xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision eede4a3f727160250ce1ec46327afa549cd90f45)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
1026cec326SBarry Smith {
1126cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1226cec326SBarry Smith 
1326cec326SBarry Smith   PetscFunctionBegin;
1426cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1526cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1626cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
1726cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
1826cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2026cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2126cec326SBarry Smith #else
2226cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
2326cec326SBarry Smith #endif
2426cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
2526cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
2626cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
2726cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
2826cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
2926cec326SBarry Smith 
3026cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3126cec326SBarry Smith 
3226cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
3326cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
3426cec326SBarry Smith 
3526cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
4126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
4326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
4726cec326SBarry Smith #endif
4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
4926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
5026cec326SBarry Smith #endif
5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
5226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
5326cec326SBarry Smith #endif
5426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
5726cec326SBarry Smith #endif
5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
6026cec326SBarry Smith #endif
6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
6226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
6326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
6426cec326SBarry Smith #endif
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
6926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
7326cec326SBarry Smith #endif
7426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
7626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
7726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
7926cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
8026cec326SBarry Smith }
8126cec326SBarry Smith 
8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
8326cec326SBarry Smith #define TYPE AIJ
8426cec326SBarry Smith #define TYPE_AIJ
8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
8626cec326SBarry Smith #undef TYPE
8726cec326SBarry Smith #undef TYPE_AIJ
8826cec326SBarry Smith 
89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
90d71ae5a4SJacob Faibussowitsch {
918a9c020eSBarry Smith   Mat B;
928a9c020eSBarry Smith 
938a9c020eSBarry Smith   PetscFunctionBegin;
948a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
958a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
968a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
97501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
998a9c020eSBarry Smith }
1008a9c020eSBarry Smith 
101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
102d71ae5a4SJacob Faibussowitsch {
1038a9c020eSBarry Smith   Mat B;
1048a9c020eSBarry Smith 
1058a9c020eSBarry Smith   PetscFunctionBegin;
1068a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1078a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
108501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1108a9c020eSBarry Smith }
1118a9c020eSBarry Smith 
11201bebe75SBarry Smith /*MC
11301bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
11401bebe75SBarry Smith 
11511a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
11611a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
11711a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
11801bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
11901bebe75SBarry Smith   the above preallocation routines for simplicity.
12001bebe75SBarry Smith 
12127430b45SBarry Smith    Options Database Key:
12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
12301bebe75SBarry Smith 
12411a5261eSBarry Smith   Developer Note:
1252ef1f0ffSBarry Smith   Level: beginner
1262ef1f0ffSBarry Smith 
12711a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
12801bebe75SBarry Smith    enough exist.
12901bebe75SBarry Smith 
1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
13101bebe75SBarry Smith M*/
13201bebe75SBarry Smith 
13301bebe75SBarry Smith /*MC
13401bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
13501bebe75SBarry Smith 
13611a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
13711a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
13811a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
13901bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14001bebe75SBarry Smith   the above preallocation routines for simplicity.
14101bebe75SBarry Smith 
14227430b45SBarry Smith    Options Database Key:
14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
14401bebe75SBarry Smith 
14501bebe75SBarry Smith   Level: beginner
14601bebe75SBarry Smith 
1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
14801bebe75SBarry Smith M*/
14901bebe75SBarry Smith 
150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
151d71ae5a4SJacob Faibussowitsch {
152f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
153f74ef234SStefano Zampini 
154f74ef234SStefano Zampini   PetscFunctionBegin;
155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
156b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
157f74ef234SStefano Zampini #endif
1581baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1591baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1603120d049SRichard Tran Mills 
1613120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1623120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1633120d049SRichard Tran Mills    * to differ from the parent matrix. */
1641baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1651baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1663120d049SRichard Tran Mills 
1673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
168f74ef234SStefano Zampini }
169f74ef234SStefano Zampini 
170ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
171d71ae5a4SJacob Faibussowitsch {
17226bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
17326bda2c4Sstefano_zampini 
17426bda2c4Sstefano_zampini   PetscFunctionBegin;
17546533700Sstefano_zampini   if (mat->A) {
1769566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1779566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
17846533700Sstefano_zampini   }
1793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18026bda2c4Sstefano_zampini }
18126bda2c4Sstefano_zampini 
182ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
183d71ae5a4SJacob Faibussowitsch {
18427d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
18527d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
18627d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
18727d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
188ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
18927d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
19027d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
19127d4218bSShri Abhyankar 
19227d4218bSShri Abhyankar   PetscFunctionBegin;
193f4259b30SLisandro Dalcin   *keptrows = NULL;
194ce496241SStefano Zampini 
19527d4218bSShri Abhyankar   ia = a->i;
19627d4218bSShri Abhyankar   ib = b->i;
1979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
1989566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
19927d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
20027d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
20127d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
20227d4218bSShri Abhyankar     if (!na && !nb) {
20327d4218bSShri Abhyankar       cnt++;
20427d4218bSShri Abhyankar       goto ok1;
20527d4218bSShri Abhyankar     }
206ce496241SStefano Zampini     aa = aav + ia[i];
20727d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
20827d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
20927d4218bSShri Abhyankar     }
2108e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
21127d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
21227d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
21327d4218bSShri Abhyankar     }
21427d4218bSShri Abhyankar     cnt++;
21527d4218bSShri Abhyankar   ok1:;
21627d4218bSShri Abhyankar   }
2171c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
218ce496241SStefano Zampini   if (!n0rows) {
2199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2213ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
222ce496241SStefano Zampini   }
2239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
22427d4218bSShri Abhyankar   cnt = 0;
22527d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22627d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22727d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22827d4218bSShri Abhyankar     if (!na && !nb) continue;
229ce496241SStefano Zampini     aa = aav + ia[i];
23027d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
23127d4218bSShri Abhyankar       if (aa[j] != 0.0) {
23227d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23327d4218bSShri Abhyankar         goto ok2;
23427d4218bSShri Abhyankar       }
23527d4218bSShri Abhyankar     }
2368e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23727d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23827d4218bSShri Abhyankar       if (bb[j] != 0.0) {
23927d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
24027d4218bSShri Abhyankar         goto ok2;
24127d4218bSShri Abhyankar       }
24227d4218bSShri Abhyankar     }
24327d4218bSShri Abhyankar   ok2:;
24427d4218bSShri Abhyankar   }
2459566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2469566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2479566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24927d4218bSShri Abhyankar }
25027d4218bSShri Abhyankar 
251ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
252d71ae5a4SJacob Faibussowitsch {
25399e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
25494342113SStefano Zampini   PetscBool   cong;
25599e65526SBarry Smith 
25699e65526SBarry Smith   PetscFunctionBegin;
2579566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
25894342113SStefano Zampini   if (Y->assembled && cong) {
2599566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
26099e65526SBarry Smith   } else {
2619566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
26299e65526SBarry Smith   }
2633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26499e65526SBarry Smith }
26599e65526SBarry Smith 
266ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
267d71ae5a4SJacob Faibussowitsch {
268f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
269f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
270f1f41ecbSJed Brown 
271f1f41ecbSJed Brown   PetscFunctionBegin;
2720298fd71SBarry Smith   *zrows = NULL;
2739566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2749566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
275f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2769566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
278f1f41ecbSJed Brown }
279f1f41ecbSJed Brown 
280ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
281d71ae5a4SJacob Faibussowitsch {
2820716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
283a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
2840716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
2850716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
2860716a85fSBarry Smith   PetscReal         *work;
287ce496241SStefano Zampini   const PetscScalar *dummy;
2880716a85fSBarry Smith 
2890716a85fSBarry Smith   PetscFunctionBegin;
2909566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
2919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
2929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
2939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
2949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
2959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
296857cbf51SRichard Tran Mills   if (type == NORM_2) {
297ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
298ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
299857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
300ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
301ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
302857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
303ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
304ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
305857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
306ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
307ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
308857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
309ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
310ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
311857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
312857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
3131c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3140716a85fSBarry Smith   } else {
3151c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3160716a85fSBarry Smith   }
3179566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
318857cbf51SRichard Tran Mills   if (type == NORM_2) {
319a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
320857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
321a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3220716a85fSBarry Smith   }
3233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3240716a85fSBarry Smith }
3250716a85fSBarry Smith 
326ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
327d71ae5a4SJacob Faibussowitsch {
328e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
329e52d2c62SBarry Smith   IS              sis, gis;
330e52d2c62SBarry Smith   const PetscInt *isis, *igis;
331e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
332e52d2c62SBarry Smith 
333e52d2c62SBarry Smith   PetscFunctionBegin;
3349566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3359566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3369566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3379566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3389566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3399566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
340e52d2c62SBarry Smith 
3419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3429566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3439566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
344e52d2c62SBarry Smith   n = ngis + nsis;
3459566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3469566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
347e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3489566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
349e52d2c62SBarry Smith 
3509566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3519566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3529566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3539566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
355e52d2c62SBarry Smith }
356e52d2c62SBarry Smith 
357dd6ea824SBarry Smith /*
3580f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3599e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3600f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3610f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
36272fa4726SStefano Zampini has an order N integer array but is fast to access.
3639e25ed09SBarry Smith */
364d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
365d71ae5a4SJacob Faibussowitsch {
36644a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
367d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
368dbb450caSBarry Smith 
3693a40ed3dSBarry Smith   PetscFunctionBegin;
37008401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
371aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
372eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
373c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
374b1fc9764SSatish Balay #else
3759566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
376905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
377b1fc9764SSatish Balay #endif
3783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3799e25ed09SBarry Smith }
3809e25ed09SBarry Smith 
381d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
382a8f51744SPierre Jolivet   do { \
383db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
384db4deed7SKarl Rupp     else high1 = nrow1; \
385fd3458f5SBarry Smith     lastcol1 = col; \
386fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
387fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
388fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
389fd3458f5SBarry Smith       else low1 = t; \
390ba4e3ef2SSatish Balay     } \
391fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
392fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
393fd3458f5SBarry Smith       if (rp1[_i] == col) { \
3940c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
3950c0d7e18SFande Kong           ap1[_i] += value; \
3960c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
3970c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
3989371c9d4SSatish Balay         } else ap1[_i] = value; \
39930770e4dSSatish Balay         goto a_noinsert; \
4000520107fSSatish Balay       } \
4010520107fSSatish Balay     } \
4029371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4039371c9d4SSatish Balay       low1  = 0; \
4049371c9d4SSatish Balay       high1 = nrow1; \
4059371c9d4SSatish Balay       goto a_noinsert; \
4069371c9d4SSatish Balay     } \
4079371c9d4SSatish Balay     if (nonew == 1) { \
4089371c9d4SSatish Balay       low1  = 0; \
4099371c9d4SSatish Balay       high1 = nrow1; \
4109371c9d4SSatish Balay       goto a_noinsert; \
4119371c9d4SSatish Balay     } \
41208401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
413fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4149371c9d4SSatish Balay     N = nrow1++ - 1; \
4159371c9d4SSatish Balay     a->nz++; \
4169371c9d4SSatish Balay     high1++; \
4170520107fSSatish Balay     /* shift up all the later entries in this row */ \
4189566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4199566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
420fd3458f5SBarry Smith     rp1[_i] = col; \
421fd3458f5SBarry Smith     ap1[_i] = value; \
422e56f5c9eSBarry Smith     A->nonzerostate++; \
42330770e4dSSatish Balay   a_noinsert:; \
424fd3458f5SBarry Smith     ailen[row] = nrow1; \
425a8f51744SPierre Jolivet   } while (0)
4260a198c4cSBarry Smith 
427d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
428a8f51744SPierre Jolivet   do { \
429db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
430db4deed7SKarl Rupp     else high2 = nrow2; \
431fd3458f5SBarry Smith     lastcol2 = col; \
432fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
433fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
434fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
435fd3458f5SBarry Smith       else low2 = t; \
436ba4e3ef2SSatish Balay     } \
437fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
438fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
439fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4400c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4410c0d7e18SFande Kong           ap2[_i] += value; \
4420c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4439371c9d4SSatish Balay         } else ap2[_i] = value; \
44430770e4dSSatish Balay         goto b_noinsert; \
44530770e4dSSatish Balay       } \
44630770e4dSSatish Balay     } \
4479371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4489371c9d4SSatish Balay       low2  = 0; \
4499371c9d4SSatish Balay       high2 = nrow2; \
4509371c9d4SSatish Balay       goto b_noinsert; \
4519371c9d4SSatish Balay     } \
4529371c9d4SSatish Balay     if (nonew == 1) { \
4539371c9d4SSatish Balay       low2  = 0; \
4549371c9d4SSatish Balay       high2 = nrow2; \
4559371c9d4SSatish Balay       goto b_noinsert; \
4569371c9d4SSatish Balay     } \
45708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
458fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4599371c9d4SSatish Balay     N = nrow2++ - 1; \
4609371c9d4SSatish Balay     b->nz++; \
4619371c9d4SSatish Balay     high2++; \
46230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4639566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4649566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
465fd3458f5SBarry Smith     rp2[_i] = col; \
466fd3458f5SBarry Smith     ap2[_i] = value; \
467e56f5c9eSBarry Smith     B->nonzerostate++; \
46830770e4dSSatish Balay   b_noinsert:; \
469fd3458f5SBarry Smith     bilen[row] = nrow2; \
470a8f51744SPierre Jolivet   } while (0)
47130770e4dSSatish Balay 
472ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
473d71ae5a4SJacob Faibussowitsch {
4742fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4752fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4762fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
477fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4782fd7e33dSBarry Smith 
4792fd7e33dSBarry Smith   PetscFunctionBegin;
4802fd7e33dSBarry Smith   /* code only works for square matrices A */
4812fd7e33dSBarry Smith 
4822fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
4839566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
4842fd7e33dSBarry Smith   row = row - diag;
4852fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
4862fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
4872fd7e33dSBarry Smith   }
488fff043a9SJunchao Zhang   if (l) {
4899566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
4909566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
4919566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
492fff043a9SJunchao Zhang   }
4932fd7e33dSBarry Smith 
4942fd7e33dSBarry Smith   /* diagonal part */
495fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
4969566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
4979566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row])));
4989566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
499fff043a9SJunchao Zhang   }
5002fd7e33dSBarry Smith 
5012fd7e33dSBarry Smith   /* right of diagonal part */
502fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5039566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5049566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5059566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
506fff043a9SJunchao Zhang   }
5073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5082fd7e33dSBarry Smith }
5092fd7e33dSBarry Smith 
510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
511d71ae5a4SJacob Faibussowitsch {
51244a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
513071fcb05SBarry Smith   PetscScalar value = 0.0;
514d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
515d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
516ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5178a729477SBarry Smith 
5180520107fSSatish Balay   /* Some Variables required in the macro */
5194ee7247eSSatish Balay   Mat         A     = aij->A;
5204ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
52157809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
522ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
52330770e4dSSatish Balay   Mat         B                 = aij->B;
52430770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
525d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
526ce496241SStefano Zampini   MatScalar  *aa, *ba;
527fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5288d76821aSHong Zhang   PetscInt    nonew;
529a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5304ee7247eSSatish Balay 
5313a40ed3dSBarry Smith   PetscFunctionBegin;
5329566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5348a729477SBarry Smith   for (i = 0; i < m; i++) {
5355ef9f2a5SBarry Smith     if (im[i] < 0) continue;
53608401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5374b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5384b0e389bSBarry Smith       row      = im[i] - rstart;
539fd3458f5SBarry Smith       lastcol1 = -1;
5408e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5418e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
542fd3458f5SBarry Smith       rmax1    = aimax[row];
543fd3458f5SBarry Smith       nrow1    = ailen[row];
544fd3458f5SBarry Smith       low1     = 0;
545fd3458f5SBarry Smith       high1    = nrow1;
546fd3458f5SBarry Smith       lastcol2 = -1;
5478e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5488e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
549fd3458f5SBarry Smith       rmax2    = bimax[row];
550d498b1e9SBarry Smith       nrow2    = bilen[row];
551fd3458f5SBarry Smith       low2     = 0;
552fd3458f5SBarry Smith       high2    = nrow2;
553fd3458f5SBarry Smith 
5541eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
555071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
556c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
557fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
558fd3458f5SBarry Smith           col   = in[j] - cstart;
5598d76821aSHong Zhang           nonew = a->nonew;
560d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
561f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
562f7d195e4SLawrence Mitchell           continue;
563f7d195e4SLawrence Mitchell         } else {
564f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
565227d817aSBarry Smith           if (mat->was_assembled) {
56648a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
567aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
568eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
569fa46199cSSatish Balay             col--;
570b1fc9764SSatish Balay #else
571905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
572b1fc9764SSatish Balay #endif
573fff043a9SJunchao Zhang             if (col < 0 && !((Mat_SeqAIJ *)(aij->B->data))->nonew) { /* col < 0 means in[j] is a new col for B */
5749566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIAIJ(mat));                 /* Change aij->B from reduced/local format to expanded/global format */
5754b0e389bSBarry Smith               col = in[j];
5769bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
577f9508a3cSSatish Balay               B     = aij->B;
578f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5799371c9d4SSatish Balay               bimax = b->imax;
5809371c9d4SSatish Balay               bi    = b->i;
5819371c9d4SSatish Balay               bilen = b->ilen;
5829371c9d4SSatish Balay               bj    = b->j;
5839371c9d4SSatish Balay               ba    = b->a;
584d498b1e9SBarry Smith               rp2   = bj + bi[row];
585d498b1e9SBarry Smith               ap2   = ba + bi[row];
586d498b1e9SBarry Smith               rmax2 = bimax[row];
587d498b1e9SBarry Smith               nrow2 = bilen[row];
588d498b1e9SBarry Smith               low2  = 0;
589d498b1e9SBarry Smith               high2 = nrow2;
590d0f46423SBarry Smith               bm    = aij->B->rmap->n;
591f9508a3cSSatish Balay               ba    = b->a;
592d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
5930587a0fcSBarry Smith               if (1 == ((Mat_SeqAIJ *)(aij->B->data))->nonew) {
5949566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
59598921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
5960587a0fcSBarry Smith             }
597c48de900SBarry Smith           } else col = in[j];
5988d76821aSHong Zhang           nonew = b->nonew;
599d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
6001eb62cbbSBarry Smith         }
6011eb62cbbSBarry Smith       }
6025ef9f2a5SBarry Smith     } else {
60328b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
60490f02eecSBarry Smith       if (!aij->donotstash) {
6055080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
606d36fbae8SSatish Balay         if (roworiented) {
6078e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
608d36fbae8SSatish Balay         } else {
6098e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6104b0e389bSBarry Smith         }
6111eb62cbbSBarry Smith       }
6128a729477SBarry Smith     }
61390f02eecSBarry Smith   }
6145519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6178a729477SBarry Smith }
6188a729477SBarry Smith 
6192b08fdbeSandi selinger /*
620904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6212b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
622904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6232b08fdbeSandi selinger */
624d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
625d71ae5a4SJacob Faibussowitsch {
626904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
627904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6284cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
629904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
630904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
631904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
632904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
633904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6346dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
635904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
636904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
637904d1e70Sandi selinger 
638904d1e70Sandi selinger   PetscFunctionBegin;
639904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
640904d1e70Sandi selinger   for (j = 0; j < am; j++) {
641904d1e70Sandi selinger     dnz = onz = 0;
642904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6436dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
644904d1e70Sandi selinger       /* If column is in the diagonal */
645904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
646904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
647904d1e70Sandi selinger         dnz++;
648904d1e70Sandi selinger       } else { /* off-diagonal entries */
649904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
650904d1e70Sandi selinger         onz++;
651904d1e70Sandi selinger       }
652904d1e70Sandi selinger     }
653904d1e70Sandi selinger     ailen[j] = dnz;
654904d1e70Sandi selinger     bilen[j] = onz;
655904d1e70Sandi selinger   }
6563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
657904d1e70Sandi selinger }
658904d1e70Sandi selinger 
659904d1e70Sandi selinger /*
660904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
661904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6621de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6631de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6641de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
665904d1e70Sandi selinger */
666d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
667d71ae5a4SJacob Faibussowitsch {
6683a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6693a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6704cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
671e9ede7d0Sandi selinger   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)(aij->A)->data, *aijo = (Mat_SeqAIJ *)(aij->B)->data;
6723a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6733a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6743a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6753a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6763a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6776dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6781de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
679904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
680904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
6813a063d27Sandi selinger 
6823a063d27Sandi selinger   PetscFunctionBegin;
6833a063d27Sandi selinger   /* Iterate over all rows of the matrix */
6843a063d27Sandi selinger   for (j = 0; j < am; j++) {
685904d1e70Sandi selinger     dnz_row = onz_row = 0;
686904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
687904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
688e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
689e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
690ae8e66a0Sandi selinger       /* If column is in the diagonal */
6913a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
692904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
693904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
694904d1e70Sandi selinger         dnz_row++;
695ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
696904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
697904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
698904d1e70Sandi selinger         onz_row++;
6993a063d27Sandi selinger       }
7003a063d27Sandi selinger     }
701904d1e70Sandi selinger     ailen[j] = dnz_row;
702904d1e70Sandi selinger     bilen[j] = onz_row;
7033a063d27Sandi selinger   }
7043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7053a063d27Sandi selinger }
7063a063d27Sandi selinger 
707ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
708d71ae5a4SJacob Faibussowitsch {
709b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
