194e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
71204e84afc0SStefano Zampini 
71214e84afc0SStefano Zampini   PetscFunctionBegin;
71224e84afc0SStefano Zampini   MatCheckProduct(C, 1);
712328b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
71244e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
71254e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
712648a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
712748a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
71284e84afc0SStefano Zampini   }
71294e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7130abb89eb1SStefano Zampini 
7131abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
713208401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
71339566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7134abb89eb1SStefano Zampini   }
71354e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
71366497c311SBarry Smith     PetscInt noff;
71374e84afc0SStefano Zampini 
71386497c311SBarry Smith     PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff));
71394e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
71404e84afc0SStefano Zampini     if (noff) {
71416497c311SBarry Smith       PetscInt nown;
7142c215019aSStefano Zampini 
71436497c311SBarry Smith       PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown));
71449566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
71459566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
71464e84afc0SStefano Zampini       n_o += noff;
71474e84afc0SStefano Zampini       n_d += nown;
71484e84afc0SStefano Zampini     } else {
7149c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7150c215019aSStefano Zampini 
71519566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
71524e84afc0SStefano Zampini       n_d += mm->nz;
71534e84afc0SStefano Zampini     }
71544e84afc0SStefano Zampini   }
7155c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
71569566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71579566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71584e84afc0SStefano Zampini   }
71599566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
71603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71614e84afc0SStefano Zampini }
71624e84afc0SStefano Zampini 
71634e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
71644e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7165d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7166d71ae5a4SJacob Faibussowitsch {
71674e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7168ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
71694e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
71704e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71714e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71724e84afc0SStefano Zampini   IS                     glob      = NULL;
71734e84afc0SStefano Zampini   const char            *prefix;
71744e84afc0SStefano Zampini   char                   pprefix[256];
71754e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
717682a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
717782a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7178ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7179ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7180ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7181ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7182ddea5d60SJunchao Zhang 
71834e84afc0SStefano Zampini   MatProductType ptype;
7184d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71854e84afc0SStefano Zampini   PetscMPIInt    size;
71864e84afc0SStefano Zampini 
71874e84afc0SStefano Zampini   PetscFunctionBegin;
71884e84afc0SStefano Zampini   MatCheckProduct(C, 1);
718928b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71904e84afc0SStefano Zampini   ptype = product->type;
7191b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7192fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7193fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7194fa046f9fSJunchao Zhang   }
71954e84afc0SStefano Zampini   switch (ptype) {
71964e84afc0SStefano Zampini   case MATPRODUCT_AB:
71974e84afc0SStefano Zampini     A          = product->A;
71984e84afc0SStefano Zampini     P          = product->B;
71994e84afc0SStefano Zampini     m          = A->rmap->n;
72004e84afc0SStefano Zampini     n          = P->cmap->n;
72014e84afc0SStefano Zampini     M          = A->rmap->N;
72024e84afc0SStefano Zampini     N          = P->cmap->N;
7203ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
72044e84afc0SStefano Zampini     break;
72054e84afc0SStefano Zampini   case MATPRODUCT_AtB:
72064e84afc0SStefano Zampini     P          = product->A;
72074e84afc0SStefano Zampini     A          = product->B;
72084e84afc0SStefano Zampini     m          = P->cmap->n;
72094e84afc0SStefano Zampini     n          = A->cmap->n;
72104e84afc0SStefano Zampini     M          = P->cmap->N;
72114e84afc0SStefano Zampini     N          = A->cmap->N;
72124e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
72134e84afc0SStefano Zampini     break;
72144e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
72154e84afc0SStefano Zampini     A          = product->A;
72164e84afc0SStefano Zampini     P          = product->B;
72174e84afc0SStefano Zampini     m          = P->cmap->n;
72184e84afc0SStefano Zampini     n          = P->cmap->n;
72194e84afc0SStefano Zampini     M          = P->cmap->N;
72204e84afc0SStefano Zampini     N          = P->cmap->N;
72214e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
72224e84afc0SStefano Zampini     break;
7223d71ae5a4SJacob Faibussowitsch   default:
7224d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
72254e84afc0SStefano Zampini   }
72269566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
72274e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
72284e84afc0SStefano Zampini 
72294e84afc0SStefano Zampini   /* defaults */
72304e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
72314e84afc0SStefano Zampini     mp[i]    = NULL;
72324e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
72334e84afc0SStefano Zampini     rmapt[i] = -1;
72344e84afc0SStefano Zampini     cmapt[i] = -1;
72354e84afc0SStefano Zampini     rmapa[i] = NULL;
72364e84afc0SStefano Zampini     cmapa[i] = NULL;
72374e84afc0SStefano Zampini   }
72384e84afc0SStefano Zampini 
72394e84afc0SStefano Zampini   /* customization */
72409566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
72414e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
72424e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
72434e84afc0SStefano Zampini     if (product->api_user) {
7244d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
72459566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72469566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7247d0609cedSBarry Smith       PetscOptionsEnd();
72484e84afc0SStefano Zampini     } else {
7249d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
72509566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72519566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7252d0609cedSBarry Smith       PetscOptionsEnd();
7253abb89eb1SStefano Zampini     }
7254abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7255abb89eb1SStefano Zampini     if (product->api_user) {
7256d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
72579566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7258d0609cedSBarry Smith       PetscOptionsEnd();