710d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
711d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
712b49de8d1SLois Curfman McInnes 
7133a40ed3dSBarry Smith   PetscFunctionBegin;
714b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
71554c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
71654c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
71785835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
718b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
719b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
72054c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
72154c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
722b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
723b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7249566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
725fa852ad4SSatish Balay       } else {
72648a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
727aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
728eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
729fa46199cSSatish Balay         col--;
730b1fc9764SSatish Balay #else
731905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
732b1fc9764SSatish Balay #endif
733e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
73448a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
735b49de8d1SLois Curfman McInnes       }
736b49de8d1SLois Curfman McInnes     }
737b49de8d1SLois Curfman McInnes   }
7383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
739b49de8d1SLois Curfman McInnes }
740bc5ccf88SSatish Balay 
741ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
742d71ae5a4SJacob Faibussowitsch {
743bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
744b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
745bc5ccf88SSatish Balay 
746bc5ccf88SSatish Balay   PetscFunctionBegin;
7473ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
748bc5ccf88SSatish Balay 
7499566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7509566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7519566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
753bc5ccf88SSatish Balay }
754bc5ccf88SSatish Balay 
755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
756d71ae5a4SJacob Faibussowitsch {
757bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
758b1d57f15SBarry Smith   PetscMPIInt  n;
759b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
760e44c0bd4SBarry Smith   PetscInt    *row, *col;
761ace3abfcSBarry Smith   PetscBool    other_disassembled;
76287828ca2SBarry Smith   PetscScalar *val;
763bc5ccf88SSatish Balay 
76491c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7656e111a19SKarl Rupp 
766bc5ccf88SSatish Balay   PetscFunctionBegin;
7674cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
768a2d1c673SSatish Balay     while (1) {
7699566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
770a2d1c673SSatish Balay       if (!flg) break;
771a2d1c673SSatish Balay 
772bc5ccf88SSatish Balay       for (i = 0; i < n;) {
773bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7742205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7752205254eSKarl Rupp           if (row[j] != rstart) break;
7762205254eSKarl Rupp         }
777bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
778bc5ccf88SSatish Balay         else ncols = n - i;
779bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7809566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
781bc5ccf88SSatish Balay         i = j;
782bc5ccf88SSatish Balay       }
783bc5ccf88SSatish Balay     }
7849566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
785bc5ccf88SSatish Balay   }
7868c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
787c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
7889ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
7899ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
7909566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
7919566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
7929ecce9b1SRichard Tran Mills   }
793e2cf4d64SStefano Zampini #endif
7949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
7959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
796bc5ccf88SSatish Balay 
797bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
798071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
799bc5ccf88SSatish Balay   /*
800bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
801bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
802bc5ccf88SSatish Balay   */
803bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
8045f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
80535cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
8069566063dSJacob Faibussowitsch       PetscCall(MatDisAssemble_MPIAIJ(mat));
807ad59fb31SSatish Balay     }
808ad59fb31SSatish Balay   }
80948a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8109566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8118c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
812c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
813e2cf4d64SStefano Zampini #endif
8149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
816bc5ccf88SSatish Balay 
8179566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8182205254eSKarl Rupp 
819f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
820a30b2313SHong Zhang 
8219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
822e56f5c9eSBarry Smith 
8234f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8244f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)(aij->A->data))->nonew) {
825e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
8261c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
827e56f5c9eSBarry Smith   }
8288c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
829c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
830e2cf4d64SStefano Zampini #endif
8313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
832bc5ccf88SSatish Balay }
833bc5ccf88SSatish Balay 
834ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
835d71ae5a4SJacob Faibussowitsch {
83644a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8373a40ed3dSBarry Smith 
8383a40ed3dSBarry Smith   PetscFunctionBegin;
8399566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8409566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8421eb62cbbSBarry Smith }
8431eb62cbbSBarry Smith 
844ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
845d71ae5a4SJacob Faibussowitsch {
8461b1dd7adSMatthew G. Knepley   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)A->data;
847a92ad425SStefano Zampini   PetscObjectState sA, sB;
8481b1dd7adSMatthew G. Knepley   PetscInt        *lrows;
8496e520ac8SStefano Zampini   PetscInt         r, len;
850a92ad425SStefano Zampini   PetscBool        cong, lch, gch;
8511eb62cbbSBarry Smith 
8523a40ed3dSBarry Smith   PetscFunctionBegin;
8536e520ac8SStefano Zampini   /* get locally owned rows */
8549566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8559566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
85697b48c8fSBarry Smith   /* fix right hand side if needed */
85797b48c8fSBarry Smith   if (x && b) {
8581b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8591b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8601b1dd7adSMatthew G. Knepley 
86128b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8629566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8639566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8641b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8659566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8669566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
86797b48c8fSBarry Smith   }
868a92ad425SStefano Zampini 
869a92ad425SStefano Zampini   sA = mat->A->nonzerostate;
870a92ad425SStefano Zampini   sB = mat->B->nonzerostate;
871a92ad425SStefano Zampini 
872a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8739566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8749566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
875a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
876a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
877a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
878a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
879a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
880a92ad425SStefano Zampini 
881a92ad425SStefano Zampini     nnwA = aijA->nonew;
882a92ad425SStefano Zampini     nnwB = aijB->nonew;
883a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
884a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
885a92ad425SStefano Zampini     if (!nnzA) {
8869566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
887a92ad425SStefano Zampini       aijA->nonew = 0;
888a92ad425SStefano Zampini     }
889a92ad425SStefano Zampini     if (!nnzB) {
8909566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
891a92ad425SStefano Zampini       aijB->nonew = 0;
892a92ad425SStefano Zampini     }
893a92ad425SStefano Zampini     /* Must zero here before the next loop */
8949566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
8959566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
8961b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
8971b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
898a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
8999566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
900e2d53e46SBarry Smith     }
901a92ad425SStefano Zampini     aijA->nonew = nnwA;
902a92ad425SStefano Zampini     aijB->nonew = nnwB;
9036eb55b6aSBarry Smith   } else {
9049566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9059566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9066eb55b6aSBarry Smith   }
9079566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9099566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9104f9cfa9eSBarry Smith 
911a92ad425SStefano Zampini   /* reduce nonzerostate */
912a92ad425SStefano Zampini   lch = (PetscBool)(sA != mat->A->nonzerostate || sB != mat->B->nonzerostate);
9131c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lch, &gch, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)A)));
914a92ad425SStefano Zampini   if (gch) A->nonzerostate++;
9153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9161eb62cbbSBarry Smith }
9171eb62cbbSBarry Smith 
918ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
919d71ae5a4SJacob Faibussowitsch {
9209c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9215ba17502SJed Brown   PetscMPIInt        n = A->rmap->n;
922131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
92354bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
924131c27b5Sprj-   PetscMPIInt        p = 0;
92554bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
92654bd4135SMatthew G. Knepley   PetscSF            sf;
9279c7c4993SBarry Smith   const PetscScalar *xx;
928fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
929564f14d6SBarry Smith   Vec                xmask, lmask;
930564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
931564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
932564f14d6SBarry Smith   PetscScalar       *aa;
9339c7c4993SBarry Smith 
9349c7c4993SBarry Smith   PetscFunctionBegin;
93554bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
93754bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9389566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
93954bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
94054bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
941aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9425ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9439566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9445ba17502SJed Brown     }
94554bd4135SMatthew G. Knepley     rrows[r].rank  = p;
94654bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9479c7c4993SBarry Smith   }
9489566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9499566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
95054bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9519566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9529566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9539566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
95454bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9559371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9569371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
957564f14d6SBarry Smith   /* zero diagonal part of matrix */
9589566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9594cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9609566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9619566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9629566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
96354bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9649566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9659566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9669566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9679566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
968a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
969a92ad425SStefano Zampini     PetscBool cong;
970a92ad425SStefano Zampini 
9719566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
97228b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9739566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9749566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9759566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9769566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
977377aa5a1SBarry Smith   }
9789566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9794cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9809566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
981564f14d6SBarry Smith   ii = aij->i;
9828e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
983564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
984564f14d6SBarry Smith   if (aij->compressedrow.use) {
985564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
986564f14d6SBarry Smith     ii   = aij->compressedrow.i;
987564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
988564f14d6SBarry Smith     for (i = 0; i < m; i++) {
989564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
990564f14d6SBarry Smith       aj = aij->j + ii[i];
991fff043a9SJunchao Zhang       aa = aij_a + ii[i];
992564f14d6SBarry Smith 
993564f14d6SBarry Smith       for (j = 0; j < n; j++) {
99425266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
995377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
996564f14d6SBarry Smith           *aa = 0.0;
997564f14d6SBarry Smith         }
998564f14d6SBarry Smith         aa++;
999564f14d6SBarry Smith         aj++;
1000564f14d6SBarry Smith       }
1001564f14d6SBarry Smith       ridx++;
1002564f14d6SBarry Smith     }
1003564f14d6SBarry Smith   } else { /* do not use compressed row format */
1004564f14d6SBarry Smith     m = l->B->rmap->n;
1005564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1006564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1007564f14d6SBarry Smith       aj = aij->j + ii[i];
1008fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1009564f14d6SBarry Smith       for (j = 0; j < n; j++) {
101025266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1011377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1012564f14d6SBarry Smith           *aa = 0.0;
1013564f14d6SBarry Smith         }
1014564f14d6SBarry Smith         aa++;
1015564f14d6SBarry Smith         aj++;
1016564f14d6SBarry Smith       }
1017564f14d6SBarry Smith     }
1018564f14d6SBarry Smith   }
1019a92ad425SStefano Zampini   if (x && b) {
10209566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10219566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1022377aa5a1SBarry Smith   }
10239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10249566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10259566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10269566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10274f9cfa9eSBarry Smith 
10284f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
10294f9cfa9eSBarry Smith   if (!((Mat_SeqAIJ *)(l->A->data))->keepnonzeropattern) {
10304f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
10311c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10324f9cfa9eSBarry Smith   }
10333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10349c7c4993SBarry Smith }
10359c7c4993SBarry Smith 
1036ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1037d71ae5a4SJacob Faibussowitsch {
1038416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1039b1d57f15SBarry Smith   PetscInt    nt;
104019b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1041416022c9SBarry Smith 
10423a40ed3dSBarry Smith   PetscFunctionBegin;
10439566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
104408401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10459566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1046296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10479566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1048296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10501eb62cbbSBarry Smith }
10511eb62cbbSBarry Smith 
1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1053d71ae5a4SJacob Faibussowitsch {
1054bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1055bd0c2dcbSBarry Smith 
1056bd0c2dcbSBarry Smith   PetscFunctionBegin;
10579566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1059bd0c2dcbSBarry Smith }
1060bd0c2dcbSBarry Smith 
1061ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1062d71ae5a4SJacob Faibussowitsch {
1063416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
106401ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10653a40ed3dSBarry Smith 
10663a40ed3dSBarry Smith   PetscFunctionBegin;
10679566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10689566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10699566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10709566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1072da3a660dSBarry Smith }
1073da3a660dSBarry Smith 
1074ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1075d71ae5a4SJacob Faibussowitsch {
1076416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1077da3a660dSBarry Smith 
10783a40ed3dSBarry Smith   PetscFunctionBegin;
1079da3a660dSBarry Smith   /* do nondiagonal part */
10809566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1081da3a660dSBarry Smith   /* do local part */
10829566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10839613dc34SJunchao Zhang   /* add partial results together */
10849566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10859566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1087da3a660dSBarry Smith }
1088da3a660dSBarry Smith 
1089ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1090d71ae5a4SJacob Faibussowitsch {
10914f423910Svictorle   MPI_Comm    comm;
1092ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1093ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1094cd0d46ebSvictorle   IS          Me, Notme;
1095b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
109654d735aeSStefano Zampini   PetscBool   lf;
1097b1d57f15SBarry Smith   PetscMPIInt size;
1098cd0d46ebSvictorle 
1099cd0d46ebSvictorle   PetscFunctionBegin;
110042e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
11019566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
11021c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
11033ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11049566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11063ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
110742e5f5b4Svictorle 
11087dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11099566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11109566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1112cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1113cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11149566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11159566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11169566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
111766501d38Svictorle   Aoff = Aoffs[0];
11189566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
111966501d38Svictorle   Boff = Boffs[0];
11209566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11219566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11229566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11239566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11249566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11259566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1127cd0d46ebSvictorle }
1128cd0d46ebSvictorle 
1129ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsSymmetric_MPIAIJ(Mat A, PetscReal tol, PetscBool *f)
1130d71ae5a4SJacob Faibussowitsch {
1131a3bbdb47SHong Zhang   PetscFunctionBegin;
11329566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose_MPIAIJ(A, A, tol, f));
11333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1134a3bbdb47SHong Zhang }
1135a3bbdb47SHong Zhang 
1136ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1137d71ae5a4SJacob Faibussowitsch {
1138416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1139da3a660dSBarry Smith 
11403a40ed3dSBarry Smith   PetscFunctionBegin;
1141da3a660dSBarry Smith   /* do nondiagonal part */
11429566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1143da3a660dSBarry Smith   /* do local part */
11449566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11459613dc34SJunchao Zhang   /* add partial results together */
11469566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11479566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1149da3a660dSBarry Smith }
1150da3a660dSBarry Smith 
11511eb62cbbSBarry Smith /*
11521eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11531eb62cbbSBarry Smith    diagonal block
11541eb62cbbSBarry Smith */
1155ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1156d71ae5a4SJacob Faibussowitsch {
1157416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11583a40ed3dSBarry Smith 
11593a40ed3dSBarry Smith   PetscFunctionBegin;
116008401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1161aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11629566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11641eb62cbbSBarry Smith }
11651eb62cbbSBarry Smith 
1166ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1167d71ae5a4SJacob Faibussowitsch {
1168052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11693a40ed3dSBarry Smith 
11703a40ed3dSBarry Smith   PetscFunctionBegin;
11719566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11729566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1174052efed2SBarry Smith }
1175052efed2SBarry Smith 
1176ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1177d71ae5a4SJacob Faibussowitsch {
11788e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11798e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11808e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11813ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11822e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
118317a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
118417a3732bSBarry Smith   PetscInt64         nz, hnz;
11853ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11863ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11873ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
118817a3732bSBarry Smith   PetscMPIInt        rank;
11898e2fed03SBarry Smith 
11908e2fed03SBarry Smith   PetscFunctionBegin;
11919566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
11923ea6fe3dSLisandro Dalcin 
11933ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
11943ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
11953ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
11963ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
11973ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
11988e2fed03SBarry Smith   nz = A->nz + B->nz;
11993ea6fe3dSLisandro Dalcin 
12003ea6fe3dSLisandro Dalcin   /* write matrix header */
12010700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
12029371c9d4SSatish Balay   header[1] = M;
12039371c9d4SSatish Balay   header[2] = N;
120417a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
120517a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
120638b83642SBarry Smith   if (rank == 0) {
120738b83642SBarry Smith     if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT;
120838b83642SBarry Smith     else header[3] = (PetscInt)hnz;
120938b83642SBarry Smith   }
12109566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12118e2fed03SBarry Smith 
12123ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12139566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12143ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12159566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12169566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12178e2fed03SBarry Smith 
12183ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12203ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12213ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12223ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12233ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12248e2fed03SBarry Smith     }
12259371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12269371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12278e2fed03SBarry Smith   }
122817a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12299566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12309566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12318e2fed03SBarry Smith 
12323ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12363ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12373ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12383ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12392e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12408e2fed03SBarry Smith     }
12419371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12429371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12438e2fed03SBarry Smith   }
12449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
124617a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12479566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12489566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12498e2fed03SBarry Smith 
12503ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12519566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12538e2fed03SBarry Smith }
12548e2fed03SBarry Smith 
12559804daf3SBarry Smith #include <petscdraw.h>
1256ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1257d71ae5a4SJacob Faibussowitsch {
125844a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
125932dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1260ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1261b0a32e0cSBarry Smith   PetscViewer       sviewer;
1262f3ef73ceSBarry Smith   PetscViewerFormat format;
1263416022c9SBarry Smith 
12643a40ed3dSBarry Smith   PetscFunctionBegin;
12659566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12669566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12679566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
126832077d6dSBarry Smith   if (iascii) {
12699566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1270ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
1271ef5fdb51SBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)(aij->A->data))->nz + ((Mat_SeqAIJ *)(aij->B->data))->nz;
12729566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12739566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1274ef5fdb51SBarry Smith       for (i = 0; i < (PetscInt)size; i++) {
1275ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1276ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1277ef5fdb51SBarry Smith         navg += nz[i];
1278ef5fdb51SBarry Smith       }
12799566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1280ef5fdb51SBarry Smith       navg = navg / size;
12819566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12823ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1283ef5fdb51SBarry Smith     }
12849566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1285456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12864e220ebcSLois Curfman McInnes       MatInfo   info;
12876335e310SSatish Balay       PetscInt *inodes = NULL;
1288923f20ffSKris Buschelman 
12899566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12909566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12919566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12929566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1293923f20ffSKris Buschelman       if (!inodes) {
12949371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12959371c9d4SSatish Balay                                                      (double)info.memory));
12966831982aSBarry Smith       } else {
12979371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12989371c9d4SSatish Balay                                                      (double)info.memory));
12996831982aSBarry Smith       }
13009566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
13019566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13029566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
13039566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13049566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
13059566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
13069566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
13079566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
13083ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1309fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1310923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13119566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1312923f20ffSKris Buschelman       if (inodes) {
13139566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1314d38fa0fbSBarry Smith       } else {
13159566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1316d38fa0fbSBarry Smith       }
13173ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13184aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13193ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
132008480c60SBarry Smith     }
13218e2fed03SBarry Smith   } else if (isbinary) {
13228e2fed03SBarry Smith     if (size == 1) {
13239566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13249566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13258e2fed03SBarry Smith     } else {
13269566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13278e2fed03SBarry Smith     }
13283ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
132971e56450SStefano Zampini   } else if (iascii && size == 1) {
13309566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13319566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13323ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13330f5bd95cSBarry Smith   } else if (isdraw) {
1334b0a32e0cSBarry Smith     PetscDraw draw;
1335ace3abfcSBarry Smith     PetscBool isnull;
13369566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13379566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13383ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
133919bcc07fSBarry Smith   }
134019bcc07fSBarry Smith 
134171e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
134271e56450SStefano Zampini     Mat A = NULL, Av;
134371e56450SStefano Zampini     IS  isrow, iscol;
13442ee70a88SLois Curfman McInnes 
13459566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13469566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13479566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13489566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
134971e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
135071e56450SStefano Zampini     /*
135171e56450SStefano Zampini     Mat *AA, A = NULL, Av;
135271e56450SStefano Zampini     IS  isrow,iscol;
135371e56450SStefano Zampini 
13549566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13559566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13569566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1357dd400576SPatrick Sanan     if (rank == 0) {
13589566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
135971e56450SStefano Zampini        A    = AA[0];
136071e56450SStefano Zampini        Av   = AA[0];
136195373324SBarry Smith     }
13629566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
136371e56450SStefano Zampini */
13649566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13659566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
136655843e3eSBarry Smith     /*
136755843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1368b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
136955843e3eSBarry Smith     */
13709566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1371dd400576SPatrick Sanan     if (rank == 0) {
137248a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13739566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
137495373324SBarry Smith     }
13759566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13769566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
137795373324SBarry Smith   }
13783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13791eb62cbbSBarry Smith }
13801eb62cbbSBarry Smith 
1381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1382d71ae5a4SJacob Faibussowitsch {