7259abb89eb1SStefano Zampini     } else {
7260d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
72619566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7262d0609cedSBarry Smith       PetscOptionsEnd();
72634e84afc0SStefano Zampini     }
72644e84afc0SStefano Zampini   }
72654e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
72664e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
72679566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
72689566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
72699566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
72709566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72719566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7272ddea5d60SJunchao Zhang 
7273ddea5d60SJunchao Zhang   cp = 0;
72744e84afc0SStefano Zampini   switch (ptype) {
72754e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72769566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72774e84afc0SStefano Zampini 
7278ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7279ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72804e84afc0SStefano Zampini       /* P is product->B */
72819566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72829566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72839566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72849566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72859566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72869566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72879566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72884e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72899566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72909566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72919566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72924e84afc0SStefano Zampini       rmapt[cp] = 1;
72934e84afc0SStefano Zampini       cmapt[cp] = 2;
72944e84afc0SStefano Zampini       cmapa[cp] = globidx;
72954e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72964e84afc0SStefano Zampini       cp++;
7297ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72989566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72999566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73009566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73019566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73029566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73039566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73044e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73059566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73069566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73074e84afc0SStefano Zampini       rmapt[cp] = 1;
73084e84afc0SStefano Zampini       cmapt[cp] = 1;
73094e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73104e84afc0SStefano Zampini       cp++;
73119566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
73129566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73139566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73149566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73159566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73169566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73174e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73189566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73199566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73204e84afc0SStefano Zampini       rmapt[cp] = 1;
73214e84afc0SStefano Zampini       cmapt[cp] = 2;
73224e84afc0SStefano Zampini       cmapa[cp] = p->garray;
73234e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73244e84afc0SStefano Zampini       cp++;
73254e84afc0SStefano Zampini     }
7326ddea5d60SJunchao Zhang 
7327ddea5d60SJunchao Zhang     /* A_off * P_other */
73284e84afc0SStefano Zampini     if (mmdata->P_oth) {
73299566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
73309566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7331f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73329566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73339566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73349566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73359566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73369566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73379566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73389566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73394e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73409566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73419566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73424e84afc0SStefano Zampini       rmapt[cp] = 1;
73434e84afc0SStefano Zampini       cmapt[cp] = 2;
73444e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73454e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73464e84afc0SStefano Zampini       cp++;
73474e84afc0SStefano Zampini     }
73484e84afc0SStefano Zampini     break;
7349ddea5d60SJunchao Zhang 
73504e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
73514e84afc0SStefano Zampini     /* A is product->B */
73529566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7353ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
73549566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
73559566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73569566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73579566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73589566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73599566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73604e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73619566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73629566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73639566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73644e84afc0SStefano Zampini       rmapt[cp] = 2;
73654e84afc0SStefano Zampini       rmapa[cp] = globidx;
73664e84afc0SStefano Zampini       cmapt[cp] = 2;
73674e84afc0SStefano Zampini       cmapa[cp] = globidx;
73684e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73694e84afc0SStefano Zampini       cp++;
73704e84afc0SStefano Zampini     } else {
73719566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73729566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73739566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73749566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73759566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73769566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73774e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73789566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73799566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73809566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73814e84afc0SStefano Zampini       rmapt[cp] = 1;
73824e84afc0SStefano Zampini       cmapt[cp] = 2;
73834e84afc0SStefano Zampini       cmapa[cp] = globidx;
73844e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73854e84afc0SStefano Zampini       cp++;
73869566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73879566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73889566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73899566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73909566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73919566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73924e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73939566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73949566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73954e84afc0SStefano Zampini       rmapt[cp] = 2;