1383ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1384416022c9SBarry Smith 
13853a40ed3dSBarry Smith   PetscFunctionBegin;
13869566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13879566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13889566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13899566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
139048a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1392416022c9SBarry Smith }
1393416022c9SBarry Smith 
1394ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1395d71ae5a4SJacob Faibussowitsch {
139644a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1397f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1398ace3abfcSBarry Smith   PetscBool   hasop;
13998a729477SBarry Smith 
14003a40ed3dSBarry Smith   PetscFunctionBegin;
1401a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
14029566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14033ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1404a2b30743SBarry Smith   }
1405a2b30743SBarry Smith 
140648a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
14074e980039SJed Brown 
1408c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1409da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14109566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14112798e883SHong Zhang       its--;
1412da3a660dSBarry Smith     }
14132798e883SHong Zhang 
14142798e883SHong Zhang     while (its--) {
14159566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14169566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14172798e883SHong Zhang 
1418c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14199566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14209566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14212798e883SHong Zhang 
1422c14dc6b6SHong Zhang       /* local sweep */
14239566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14242798e883SHong Zhang     }
14253a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1426da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14279566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14282798e883SHong Zhang       its--;
1429da3a660dSBarry Smith     }
14302798e883SHong Zhang     while (its--) {
14319566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14329566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14332798e883SHong Zhang 
1434c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14359566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14369566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1437c14dc6b6SHong Zhang 
1438c14dc6b6SHong Zhang       /* local sweep */
14399566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14402798e883SHong Zhang     }
14413a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1442da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14439566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14442798e883SHong Zhang       its--;
1445da3a660dSBarry Smith     }
14462798e883SHong Zhang     while (its--) {
14479566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14489566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14492798e883SHong Zhang 
1450c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14519566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14529566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14532798e883SHong Zhang 
1454c14dc6b6SHong Zhang       /* local sweep */
14559566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14562798e883SHong Zhang     }
1457a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1458a7420bb7SBarry Smith     Vec xx1;
1459a7420bb7SBarry Smith 
14609566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14619566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1462a7420bb7SBarry Smith 
14639566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14649566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1465a7420bb7SBarry Smith     if (!mat->diag) {
14669566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14679566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1468a7420bb7SBarry Smith     }
14699566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1470bd0c2dcbSBarry Smith     if (hasop) {
14719566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1472bd0c2dcbSBarry Smith     } else {
14739566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1474bd0c2dcbSBarry Smith     }
14759566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1476887ee2caSBarry Smith 
14779566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1478a7420bb7SBarry Smith 
1479a7420bb7SBarry Smith     /* local sweep */
14809566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14819566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14829566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1483ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1484c14dc6b6SHong Zhang 
14859566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1486a0808db4SHong Zhang 
14877b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14898a729477SBarry Smith }
1490a66be287SLois Curfman McInnes 
1491ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1492d71ae5a4SJacob Faibussowitsch {
149372e6a0cfSJed Brown   Mat             aA, aB, Aperm;
149472e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
149572e6a0cfSJed Brown   PetscScalar    *aa, *ba;
149672e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
149772e6a0cfSJed Brown   PetscSF         rowsf, sf;
14980298fd71SBarry Smith   IS              parcolp = NULL;
149972e6a0cfSJed Brown   PetscBool       done;
150042e855d1Svictor 
150142e855d1Svictor   PetscFunctionBegin;
15029566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
15039566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
15049566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
15059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
150672e6a0cfSJed Brown 
150772e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
15089566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
15099566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
15109566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
151172e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15129566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15139566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
151472e6a0cfSJed Brown 
151572e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15169566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15179566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
151972e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15209566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15219566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152372e6a0cfSJed Brown 
15249566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15259566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15269566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
152772e6a0cfSJed Brown 
152872e6a0cfSJed Brown   /* Find out where my gcols should go */
15299566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15319566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15329566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15339566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15349566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15359566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15369566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
153772e6a0cfSJed Brown 
15389566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15399566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15409566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
154172e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1542131c27b5Sprj-     PetscInt    row = rdest[i];
1543131c27b5Sprj-     PetscMPIInt rowner;
15449566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
154572e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1546131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1547131c27b5Sprj-       PetscMPIInt cowner;
15489566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
154972e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155072e6a0cfSJed Brown       else onnz[i]++;
155172e6a0cfSJed Brown     }
155272e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1553131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1554131c27b5Sprj-       PetscMPIInt cowner;
15559566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
155672e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155772e6a0cfSJed Brown       else onnz[i]++;
155872e6a0cfSJed Brown     }
155972e6a0cfSJed Brown   }
15609566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15619566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15629566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15639566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15649566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
156572e6a0cfSJed Brown 
15669566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
156972e6a0cfSJed Brown   for (i = 0; i < m; i++) {
157072e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1571970468b0SJed Brown     PetscInt  j0, rowlen;
157272e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1573970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1574970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15759566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1576970468b0SJed Brown     }
157772e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1578970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1579970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15809566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1581970468b0SJed Brown     }
158272e6a0cfSJed Brown   }
15839566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15849566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15859566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15869566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15879566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15889566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15899566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15909566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15919566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15929566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
159372e6a0cfSJed Brown   *B = Aperm;
15943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
159542e855d1Svictor }
159642e855d1Svictor 
1597ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1598d71ae5a4SJacob Faibussowitsch {
1599c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1600c5e4d11fSDmitry Karpeev 
1601c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
16029566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1603c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
16043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1605c5e4d11fSDmitry Karpeev }
1606c5e4d11fSDmitry Karpeev 
1607ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1608d71ae5a4SJacob Faibussowitsch {
1609a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1610a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16113966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1612a66be287SLois Curfman McInnes 
16133a40ed3dSBarry Smith   PetscFunctionBegin;
16144e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16159566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16162205254eSKarl Rupp 
16179371c9d4SSatish Balay   isend[0] = info->nz_used;
16189371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16199371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16209371c9d4SSatish Balay   isend[3] = info->memory;
16219371c9d4SSatish Balay   isend[4] = info->mallocs;
16222205254eSKarl Rupp 
16239566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16242205254eSKarl Rupp 
16259371c9d4SSatish Balay   isend[0] += info->nz_used;
16269371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16279371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16289371c9d4SSatish Balay   isend[3] += info->memory;
16299371c9d4SSatish Balay   isend[4] += info->mallocs;
1630a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16314e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16324e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16334e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16344e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16354e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1636a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
16371c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16382205254eSKarl Rupp 
16394e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16404e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16414e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16424e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16434e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1644a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
16451c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16462205254eSKarl Rupp 
16474e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16484e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16494e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16504e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16514e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1652a66be287SLois Curfman McInnes   }
16534e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16544e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16554e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1657a66be287SLois Curfman McInnes }
1658a66be287SLois Curfman McInnes 
1659d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1660d71ae5a4SJacob Faibussowitsch {
1661c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1662c74985f6SBarry Smith 
16633a40ed3dSBarry Smith   PetscFunctionBegin;
166412c028f9SKris Buschelman   switch (op) {
1665512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
166612c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
166728b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1668a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
166912c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16700ad02fcaSStefano Zampini   case MAT_USE_INODES:
167112c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16721a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1673fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16749566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16759566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
167612c028f9SKris Buschelman     break;
167712c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
167843674050SBarry Smith     MatCheckPreallocated(A, 1);
16794e0d8c25SBarry Smith     a->roworiented = flg;
16802205254eSKarl Rupp 
16819566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16829566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168312c028f9SKris Buschelman     break;
16848c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1685d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1686d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1687d71ae5a4SJacob Faibussowitsch     break;
1688d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1689d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1690d71ae5a4SJacob Faibussowitsch     break;
1691c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1692ffa07934SHong Zhang   case MAT_SPD:
169377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
169477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1695bf108f30SBarry Smith   case MAT_HERMITIAN:
1696bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1697b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1698b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1699b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
170077e54ba9SKris Buschelman     break;
1701d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1702d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1703d71ae5a4SJacob Faibussowitsch     break;
1704957cac9fSHong Zhang   case MAT_STRUCTURE_ONLY:
1705957cac9fSHong Zhang     /* The option is handled directly by MatSetOption() */
1706957cac9fSHong Zhang     break;
1707d71ae5a4SJacob Faibussowitsch   default:
1708d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
17093a40ed3dSBarry Smith   }
17103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1711c74985f6SBarry Smith }
1712c74985f6SBarry Smith 
1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1714d71ae5a4SJacob Faibussowitsch {
1715154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
171687828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1717d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1718d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1719b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
172039e00950SLois Curfman McInnes 
17213a40ed3dSBarry Smith   PetscFunctionBegin;
172228b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17237a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17247a0afa10SBarry Smith 
172570f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17267a0afa10SBarry Smith     /*
17277a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17287a0afa10SBarry Smith     */
17297a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1730b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1731d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17327a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17332205254eSKarl Rupp       if (max < tmp) max = tmp;
17347a0afa10SBarry Smith     }
17359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17367a0afa10SBarry Smith   }
17377a0afa10SBarry Smith 
1738aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1739abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
174039e00950SLois Curfman McInnes 
17419371c9d4SSatish Balay   pvA = &vworkA;
17429371c9d4SSatish Balay   pcA = &cworkA;
17439371c9d4SSatish Balay   pvB = &vworkB;
17449371c9d4SSatish Balay   pcB = &cworkB;
17459371c9d4SSatish Balay   if (!v) {
17469371c9d4SSatish Balay     pvA = NULL;
17479371c9d4SSatish Balay     pvB = NULL;
17489371c9d4SSatish Balay   }
17499371c9d4SSatish Balay   if (!idx) {
17509371c9d4SSatish Balay     pcA = NULL;
17519371c9d4SSatish Balay     if (!v) pcB = NULL;
17529371c9d4SSatish Balay   }
17539566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17549566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1755154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1756154123eaSLois Curfman McInnes 
175770f0671dSBarry Smith   cmap = mat->garray;
1758154123eaSLois Curfman McInnes   if (v || idx) {
1759154123eaSLois Curfman McInnes     if (nztot) {
1760154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1761b1d57f15SBarry Smith       PetscInt imark = -1;
1762154123eaSLois Curfman McInnes       if (v) {
176370f0671dSBarry Smith         *v = v_p = mat->rowvalues;
176439e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
176570f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1766154123eaSLois Curfman McInnes           else break;
1767154123eaSLois Curfman McInnes         }
1768154123eaSLois Curfman McInnes         imark = i;
176970f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
177070f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1771154123eaSLois Curfman McInnes       }
1772154123eaSLois Curfman McInnes       if (idx) {
177370f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
177470f0671dSBarry Smith         if (imark > -1) {
1775ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
177670f0671dSBarry Smith         } else {
1777154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
177870f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1779154123eaSLois Curfman McInnes             else break;
1780154123eaSLois Curfman McInnes           }
1781154123eaSLois Curfman McInnes           imark = i;
178270f0671dSBarry Smith         }
178370f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
178470f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
178539e00950SLois Curfman McInnes       }
17863f97c4b0SBarry Smith     } else {
1787f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1788f4259b30SLisandro Dalcin       if (v) *v = NULL;
17891ca473b0SSatish Balay     }
1790154123eaSLois Curfman McInnes   }
179139e00950SLois Curfman McInnes   *nz = nztot;
17929566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17939566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179539e00950SLois Curfman McInnes }
179639e00950SLois Curfman McInnes 
1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1798d71ae5a4SJacob Faibussowitsch {
17997a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
18003a40ed3dSBarry Smith 
18013a40ed3dSBarry Smith   PetscFunctionBegin;
180228b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
18037a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
18043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
180539e00950SLois Curfman McInnes }
180639e00950SLois Curfman McInnes 
1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1808d71ae5a4SJacob Faibussowitsch {
1809855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1810ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1811d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1812329f5518SBarry Smith   PetscReal        sum = 0.0;
1813fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
181404ca555eSLois Curfman McInnes 
18153a40ed3dSBarry Smith   PetscFunctionBegin;
181617699dbbSLois Curfman McInnes   if (aij->size == 1) {
18179566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
181837fa93a5SLois Curfman McInnes   } else {
18199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
182104ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1822fff043a9SJunchao Zhang       v = amata;
182304ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18249371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18259371c9d4SSatish Balay         v++;
182604ca555eSLois Curfman McInnes       }
1827fff043a9SJunchao Zhang       v = bmata;
182804ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18299371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18309371c9d4SSatish Balay         v++;
183104ca555eSLois Curfman McInnes       }
18321c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18338f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18349566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18353a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1836329f5518SBarry Smith       PetscReal *tmp, *tmp2;
1837b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18389566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
18399566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2));
184004ca555eSLois Curfman McInnes       *norm = 0.0;
18419371c9d4SSatish Balay       v     = amata;
18429371c9d4SSatish Balay       jj    = amat->j;
184304ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18449371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18459371c9d4SSatish Balay         v++;
184604ca555eSLois Curfman McInnes       }
18479371c9d4SSatish Balay       v  = bmata;
18489371c9d4SSatish Balay       jj = bmat->j;
184904ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18509371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18519371c9d4SSatish Balay         v++;
185204ca555eSLois Curfman McInnes       }
18531c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1854d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
185504ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
185604ca555eSLois Curfman McInnes       }
18579566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18589566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
18599566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18603a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1861329f5518SBarry Smith       PetscReal ntemp = 0.0;
1862d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18638e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
186404ca555eSLois Curfman McInnes         sum = 0.0;
186504ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18669371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18679371c9d4SSatish Balay           v++;
186804ca555eSLois Curfman McInnes         }
18698e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
187004ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18719371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18729371c9d4SSatish Balay           v++;
187304ca555eSLois Curfman McInnes         }
1874515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
187504ca555eSLois Curfman McInnes       }
18761c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18779566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1878ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18799566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18809566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
188137fa93a5SLois Curfman McInnes   }
18823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1883855ac2c5SLois Curfman McInnes }
1884855ac2c5SLois Curfman McInnes 
1885ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1886d71ae5a4SJacob Faibussowitsch {
1887a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1888a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1889071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1890071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1891a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1892ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1893b7c46309SBarry Smith 
18943a40ed3dSBarry Smith   PetscFunctionBegin;
18957fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18969371c9d4SSatish Balay   ma = A->rmap->n;
18979371c9d4SSatish Balay   na = A->cmap->n;
18989371c9d4SSatish Balay   mb = a->B->rmap->n;
18999371c9d4SSatish Balay   nb = a->B->cmap->n;
19009371c9d4SSatish Balay   ai = Aloc->i;
19019371c9d4SSatish Balay   aj = Aloc->j;
19029371c9d4SSatish Balay   bi = Bloc->i;
19039371c9d4SSatish Balay   bj = Bloc->j;
1904fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
190580bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
190680bcc5a1SJed Brown     PetscSFNode         *oloc;
1907713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
190880bcc5a1SJed Brown 
19099566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
191080bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19119566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1912cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
191380bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19149566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
191580bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
191680bcc5a1SJed Brown     /* map those to global */
19179566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19189566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19199566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19209566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
192157168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
192257168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19239566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1924d4bb536fSBarry Smith 
19259566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19269566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
19279566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs)));
19289566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19299566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19309566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1931fc4dec0aSBarry Smith   } else {
1932fc4dec0aSBarry Smith     B = *matout;
19339566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1934fc4dec0aSBarry Smith   }
1935b7c46309SBarry Smith 
1936f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1937a8661f62Sandi selinger   A_diag      = a->A;
1938a8661f62Sandi selinger   B_diag      = &b->A;
1939a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1940a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1941a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1942a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1943f79cb1a0Sandi selinger 
1944f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1945ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1946f79cb1a0Sandi selinger 
19474cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1948a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19497fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19509566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1951f79cb1a0Sandi selinger 
1952b7c46309SBarry Smith   /* copy over the B part */
19539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19549566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1955ce496241SStefano Zampini   pbv = bv;
1956d0f46423SBarry Smith   row = A->rmap->rstart;
19572205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
195861a2fbbaSHong Zhang   cols_tmp = cols;
1959da668accSHong Zhang   for (i = 0; i < mb; i++) {
1960da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19619566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19622205254eSKarl Rupp     row++;
1963720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1964720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1965b7c46309SBarry Smith   }
19669566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1968fc73b1b3SBarry Smith 
19699566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1971cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19720de55854SLois Curfman McInnes     *matout = B;
19730de55854SLois Curfman McInnes   } else {
19749566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19750de55854SLois Curfman McInnes   }
19763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1977b7c46309SBarry Smith }
1978b7c46309SBarry Smith 
1979ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1980d71ae5a4SJacob Faibussowitsch {
19814b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19824b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1983b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1984a008b906SSatish Balay 
19853a40ed3dSBarry Smith   PetscFunctionBegin;
19869566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19874b967eb1SSatish Balay   if (rr) {
19889566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
198908401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19904b967eb1SSatish Balay     /* Overlap communication with computation. */
19919566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1992a008b906SSatish Balay   }
19934b967eb1SSatish Balay   if (ll) {
19949566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
199508401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1996dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19974b967eb1SSatish Balay   }
19984b967eb1SSatish Balay   /* scale  the diagonal block */
1999dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
20004b967eb1SSatish Balay 
20014b967eb1SSatish Balay   if (rr) {
20024b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
20039566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
2004dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
20054b967eb1SSatish Balay   }
20063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2007a008b906SSatish Balay }
2008a008b906SSatish Balay 
2009ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2010d71ae5a4SJacob Faibussowitsch {
2011bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20123a40ed3dSBarry Smith 
20133a40ed3dSBarry Smith   PetscFunctionBegin;
20149566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2016bb5a7306SBarry Smith }
2017bb5a7306SBarry Smith 
2018ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2019d71ae5a4SJacob Faibussowitsch {
2020d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2021d4bb536fSBarry Smith   Mat         a, b, c, d;
2022ace3abfcSBarry Smith   PetscBool   flg;
2023d4bb536fSBarry Smith 
20243a40ed3dSBarry Smith   PetscFunctionBegin;
20259371c9d4SSatish Balay   a = matA->A;
20269371c9d4SSatish Balay   b = matA->B;
20279371c9d4SSatish Balay   c = matB->A;
20289371c9d4SSatish Balay   d = matB->B;
2029d4bb536fSBarry Smith 
20309566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
203148a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
20321c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2034d4bb536fSBarry Smith }
2035d4bb536fSBarry Smith 
2036ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2037d71ae5a4SJacob Faibussowitsch {
2038cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2039cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2040cb5b572fSBarry Smith 
2041cb5b572fSBarry Smith   PetscFunctionBegin;
204233f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
204333f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2044cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2045cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2046cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2047cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2048cb5b572fSBarry Smith        then copying the submatrices */
20499566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2050cb5b572fSBarry Smith   } else {
20519566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20529566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2053cb5b572fSBarry Smith   }
20549566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2056cb5b572fSBarry Smith }
2057cb5b572fSBarry Smith 
2058001ddc4fSHong Zhang /*
2059001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2060001ddc4fSHong Zhang    have different nonzero structure.