73964e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73974e84afc0SStefano Zampini       cmapt[cp] = 2;
73984e84afc0SStefano Zampini       cmapa[cp] = globidx;
73994e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74004e84afc0SStefano Zampini       cp++;
74014e84afc0SStefano Zampini     }
74024e84afc0SStefano Zampini     break;
74034e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
74049566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
74054e84afc0SStefano Zampini     /* P is product->B */
74069566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
74079566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
74089566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
74099566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
74109566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74119566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74129566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74134e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
74149566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
74159566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74169566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
74174e84afc0SStefano Zampini     rmapt[cp] = 2;
74184e84afc0SStefano Zampini     rmapa[cp] = globidx;
74194e84afc0SStefano Zampini     cmapt[cp] = 2;
74204e84afc0SStefano Zampini     cmapa[cp] = globidx;
74214e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
74224e84afc0SStefano Zampini     cp++;
74234e84afc0SStefano Zampini     if (mmdata->P_oth) {
74249566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
74259566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7426f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
74279566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
74289566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
74299566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
74309566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74319566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74329566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74339566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74344e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74359566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74369566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74374e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
74384e84afc0SStefano Zampini       cp++;
74399566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
74409566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
74419566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74429566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74439566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74449566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74454e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74469566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74479566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74484e84afc0SStefano Zampini       rmapt[cp] = 2;
74494e84afc0SStefano Zampini       rmapa[cp] = globidx;
74504e84afc0SStefano Zampini       cmapt[cp] = 2;
74514e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
74524e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74534e84afc0SStefano Zampini       cp++;
74544e84afc0SStefano Zampini     }
74554e84afc0SStefano Zampini     break;
7456d71ae5a4SJacob Faibussowitsch   default:
7457d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
74584e84afc0SStefano Zampini   }
74594e84afc0SStefano Zampini   /* sanity check */
74609371c9d4SSatish Balay   if (size > 1)
74619371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
74624e84afc0SStefano Zampini 
74639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7464ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7465ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7466ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7467ddea5d60SJunchao Zhang   }
74684e84afc0SStefano Zampini   mmdata->cp             = cp;
74694e84afc0SStefano Zampini   C->product->data       = mmdata;
74704e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74714e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74724e84afc0SStefano Zampini 
7473c215019aSStefano Zampini   /* memory type */
7474c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74759566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7476d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74779566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7478c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7479d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74803214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7481c215019aSStefano Zampini 
74824e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7483ddea5d60SJunchao Zhang 
7484ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7485ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7486ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7487ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7488ddea5d60SJunchao Zhang   */
74894e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74904e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74914e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7492ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74934e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74944e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74954e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74964e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74974e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74984e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74994e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
75004e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7501ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7502ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
75034e84afc0SStefano Zampini       }
75044e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
75054e84afc0SStefano Zampini   }
7506ddea5d60SJunchao Zhang 
7507ddea5d60SJunchao Zhang   /*
7508ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7509ddea5d60SJunchao Zhang 
7510ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7511ddea5d60SJunchao Zhang 
7512d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7513ddea5d60SJunchao Zhang 
7514ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7515ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7516ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7517ddea5d60SJunchao Zhang 
7518ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7519da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7520ddea5d60SJunchao Zhang   */
75219566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
75229566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7523ddea5d60SJunchao Zhang 
7524ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7525ddea5d60SJunchao Zhang   if (hasoffproc) {
75264e84afc0SStefano Zampini     PetscSF  msf;
75274e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
75284e84afc0SStefano Zampini 
75299566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
75309566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
75319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7532ddea5d60SJunchao Zhang 
75334e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
75344e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
75354e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
75364e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7537ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
75384e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
75394e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
75404e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
75414e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
75424e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
75434e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
75444e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
75454e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
75464e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
75474e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
75484e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
75494e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
75504e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7551ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
75524e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
75534e84afc0SStefano Zampini               *coi++    = gr;
75544e84afc0SStefano Zampini               *idxoff++ = j;
75554e84afc0SStefano Zampini             }
75564e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
75574e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
75584e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75594e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
75604e84afc0SStefano Zampini             } else { /* offdiag */
75614e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75624e84afc0SStefano Zampini             }
75634e84afc0SStefano Zampini             ncoo_o += nz;
7564ddea5d60SJunchao Zhang           } else { /* this is a local row */
75654e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
75664e84afc0SStefano Zampini           }
75674e84afc0SStefano Zampini         }
75684e84afc0SStefano Zampini       }
75694e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
75704e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75714e84afc0SStefano Zampini     }
75724e84afc0SStefano Zampini 
75739566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75746497c311SBarry Smith     PetscInt incoo_o;
75756497c311SBarry Smith     PetscCall(PetscIntCast(ncoo_o, &incoo_o));
75766497c311SBarry Smith     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75779566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75789566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75794e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75809566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75819566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75829566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75839566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75849566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75859566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7586ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75879566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75884e84afc0SStefano Zampini     coo_i = coo_i2;
75894e84afc0SStefano Zampini     coo_j = coo_j2;
75904e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75914e84afc0SStefano Zampini     ncoo = ncoo_d;
75929566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7593c215019aSStefano Zampini 
75949566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75959566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75969566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75974e84afc0SStefano Zampini   }
7598c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75994e84afc0SStefano Zampini 
7600ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
76014e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
76024e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
76034e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
76044e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
76054e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
76064e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
76074e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
76084e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
76094e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
76104e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
76114e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
76124e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
76134e84afc0SStefano Zampini 
76144e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7615ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7616ddea5d60SJunchao Zhang       /* fill coo_i */
76174e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
76184e84afc0SStefano Zampini         const PetscInt gr = i + rs;
76194e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
76204e84afc0SStefano Zampini       }
7621ddea5d60SJunchao Zhang       /* fill coo_j */
7622ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
76239566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7624ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7625ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7626ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
76274e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
76284e84afc0SStefano Zampini       }
76294e84afc0SStefano Zampini       ncoo_d += mm->nz;
7630ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
76314e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
76324e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
76334e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
76344e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7635ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
76364e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7637ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
76384e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
76394e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
76404e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7641ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
76424e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
76434e84afc0SStefano Zampini           }
76444e84afc0SStefano Zampini           ncoo_d += nz;
76454e84afc0SStefano Zampini         }
76464e84afc0SStefano Zampini       }
76474e84afc0SStefano Zampini     }
76484e84afc0SStefano Zampini   }
764948a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
76509566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
765148a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
76529566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7653ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
76549566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
76554e84afc0SStefano Zampini 
76564e84afc0SStefano Zampini   /* preallocate with COO data */
76579566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76589566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76604e84afc0SStefano Zampini }
76614e84afc0SStefano Zampini 
7662d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7663d71ae5a4SJacob Faibussowitsch {
76644e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76654e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76664e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7667abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76684e84afc0SStefano Zampini #else