2061001ddc4fSHong Zhang */
2062d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2063d71ae5a4SJacob Faibussowitsch {
2064001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
206595b7e79eSJed Brown 
206695b7e79eSJed Brown   PetscFunctionBegin;
206795b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
206895b7e79eSJed Brown   for (i = 0; i < m; i++) {
20698e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2070001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2071001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
207295b7e79eSJed Brown     nnz[i] = 0;
207395b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2074001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2075001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
207695b7e79eSJed Brown       nnz[i]++;
207795b7e79eSJed Brown     }
207895b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
207995b7e79eSJed Brown   }
20803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
208195b7e79eSJed Brown }
208295b7e79eSJed Brown 
2083001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2084d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2085d71ae5a4SJacob Faibussowitsch {
2086001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2087001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2088001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2089001ddc4fSHong Zhang 
2090001ddc4fSHong Zhang   PetscFunctionBegin;
20919566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2093001ddc4fSHong Zhang }
2094001ddc4fSHong Zhang 
2095ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2096d71ae5a4SJacob Faibussowitsch {
2097ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2098ac90fabeSBarry Smith 
2099ac90fabeSBarry Smith   PetscFunctionBegin;
2100ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
21019566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
21029566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2103ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
21049566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2105ac90fabeSBarry Smith   } else {
21069f5f6813SShri Abhyankar     Mat       B;
21079f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2108d9d719b4SStefano Zampini 
21099566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21109566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21119566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21129566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21139566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21149566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21159566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21169566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21179566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21189566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21199566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21209566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21219566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2122ac90fabeSBarry Smith   }
21233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2124ac90fabeSBarry Smith }
2125ac90fabeSBarry Smith 
21262726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2127354c94deSBarry Smith 
2128ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2129d71ae5a4SJacob Faibussowitsch {
21305f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21315f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2132354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2133354c94deSBarry Smith 
21349566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21359566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21365f80ce2aSJacob Faibussowitsch   }
21373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2138354c94deSBarry Smith }
2139354c94deSBarry Smith 
2140ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2141d71ae5a4SJacob Faibussowitsch {
214299cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214399cafbc1SBarry Smith 
214499cafbc1SBarry Smith   PetscFunctionBegin;
21459566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21469566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214899cafbc1SBarry Smith }
214999cafbc1SBarry Smith 
2150ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2151d71ae5a4SJacob Faibussowitsch {
215299cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
215399cafbc1SBarry Smith 
215499cafbc1SBarry Smith   PetscFunctionBegin;
21559566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21569566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215899cafbc1SBarry Smith }
215999cafbc1SBarry Smith 
2160ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2161d71ae5a4SJacob Faibussowitsch {
2162c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2163475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
2164475b8b61SHong Zhang   PetscScalar       *va, *vv;
2165475b8b61SHong Zhang   Vec                vB, vA;
2166475b8b61SHong Zhang   const PetscScalar *vb;
2167c91732d9SHong Zhang 
2168c91732d9SHong Zhang   PetscFunctionBegin;
21699566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
21709566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2171475b8b61SHong Zhang 
21729566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
2173c91732d9SHong Zhang   if (idx) {
2174475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2175d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2176c91732d9SHong Zhang     }
2177c91732d9SHong Zhang   }
2178c91732d9SHong Zhang 
21799566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
21809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21819566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2182c91732d9SHong Zhang 
21839566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21849566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2185475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2186c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2187475b8b61SHong Zhang       vv[i] = vb[i];
2188c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2189475b8b61SHong Zhang     } else {
2190475b8b61SHong Zhang       vv[i] = va[i];
21919371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2192c91732d9SHong Zhang     }
2193c91732d9SHong Zhang   }
21949566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
21959566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
21969566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21979566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21989566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21999566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
22003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2201c91732d9SHong Zhang }
2202c91732d9SHong Zhang 
2203*eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2204*eede4a3fSMark Adams {
2205*eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2206*eede4a3fSMark Adams   PetscInt    m = A->rmap->n;
2207*eede4a3fSMark Adams   Vec         vB, vA;
2208*eede4a3fSMark Adams 
2209*eede4a3fSMark Adams   PetscFunctionBegin;
2210*eede4a3fSMark Adams   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
2211*eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2212*eede4a3fSMark Adams   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
2213*eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2214*eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2215*eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2216*eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2217*eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2218*eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2219*eede4a3fSMark Adams }
2220*eede4a3fSMark Adams 
2221ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2222d71ae5a4SJacob Faibussowitsch {
2223f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2224f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2225f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2226f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2227f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2228f07e67edSHong Zhang   Vec                diagV, offdiagV;
2229ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2230ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2231f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2232f07e67edSHong Zhang   Mat                B = mat->B;
2233f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2234c87e5d42SMatthew Knepley 
2235c87e5d42SMatthew Knepley   PetscFunctionBegin;
2236f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2237f07e67edSHong Zhang   if (A->cmap->N == n) {
22389566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22399566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22409566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22419566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22429566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22433ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2244f07e67edSHong Zhang   } else if (n == 0) {
2245f07e67edSHong Zhang     if (m) {
22469566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22479371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22489371c9d4SSatish Balay         a[r] = 0.0;
22499371c9d4SSatish Balay         if (idx) idx[r] = -1;
22509371c9d4SSatish Balay       }
22519566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2252f07e67edSHong Zhang     }
22533ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2254f07e67edSHong Zhang   }
2255f07e67edSHong Zhang 
22569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22579566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22589566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22599566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2260f07e67edSHong Zhang 
2261f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22629566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2263ce496241SStefano Zampini   ba = bav;
2264f07e67edSHong Zhang   bi = b->i;
2265f07e67edSHong Zhang   bj = b->j;
22669566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2267f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2268f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2269f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22709371c9d4SSatish Balay       offdiagA[r]   = *ba;
22719371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2272f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2273f07e67edSHong Zhang       offdiagA[r] = 0.0;
2274f07e67edSHong Zhang 
2275f07e67edSHong Zhang       /* Find first hole in the cmap */
2276f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2277f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2278f07e67edSHong Zhang         if (col > j && j < cstart) {
2279f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2280f07e67edSHong Zhang           break;
2281f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2282f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2283f07e67edSHong Zhang           break;
2284f07e67edSHong Zhang         }
2285f07e67edSHong Zhang       }
22864e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2287f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2288f07e67edSHong Zhang         if (ncols == 0) {
2289f07e67edSHong Zhang           if (cstart) {
2290f07e67edSHong Zhang             offdiagIdx[r] = 0;
2291f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2292f07e67edSHong Zhang         } else { /* ncols > 0 */
2293f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2294f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2295f07e67edSHong Zhang         }
2296f07e67edSHong Zhang       }
2297f07e67edSHong Zhang     }
2298f07e67edSHong Zhang 
2299f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
23009371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
23019371c9d4SSatish Balay         offdiagA[r]   = *ba;
23029371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
23039371c9d4SSatish Balay       }
23049371c9d4SSatish Balay       ba++;
23059371c9d4SSatish Balay       bj++;
2306f07e67edSHong Zhang     }
2307f07e67edSHong Zhang   }
2308f07e67edSHong Zhang 
23099566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
23109566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2311f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2312f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2313f07e67edSHong Zhang       a[r] = diagA[r];
2314f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2315f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2316f07e67edSHong Zhang       a[r] = diagA[r];
2317c87e5d42SMatthew Knepley       if (idx) {
2318f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2319f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2320f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2321f07e67edSHong Zhang       }
2322f07e67edSHong Zhang     } else {
2323f07e67edSHong Zhang       a[r] = offdiagA[r];
2324f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2325c87e5d42SMatthew Knepley     }
2326c87e5d42SMatthew Knepley   }
23279566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23289566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23299566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23309566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23319566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23329566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23339566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2335c87e5d42SMatthew Knepley }
2336c87e5d42SMatthew Knepley 
2337ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2338d71ae5a4SJacob Faibussowitsch {
233903bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2340fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2341fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
234203bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
234303bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
234403bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2345ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2346ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2347fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2348fa213d2fSHong Zhang   Mat                B = mat->B;
2349fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
235003bc72f1SMatthew Knepley 
235103bc72f1SMatthew Knepley   PetscFunctionBegin;
2352fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2353fa213d2fSHong Zhang   if (A->cmap->N == n) {
23549566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23559566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23569566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23579566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23589566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23593ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2360fa213d2fSHong Zhang   } else if (n == 0) {
2361fa213d2fSHong Zhang     if (m) {
23629566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23639371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23649371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23659371c9d4SSatish Balay         if (idx) idx[r] = -1;
23669371c9d4SSatish Balay       }
23679566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2368fa213d2fSHong Zhang     }
23693ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2370fa213d2fSHong Zhang   }
2371fa213d2fSHong Zhang 
23729566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23739566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23749566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23759566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2376fa213d2fSHong Zhang 
2377fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23789566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2379ce496241SStefano Zampini   ba = bav;
2380fa213d2fSHong Zhang   bi = b->i;
2381fa213d2fSHong Zhang   bj = b->j;
23829566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2383fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2384fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2385fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23869371c9d4SSatish Balay       offdiagA[r]   = *ba;
23879371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2388fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2389fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2390fa213d2fSHong Zhang 
2391fa213d2fSHong Zhang       /* Find first hole in the cmap */
2392fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2393fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2394fa213d2fSHong Zhang         if (col > j && j < cstart) {
2395fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2396fa213d2fSHong Zhang           break;
2397fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2398fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2399fa213d2fSHong Zhang           break;
2400fa213d2fSHong Zhang         }
2401fa213d2fSHong Zhang       }
24024e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2403fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2404fa213d2fSHong Zhang         if (ncols == 0) {
2405fa213d2fSHong Zhang           if (cstart) {
2406fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2407fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2408fa213d2fSHong Zhang         } else { /* ncols > 0 */
2409fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2410fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2411fa213d2fSHong Zhang         }
2412fa213d2fSHong Zhang       }
2413fa213d2fSHong Zhang     }
2414fa213d2fSHong Zhang 
2415fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24169371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24179371c9d4SSatish Balay         offdiagA[r]   = *ba;
24189371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24199371c9d4SSatish Balay       }
24209371c9d4SSatish Balay       ba++;
24219371c9d4SSatish Balay       bj++;
2422fa213d2fSHong Zhang     }
2423fa213d2fSHong Zhang   }
2424fa213d2fSHong Zhang 
24259566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24269566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2427fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2428fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
242903bc72f1SMatthew Knepley       a[r] = diagA[r];
2430fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2431fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2432fa213d2fSHong Zhang       a[r] = diagA[r];
2433fa213d2fSHong Zhang       if (idx) {
2434fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
243503bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2436fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2437fa213d2fSHong Zhang       }
243803bc72f1SMatthew Knepley     } else {
243903bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2440fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
244103bc72f1SMatthew Knepley     }
244203bc72f1SMatthew Knepley   }
24439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24449566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24459566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24469566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24479566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24489566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24499566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
245103bc72f1SMatthew Knepley }
245203bc72f1SMatthew Knepley 
2453ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2454d71ae5a4SJacob Faibussowitsch {
2455c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24561a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24571a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2458c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2459c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2460c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2461ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2462ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24631a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24641a254869SHong Zhang   Mat                B = mat->B;
24651a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2466c87e5d42SMatthew Knepley 
2467c87e5d42SMatthew Knepley   PetscFunctionBegin;
24681a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24691a254869SHong Zhang   if (A->cmap->N == n) {
24709566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24719566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24729566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24739566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24749566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24753ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24761a254869SHong Zhang   } else if (n == 0) {
24771a254869SHong Zhang     if (m) {
24789566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24799371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24809371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24819371c9d4SSatish Balay         if (idx) idx[r] = -1;
24829371c9d4SSatish Balay       }
24839566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24841a254869SHong Zhang     }
24853ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24861a254869SHong Zhang   }
24871a254869SHong Zhang 
24889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24899566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24909566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24919566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24921a254869SHong Zhang 
24931a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2495ce496241SStefano Zampini   ba = bav;
24961a254869SHong Zhang   bi = b->i;
24971a254869SHong Zhang   bj = b->j;
24989566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24991a254869SHong Zhang   for (r = 0; r < m; r++) {
25001a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
25011a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
25029371c9d4SSatish Balay       offdiagA[r]   = *ba;
25039371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
25041a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
25051a254869SHong Zhang       offdiagA[r] = 0.0;
25061a254869SHong Zhang 
25071a254869SHong Zhang       /* Find first hole in the cmap */
25081a254869SHong Zhang       for (j = 0; j < ncols; j++) {
25091a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
25101a254869SHong Zhang         if (col > j && j < cstart) {
25111a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25121a254869SHong Zhang           break;
25131a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25141a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25151a254869SHong Zhang           break;
25161a254869SHong Zhang         }
25171a254869SHong Zhang       }
25184e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25191a254869SHong Zhang         /* a hole is outside compressed Bcols */
25201a254869SHong Zhang         if (ncols == 0) {
25211a254869SHong Zhang           if (cstart) {
25221a254869SHong Zhang             offdiagIdx[r] = 0;
25231a254869SHong Zhang           } else offdiagIdx[r] = cend;
25241a254869SHong Zhang         } else { /* ncols > 0 */
25251a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25261a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25271a254869SHong Zhang         }
25281a254869SHong Zhang       }
25291a254869SHong Zhang     }
25301a254869SHong Zhang 
25311a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25329371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25339371c9d4SSatish Balay         offdiagA[r]   = *ba;
25349371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25359371c9d4SSatish Balay       }
25369371c9d4SSatish Balay       ba++;
25379371c9d4SSatish Balay       bj++;
25381a254869SHong Zhang     }
25391a254869SHong Zhang   }
25401a254869SHong Zhang 
25419566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25429566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25431a254869SHong Zhang   for (r = 0; r < m; ++r) {
25441a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2545c87e5d42SMatthew Knepley       a[r] = diagA[r];
25461a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25471a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25481a254869SHong Zhang       a[r] = diagA[r];
25491a254869SHong Zhang       if (idx) {
25501a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2551c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25521a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25531a254869SHong Zhang       }
2554c87e5d42SMatthew Knepley     } else {
2555c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25561a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2557c87e5d42SMatthew Knepley     }
2558c87e5d42SMatthew Knepley   }
25599566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25609566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25619566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25629566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25639566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25649566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25659566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2567c87e5d42SMatthew Knepley }
2568c87e5d42SMatthew Knepley 
2569d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2570d71ae5a4SJacob Faibussowitsch {
2571f6d58c54SBarry Smith   Mat *dummy;
25725494a064SHong Zhang 
25735494a064SHong Zhang   PetscFunctionBegin;
25749566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2575f6d58c54SBarry Smith   *newmat = *dummy;
25769566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25785494a064SHong Zhang }
25795494a064SHong Zhang 
2580ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2581d71ae5a4SJacob Faibussowitsch {
2582bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2583bbead8a2SBarry Smith 
2584bbead8a2SBarry Smith   PetscFunctionBegin;
25859566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25867b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2588bbead8a2SBarry Smith }
2589bbead8a2SBarry Smith 
2590d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2591d71ae5a4SJacob Faibussowitsch {
259273a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
259373a71a0fSBarry Smith 
259473a71a0fSBarry Smith   PetscFunctionBegin;
259508401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25969566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2597679944adSJunchao Zhang   if (x->assembled) {
25989566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2599679944adSJunchao Zhang   } else {
26009566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2601679944adSJunchao Zhang   }
26029566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
26039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
26043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
260573a71a0fSBarry Smith }
2606bbead8a2SBarry Smith 
2607ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2608d71ae5a4SJacob Faibussowitsch {
2609b1b1104fSBarry Smith   PetscFunctionBegin;
2610b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2611b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2613b1b1104fSBarry Smith }
2614b1b1104fSBarry Smith 
2615b1b1104fSBarry Smith /*@
2616f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2617f2afee66SBarry Smith 
26182ef1f0ffSBarry Smith   Not Collective
2619f2afee66SBarry Smith 
2620f2afee66SBarry Smith   Input Parameter:
2621f2afee66SBarry Smith . A - the matrix
2622f2afee66SBarry Smith 
2623f2afee66SBarry Smith   Output Parameter:
2624f2afee66SBarry Smith . nz - the number of nonzeros
2625f2afee66SBarry Smith 
2626f2afee66SBarry Smith   Level: advanced
2627f2afee66SBarry Smith 
2628fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2629f2afee66SBarry Smith @*/
2630d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2631d71ae5a4SJacob Faibussowitsch {
2632f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2633f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2634dfebb78cSStefano Zampini   PetscBool   isaij;
2635f2afee66SBarry Smith 
2636f2afee66SBarry Smith   PetscFunctionBegin;
2637dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2638dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2639f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2641f2afee66SBarry Smith }
2642f2afee66SBarry Smith 
2643f2afee66SBarry Smith /*@
2644b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2645b1b1104fSBarry Smith 
2646c3339decSBarry Smith   Collective
2647b1b1104fSBarry Smith 
2648b1b1104fSBarry Smith   Input Parameters:
2649b1b1104fSBarry Smith + A  - the matrix
265011a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2651b1b1104fSBarry Smith 
265296a0c994SBarry Smith   Level: advanced
265396a0c994SBarry Smith 
2654fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2655b1b1104fSBarry Smith @*/
2656d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2657d71ae5a4SJacob Faibussowitsch {
2658b1b1104fSBarry Smith   PetscFunctionBegin;
2659cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2661b1b1104fSBarry Smith }
2662b1b1104fSBarry Smith 
2663d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject)
2664d71ae5a4SJacob Faibussowitsch {
2665b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2666b1b1104fSBarry Smith 
2667b1b1104fSBarry Smith   PetscFunctionBegin;
2668d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2669b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26709566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26711baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2672d0609cedSBarry Smith   PetscOptionsHeadEnd();
26733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2674b1b1104fSBarry Smith }
2675b1b1104fSBarry Smith 
2676ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2677d71ae5a4SJacob Faibussowitsch {
26787d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2679c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26807d68702bSBarry Smith 
26817d68702bSBarry Smith   PetscFunctionBegin;
2682c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26839566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26845519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2685b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26869566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2687b83222d8SBarry Smith     aij->nonew = nonew;
26887d68702bSBarry Smith   }
26899566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26917d68702bSBarry Smith }
26927d68702bSBarry Smith 
2693ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2694d71ae5a4SJacob Faibussowitsch {
26953b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26963b49f96aSBarry Smith 
26973b49f96aSBarry Smith   PetscFunctionBegin;
269808401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26999566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
27003b49f96aSBarry Smith   if (d) {
27013b49f96aSBarry Smith     PetscInt rstart;
27029566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
27033b49f96aSBarry Smith     *d += rstart;
27043b49f96aSBarry Smith   }
27053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27063b49f96aSBarry Smith }
27073b49f96aSBarry Smith 
2708ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2709d71ae5a4SJacob Faibussowitsch {
2710a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2711a8ee9fb5SBarry Smith 
2712a8ee9fb5SBarry Smith   PetscFunctionBegin;
27139566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2715a8ee9fb5SBarry Smith }
27163b49f96aSBarry Smith 
271758c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2718dec0b466SHong Zhang {
2719dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2720dec0b466SHong Zhang 
2721dec0b466SHong Zhang   PetscFunctionBegin;
272258c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
272358c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2725dec0b466SHong Zhang }
2726dec0b466SHong Zhang 
2727cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2728cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2729cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2730cda55fadSBarry Smith                                        MatMult_MPIAIJ,
273197304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27327c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27337c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2734f4259b30SLisandro Dalcin                                        NULL,
2735f4259b30SLisandro Dalcin                                        NULL,
2736f4259b30SLisandro Dalcin                                        NULL,
2737f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2738f4259b30SLisandro Dalcin                                        NULL,
2739f4259b30SLisandro Dalcin                                        NULL,
274041f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2741b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
274297304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2743cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2744cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2745cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2746cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
274797304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2748cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2749cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2750cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2751d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2752f4259b30SLisandro Dalcin                                        NULL,
2753f4259b30SLisandro Dalcin                                        NULL,
2754f4259b30SLisandro Dalcin                                        NULL,
2755f4259b30SLisandro Dalcin                                        NULL,
275626cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2757f4259b30SLisandro Dalcin                                        NULL,
2758f4259b30SLisandro Dalcin                                        NULL,
2759a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2760f4259b30SLisandro Dalcin                                        NULL,
2761d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2762f4259b30SLisandro Dalcin                                        NULL,
2763f4259b30SLisandro Dalcin                                        NULL,
2764f4259b30SLisandro Dalcin                                        NULL,
2765f4259b30SLisandro Dalcin                                        NULL,
2766d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27677dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2768cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2769cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2770cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2771d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2772cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27737d68702bSBarry Smith                                        MatShift_MPIAIJ,
277499e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2775564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
277673a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27778a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27788a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2779f4259b30SLisandro Dalcin                                        NULL,
2780f4259b30SLisandro Dalcin                                        NULL,
278193dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2782f4259b30SLisandro Dalcin                                        NULL,
2783cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
278472e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2785f4259b30SLisandro Dalcin                                        NULL,
27867dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2787e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2788e03a110bSBarry Smith                                        MatView_MPIAIJ,
2789f4259b30SLisandro Dalcin                                        NULL,
2790f4259b30SLisandro Dalcin                                        NULL,
2791f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2792f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2793f4259b30SLisandro Dalcin                                        NULL,
2794f4259b30SLisandro Dalcin                                        NULL,
2795f4259b30SLisandro Dalcin                                        NULL,
2796d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2797c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2798f4259b30SLisandro Dalcin                                        NULL,
2799f4259b30SLisandro Dalcin                                        NULL,
2800f4259b30SLisandro Dalcin                                        NULL,
2801f4259b30SLisandro Dalcin                                        NULL,
28023acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2803b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2804f4259b30SLisandro Dalcin                                        NULL,
2805f4259b30SLisandro Dalcin                                        NULL,
2806f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2807f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2808f4259b30SLisandro Dalcin                                        NULL,
2809f4259b30SLisandro Dalcin                                        NULL,
28105bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
2811a3bbdb47SHong Zhang                                        MatIsSymmetric_MPIAIJ,
2812f4259b30SLisandro Dalcin                                        NULL,
2813f4259b30SLisandro Dalcin                                        NULL,
2814f4259b30SLisandro Dalcin                                        NULL,
2815f4259b30SLisandro Dalcin                                        NULL,
2816f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2817f4259b30SLisandro Dalcin                                        NULL,
281826be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2819f4259b30SLisandro Dalcin                                        NULL,
2820f4259b30SLisandro Dalcin                                        NULL,
2821cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2822f4259b30SLisandro Dalcin                                        NULL,
2823f4259b30SLisandro Dalcin                                        NULL,
2824f4259b30SLisandro Dalcin                                        NULL,
2825b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28264222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2827f4259b30SLisandro Dalcin                                        NULL,
2828f4259b30SLisandro Dalcin                                        NULL,
28292fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2830f4259b30SLisandro Dalcin                                        NULL,
2831d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
283299cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
283369db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2834f4259b30SLisandro Dalcin                                        NULL,
2835f4259b30SLisandro Dalcin                                        NULL,
2836f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2837f4259b30SLisandro Dalcin                                        NULL,
28385494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2839f4259b30SLisandro Dalcin                                        NULL,
28403b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2841d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2842f4259b30SLisandro Dalcin                                        NULL,
2843c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2844f4259b30SLisandro Dalcin                                        NULL,
2845f4259b30SLisandro Dalcin                                        NULL,
2846b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2847f4259b30SLisandro Dalcin                                        NULL,
2848f4259b30SLisandro Dalcin                                        NULL,
2849f4259b30SLisandro Dalcin                                        NULL,
2850b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2851f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2852a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2853bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2854a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28557dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2856f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2857f4259b30SLisandro Dalcin                                        NULL,
2858f4259b30SLisandro Dalcin                                        NULL,
2859187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2860f4259b30SLisandro Dalcin                                        NULL,
2861f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2862f4259b30SLisandro Dalcin                                        NULL,
2863f4259b30SLisandro Dalcin                                        NULL,
2864f4259b30SLisandro Dalcin                                        NULL,
2865f4259b30SLisandro Dalcin                                        NULL,
286646533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2867f4259b30SLisandro Dalcin                                        NULL,
2868f4259b30SLisandro Dalcin                                        NULL,
28699c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2870a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28714222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2872f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2873f4259b30SLisandro Dalcin                                        NULL,
287472833a62Smarkadams4                                        NULL,
287572833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28762d776b49SBarry Smith                                        NULL,