76694e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76704e84afc0SStefano Zampini #endif
76714e84afc0SStefano Zampini 
76724e84afc0SStefano Zampini   PetscFunctionBegin;
76734e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76744e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
767548a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
767665e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7677abb89eb1SStefano Zampini     switch (product->type) {
7678abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7679abb89eb1SStefano Zampini       if (product->api_user) {
7680d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76819566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7682d0609cedSBarry Smith         PetscOptionsEnd();
7683abb89eb1SStefano Zampini       } else {
7684d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76859566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7686d0609cedSBarry Smith         PetscOptionsEnd();
7687abb89eb1SStefano Zampini       }
7688abb89eb1SStefano Zampini       break;
7689abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7690abb89eb1SStefano Zampini       if (product->api_user) {
7691d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76929566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7693d0609cedSBarry Smith         PetscOptionsEnd();
7694abb89eb1SStefano Zampini       } else {
7695d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76969566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7697d0609cedSBarry Smith         PetscOptionsEnd();
7698abb89eb1SStefano Zampini       }
7699abb89eb1SStefano Zampini       break;
7700abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7701abb89eb1SStefano Zampini       if (product->api_user) {
7702d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
77039566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7704d0609cedSBarry Smith         PetscOptionsEnd();
7705abb89eb1SStefano Zampini       } else {
7706d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
77079566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7708d0609cedSBarry Smith         PetscOptionsEnd();
7709abb89eb1SStefano Zampini       }
7710abb89eb1SStefano Zampini       break;
7711d71ae5a4SJacob Faibussowitsch     default:
7712d71ae5a4SJacob Faibussowitsch       break;
7713abb89eb1SStefano Zampini     }
7714abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7715abb89eb1SStefano Zampini   }
77164e84afc0SStefano Zampini #endif
77174e84afc0SStefano Zampini   if (match) {
77184e84afc0SStefano Zampini     switch (product->type) {
77194e84afc0SStefano Zampini     case MATPRODUCT_AB:
77204e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7721d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7722d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7723d71ae5a4SJacob Faibussowitsch       break;
7724d71ae5a4SJacob Faibussowitsch     default:
7725d71ae5a4SJacob Faibussowitsch       break;
77264e84afc0SStefano Zampini     }
77274e84afc0SStefano Zampini   }
77284e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
77299566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
77303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
773181824310SBarry Smith }
773298921bdaSJacob Faibussowitsch 
773398921bdaSJacob Faibussowitsch /*
773472833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
773572833a62Smarkadams4 
773672833a62Smarkadams4    n - the number of block indices in cc[]
773772833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
773872833a62Smarkadams4 */
7739d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7740d71ae5a4SJacob Faibussowitsch {
774172833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
774272833a62Smarkadams4   const PetscInt *idx;
774372833a62Smarkadams4 
774472833a62Smarkadams4   PetscFunctionBegin;
774572833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
774672833a62Smarkadams4   if (nidx) {
774772833a62Smarkadams4     cnt     = 0;
774872833a62Smarkadams4     cc[cnt] = idx[0] / bs;
774972833a62Smarkadams4     for (j = 1; j < nidx; j++) {
775072833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
775172833a62Smarkadams4     }
775272833a62Smarkadams4   }
775372833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
775472833a62Smarkadams4   *n = cnt + 1;
77553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
775672833a62Smarkadams4 }
775772833a62Smarkadams4 
775872833a62Smarkadams4 /*
775972833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
776072833a62Smarkadams4 
776172833a62Smarkadams4     ncollapsed - the number of block indices
776272833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
776372833a62Smarkadams4 */
7764d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7765d71ae5a4SJacob Faibussowitsch {
776672833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
776772833a62Smarkadams4 
776872833a62Smarkadams4   PetscFunctionBegin;
776972833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
777072833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
777172833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
777272833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77739371c9d4SSatish Balay     cprevtmp = cprev;
77749371c9d4SSatish Balay     cprev    = merged;
77759371c9d4SSatish Balay     merged   = cprevtmp;
777672833a62Smarkadams4   }
777772833a62Smarkadams4   *ncollapsed = nprev;
777872833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
778072833a62Smarkadams4 }
778172833a62Smarkadams4 
77822d776b49SBarry Smith /*
778372833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
778472833a62Smarkadams4 
778572833a62Smarkadams4  Input Parameter:
778672833a62Smarkadams4  . Amat - matrix
778772833a62Smarkadams4  - symmetrize - make the result symmetric
778872833a62Smarkadams4  + scale - scale with diagonal
778972833a62Smarkadams4 
779072833a62Smarkadams4  Output Parameter:
779172833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
779272833a62Smarkadams4 
779372833a62Smarkadams4 */
7794e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7795d71ae5a4SJacob Faibussowitsch {
779672833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
779772833a62Smarkadams4   MPI_Comm  comm;
779872833a62Smarkadams4   Mat       Gmat;
779972833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
780072833a62Smarkadams4   Mat       a, b, c;
780172833a62Smarkadams4   MatType   jtype;
780272833a62Smarkadams4 
780372833a62Smarkadams4   PetscFunctionBegin;
780472833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
780572833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
780672833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
780772833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
780872833a62Smarkadams4   nloc = (Iend - Istart) / bs;
780972833a62Smarkadams4 
781072833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
781172833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
781272833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
781372833a62Smarkadams4 
781472833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
781572833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
781672833a62Smarkadams4      implementation */
781772833a62Smarkadams4   if (bs > 1) {
781872833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
781972833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