2877dec0b466SHong Zhang                                        /*150*/ NULL,
2878*eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
2879*eede4a3fSMark Adams                                        MatGetRowSumAbs_MPIAIJ};
288036ce4990SBarry Smith 
2881ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2882d71ae5a4SJacob Faibussowitsch {
28832e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28842e8a6d31SBarry Smith 
28852e8a6d31SBarry Smith   PetscFunctionBegin;
28869566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28879566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28892e8a6d31SBarry Smith }
28902e8a6d31SBarry Smith 
2891ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2892d71ae5a4SJacob Faibussowitsch {
28932e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28942e8a6d31SBarry Smith 
28952e8a6d31SBarry Smith   PetscFunctionBegin;
28969566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28979566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28992e8a6d31SBarry Smith }
29008a729477SBarry Smith 
2901d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2902d71ae5a4SJacob Faibussowitsch {
2903ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
29045d2a9ed1SStefano Zampini   PetscMPIInt size;
2905a23d5eceSKris Buschelman 
2906a23d5eceSKris Buschelman   PetscFunctionBegin;
2907ad79cf63SBarry Smith   if (B->hash_active) {
2908aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2909ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2910ad79cf63SBarry Smith   }
29119566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29129566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2913899cda47SBarry Smith 
2914cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2915eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2916cb7b82ddSBarry Smith #else
29179566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2918cb7b82ddSBarry Smith #endif
29199566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29209566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29219566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2922cb7b82ddSBarry Smith 
29239566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
29249566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29259566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29269566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29279566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29289566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2929cb7b82ddSBarry Smith 
2930ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29319566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29329566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29339566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29349566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2935899cda47SBarry Smith 
29369566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29379566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2938526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2939cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
294015001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2942a23d5eceSKris Buschelman }
2943a23d5eceSKris Buschelman 
2944ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2945d71ae5a4SJacob Faibussowitsch {
2946ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2947846b4da1SFande Kong 
2948846b4da1SFande Kong   PetscFunctionBegin;
2949846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29509566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29519566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2952846b4da1SFande Kong 
2953846b4da1SFande Kong #if defined(PETSC_USE_CTABLE)
2954eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2955846b4da1SFande Kong #else
29569566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2957846b4da1SFande Kong #endif
29589566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29599566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29609566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2961846b4da1SFande Kong 
29629566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->A));
29639566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->B));
2964846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2965846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2966846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
29673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2968846b4da1SFande Kong }
2969846b4da1SFande Kong 
2970d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2971d71ae5a4SJacob Faibussowitsch {
2972d6dfbf8fSBarry Smith   Mat         mat;
2973416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2974d6dfbf8fSBarry Smith 
29753a40ed3dSBarry Smith   PetscFunctionBegin;
2976f4259b30SLisandro Dalcin   *newmat = NULL;
29779566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29789566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29799566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29809566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2981273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2982e1b6402fSHong Zhang 
2983d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2984501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2985e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2986d6dfbf8fSBarry Smith 
298717699dbbSLois Curfman McInnes   a->size         = oldmat->size;
298817699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2989e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2990e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2991501880eeSStefano Zampini   a->rowindices   = NULL;
2992501880eeSStefano Zampini   a->rowvalues    = NULL;
2993bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
2994d6dfbf8fSBarry Smith 
29959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
29969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2997420957c1SBarry Smith   if (matin->hash_active) {
2998420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2999420957c1SBarry Smith   } else {
3000420957c1SBarry Smith     mat->preallocated = matin->preallocated;
30012ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
3002aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3003eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
3004b1fc9764SSatish Balay #else
30059566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
30069566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
3007b1fc9764SSatish Balay #endif
3008501880eeSStefano Zampini     } else a->colmap = NULL;
30093f41c07dSBarry Smith     if (oldmat->garray) {
3010b1d57f15SBarry Smith       PetscInt len;
3011d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30129566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30139566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3014501880eeSStefano Zampini     } else a->garray = NULL;
3015d6dfbf8fSBarry Smith 
30160de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30170de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30180de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3019aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3020aa624791SPierre Jolivet     if (oldmat->Mvctx) PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
30219566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30229566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3023420957c1SBarry Smith   }
30249566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30258a729477SBarry Smith   *newmat = mat;
30263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30278a729477SBarry Smith }
3028416022c9SBarry Smith 
3029d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3030d71ae5a4SJacob Faibussowitsch {
303152f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
303252f91c60SVaclav Hapla 
303352f91c60SVaclav Hapla   PetscFunctionBegin;
303452f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
303552f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3036c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30379566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30389566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30399566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
304052f91c60SVaclav Hapla   if (isbinary) {
30419566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
304252f91c60SVaclav Hapla   } else if (ishdf5) {
304352f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30449566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
304552f91c60SVaclav Hapla #else
304652f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
304752f91c60SVaclav Hapla #endif
304852f91c60SVaclav Hapla   } else {
304998921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
305052f91c60SVaclav Hapla   }
30513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
305252f91c60SVaclav Hapla }
305352f91c60SVaclav Hapla 
3054d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3055d71ae5a4SJacob Faibussowitsch {
30563ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30573ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30583ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30598fb81238SShri Abhyankar 
30608fb81238SShri Abhyankar   PetscFunctionBegin;
30619566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30628fb81238SShri Abhyankar 
30633ea6fe3dSLisandro Dalcin   /* read in matrix header */
30649566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
306508401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30669371c9d4SSatish Balay   M  = header[1];
30679371c9d4SSatish Balay   N  = header[2];
30689371c9d4SSatish Balay   nz = header[3];
306908401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
307008401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
307108401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
307208ea439dSMark F. Adams 
30733ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30749566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30753ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30763ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30773ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30799566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30808fb81238SShri Abhyankar 
30813ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30829566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3083aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30848fb81238SShri Abhyankar 
30853ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30869566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30889566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
30899371c9d4SSatish Balay   rowidxs[0] = 0;
30909371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
309138b83642SBarry Smith   if (nz != PETSC_MAX_INT) {
30921c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
309308401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
309438b83642SBarry Smith   }
309538b83642SBarry Smith 
30963ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
30979566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
30989566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
30999566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
31003ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
31019566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
31029566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
31039566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
31043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31058fb81238SShri Abhyankar }
31068fb81238SShri Abhyankar 
31073782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3108ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3109d71ae5a4SJacob Faibussowitsch {
31104aa3045dSJed Brown   IS          iscol_local;
3111c5e4d11fSDmitry Karpeev   PetscBool   isstride;
3112c5e4d11fSDmitry Karpeev   PetscMPIInt lisstride = 0, gisstride;
31133782ecc7SHong Zhang 
31143782ecc7SHong Zhang   PetscFunctionBegin;
31153782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31169566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31173782ecc7SHong Zhang 
3118c5e4d11fSDmitry Karpeev   if (isstride) {
3119c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31209566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31219566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31229566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
3123c5e4d11fSDmitry Karpeev     if (mstart == start && mlen - mstart == len) lisstride = 1;
3124c5e4d11fSDmitry Karpeev   }
31253782ecc7SHong Zhang 
31261c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3127c5e4d11fSDmitry Karpeev   if (gisstride) {
3128c5e4d11fSDmitry Karpeev     PetscInt N;
31299566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31309566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31319566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31329566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3133c5e4d11fSDmitry Karpeev   } else {
3134c5bfad50SMark F. Adams     PetscInt cbs;
31359566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31369566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31379566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3138b79d0421SJed Brown   }
31393782ecc7SHong Zhang 
31403782ecc7SHong Zhang   *isseq = iscol_local;
31413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3142c5e4d11fSDmitry Karpeev }
31438d2139bdSHong Zhang 
3144ddfdf956SHong Zhang /*
31459c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31469c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3147ddfdf956SHong Zhang 
3148ddfdf956SHong Zhang  Input Parameters:
314927430b45SBarry Smith +   mat - matrix
315027430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31519c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
315227430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3153ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
315427430b45SBarry Smith 
315527430b45SBarry Smith  Output Parameters:
315627430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
315727430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
315827430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
315927430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3160ddfdf956SHong Zhang  */
3161ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[])
3162d71ae5a4SJacob Faibussowitsch {
3163040216a4SHong Zhang   Vec             x, cmap;
3164040216a4SHong Zhang   const PetscInt *is_idx;
3165040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31669c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3167040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3168040216a4SHong Zhang   Mat             B    = a->B;
3169040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3170a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31718b3fa1f7SHong Zhang   MPI_Comm        comm;
31723a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31733782ecc7SHong Zhang 
31743782ecc7SHong Zhang   PetscFunctionBegin;
31759566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31769566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31778b3fa1f7SHong Zhang 
3178ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31799566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31809566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31819566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31829566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31830a351717SHong Zhang 
31849c988bcaSHong Zhang   /* Get start indices */
31859566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3186ddfdf956SHong Zhang   isstart -= ncols;
31879566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3188040216a4SHong Zhang 
31899566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
31909566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
31919566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
31929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3193ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
31948b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3195ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
31969c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
31978b3fa1f7SHong Zhang   }
31989566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
31999566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
32009566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
32018b3fa1f7SHong Zhang 
32029c988bcaSHong Zhang   /* Get iscol_d */
32039566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
32049566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
32059566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3206feb78a15SHong Zhang 
32079c988bcaSHong Zhang   /* Get isrow_d */
32089566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3209feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32119566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32129c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32139566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3214feb78a15SHong Zhang 
32159566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32169566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32179566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3218feb78a15SHong Zhang 
32199c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32209566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32219566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3222ddfdf956SHong Zhang 
32239566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
322407250d77SHong Zhang 
32259566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32269566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
322764efcef9SHong Zhang 
32289c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3229ddfdf956SHong Zhang   /* off-process column indices */
32309c988bcaSHong Zhang   count = 0;
32319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3233feb78a15SHong Zhang 
32349566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32359566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32368b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3237f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32389c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32391c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32401c645242SHong Zhang       count++;
32418b3fa1f7SHong Zhang     }
32428b3fa1f7SHong Zhang   }
32439566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32449566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
324507250d77SHong Zhang 
32469566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3247b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3248b6d9b4e0SHong Zhang 
32499566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32509c988bcaSHong Zhang   *garray = cmap1;
32519c988bcaSHong Zhang 
32529566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32539566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32549566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3256040216a4SHong Zhang }
3257040216a4SHong Zhang 
3258b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3259d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3260d71ae5a4SJacob Faibussowitsch {
3261b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32621fd43edeSHong Zhang   Mat         M = NULL;
32633b00a383SHong Zhang   MPI_Comm    comm;
3264b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32653b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3266b20e2604SHong Zhang   PetscInt    n;
32673b00a383SHong Zhang 
32683b00a383SHong Zhang   PetscFunctionBegin;
32699566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32703b00a383SHong Zhang 
32713b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3272b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32739566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
327428b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32753b00a383SHong Zhang 
32769566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
327728b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32783b00a383SHong Zhang 
32799566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
328028b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32813b00a383SHong Zhang 
3282b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3283b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32849566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32859566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
328648a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32879566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32889566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
32893b00a383SHong Zhang 
32903b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
32919c988bcaSHong Zhang     const PetscInt *garray;
3292b20e2604SHong Zhang     PetscInt        BsubN;
32933b00a383SHong Zhang 
3294b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
32959566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
32963b00a383SHong Zhang 
3297b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
32989566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
32999566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
33003b00a383SHong Zhang 
33019c988bcaSHong Zhang     /* Create submatrix M */
33029566063dSJacob Faibussowitsch     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M));
33033b00a383SHong Zhang 
3304b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3305b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33067cfce09cSHong Zhang 
33079566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3308b20e2604SHong Zhang     n = asub->B->cmap->N;
3309b20e2604SHong Zhang     if (BsubN > n) {
3310c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33117cfce09cSHong Zhang       const PetscInt *idx;
33129c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33139566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33147cfce09cSHong Zhang 
33159566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33167cfce09cSHong Zhang       j = 0;
33179566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3318b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33197cfce09cSHong Zhang         if (j >= BsubN) break;
33209c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33217cfce09cSHong Zhang 
33229c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33237cfce09cSHong Zhang           idx_new[i] = idx[j++];
332498921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33257cfce09cSHong Zhang       }
33269566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33277cfce09cSHong Zhang 
33289566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33299566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33307cfce09cSHong Zhang 
3331b20e2604SHong Zhang     } else if (BsubN < n) {
333298921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3333b20e2604SHong Zhang     }
33347cfce09cSHong Zhang 
33359566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3336b20e2604SHong Zhang     *submat = M;
33373b00a383SHong Zhang 
3338e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33399566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33409566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33413b00a383SHong Zhang 
33429566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33439566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33443b00a383SHong Zhang 
33459566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33469566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33473b00a383SHong Zhang   }
33483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33493b00a383SHong Zhang }
33503b00a383SHong Zhang 
3351d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3352d71ae5a4SJacob Faibussowitsch {
33531358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33543782ecc7SHong Zhang   PetscInt  csize;
335518e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33564a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33573782ecc7SHong Zhang   MPI_Comm  comm;
33583782ecc7SHong Zhang 
33593782ecc7SHong Zhang   PetscFunctionBegin;
3360bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3361a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33628f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33639566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3364d5761cdaSHong Zhang     if (isrow_d) {
3365d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3366d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3367d5761cdaSHong Zhang     } else {
33689566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3369d5761cdaSHong Zhang       if (iscol_local) {
3370d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3371d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3372d5761cdaSHong Zhang       }
3373d5761cdaSHong Zhang     }
33748f69fa7bSHong Zhang   } else {
3375e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
337618e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33779566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33783782ecc7SHong Zhang     if (!n) {
337918e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33803782ecc7SHong Zhang     } else {
33819566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33829566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3383ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33848f69fa7bSHong Zhang     }
33853782ecc7SHong Zhang 
3386e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
338718e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33889566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
338918e627e3SHong Zhang     if (!n) {
339018e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
339118e627e3SHong Zhang     } else {
33929566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
33939566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
339418e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
339518e627e3SHong Zhang     }
339618e627e3SHong Zhang 
33979566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
33981c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
339918e627e3SHong Zhang     sameRowDist = tsameDist[0];
340018e627e3SHong Zhang   }
340118e627e3SHong Zhang 
340218e627e3SHong Zhang   if (sameRowDist) {
3403b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
34043b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
34059566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34063ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3407b20e2604SHong Zhang     } else { /* sameRowDist */
34083b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34091358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34101358a193SHong Zhang         PetscBool sorted;
34119566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34129566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34139566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
341408401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34151358a193SHong Zhang 
34169566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34171358a193SHong Zhang         if (sorted) {
34181358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34199566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34203ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34213782ecc7SHong Zhang         }
34221358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
342348c0d076SHong Zhang         IS iscol_sub;
34249566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
342548c0d076SHong Zhang         if (iscol_sub) {
34269566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34273ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
342848c0d076SHong Zhang         }
34291358a193SHong Zhang       }
34301358a193SHong Zhang     }
34311358a193SHong Zhang   }
34323782ecc7SHong Zhang 
3433bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34343782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34359566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
343628b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34373782ecc7SHong Zhang   } else {
343848a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34391358a193SHong Zhang   }
34403782ecc7SHong Zhang 
34419566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34429566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34438f69fa7bSHong Zhang 
3444b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34459566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34469566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3447b79d0421SJed Brown   }
34483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34494aa3045dSJed Brown }
34504aa3045dSJed Brown 
3451feb78a15SHong Zhang /*@C
345211a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3453feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3454feb78a15SHong Zhang 
3455d083f849SBarry Smith   Collective
3456feb78a15SHong Zhang 
3457feb78a15SHong Zhang   Input Parameters:
3458feb78a15SHong Zhang + comm   - MPI communicator
3459feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3460b20e2604SHong Zhang . B      - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine
34612ef1f0ffSBarry Smith - garray - global index of `B` columns
3462feb78a15SHong Zhang 
3463feb78a15SHong Zhang   Output Parameter:
34642ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
346527430b45SBarry Smith 
3466feb78a15SHong Zhang   Level: advanced
3467feb78a15SHong Zhang 
3468feb78a15SHong Zhang   Notes:
346911a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
347011a5261eSBarry Smith 
34712ef1f0ffSBarry Smith   `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore.
3472feb78a15SHong Zhang 
34731cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3474feb78a15SHong Zhang @*/
3475d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat)
3476d71ae5a4SJacob Faibussowitsch {
3477feb78a15SHong Zhang   Mat_MPIAIJ        *maij;
3478e489de8fSHong Zhang   Mat_SeqAIJ        *b  = (Mat_SeqAIJ *)B->data, *bnew;
3479a5348796SHong Zhang   PetscInt          *oi = b->i, *oj = b->j, i, nz, col;
3480ce496241SStefano Zampini   const PetscScalar *oa;
3481e489de8fSHong Zhang   Mat                Bnew;
3482feb78a15SHong Zhang   PetscInt           m, n, N;
34834ab4d6f4SRichard Tran Mills   MatType            mpi_mat_type;
3484feb78a15SHong Zhang 
3485feb78a15SHong Zhang   PetscFunctionBegin;
34869566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
34879566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
348808401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
348937a5e0faSPierre Jolivet   PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3490b6d9b4e0SHong Zhang   /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */
349108401ef6SPierre Jolivet   /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */
3492feb78a15SHong Zhang 
3493e489de8fSHong Zhang   /* Get global columns of mat */
34941c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm));
3495feb78a15SHong Zhang 
34969566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N));
34974ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
34984ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
34994ab4d6f4SRichard Tran Mills   PetscCall(MatSetType(*mat, mpi_mat_type));
35004ab4d6f4SRichard Tran Mills 
350137a5e0faSPierre Jolivet   if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs));
3502feb78a15SHong Zhang   maij = (Mat_MPIAIJ *)(*mat)->data;
3503feb78a15SHong Zhang 
3504feb78a15SHong Zhang   (*mat)->preallocated = PETSC_TRUE;
3505feb78a15SHong Zhang 
35069566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
35079566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
3508feb78a15SHong Zhang 
3509e489de8fSHong Zhang   /* Set A as diagonal portion of *mat */
3510feb78a15SHong Zhang   maij->A = A;
3511feb78a15SHong Zhang 
3512a5348796SHong Zhang   nz = oi[m];
3513a5348796SHong Zhang   for (i = 0; i < nz; i++) {
3514a5348796SHong Zhang     col   = oj[i];
3515a5348796SHong Zhang     oj[i] = garray[col];
3516feb78a15SHong Zhang   }
3517feb78a15SHong Zhang 
3518e489de8fSHong Zhang   /* Set Bnew as off-diagonal portion of *mat */
35199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &oa));
35209566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew));
35219566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &oa));
3522e489de8fSHong Zhang   bnew        = (Mat_SeqAIJ *)Bnew->data;
3523e489de8fSHong Zhang   bnew->maxnz = b->maxnz; /* allocated nonzeros of B */
3524e489de8fSHong Zhang   maij->B     = Bnew;
3525d5761cdaSHong Zhang 
352608401ef6SPierre Jolivet   PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N);
3527d5761cdaSHong Zhang 
3528e489de8fSHong Zhang   b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */
3529d5761cdaSHong Zhang   b->free_a       = PETSC_FALSE;
3530d5761cdaSHong Zhang   b->free_ij      = PETSC_FALSE;
35319566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&B));
3532d5761cdaSHong Zhang 
3533e489de8fSHong Zhang   bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */
3534e489de8fSHong Zhang   bnew->free_a       = PETSC_TRUE;
3535e489de8fSHong Zhang   bnew->free_ij      = PETSC_TRUE;
3536feb78a15SHong Zhang 
3537a5348796SHong Zhang   /* condense columns of maij->B */
35389566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
35399566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
35409566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
35419566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
35429566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3544feb78a15SHong Zhang }
3545feb78a15SHong Zhang 
3546ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35474aa3045dSJed Brown 
3548d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3549d71ae5a4SJacob Faibussowitsch {
355098b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
355185f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
355298b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35531fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
355498b658c4SHong Zhang   MatScalar      *aa;
355500e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3556a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
355798b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
355898b658c4SHong Zhang   IS              iscol_sub, iscmap;
355998b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
356018e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3561a31a438cSHong Zhang   MPI_Comm        comm;
35627e2c5f70SBarry Smith 
3563a0ff6018SBarry Smith   PetscFunctionBegin;
35649566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3565d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35669566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
356728b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35689566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3569d5761cdaSHong Zhang 
35709566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
357128b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3572d5761cdaSHong Zhang 
35739566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
357428b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3575d5761cdaSHong Zhang 
35769566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3577d5761cdaSHong Zhang 
3578d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35793b00a383SHong Zhang     PetscBool flg;
35803b00a383SHong Zhang 
35819566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35829566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3583bcae8d28SHong Zhang 
35843b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3585366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35869566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3587366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
35881c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3589366a327dSHong Zhang     if (allcolumns) {
3590366a327dSHong Zhang       iscol_sub = iscol_local;
35919566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35929566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3593366a327dSHong Zhang 
35943b00a383SHong Zhang     } else {
35951358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3596244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35979566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
35989566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
35999566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
36008d2139bdSHong Zhang       count = 0;
3601a31a438cSHong Zhang       k     = 0;
3602a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3603a31a438cSHong Zhang         j = is_idx[i];
3604a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3605a31a438cSHong Zhang           /* diagonal part of mat */
36068d2139bdSHong Zhang           idx[count]     = j;
3607366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36084a3daf6eSHong Zhang         } else if (Bn) {
3609a31a438cSHong Zhang           /* off-diagonal part of mat */
3610a31a438cSHong Zhang           if (j == garray[k]) {
36118d2139bdSHong Zhang             idx[count]     = j;
3612a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3613a31a438cSHong Zhang           } else if (j > garray[k]) {
3614a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3615a31a438cSHong Zhang             if (j == garray[k]) {
3616a31a438cSHong Zhang               idx[count]     = j;
3617a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36188d2139bdSHong Zhang             }
36198d2139bdSHong Zhang           }
36208d2139bdSHong Zhang         }
36218d2139bdSHong Zhang       }
36229566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36238d2139bdSHong Zhang 
36249566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36259566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36269566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3627b6d9b4e0SHong Zhang 
36289566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3629a31a438cSHong Zhang     }
36308b3fa1f7SHong Zhang 
36313b00a383SHong Zhang     /* (3) Create sequential Msub */
36329566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3633d5761cdaSHong Zhang   }
36348d2139bdSHong Zhang 
36359566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
363698b658c4SHong Zhang   aij = (Mat_SeqAIJ *)(Msub)->data;
363798b658c4SHong Zhang   ii  = aij->i;
36389566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3639a0ff6018SBarry Smith 
3640a0ff6018SBarry Smith   /*
3641a0ff6018SBarry Smith       m - number of local rows
3642a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3643a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3644a0ff6018SBarry Smith   */
36459566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
364698b658c4SHong Zhang 
36473b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36483b00a383SHong Zhang     /* (4) Create parallel newmat */
364998b658c4SHong Zhang     PetscMPIInt rank, size;
3650bcae8d28SHong Zhang     PetscInt    csize;
365198b658c4SHong Zhang 
36529566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36539566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
365400e6dbe6SBarry Smith 
3655a0ff6018SBarry Smith     /*
365600e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
365700e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3658a0ff6018SBarry Smith     */
365900e6dbe6SBarry Smith 
366000e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36619566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36626a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36639566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3664a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3665e2c4fddaSBarry Smith         nlocal = m;
36666a6a5d1dSBarry Smith       } else {
3667a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3668ab50ec6bSBarry Smith       }
3669ab50ec6bSBarry Smith     } else {
36706a6a5d1dSBarry Smith       nlocal = csize;
36716a6a5d1dSBarry Smith     }
36729566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
367300e6dbe6SBarry Smith     rstart = rend - nlocal;
3674aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
367500e6dbe6SBarry Smith 
367600e6dbe6SBarry Smith     /* next, compute all the lengths */
367798b658c4SHong Zhang     jj = aij->j;
36789566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
367900e6dbe6SBarry Smith     olens = dlens + m;
368000e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
368100e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
368200e6dbe6SBarry Smith       olen = 0;
368300e6dbe6SBarry Smith       dlen = 0;
368400e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
368515b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
368600e6dbe6SBarry Smith         else dlen++;
368700e6dbe6SBarry Smith         jj++;
368800e6dbe6SBarry Smith       }
368900e6dbe6SBarry Smith       olens[i] = olen;
369000e6dbe6SBarry Smith       dlens[i] = dlen;
369100e6dbe6SBarry Smith     }
3692b6d9b4e0SHong Zhang 
36939566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36949566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
369598b658c4SHong Zhang 
36969566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36979566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
36989566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
36999566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
37009566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
37019566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3702d5761cdaSHong Zhang 
3703d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3704a0ff6018SBarry Smith     M = *newmat;
37059566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
370608401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
37079566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3708c48de900SBarry Smith     /*
3709c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3710c48de900SBarry Smith        rather than the slower MatSetValues().
3711c48de900SBarry Smith     */
3712c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3713c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3714a0ff6018SBarry Smith   }
3715548ecf4dSHong Zhang 
37163b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37189566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
371998b658c4SHong Zhang 
372098b658c4SHong Zhang   jj = aij->j;
37219566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3722a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3723a0ff6018SBarry Smith     row = rstart + i;
372400e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
372515b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37269566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37279371c9d4SSatish Balay     jj += nz;
37289371c9d4SSatish Balay     aa += nz;
3729a0ff6018SBarry Smith   }
37309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37319566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3732a0ff6018SBarry Smith 
37339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3735fee21e36SBarry Smith 
37369566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
373798b658c4SHong Zhang 
373898b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3739fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37403b00a383SHong Zhang     *newmat = M;
37419566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubMatrix", (PetscObject)Msub));
37429566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
374398b658c4SHong Zhang 
37449566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubIScol", (PetscObject)iscol_sub));
37459566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
374698b658c4SHong Zhang 
37479566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)(*newmat), "Subcmap", (PetscObject)iscmap));
37489566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3749bcae8d28SHong Zhang 
3750bcae8d28SHong Zhang     if (iscol_local) {
37519566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)(*newmat), "ISAllGather", (PetscObject)iscol_local));
37529566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3753bcae8d28SHong Zhang     }
375498b658c4SHong Zhang   }
37553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3756a0ff6018SBarry Smith }
3757273d9f13SBarry Smith 
3758df40acb1SHong Zhang /*
3759df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3760df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3761df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3762df40acb1SHong Zhang 
376311a5261eSBarry Smith   This requires a sequential iscol with all indices.
3764df40acb1SHong Zhang */
3765d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3766d71ae5a4SJacob Faibussowitsch {
3767df40acb1SHong Zhang   PetscMPIInt rank, size;
3768df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3769df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3770df40acb1SHong Zhang   Mat         M, Mreuse;
377198b658c4SHong Zhang   MatScalar  *aa, *vwork;
3772df40acb1SHong Zhang   MPI_Comm    comm;
3773df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37740b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3775df40acb1SHong Zhang 
3776df40acb1SHong Zhang   PetscFunctionBegin;
37779566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37789566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3780df40acb1SHong Zhang 
37810b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37829566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37839566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37840b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
37851c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37860b27a90eSHong Zhang 
3787df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37889566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
378928b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37909566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3791df40acb1SHong Zhang   } else {
37929566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3793df40acb1SHong Zhang   }
3794df40acb1SHong Zhang 
3795df40acb1SHong Zhang   /*
3796df40acb1SHong Zhang       m - number of local rows
3797df40acb1SHong Zhang       n - number of columns (same on all processors)
3798df40acb1SHong Zhang       rstart - first row in new global matrix generated
3799df40acb1SHong Zhang   */
38009566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
38019566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3802df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
3803df40acb1SHong Zhang     aij = (Mat_SeqAIJ *)(Mreuse)->data;
3804df40acb1SHong Zhang     ii  = aij->i;
3805df40acb1SHong Zhang     jj  = aij->j;
3806df40acb1SHong Zhang 
3807df40acb1SHong Zhang     /*
3808df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3809df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3810df40acb1SHong Zhang     */
3811df40acb1SHong Zhang 
3812df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3813df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38149566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3815df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3816df40acb1SHong Zhang         nlocal = m;
3817df40acb1SHong Zhang       } else {
3818df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3819df40acb1SHong Zhang       }
3820df40acb1SHong Zhang     } else {
3821df40acb1SHong Zhang       nlocal = csize;
3822df40acb1SHong Zhang     }
38239566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3824df40acb1SHong Zhang     rstart = rend - nlocal;
3825aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3826df40acb1SHong Zhang 
3827df40acb1SHong Zhang     /* next, compute all the lengths */
38289566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3829df40acb1SHong Zhang     olens = dlens + m;
3830df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3831df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3832df40acb1SHong Zhang       olen = 0;
3833df40acb1SHong Zhang       dlen = 0;
3834df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3835df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3836df40acb1SHong Zhang         else dlen++;
3837df40acb1SHong Zhang         jj++;
3838df40acb1SHong Zhang       }
3839df40acb1SHong Zhang       olens[i] = olen;
3840df40acb1SHong Zhang       dlens[i] = dlen;
3841df40acb1SHong Zhang     }
38429566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38439566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38449566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38459566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38469566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38479566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3848df40acb1SHong Zhang   } else {
3849df40acb1SHong Zhang     PetscInt ml, nl;
3850df40acb1SHong Zhang 
3851df40acb1SHong Zhang     M = *newmat;
38529566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
385308401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38549566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3855df40acb1SHong Zhang     /*
3856df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3857df40acb1SHong Zhang        rather than the slower MatSetValues().
3858df40acb1SHong Zhang     */
3859df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3860df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3861df40acb1SHong Zhang   }
38629566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
3863df40acb1SHong Zhang   aij = (Mat_SeqAIJ *)(Mreuse)->data;
3864df40acb1SHong Zhang   ii  = aij->i;
3865df40acb1SHong Zhang   jj  = aij->j;
38662e5835c6SStefano Zampini 
38672e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3869df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3870df40acb1SHong Zhang     row   = rstart + i;
3871df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38729371c9d4SSatish Balay     cwork = jj;
38738e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38749371c9d4SSatish Balay     vwork = aa;
38758e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38769566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3877df40acb1SHong Zhang   }
38789566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3879df40acb1SHong Zhang 
38809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3882df40acb1SHong Zhang   *newmat = M;
3883df40acb1SHong Zhang 
3884df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3885df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38869566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38879566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3888df40acb1SHong Zhang   }
38893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3890df40acb1SHong Zhang }
3891df40acb1SHong Zhang 
3892ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3893d71ae5a4SJacob Faibussowitsch {
38946a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
3895899cda47SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii;
3896ccd8e176SBarry Smith   const PetscInt *JJ;
3897eeb24464SBarry Smith   PetscBool       nooffprocentries;
38986a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3899ccd8e176SBarry Smith 
3900ccd8e176SBarry Smith   PetscFunctionBegin;
3901aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]);
3902899cda47SBarry Smith 
39039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
39049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3905d0f46423SBarry Smith   m      = B->rmap->n;
3906d0f46423SBarry Smith   cstart = B->cmap->rstart;
3907d0f46423SBarry Smith   cend   = B->cmap->rend;
3908d0f46423SBarry Smith   rstart = B->rmap->rstart;
3909899cda47SBarry Smith 
39109566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3911ccd8e176SBarry Smith 
391276bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39138f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3914ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39158e3a54c0SPierre Jolivet       JJ  = PetscSafePointerPlusOffset(J, Ii[i]);
391608401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
391708401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
391808401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3919ecc77c7aSBarry Smith     }
392076bd3646SJed Brown   }
3921ecc77c7aSBarry Smith 
39228f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3923b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39248e3a54c0SPierre Jolivet     JJ      = PetscSafePointerPlusOffset(J, Ii[i]);
3925ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3926ccd8e176SBarry Smith     d       = 0;
39270daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39280daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3929ccd8e176SBarry Smith     }
3930ccd8e176SBarry Smith     d_nnz[i] = d;
3931ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3932ccd8e176SBarry Smith   }
39339566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39349566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3935ccd8e176SBarry Smith 
39368f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3937ccd8e176SBarry Smith     ii = i + rstart;
39388e3a54c0SPierre Jolivet     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES));
3939ccd8e176SBarry Smith   }
3940eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3941eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3944eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3945ccd8e176SBarry Smith 
39466a3d2595SBarry Smith   /* count number of entries below block diagonal */
39476a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39486a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39496a3d2595SBarry Smith   Aij->ld = ld;
39506a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39516a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39526a3d2595SBarry Smith     j   = 0;
3953ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39546a3d2595SBarry Smith     ld[i] = j;
3955720a2405SPierre Jolivet     if (J) J += nnz;
39566a3d2595SBarry Smith   }
39576a3d2595SBarry Smith 
39589566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3960ccd8e176SBarry Smith }
3961ccd8e176SBarry Smith 
39621eea217eSSatish Balay /*@
396311a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3964ccd8e176SBarry Smith   (the default parallel PETSc format).
3965ccd8e176SBarry Smith 
3966d083f849SBarry Smith   Collective
3967ccd8e176SBarry Smith 
3968ccd8e176SBarry Smith   Input Parameters:
3969a1661176SMatthew Knepley + B - the matrix
3970ccd8e176SBarry Smith . i - the indices into j for the start of each local row (starts with zero)
39710daa03b5SJed Brown . j - the column indices for each local row (starts with zero)
3972ccd8e176SBarry Smith - v - optional values in the matrix
3973ccd8e176SBarry Smith 
3974ccd8e176SBarry Smith   Level: developer
3975ccd8e176SBarry Smith 
397612251496SSatish Balay   Notes:
39772ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39782ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
397911a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
398012251496SSatish Balay 
39812ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
398212251496SSatish Balay 
3983a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3984a4bd8bc0SBarry Smith 
3985a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3986a4bd8bc0SBarry Smith 
3987a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3988a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3989a4bd8bc0SBarry Smith 
399012251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
399112251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3992c5e4d11fSDmitry Karpeev   as shown
399327430b45SBarry Smith .vb
399427430b45SBarry Smith         1 0 0
399527430b45SBarry Smith         2 0 3     P0
399627430b45SBarry Smith        -------
399727430b45SBarry Smith         4 5 6     P1
399827430b45SBarry Smith 
399927430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
400027430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
400127430b45SBarry Smith         j =  {0,0,2}  [size = 3]
400227430b45SBarry Smith         v =  {1,2,3}  [size = 3]
400327430b45SBarry Smith 
400427430b45SBarry Smith      Process1 [P1] rows_owned=[2]
400527430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
400627430b45SBarry Smith         j =  {0,1,2}  [size = 3]
400727430b45SBarry Smith         v =  {4,5,6}  [size = 3]
400827430b45SBarry Smith .ve
400912251496SSatish Balay 
4010fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4011a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4012ccd8e176SBarry Smith @*/
4013d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4014d71ae5a4SJacob Faibussowitsch {
4015ccd8e176SBarry Smith   PetscFunctionBegin;
4016cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4018ccd8e176SBarry Smith }
4019ccd8e176SBarry Smith 
4020273d9f13SBarry Smith /*@C
402111a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4022273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4023273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
402420f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4025273d9f13SBarry Smith 
4026d083f849SBarry Smith   Collective
4027273d9f13SBarry Smith 
4028273d9f13SBarry Smith   Input Parameters:
40291c4f3114SJed Brown + B     - the matrix
4030273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4031273d9f13SBarry Smith            (same value is used for all local rows)
4032273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4033273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40342ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4035273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40363287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40373287b5eaSJed Brown            the diagonal entry even if it is zero.
4038273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4039273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4040273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4041273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40422ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4043273d9f13SBarry Smith            structure. The size of this array is equal to the number
4044273d9f13SBarry Smith            of local rows, i.e 'm'.
4045273d9f13SBarry Smith 
40462920cce0SJacob Faibussowitsch   Example Usage:
404727430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
404827430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
404927430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
405027430b45SBarry Smith   as follows
405127430b45SBarry Smith 
405227430b45SBarry Smith .vb
405327430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
405427430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
405527430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
405627430b45SBarry Smith     -------------------------------------
405727430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
405827430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
405927430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
406027430b45SBarry Smith     -------------------------------------
406127430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
406227430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
406327430b45SBarry Smith .ve
406427430b45SBarry Smith 
406527430b45SBarry Smith   This can be represented as a collection of submatrices as
406627430b45SBarry Smith .vb
406727430b45SBarry Smith       A B C
406827430b45SBarry Smith       D E F
406927430b45SBarry Smith       G H I
407027430b45SBarry Smith .ve
407127430b45SBarry Smith 
407227430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
407327430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
407427430b45SBarry Smith 
407527430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407627430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407727430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
407827430b45SBarry Smith 
407927430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
408027430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
408127430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
408227430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
408327430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
408427430b45SBarry Smith   matrix, ans [DF] as another `MATSEQAIJ` matrix.
408527430b45SBarry Smith 
408620f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
408720f4b53cSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
408827430b45SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
408920f4b53cSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
409027430b45SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
409120f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
409227430b45SBarry Smith .vb
409327430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
409427430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
409527430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
409627430b45SBarry Smith .ve
409720f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
409827430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
409927430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
410027430b45SBarry Smith   34 values.
410127430b45SBarry Smith 
410220f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
410327430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
410420f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
410527430b45SBarry Smith .vb
410627430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
410727430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
410827430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
410927430b45SBarry Smith .ve
411027430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
411127430b45SBarry Smith   hence pre-allocation is perfect.
411227430b45SBarry Smith 
411327430b45SBarry Smith   Level: intermediate
411427430b45SBarry Smith 
411527430b45SBarry Smith   Notes:
411649a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
411749a6f317SBarry Smith 
411827430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41190598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4120651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4121273d9f13SBarry Smith 
4122273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4123273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4124273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4125273d9f13SBarry Smith 
4126273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4127a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4128a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4129a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4130a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4131a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4132a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4133a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4134a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4135273d9f13SBarry Smith 
41362ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4137273d9f13SBarry Smith 
413827430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4139aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
414027430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4141aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4142aa95bbe8SBarry Smith 
41431cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4144a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4145273d9f13SBarry Smith @*/
4146d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4147d71ae5a4SJacob Faibussowitsch {
4148273d9f13SBarry Smith   PetscFunctionBegin;
41496ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41506ba663aaSJed Brown   PetscValidType(B, 1);
4151cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4153273d9f13SBarry Smith }
4154273d9f13SBarry Smith 
415558d36128SBarry Smith /*@
415611a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41578f8f2f0dSBarry Smith   CSR format for the local rows.
41582fb0ec9aSBarry Smith 
4159d083f849SBarry Smith   Collective
41602fb0ec9aSBarry Smith 
41612fb0ec9aSBarry Smith   Input Parameters:
41622fb0ec9aSBarry Smith + comm - MPI communicator
416311a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41642fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
416511a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
41662fb0ec9aSBarry Smith        calculated if N is given) For square matrices n is almost always m.
416711a5261eSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
416811a5261eSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4169483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41702fb0ec9aSBarry Smith . j    - column indices
4171f1f2ae84SBarry Smith - a    - optional matrix values
41722fb0ec9aSBarry Smith 
41732fb0ec9aSBarry Smith   Output Parameter:
41742fb0ec9aSBarry Smith . mat - the matrix
417503bfb495SBarry Smith 
41762fb0ec9aSBarry Smith   Level: intermediate
41772fb0ec9aSBarry Smith 
41782fb0ec9aSBarry Smith   Notes:
41792ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
41802fb0ec9aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
41812ef1f0ffSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41822fb0ec9aSBarry Smith 
41832ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
418412251496SSatish Balay 
4185a4bd8bc0SBarry Smith   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArrays()`
4186a4bd8bc0SBarry Smith 
4187a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
4188a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4189a4bd8bc0SBarry Smith 
419012251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
419112251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
4192c5e4d11fSDmitry Karpeev   as shown
41932ef1f0ffSBarry Smith .vb
41942ef1f0ffSBarry Smith         1 0 0
41952ef1f0ffSBarry Smith         2 0 3     P0
41962ef1f0ffSBarry Smith        -------
41972ef1f0ffSBarry Smith         4 5 6     P1
41988f8f2f0dSBarry Smith 
41992ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
42002ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
42012ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
42022ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
42032fb0ec9aSBarry Smith 
42042ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
42052ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
42062ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
42072ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
42082ef1f0ffSBarry Smith .ve
42092ef1f0ffSBarry Smith 
42101cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIK`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4211a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42122fb0ec9aSBarry Smith @*/
4213d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4214d71ae5a4SJacob Faibussowitsch {
42152fb0ec9aSBarry Smith   PetscFunctionBegin;
421608401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
421708401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42189566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42199566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42209566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42219566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42229566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42242fb0ec9aSBarry Smith }
42252fb0ec9aSBarry Smith 
42268f8f2f0dSBarry Smith /*@
422711a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42282ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42292ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42306a3d2595SBarry Smith 
42316a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42328f8f2f0dSBarry Smith 
42338f8f2f0dSBarry Smith   Collective
42348f8f2f0dSBarry Smith 
42358f8f2f0dSBarry Smith   Input Parameters:
42368f8f2f0dSBarry Smith + mat - the matrix
423711a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42388f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
423911a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42408f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
424111a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
424211a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42438f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42448f8f2f0dSBarry Smith . J   - column indices
42458f8f2f0dSBarry Smith - v   - matrix values
42468f8f2f0dSBarry Smith 
42472ef1f0ffSBarry Smith   Level: deprecated
42488f8f2f0dSBarry Smith 
42491cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4250a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42518f8f2f0dSBarry Smith @*/
4252d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4253d71ae5a4SJacob Faibussowitsch {
42546a3d2595SBarry Smith   PetscInt        nnz, i;
42558f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42568f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4257fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4258fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42598f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42606a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42616a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42628f8f2f0dSBarry Smith 
42638f8f2f0dSBarry Smith   PetscFunctionBegin;
4264aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
426508401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
426608401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
426708401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42688f8f2f0dSBarry Smith 
42699566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42709566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42718f8f2f0dSBarry Smith 
42728f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42734c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42744c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42754c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42764c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42774c17f1ccSBarry Smith       }
42784c17f1ccSBarry Smith     }
42798f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42808f8f2f0dSBarry Smith     Iii = Ii[i];
42818f8f2f0dSBarry Smith     ldi = ld[i];
42828f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42839566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42849566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42859566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42868f8f2f0dSBarry Smith     ad += md;
42878f8f2f0dSBarry Smith     ao += nnz - md;
42888f8f2f0dSBarry Smith   }
42898f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42908f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42939566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42949566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42959566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42969566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42979566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
42988f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
42993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43008f8f2f0dSBarry Smith }
43018f8f2f0dSBarry Smith 
43026a3d2595SBarry Smith /*@
430311a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
43046a3d2595SBarry Smith 
43056a3d2595SBarry Smith   Collective
43066a3d2595SBarry Smith 
43076a3d2595SBarry Smith   Input Parameters:
43086a3d2595SBarry Smith + mat - the matrix
43096a3d2595SBarry Smith - v   - matrix values, stored by row
43106a3d2595SBarry Smith 
43116a3d2595SBarry Smith   Level: intermediate
43126a3d2595SBarry Smith 
4313a4bd8bc0SBarry Smith   Notes:
43146a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43156a3d2595SBarry Smith 
4316a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4317a4bd8bc0SBarry Smith 
43181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4319a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43206a3d2595SBarry Smith @*/
4321d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4322d71ae5a4SJacob Faibussowitsch {
43236a3d2595SBarry Smith   PetscInt        nnz, i, m;
43246a3d2595SBarry Smith   PetscBool       nooffprocentries;
43256a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43266a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43276a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43286a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43296a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43306a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43316a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43326a3d2595SBarry Smith 
43336a3d2595SBarry Smith   PetscFunctionBegin;
43346a3d2595SBarry Smith   m = mat->rmap->n;
43356a3d2595SBarry Smith 
43366a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43376a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43386a3d2595SBarry Smith   Iii = 0;
43396a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43406a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43416a3d2595SBarry Smith     ldi = ld[i];
43426a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43436a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43446a3d2595SBarry Smith     ad += md;
4345810441c8SPierre Jolivet     if (ao) {
4346810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4347810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43486a3d2595SBarry Smith       ao += nnz - md;
4349810441c8SPierre Jolivet     }
43506a3d2595SBarry Smith     Iii += nnz;
43516a3d2595SBarry Smith   }
43526a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43536a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43546a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43556a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43566a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43576a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43586a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43596a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43606a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43616a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43636a3d2595SBarry Smith }
43646a3d2595SBarry Smith 
4365273d9f13SBarry Smith /*@C
436611a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4367273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4368273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43692ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4370273d9f13SBarry Smith 
4371d083f849SBarry Smith   Collective
4372273d9f13SBarry Smith 
4373273d9f13SBarry Smith   Input Parameters:
4374273d9f13SBarry Smith + comm  - MPI communicator
437511a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4376273d9f13SBarry Smith            This value should be the same as the local size used in creating the
4377273d9f13SBarry Smith            y vector for the matrix-vector product y = Ax.