782072833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
782172833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
782272833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
782372833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
782472833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
78252cf69117Smarkadams4       MatScalar *aa, val, *AA;
78262cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
78276497c311SBarry Smith 
78289371c9d4SSatish Balay       if (isseqaij) {
78299371c9d4SSatish Balay         a = Amat;
78309371c9d4SSatish Balay         b = NULL;
78319371c9d4SSatish Balay       } else {
783272833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
78339371c9d4SSatish Balay         a             = d->A;
78349371c9d4SSatish Balay         b             = d->B;
783572833a62Smarkadams4       }
783672833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
783732603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
783872833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
78392cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
784059ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
78416497c311SBarry Smith 
784259ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
784359ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
784459ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
784559ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
784672833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
784759ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
784859ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
784959ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
785059ee9f9fSPierre Jolivet             else {
785159ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
785259ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
785359ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
785472833a62Smarkadams4               }
785559ee9f9fSPierre Jolivet             }
785659ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
785759ee9f9fSPierre Jolivet           }
785859ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
785972833a62Smarkadams4           if (!ok) {
786072833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
786159ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
786272833a62Smarkadams4             goto old_bs;
786372833a62Smarkadams4           }
786472833a62Smarkadams4         }
786572833a62Smarkadams4       }
786672833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
786772833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
786872833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78692cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
787072833a62Smarkadams4       // diag
787172833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
787272833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
78736497c311SBarry Smith 
787472833a62Smarkadams4         ai = aseq->i;
787572833a62Smarkadams4         n  = ai[brow + 1] - ai[brow];
787672833a62Smarkadams4         aj = aseq->j + ai[brow];
78776497c311SBarry Smith         for (PetscInt k = 0; k < n; k += bs) {   // block columns
787872833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
787972833a62Smarkadams4           val        = 0;
7880e02fb3cdSMark Adams           if (index_size == 0) {
78816497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
788272833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
78836497c311SBarry Smith               for (PetscInt jj = 0; jj < bs; jj++) {    // columns in block
788472833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
788572833a62Smarkadams4               }
788672833a62Smarkadams4             }
7887e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78886497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78896497c311SBarry Smith               PetscInt ii = index[iii];
7890e02fb3cdSMark Adams               aa          = aseq->a + ai[brow + ii] + k;
78916497c311SBarry Smith               for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block
78926497c311SBarry Smith                 PetscInt jj = index[jjj];
7893cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7894e02fb3cdSMark Adams               }
7895e02fb3cdSMark Adams             }
7896e02fb3cdSMark Adams           }
7897835f2295SStefano Zampini           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
789872833a62Smarkadams4           AA[k / bs] = val;
789972833a62Smarkadams4         }
790072833a62Smarkadams4         grow = Istart / bs + brow / bs;
790166521e1fSMark Adams         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES));
790272833a62Smarkadams4       }
790372833a62Smarkadams4       // off-diag
790472833a62Smarkadams4       if (ismpiaij) {
790572833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
790672833a62Smarkadams4         const PetscScalar *vals;
790772833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
79086497c311SBarry Smith 
790972833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
791072833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
791172833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
79126497c311SBarry Smith           for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
791359ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
791472833a62Smarkadams4             AA[k / bs] = 0;
791572833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
791672833a62Smarkadams4           }
791772833a62Smarkadams4           nc = ncols / bs;
791872833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7919e02fb3cdSMark Adams           if (index_size == 0) {
79206497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
792172833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
79226497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
79236497c311SBarry Smith                 for (PetscInt jj = 0; jj < bs; jj++) { // cols in block
7924835f2295SStefano Zampini                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
792572833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
792672833a62Smarkadams4                 }
792772833a62Smarkadams4               }
792872833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
792972833a62Smarkadams4             }
7930e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
79316497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
79326497c311SBarry Smith               PetscInt ii = index[iii];
7933e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
79346497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
79356497c311SBarry Smith                 for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block
79366497c311SBarry Smith                   PetscInt jj = index[jjj];
7937e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7938e02fb3cdSMark Adams                 }
7939e02fb3cdSMark Adams               }
7940e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7941e02fb3cdSMark Adams             }
7942e02fb3cdSMark Adams           }
794372833a62Smarkadams4           grow = Istart / bs + brow / bs;
794466521e1fSMark Adams           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES));
794572833a62Smarkadams4         }
794672833a62Smarkadams4       }
794772833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
794872833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79492cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
795072833a62Smarkadams4     } else {
795172833a62Smarkadams4       const PetscScalar *vals;
795272833a62Smarkadams4       const PetscInt    *idx;
795372833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
795472833a62Smarkadams4     old_bs:
795572833a62Smarkadams4       /*
795672833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
795772833a62Smarkadams4        */
795872833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
795932603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
796072833a62Smarkadams4       if (isseqaij) {
796172833a62Smarkadams4         PetscInt max_d_nnz;
79626497c311SBarry Smith 
796372833a62Smarkadams4         /*
796472833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
796572833a62Smarkadams4          */
796672833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
796772833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
796872833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
796948a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
797072833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
797172833a62Smarkadams4       } else if (ismpiaij) {
797272833a62Smarkadams4         Mat             Daij, Oaij;
797372833a62Smarkadams4         const PetscInt *garray;
797472833a62Smarkadams4         PetscInt        max_d_nnz;
79756497c311SBarry Smith 
797672833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
797772833a62Smarkadams4         /*
797872833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
797972833a62Smarkadams4          */
798072833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
798172833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
798272833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
798348a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
798472833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
798572833a62Smarkadams4         /*
798672833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
798772833a62Smarkadams4          */
798872833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
798972833a62Smarkadams4           o_nnz[jj] = 0;
799072833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
799172833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
799272833a62Smarkadams4             o_nnz[jj] += ncols;
799372833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
799472833a62Smarkadams4           }
799572833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
799672833a62Smarkadams4         }
799772833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
799872833a62Smarkadams4       /* get scalar copy (norms) of matrix */
799972833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
800072833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
800172833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
800272833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
800372833a62Smarkadams4         PetscInt dest_row = Ii / bs;
80046497c311SBarry Smith 
800572833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
800672833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
800772833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
800872833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
80096497c311SBarry Smith 
801072833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
801172833a62Smarkadams4         }
801272833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
801372833a62Smarkadams4       }
801472833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
801572833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
801672833a62Smarkadams4     }
801772833a62Smarkadams4   } else {
80182d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
80192d776b49SBarry Smith     else {
80202d776b49SBarry Smith       Gmat = Amat;
80212d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
80222d776b49SBarry Smith     }
80239371c9d4SSatish Balay     if (isseqaij) {
80249371c9d4SSatish Balay       a = Gmat;
80259371c9d4SSatish Balay       b = NULL;
80269371c9d4SSatish Balay     } else {
802772833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
80289371c9d4SSatish Balay       a             = d->A;
80299371c9d4SSatish Balay       b             = d->B;
803072833a62Smarkadams4     }
80312d776b49SBarry Smith     if (filter >= 0 || scale) {
80322d776b49SBarry Smith       /* take absolute value of each entry */
803372833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
803472833a62Smarkadams4         MatInfo      info;
803572833a62Smarkadams4         PetscScalar *avals;
80366497c311SBarry Smith 
803772833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
803872833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
803972833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
804072833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
804172833a62Smarkadams4       }
804272833a62Smarkadams4     }
80432d776b49SBarry Smith   }
804472833a62Smarkadams4   if (symmetrize) {
8045b94d7dedSBarry Smith     PetscBool isset, issym;
80466497c311SBarry Smith 
8047b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
8048b94d7dedSBarry Smith     if (!isset || !issym) {
804972833a62Smarkadams4       Mat matTrans;
80506497c311SBarry Smith 
805172833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
80521fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
805372833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
805472833a62Smarkadams4     }
805572833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80562d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
805772833a62Smarkadams4   if (scale) {
805872833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
805972833a62Smarkadams4     Vec diag;
80606497c311SBarry Smith 
806172833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
806272833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
806372833a62Smarkadams4     PetscCall(VecReciprocal(diag));
806472833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
806572833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
806672833a62Smarkadams4     PetscCall(VecDestroy(&diag));
806772833a62Smarkadams4   }
806872833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80692d776b49SBarry Smith   if (filter >= 0) {
80702ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80712ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80722d776b49SBarry Smith   }
807372833a62Smarkadams4   *a_Gmat = Gmat;
80743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
807572833a62Smarkadams4 }
807672833a62Smarkadams4 
807772833a62Smarkadams4 /*
807898921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
807998921bdaSJacob Faibussowitsch */
808098921bdaSJacob Faibussowitsch 
808198921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80829566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80839566063dSJacob Faibussowitsch #undef PetscCall
80849371c9d4SSatish Balay #define PetscCall(...) \
80859371c9d4SSatish Balay   do { \
80865f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
808798921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
808898921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
808998921bdaSJacob Faibussowitsch       return; \
809098921bdaSJacob Faibussowitsch     } \
809198921bdaSJacob Faibussowitsch   } while (0)
809298921bdaSJacob Faibussowitsch 
809398921bdaSJacob Faibussowitsch #undef SETERRQ
80949371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80959371c9d4SSatish Balay   do { \
809698921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
809798921bdaSJacob Faibussowitsch     return; \