4378273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
437945f401ebSJose E. Roman        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4380273d9f13SBarry Smith        calculated if N is given) For square matrices n is almost always m.
438111a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
438211a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4383273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4384273d9f13SBarry Smith            (same value is used for all local rows)
4385273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4386273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
43872ef1f0ffSBarry Smith            or `NULL`, if `d_nz` is used to specify the nonzero structure.
4388273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
4389273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4390273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4391273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4392273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
43932ef1f0ffSBarry Smith            each row) or `NULL`, if `o_nz` is used to specify the nonzero
4394273d9f13SBarry Smith            structure. The size of this array is equal to the number
4395273d9f13SBarry Smith            of local rows, i.e 'm'.
4396273d9f13SBarry Smith 
4397273d9f13SBarry Smith   Output Parameter:
4398273d9f13SBarry Smith . A - the matrix
4399273d9f13SBarry Smith 
440027430b45SBarry Smith   Options Database Keys:
440127430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
440227430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
440327430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
440427430b45SBarry Smith         See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the vecscatter be viewed as a matrix.
440527430b45SBarry Smith         Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
440627430b45SBarry Smith 
44072ef1f0ffSBarry Smith   Level: intermediate
44082ef1f0ffSBarry Smith 
440927430b45SBarry Smith   Notes:
441077433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4411f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
441211a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4413175b88e8SBarry Smith 
441449a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
441549a6f317SBarry Smith 
44162ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44172ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4418273d9f13SBarry Smith   storage requirements for this matrix.
4419273d9f13SBarry Smith 
442011a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4421273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4422273d9f13SBarry Smith   that argument.
4423273d9f13SBarry Smith 
4424273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4425273d9f13SBarry Smith   (possibly both).
4426273d9f13SBarry Smith 
442733a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
442833a7c187SSatish Balay   first m0 rows belong to process 0, the next m1 rows belong to
442933a7c187SSatish Balay   process 1, the next m2 rows belong to process 2 etc.. where
443033a7c187SSatish Balay   m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores
443133a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4432273d9f13SBarry Smith 
443333a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
443433a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4435df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
443633a7c187SSatish Balay 
443733a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
443833a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
443933a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
444033a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
444133a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
444233a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
444333a7c187SSatish Balay   illustrates this concept.
444433a7c187SSatish Balay 
444533a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
444633a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
444733a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
444833a7c187SSatish Balay   local matrix (a rectangular submatrix).
4449273d9f13SBarry Smith 
44502ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4451273d9f13SBarry Smith 
445297d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44532ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4454da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4455da57b5cdSKarl Rupp .vb
44562ef1f0ffSBarry Smith   MatCreate(..., &A);
44572ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44582ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44592ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4460da57b5cdSKarl Rupp .ve
446197d05335SKris Buschelman 
4462273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4463273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4464273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4465273d9f13SBarry Smith 
44662920cce0SJacob Faibussowitsch   Example Usage:
4467273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4468273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4469273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4470efc377ccSKarl Rupp   as follows
4471273d9f13SBarry Smith 
4472273d9f13SBarry Smith .vb
4473273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4474273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4475273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4476273d9f13SBarry Smith     -------------------------------------
4477273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4478273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4479273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4480273d9f13SBarry Smith     -------------------------------------
4481273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4482273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4483273d9f13SBarry Smith .ve
4484273d9f13SBarry Smith 
4485da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4486273d9f13SBarry Smith 
4487273d9f13SBarry Smith .vb
4488273d9f13SBarry Smith       A B C
4489273d9f13SBarry Smith       D E F
4490273d9f13SBarry Smith       G H I
4491273d9f13SBarry Smith .ve
4492273d9f13SBarry Smith 
4493273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4494273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4495273d9f13SBarry Smith 
4496273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4497273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4498273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4499273d9f13SBarry Smith 
4500273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4501273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4502273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4503273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
450427430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
4505273d9f13SBarry Smith   matrix, ans [DF] as another SeqAIJ matrix.
4506273d9f13SBarry Smith 
45072ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45082ef1f0ffSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
4509273d9f13SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
45102ef1f0ffSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
4511273d9f13SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45122ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4513273d9f13SBarry Smith .vb
451427430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
451527430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
451627430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4517273d9f13SBarry Smith .ve
45182ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4519273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4520273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4521273d9f13SBarry Smith   34 values.
4522273d9f13SBarry Smith 
45232ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4524a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4525da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4526273d9f13SBarry Smith .vb
452727430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
452827430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
452927430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4530273d9f13SBarry Smith .ve
4531273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4532273d9f13SBarry Smith   hence pre-allocation is perfect.
4533273d9f13SBarry Smith 
45341cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4535db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`
4536273d9f13SBarry Smith @*/
4537d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4538d71ae5a4SJacob Faibussowitsch {
4539b1d57f15SBarry Smith   PetscMPIInt size;
4540273d9f13SBarry Smith 
4541273d9f13SBarry Smith   PetscFunctionBegin;
45429566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45439566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45449566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4545273d9f13SBarry Smith   if (size > 1) {
45469566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45479566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4548273d9f13SBarry Smith   } else {
45499566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45509566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4551273d9f13SBarry Smith   }
45523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4553273d9f13SBarry Smith }
4554195d93cdSBarry Smith 
45550b98dbb4SBarry Smith /*MC
45560b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix
45570b98dbb4SBarry Smith 
45580b98dbb4SBarry Smith     Synopsis:
45590b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45600b98dbb4SBarry Smith 
45610b98dbb4SBarry Smith     Not Collective
45620b98dbb4SBarry Smith 
45630b98dbb4SBarry Smith     Input Parameter:
45640b98dbb4SBarry Smith .   A - the `MATMPIAIJ` matrix
45650b98dbb4SBarry Smith 
45660b98dbb4SBarry Smith     Output Parameters:
45670b98dbb4SBarry Smith +   Ad - the diagonal portion of the matrix
45684cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45692ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45700b98dbb4SBarry Smith -   ierr - error code
45710b98dbb4SBarry Smith 
45720b98dbb4SBarry Smith      Level: advanced
45730b98dbb4SBarry Smith 
45740b98dbb4SBarry Smith     Note:
45750b98dbb4SBarry Smith     Use  `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45760b98dbb4SBarry Smith 
45771cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()`
45780b98dbb4SBarry Smith M*/
45790b98dbb4SBarry Smith 
45800b98dbb4SBarry Smith /*MC
45810b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45820b98dbb4SBarry Smith 
45830b98dbb4SBarry Smith     Synopsis:
45840b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45850b98dbb4SBarry Smith 
45860b98dbb4SBarry Smith     Not Collective
45870b98dbb4SBarry Smith 
45880b98dbb4SBarry Smith     Input Parameters:
45890b98dbb4SBarry Smith +   A - the `MATMPIAIJ` matrix
45900b98dbb4SBarry Smith .   Ad - the diagonal portion of the matrix
45914cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45922ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45930b98dbb4SBarry Smith -   ierr - error code
45940b98dbb4SBarry Smith 
45950b98dbb4SBarry Smith      Level: advanced
45960b98dbb4SBarry Smith 
45971cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()`
45980b98dbb4SBarry Smith M*/
45990b98dbb4SBarry Smith 
4600127ca0efSMatthew Knepley /*@C
46010ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4602127ca0efSMatthew Knepley 
46032ef1f0ffSBarry Smith   Not Collective
4604127ca0efSMatthew Knepley 
4605127ca0efSMatthew Knepley   Input Parameter:
460611a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4607127ca0efSMatthew Knepley 
4608127ca0efSMatthew Knepley   Output Parameters:
460911a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
461011a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
46112ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4612127ca0efSMatthew Knepley 
46130ab4885dSBarry Smith   Level: intermediate
46140ab4885dSBarry Smith 
461511a5261eSBarry Smith   Note:
46162ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
46172ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
46182ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4619127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4620127ca0efSMatthew Knepley 
4621fe59aa6dSJacob Faibussowitsch   Fortran Notes:
46220ab4885dSBarry Smith   `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()`
4623127ca0efSMatthew Knepley 
4624fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4625127ca0efSMatthew Knepley @*/
4626d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4627d71ae5a4SJacob Faibussowitsch {
4628195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
462904cf37c7SBarry Smith   PetscBool   flg;
4630b1d57f15SBarry Smith 
4631195d93cdSBarry Smith   PetscFunctionBegin;
46329566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
463328b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
463421e72a00SBarry Smith   if (Ad) *Ad = a->A;
463521e72a00SBarry Smith   if (Ao) *Ao = a->B;
463621e72a00SBarry Smith   if (colmap) *colmap = a->garray;
46373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4638195d93cdSBarry Smith }
4639a2243be0SBarry Smith 
4640d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4641d71ae5a4SJacob Faibussowitsch {
4642110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
46439b8102ccSHong Zhang   PetscInt    *indx;
4644110bb6e1SHong Zhang   PetscScalar *values;
4645421ddf4dSJunchao Zhang   MatType      rootType;
46469b8102ccSHong Zhang 
46479b8102ccSHong Zhang   PetscFunctionBegin;
46489566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4649110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4650110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4651110bb6e1SHong Zhang 
465248a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4653a22543b6SHong Zhang     /* Check sum(n) = N */
46541c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
465508401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4656a22543b6SHong Zhang 
46579566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46589b8102ccSHong Zhang     rstart -= m;
46599b8102ccSHong Zhang 
4660d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46619b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46629566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46639566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46649566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46659b8102ccSHong Zhang     }
46669b8102ccSHong Zhang 
46679566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46689566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46699566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46709566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46719566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46729566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46739566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46749566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4675d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46769566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46779b8102ccSHong Zhang   }
46789b8102ccSHong Zhang 
4679110bb6e1SHong Zhang   /* numeric phase */
46809566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46819b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46829566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46839b8102ccSHong Zhang     Ii = i + rstart;
46849566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46859566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46869b8102ccSHong Zhang   }
46879566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4690c5d6d63eSBarry Smith }
4691c5d6d63eSBarry Smith 
4692d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data)
4693d71ae5a4SJacob Faibussowitsch {
46946718818eSStefano Zampini   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data;
469551a7d1a8SHong Zhang 
469651a7d1a8SHong Zhang   PetscFunctionBegin;
46973ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
46989566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
46999566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
47009566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
47019566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
47029566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
47039566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
47049566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
47059566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
47069566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
47079566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
47089566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
47099566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
47109566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
47119566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
47123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
471351a7d1a8SHong Zhang }
471451a7d1a8SHong Zhang 
4715c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4716c6db04a5SJed Brown #include <petscbt.h>
47174ebed01fSBarry Smith 
4718d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4719d71ae5a4SJacob Faibussowitsch {
4720ce94432eSBarry Smith   MPI_Comm             comm;
472155d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4722b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
4723a2ea699eSBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj;
4724b1d57f15SBarry Smith   PetscInt             proc, m;
4725b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
4726b1d57f15SBarry Smith   PetscInt             k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4727b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
472855d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
472955d1abb9SHong Zhang   MPI_Status          *status;
4730fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4731dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
473255d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4733776b82aeSLisandro Dalcin   PetscContainer       container;
473455d1abb9SHong Zhang 
473555d1abb9SHong Zhang   PetscFunctionBegin;
47369566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
47379566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
47383c2c1871SHong Zhang 
47399566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47409566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
474155d1abb9SHong Zhang 
47429566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
474328b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
47449566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
47459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4746fff043a9SJunchao Zhang   aa = a_a;
4747bf0cc555SLisandro Dalcin 
474855d1abb9SHong Zhang   bi     = merge->bi;
474955d1abb9SHong Zhang   bj     = merge->bj;
475055d1abb9SHong Zhang   buf_ri = merge->buf_ri;
475155d1abb9SHong Zhang   buf_rj = merge->buf_rj;
475255d1abb9SHong Zhang 
47539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47547a2fc3feSBarry Smith   owners = merge->rowmap->range;
475555d1abb9SHong Zhang   len_s  = merge->len_s;
475655d1abb9SHong Zhang 
475755d1abb9SHong Zhang   /* send and recv matrix values */
47589566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47599566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
476055d1abb9SHong Zhang 
47619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
476255d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
476355d1abb9SHong Zhang     if (!len_s[proc]) continue;
476455d1abb9SHong Zhang     i = owners[proc];
47659566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
476655d1abb9SHong Zhang     k++;
476755d1abb9SHong Zhang   }
476855d1abb9SHong Zhang 
47699566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47709566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47719566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
477255d1abb9SHong Zhang 
47739566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47749566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
477555d1abb9SHong Zhang 
477655d1abb9SHong Zhang   /* insert mat values of mpimat */
47779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
477955d1abb9SHong Zhang 
478055d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
478155d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
478255d1abb9SHong Zhang     nrows       = *(buf_ri_k[k]);
478355d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4784a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
478555d1abb9SHong Zhang   }
478655d1abb9SHong Zhang 
478755d1abb9SHong Zhang   /* set values of ba */
47887a2fc3feSBarry Smith   m = merge->rowmap->n;
478955d1abb9SHong Zhang   for (i = 0; i < m; i++) {
479055d1abb9SHong Zhang     arow = owners[rank] + i;
479155d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
479255d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47939566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
479455d1abb9SHong Zhang 
479555d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
479655d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
479755d1abb9SHong Zhang     aj     = a->j + ai[arow];
4798fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
479955d1abb9SHong Zhang     nextaj = 0;
480055d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
480155d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
480255d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
480355d1abb9SHong Zhang       }
480455d1abb9SHong Zhang     }
480555d1abb9SHong Zhang 
480655d1abb9SHong Zhang     /* add received vals into ba */
480755d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
480855d1abb9SHong Zhang       /* i-th row */
480955d1abb9SHong Zhang       if (i == *nextrow[k]) {
481055d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
481155d1abb9SHong Zhang         aj     = buf_rj[k] + *(nextai[k]);
481255d1abb9SHong Zhang         aa     = abuf_r[k] + *(nextai[k]);
481355d1abb9SHong Zhang         nextaj = 0;
481455d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
481555d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
481655d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
481755d1abb9SHong Zhang           }
481855d1abb9SHong Zhang         }
48199371c9d4SSatish Balay         nextrow[k]++;
48209371c9d4SSatish Balay         nextai[k]++;
482155d1abb9SHong Zhang       }
482255d1abb9SHong Zhang     }
48239566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
482455d1abb9SHong Zhang   }
48259566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
48269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
48279566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
482855d1abb9SHong Zhang 
48299566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
48309566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
48319566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
48329566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
48339566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
48343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
483555d1abb9SHong Zhang }
483638f152feSBarry Smith 
4837d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4838d71ae5a4SJacob Faibussowitsch {
483955a3bba9SHong Zhang   Mat                  B_mpi;
4840c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4841b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4842b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4843d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
4844a2f3521dSMark F. Adams   PetscInt             len, proc, *dnz, *onz, bs, cbs;
4845c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4846b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
484755d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
484858cb9c82SHong Zhang   MPI_Status          *status;
48490298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4850be0fcf8dSHong Zhang   PetscBT              lnkbt;
485151a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4852776b82aeSLisandro Dalcin   PetscContainer       container;
485302c68681SHong Zhang 
4854e5f2cdd8SHong Zhang   PetscFunctionBegin;
48559566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48563c2c1871SHong Zhang 
485738f152feSBarry Smith   /* make sure it is a PETSc comm */
48589566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48599566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48609566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
486155d1abb9SHong Zhang 
48629566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4864e5f2cdd8SHong Zhang 
48656abd8857SHong Zhang   /* determine row ownership */
48669566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48679566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48689566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48699566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48709566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
487355d1abb9SHong Zhang 
48747a2fc3feSBarry Smith   m      = merge->rowmap->n;
48757a2fc3feSBarry Smith   owners = merge->rowmap->range;
48766abd8857SHong Zhang 
48776abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48783e06a4e6SHong Zhang   len_s = merge->len_s;
487951a7d1a8SHong Zhang 
48802257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4881c2234fe3SHong Zhang   merge->nsend = 0;
4882409913e3SHong Zhang   for (proc = 0; proc < size; proc++) {
48832257cef7SHong Zhang     len_si[proc] = 0;
48843e06a4e6SHong Zhang     if (proc == rank) {
48856abd8857SHong Zhang       len_s[proc] = 0;
48863e06a4e6SHong Zhang     } else {
488702c68681SHong Zhang       len_si[proc] = owners[proc + 1] - owners[proc] + 1;
48883e06a4e6SHong Zhang       len_s[proc]  = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */
48893e06a4e6SHong Zhang     }
48903e06a4e6SHong Zhang     if (len_s[proc]) {
4891c2234fe3SHong Zhang       merge->nsend++;
48922257cef7SHong Zhang       nrows = 0;
48932257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48942257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48952257cef7SHong Zhang       }
48962257cef7SHong Zhang       len_si[proc] = 2 * (nrows + 1);
48972257cef7SHong Zhang       len += len_si[proc];
4898409913e3SHong Zhang     }
489958cb9c82SHong Zhang   }
4900409913e3SHong Zhang 
49012257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
49029566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
49039566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4904671beff6SHong Zhang 
49053e06a4e6SHong Zhang   /* post the Irecv of j-structure */
49069566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
49079566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
490802c68681SHong Zhang 
49093e06a4e6SHong Zhang   /* post the Isend of j-structure */
49109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
49113e06a4e6SHong Zhang 
49122257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
4913409913e3SHong Zhang     if (!len_s[proc]) continue;
491402c68681SHong Zhang     i = owners[proc];
49159566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
491651a7d1a8SHong Zhang     k++;
491751a7d1a8SHong Zhang   }
491851a7d1a8SHong Zhang 
49193e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
49209566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
49219566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
492202c68681SHong Zhang 
492302c68681SHong Zhang   /* send and recv i-structure */
49249566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
49259566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
492602c68681SHong Zhang 
49279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
49283e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
49292257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
493002c68681SHong Zhang     if (!len_s[proc]) continue;
49313e06a4e6SHong Zhang     /* form outgoing message for i-structure:
49323e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
49333e06a4e6SHong Zhang                [1:nrows]:           row index (global)
49343e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
49353e06a4e6SHong Zhang     */
49362257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
49373e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
49383e06a4e6SHong Zhang     buf_si[0]   = nrows;
49393e06a4e6SHong Zhang     buf_si_i[0] = 0;
49403e06a4e6SHong Zhang     nrows       = 0;
49413e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
49423e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
49433e06a4e6SHong Zhang       if (anzi) {
49443e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
49453e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
49463e06a4e6SHong Zhang         nrows++;
49473e06a4e6SHong Zhang       }
49483e06a4e6SHong Zhang     }
49499566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
495002c68681SHong Zhang     k++;
49512257cef7SHong Zhang     buf_si += len_si[proc];
495202c68681SHong Zhang   }
49532257cef7SHong Zhang 
49549566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49559566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
495602c68681SHong Zhang 
49579566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
495848a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49593e06a4e6SHong Zhang 
49609566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49619566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49629566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49639566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49649566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49659566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49669566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
496758cb9c82SHong Zhang 
4968bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
496958cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
497158cb9c82SHong Zhang   bi[0] = 0;
497258cb9c82SHong Zhang 
4973be0fcf8dSHong Zhang   /* create and initialize a linked list */
4974be0fcf8dSHong Zhang   nlnk = N + 1;
49759566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
497658cb9c82SHong Zhang 
4977bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4978bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49799566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49802205254eSKarl Rupp 
498158cb9c82SHong Zhang   current_space = free_space;
498258cb9c82SHong Zhang 
4983bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49851d79065fSBarry Smith 
49863e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49872257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49883e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49893e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4990a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49913e06a4e6SHong Zhang   }
49922257cef7SHong Zhang 
4993d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4994bcc1bcd5SHong Zhang   len = 0;
499558cb9c82SHong Zhang   for (i = 0; i < m; i++) {
499658cb9c82SHong Zhang     bnzi = 0;
499758cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
499858cb9c82SHong Zhang     arow = owners[rank] + i;
499958cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
500058cb9c82SHong Zhang     aj   = a->j + ai[arow];
50019566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
500258cb9c82SHong Zhang     bnzi += nlnk;
500358cb9c82SHong Zhang     /* add received col data into lnk */
500451a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
500555d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
50063e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
50073e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
50089566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
50093e06a4e6SHong Zhang         bnzi += nlnk;
50109371c9d4SSatish Balay         nextrow[k]++;
50119371c9d4SSatish Balay         nextai[k]++;
50123e06a4e6SHong Zhang       }
501358cb9c82SHong Zhang     }
5014bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
501558cb9c82SHong Zhang 
501658cb9c82SHong Zhang     /* if free space is not available, make more free space */
501748a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
501858cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
50199566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
50209566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
5021bcc1bcd5SHong Zhang 
502258cb9c82SHong Zhang     current_space->array += bnzi;
502358cb9c82SHong Zhang     current_space->local_used += bnzi;
502458cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
502558cb9c82SHong Zhang 
502658cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
502758cb9c82SHong Zhang   }
5028bcc1bcd5SHong Zhang 
50299566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
5030bcc1bcd5SHong Zhang 
50319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
50329566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
50339566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
5034409913e3SHong Zhang 
5035bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
50369566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
50379566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
503854b84b50SHong Zhang   if (n == PETSC_DECIDE) {
50399566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
504054b84b50SHong Zhang   } else {
50419566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
504254b84b50SHong Zhang   }
50439566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
50449566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
50459566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
5046d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
50479566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
504858cb9c82SHong Zhang 
504990431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
50506abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5051affca5deSHong Zhang   merge->bi        = bi;
5052affca5deSHong Zhang   merge->bj        = bj;
505302c68681SHong Zhang   merge->buf_ri    = buf_ri;
505402c68681SHong Zhang   merge->buf_rj    = buf_rj;
50550298fd71SBarry Smith   merge->coi       = NULL;
50560298fd71SBarry Smith   merge->coj       = NULL;
50570298fd71SBarry Smith   merge->owners_co = NULL;
5058affca5deSHong Zhang 
50599566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5060bf0cc555SLisandro Dalcin 
5061affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50629566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50639566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
50649566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50659566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50669566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5067affca5deSHong Zhang   *mpimat = B_mpi;
506838f152feSBarry Smith 
50699566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5071e5f2cdd8SHong Zhang }
507225616d81SHong Zhang 
5073d4036a1aSHong Zhang /*@C
507411a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5075d4036a1aSHong Zhang   matrices from each processor
5076d4036a1aSHong Zhang 
5077d083f849SBarry Smith   Collective
5078d4036a1aSHong Zhang 
5079d4036a1aSHong Zhang   Input Parameters:
5080d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5081d4036a1aSHong Zhang . seqmat - the input sequential matrices
508211a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
508311a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
508411a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5085d4036a1aSHong Zhang 
5086d4036a1aSHong Zhang   Output Parameter:
5087d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5088d4036a1aSHong Zhang 
5089d4036a1aSHong Zhang   Level: advanced
5090d4036a1aSHong Zhang 
509111a5261eSBarry Smith   Note:
5092d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5093d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
509411a5261eSBarry Smith   destroyed when mpimat is destroyed. Call `PetscObjectQuery()` to access seqmat.