809898921bdaSJacob Faibussowitsch   } while (0)
809998921bdaSJacob Faibussowitsch 
810098921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
810198921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
810298921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
810398921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
810498921bdaSJacob Faibussowitsch #else
810598921bdaSJacob Faibussowitsch #endif
8106d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8107d71ae5a4SJacob Faibussowitsch {
810898921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
810998921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
811098921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
811198921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
811298921bdaSJacob Faibussowitsch   PetscScalar value;
811398921bdaSJacob Faibussowitsch 
811498921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
811598921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
81165f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
811798921bdaSJacob Faibussowitsch   {
811898921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
811998921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
812098921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
812198921bdaSJacob Faibussowitsch 
812298921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
812398921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
812498921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
812598921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
812698921bdaSJacob Faibussowitsch     MatScalar  *aa;
8127f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
812898921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
812998921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
813098921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
813198921bdaSJacob Faibussowitsch     MatScalar  *ba;
813298921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
813398921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
813498921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
813598921bdaSJacob Faibussowitsch 
813698921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
813798921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
813898921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
813998921bdaSJacob Faibussowitsch 
814098921bdaSJacob Faibussowitsch     PetscFunctionBegin;
81419566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
81429566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
814398921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
814498921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
81456bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
814698921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
814798921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
814898921bdaSJacob Faibussowitsch         lastcol1 = -1;
814998921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
815098921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
815198921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
815298921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
815398921bdaSJacob Faibussowitsch         low1     = 0;
815498921bdaSJacob Faibussowitsch         high1    = nrow1;
815598921bdaSJacob Faibussowitsch         lastcol2 = -1;
815698921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
815798921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
815898921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
815998921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
816098921bdaSJacob Faibussowitsch         low2     = 0;
816198921bdaSJacob Faibussowitsch         high2    = nrow2;
816298921bdaSJacob Faibussowitsch 
816398921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
816498921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
816598921bdaSJacob Faibussowitsch           else value = v[i + j * m];
816698921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
816798921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
816898921bdaSJacob Faibussowitsch             col = in[j] - cstart;
816998921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
817098921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
817198921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
817263a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
817398921bdaSJacob Faibussowitsch           } else {
817498921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
817548a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
817698921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8177eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
817898921bdaSJacob Faibussowitsch               col--;
817998921bdaSJacob Faibussowitsch #else
818098921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
818198921bdaSJacob Faibussowitsch #endif
8182f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
8183eb14dd14SAlex Lindsay                 PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
818498921bdaSJacob Faibussowitsch                 col = in[j];
818598921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
818698921bdaSJacob Faibussowitsch                 B        = aij->B;
818798921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81889371c9d4SSatish Balay                 bimax    = b->imax;
81899371c9d4SSatish Balay                 bi       = b->i;
81909371c9d4SSatish Balay                 bilen    = b->ilen;
81919371c9d4SSatish Balay                 bj       = b->j;
819298921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
819398921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
819498921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
819598921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
819698921bdaSJacob Faibussowitsch                 low2     = 0;
819798921bdaSJacob Faibussowitsch                 high2    = nrow2;
819898921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
819998921bdaSJacob Faibussowitsch                 ba       = b->a;
820098921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
820198921bdaSJacob Faibussowitsch               }
820298921bdaSJacob Faibussowitsch             } else col = in[j];
820398921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
820498921bdaSJacob Faibussowitsch           }
820598921bdaSJacob Faibussowitsch         }
820698921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
820798921bdaSJacob Faibussowitsch         if (roworiented) {
82089566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
820998921bdaSJacob Faibussowitsch         } else {
82109566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
821198921bdaSJacob Faibussowitsch         }
821298921bdaSJacob Faibussowitsch       }
821398921bdaSJacob Faibussowitsch     }
82149566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
82159566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
821698921bdaSJacob Faibussowitsch   }
821798921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
821898921bdaSJacob Faibussowitsch }
821972833a62Smarkadams4 
822098921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
822198921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
822298921bdaSJacob Faibussowitsch  * original definitions */
82239566063dSJacob Faibussowitsch #undef PetscCall
822498921bdaSJacob Faibussowitsch #undef SETERRQ
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