50952ef1f0ffSBarry Smith 
50961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5097d4036a1aSHong Zhang @*/
5098d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5099d71ae5a4SJacob Faibussowitsch {
51007e63b356SHong Zhang   PetscMPIInt size;
510155d1abb9SHong Zhang 
510255d1abb9SHong Zhang   PetscFunctionBegin;
51039566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
51047e63b356SHong Zhang   if (size == 1) {
51059566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
51067e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
51079566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
51087e63b356SHong Zhang     } else {
51099566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
51107e63b356SHong Zhang     }
51119566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51123ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
51137e63b356SHong Zhang   }
51149566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
511548a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
51169566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
51179566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
511955d1abb9SHong Zhang }
51204ebed01fSBarry Smith 
5121bc08b0f1SBarry Smith /*@
51222920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
51238a9c020eSBarry Smith 
51248a9c020eSBarry Smith   Not Collective
51258a9c020eSBarry Smith 
51262fe279fdSBarry Smith   Input Parameter:
512720f4b53cSBarry Smith . A - the matrix
51288a9c020eSBarry Smith 
51298a9c020eSBarry Smith   Output Parameter:
51308a9c020eSBarry Smith . A_loc - the local sequential matrix generated
51318a9c020eSBarry Smith 
51328a9c020eSBarry Smith   Level: developer
51338a9c020eSBarry Smith 
51348a9c020eSBarry Smith   Notes:
51352920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
51362920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
51372920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
51382920cce0SJacob Faibussowitsch 
513911a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51408a9c020eSBarry Smith 
51412920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
51422920cce0SJacob Faibussowitsch 
514311a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
51448a9c020eSBarry Smith 
51451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
51468a9c020eSBarry Smith @*/
5147d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5148d71ae5a4SJacob Faibussowitsch {
51498a9c020eSBarry Smith   PetscBool mpi;
51508a9c020eSBarry Smith 
51518a9c020eSBarry Smith   PetscFunctionBegin;
51528a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51538a9c020eSBarry Smith   if (mpi) {
51548a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51558a9c020eSBarry Smith   } else {
51568a9c020eSBarry Smith     *A_loc = A;
51578a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51588a9c020eSBarry Smith   }
51593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51608a9c020eSBarry Smith }
51618a9c020eSBarry Smith 
51628a9c020eSBarry Smith /*@
51632920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
516425616d81SHong Zhang 
516532fba14fSHong Zhang   Not Collective
516625616d81SHong Zhang 
516725616d81SHong Zhang   Input Parameters:
516825616d81SHong Zhang + A     - the matrix
516911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
517025616d81SHong Zhang 
517125616d81SHong Zhang   Output Parameter:
517225616d81SHong Zhang . A_loc - the local sequential matrix generated
517325616d81SHong Zhang 
517425616d81SHong Zhang   Level: developer
517525616d81SHong Zhang 
517677c65a98SStefano Zampini   Notes:
51772920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51782920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51792920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51802920cce0SJacob Faibussowitsch 
518111a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51828a9c020eSBarry Smith 
51832920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51842920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51852920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51862920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
518777c65a98SStefano Zampini 
51881cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
518925616d81SHong Zhang @*/
5190d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5191d71ae5a4SJacob Faibussowitsch {
519201b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5193b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5194b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5195ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5196ce496241SStefano Zampini   PetscScalar       *ca, *cam;
519777c65a98SStefano Zampini   PetscMPIInt        size;
5198d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
51995a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
52008661ff28SBarry Smith   PetscBool          match;
520125616d81SHong Zhang 
520225616d81SHong Zhang   PetscFunctionBegin;
52039566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
520428b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
52059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
520677c65a98SStefano Zampini   if (size == 1) {
520777c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52089566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
520977c65a98SStefano Zampini       *A_loc = mpimat->A;
521077c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52119566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
521277c65a98SStefano Zampini     }
52133ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
521477c65a98SStefano Zampini   }
521570a9ba44SHong Zhang 
52169566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5217b78526a6SJose E. Roman   a  = (Mat_SeqAIJ *)(mpimat->A)->data;
5218b78526a6SJose E. Roman   b  = (Mat_SeqAIJ *)(mpimat->B)->data;
52199371c9d4SSatish Balay   ai = a->i;
52209371c9d4SSatish Balay   aj = a->j;
52219371c9d4SSatish Balay   bi = b->i;
52229371c9d4SSatish Balay   bj = b->j;
52239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
52249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5225ce496241SStefano Zampini   aa = aav;
5226ce496241SStefano Zampini   ba = bav;
522701b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
52289566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5229dea91ad1SHong Zhang     ci[0] = 0;
5230ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
52319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
52329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5233dea91ad1SHong Zhang     k = 0;
523401b7ae99SHong Zhang     for (i = 0; i < am; i++) {
52355a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52365a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
523701b7ae99SHong Zhang       /* off-diagonal portion of A */
52385a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52395a7d977cSHong Zhang         col = cmap[*bj];
52405a7d977cSHong Zhang         if (col >= cstart) break;
52419371c9d4SSatish Balay         cj[k] = col;
52429371c9d4SSatish Balay         bj++;
52435a7d977cSHong Zhang         ca[k++] = *ba++;
52445a7d977cSHong Zhang       }
52455a7d977cSHong Zhang       /* diagonal portion of A */
52465a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
52475a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
52485a7d977cSHong Zhang         ca[k++] = *aa++;
52495a7d977cSHong Zhang       }
52505a7d977cSHong Zhang       /* off-diagonal portion of A */
52515a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52525a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52535a7d977cSHong Zhang         ca[k++] = *ba++;
52545a7d977cSHong Zhang       }
525525616d81SHong Zhang     }
5256dea91ad1SHong Zhang     /* put together the new matrix */
52579566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5258dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5259dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5260dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5261e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5262e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5263dea91ad1SHong Zhang     mat->nonew   = 0;
52645a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52655a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5266fff043a9SJunchao Zhang     ci  = mat->i;
5267fff043a9SJunchao Zhang     cj  = mat->j;
52689566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52695a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52705a7d977cSHong Zhang       /* off-diagonal portion of A */
52715a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52725a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52735a7d977cSHong Zhang         col = cmap[*bj];
52745a7d977cSHong Zhang         if (col >= cstart) break;
52759371c9d4SSatish Balay         *cam++ = *ba++;
52769371c9d4SSatish Balay         bj++;
52775a7d977cSHong Zhang       }
52785a7d977cSHong Zhang       /* diagonal portion of A */
5279ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5280a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52815a7d977cSHong Zhang       /* off-diagonal portion of A */
5282f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52839371c9d4SSatish Balay         *cam++ = *ba++;
52849371c9d4SSatish Balay         bj++;
5285f33d1a9aSHong Zhang       }
52865a7d977cSHong Zhang     }
52879566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
528898921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52899566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52909566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52919566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
529325616d81SHong Zhang }
529425616d81SHong Zhang 
5295ed502f03SStefano Zampini /*@
529611a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52974cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5298ed502f03SStefano Zampini 
5299ed502f03SStefano Zampini   Not Collective
5300ed502f03SStefano Zampini 
5301ed502f03SStefano Zampini   Input Parameters:
5302ed502f03SStefano Zampini + A     - the matrix
530311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5304ed502f03SStefano Zampini 
5305d8d19677SJose E. Roman   Output Parameters:
53062ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5307ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5308ed502f03SStefano Zampini 
5309ed502f03SStefano Zampini   Level: developer
5310ed502f03SStefano Zampini 
531111a5261eSBarry Smith   Note:
53122ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
53134cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5314ed502f03SStefano Zampini 
53151cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5316ed502f03SStefano Zampini @*/
5317d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5318d71ae5a4SJacob Faibussowitsch {
5319ed502f03SStefano Zampini   Mat             Ao, Ad;
5320ed502f03SStefano Zampini   const PetscInt *cmap;
5321ed502f03SStefano Zampini   PetscMPIInt     size;
5322ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5323ed502f03SStefano Zampini 
5324ed502f03SStefano Zampini   PetscFunctionBegin;
53259566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
53269566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5327ed502f03SStefano Zampini   if (size == 1) {
5328ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
53299566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5330ed502f03SStefano Zampini       *A_loc = Ad;
5331ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53329566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5333ed502f03SStefano Zampini     }
53349566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
53353ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5336ed502f03SStefano Zampini   }
53379566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
53389566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5339ed502f03SStefano Zampini   if (f) {
53409566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5341ed502f03SStefano Zampini   } else {
5342ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5343ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5344ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5345ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5346ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5347ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5348ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5349ed502f03SStefano Zampini     PetscScalar       *ca;
5350ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5351ed502f03SStefano Zampini 
53529566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53539566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53549566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53559566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5356ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5357ed502f03SStefano Zampini       PetscInt k;
53589566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53599566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53609566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5361ed502f03SStefano Zampini       ci[0] = 0;
5362ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5363ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5364ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5365ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5366ed502f03SStefano Zampini         /* diagonal portion of A */
5367ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5368ed502f03SStefano Zampini           cj[k] = *aj++;
5369ed502f03SStefano Zampini           ca[k] = *aa++;
5370ed502f03SStefano Zampini         }
5371ed502f03SStefano Zampini         /* off-diagonal portion of A */
5372ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5373ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5374ed502f03SStefano Zampini           ca[k] = *ba++;
5375ed502f03SStefano Zampini         }
5376ed502f03SStefano Zampini       }
5377ed502f03SStefano Zampini       /* put together the new matrix */
53789566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5379ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5380ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5381ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5382ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5383ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5384ed502f03SStefano Zampini       c->nonew   = 0;
53859566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5386ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53879566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5388ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5389ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5390ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5391ed502f03SStefano Zampini         /* diagonal portion of A */
5392ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5393ed502f03SStefano Zampini         /* off-diagonal portion of A */
5394ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5395ed502f03SStefano Zampini       }
53969566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
539798921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53989566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
53999566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5400ed502f03SStefano Zampini     if (glob) {
5401ed502f03SStefano Zampini       PetscInt cst, *gidx;
5402ed502f03SStefano Zampini 
54039566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
54049566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5405ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5406ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
54079566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5408ed502f03SStefano Zampini     }
5409ed502f03SStefano Zampini   }
54109566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
54113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5412ed502f03SStefano Zampini }
5413ed502f03SStefano Zampini 
541432fba14fSHong Zhang /*@C
541511a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
541632fba14fSHong Zhang 
541732fba14fSHong Zhang   Not Collective
541832fba14fSHong Zhang 
541932fba14fSHong Zhang   Input Parameters:
542032fba14fSHong Zhang + A     - the matrix
542111a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
542220f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
542320f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
542432fba14fSHong Zhang 
542532fba14fSHong Zhang   Output Parameter:
542632fba14fSHong Zhang . A_loc - the local sequential matrix generated
542732fba14fSHong Zhang 
542832fba14fSHong Zhang   Level: developer
542932fba14fSHong Zhang 
54301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
543132fba14fSHong Zhang @*/
5432d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5433d71ae5a4SJacob Faibussowitsch {
543432fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
543532fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
543632fba14fSHong Zhang   IS          isrowa, iscola;
543732fba14fSHong Zhang   Mat        *aloc;
54384a2b5492SBarry Smith   PetscBool   match;
543932fba14fSHong Zhang 
544032fba14fSHong Zhang   PetscFunctionBegin;
54419566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
544228b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
54439566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
544432fba14fSHong Zhang   if (!row) {
54459371c9d4SSatish Balay     start = A->rmap->rstart;
54469371c9d4SSatish Balay     end   = A->rmap->rend;
54479566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
544832fba14fSHong Zhang   } else {
544932fba14fSHong Zhang     isrowa = *row;
545032fba14fSHong Zhang   }
545132fba14fSHong Zhang   if (!col) {
5452d0f46423SBarry Smith     start = A->cmap->rstart;
545332fba14fSHong Zhang     cmap  = a->garray;
5454d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5455d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54569566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
545732fba14fSHong Zhang     ncols = 0;
545832fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
545932fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
546032fba14fSHong Zhang       else break;
546132fba14fSHong Zhang     }
546232fba14fSHong Zhang     imark = i;
546332fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
546432fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54659566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
546632fba14fSHong Zhang   } else {
546732fba14fSHong Zhang     iscola = *col;
546832fba14fSHong Zhang   }
546932fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54709566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
547132fba14fSHong Zhang     aloc[0] = *A_loc;
547232fba14fSHong Zhang   }
54739566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5474109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54759566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5476109e0772SStefano Zampini   }
547732fba14fSHong Zhang   *A_loc = aloc[0];
54789566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
547948a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
548048a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54819566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
548332fba14fSHong Zhang }
548432fba14fSHong Zhang 
54855c65b9ecSFande Kong /*
54865c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54875c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54885c65b9ecSFande Kong  * on a global size.
54895c65b9ecSFande Kong  * */
5490ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5491d71ae5a4SJacob Faibussowitsch {
54925c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
54935c65b9ecSFande Kong   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)(p->A)->data, *po = (Mat_SeqAIJ *)(p->B)->data, *p_oth;
5494131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5495131c27b5Sprj-   PetscMPIInt            owner;
54965c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54975c65b9ecSFande Kong   const PetscInt        *lrowindices;
54985c65b9ecSFande Kong   PetscSF                sf, osf;
54995c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
55005c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
55015c65b9ecSFande Kong   MPI_Comm               comm;
55025c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5503fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
55045c65b9ecSFande Kong 
55055c65b9ecSFande Kong   PetscFunctionBegin;
55069566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
55075c65b9ecSFande Kong   /* plocalsize is the number of roots
55085c65b9ecSFande Kong    * nrows is the number of leaves
55095c65b9ecSFande Kong    * */
55109566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
55119566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
55129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
55139566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
55145c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55155c65b9ecSFande Kong     /* Find a remote index and an owner for a row
55165c65b9ecSFande Kong      * The row could be local or remote
55175c65b9ecSFande Kong      * */
551834bcad68SFande Kong     owner = 0;
551934bcad68SFande Kong     lidx  = 0;
55209566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
55215c65b9ecSFande Kong     iremote[i].index = lidx;
55225c65b9ecSFande Kong     iremote[i].rank  = owner;
55235c65b9ecSFande Kong   }
55245c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
55259566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5526f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
55275c65b9ecSFande Kong    * offsets
55285c65b9ecSFande Kong    * */
55299566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55309566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55319566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5532bc8e477aSFande Kong 
55339566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
55349566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
55359566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
55365c65b9ecSFande Kong   roffsets[0] = 0;
55375c65b9ecSFande Kong   roffsets[1] = 0;
55385c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
55394cf0e950SBarry Smith     /* diagonal */
55405c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
55414cf0e950SBarry Smith     /* off-diagonal */
55425c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
55435c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
55445c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
55455c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
55465c65b9ecSFande Kong   }
55479566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
55489566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
55495c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
55509566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55519566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55529566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55539566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55549566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55559566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55569566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55575c65b9ecSFande Kong   dntotalcols = 0;
55585c65b9ecSFande Kong   ontotalcols = 0;
5559bc8e477aSFande Kong   ncol        = 0;
55605c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55615c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5562bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55634cf0e950SBarry Smith     /* diagonal */
55645c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55654cf0e950SBarry Smith     /* off-diagonal */
55665c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55675c65b9ecSFande Kong   }
55685c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55695c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55705c65b9ecSFande Kong    * */
55719566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55729566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55739566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55745c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55754cf0e950SBarry Smith   /* diagonal */
55769566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55774cf0e950SBarry Smith   /* off-diagonal */
55789566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55794cf0e950SBarry Smith   /* diagonal */
55809566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55814cf0e950SBarry Smith   /* off-diagonal */
55829566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55835c65b9ecSFande Kong   dntotalcols = 0;
55845c65b9ecSFande Kong   ontotalcols = 0;
55855c65b9ecSFande Kong   ntotalcols  = 0;
55865c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
558734bcad68SFande Kong     owner = 0;
55889566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55895c65b9ecSFande Kong     /* Set iremote for diag matrix */
55905c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55915c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55925c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55935c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55945c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55955c65b9ecSFande Kong     }
55964cf0e950SBarry Smith     /* off-diagonal */
55975c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
55985c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
55995c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
56005c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
56015c65b9ecSFande Kong     }
56025c65b9ecSFande Kong   }
56039566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
56049566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
56059566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
56069566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
56075c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
56085c65b9ecSFande Kong    * Diag matrix
56095c65b9ecSFande Kong    * */
56109566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
56119566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
56129566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
56135c65b9ecSFande Kong 
56149566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
56154cf0e950SBarry Smith   /* off-diagonal */
56169566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
56179566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
56189566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
56199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56209566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56214cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
56229566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56239566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56249566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
56255c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
56265c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
56279566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56285c65b9ecSFande Kong   /* We want P_oth store global indices */
56299566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
56305c65b9ecSFande Kong   /* Use memory scalable approach */
56319566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
56329566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
56339566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56349566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56355c65b9ecSFande Kong   /* Convert back to local indices */
56365c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
56379566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56385c65b9ecSFande Kong   nout = 0;
56399566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
564008401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
56419566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
56425c65b9ecSFande Kong   /* Exchange values */
56439566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56449566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56469566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56475c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
56485c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
56499566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
56509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56515c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56529566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56539566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56549566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56559566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56575c65b9ecSFande Kong }
56585c65b9ecSFande Kong 
56595c65b9ecSFande Kong /*
56605c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56615c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56625c65b9ecSFande Kong  * */
5663d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5664d71ae5a4SJacob Faibussowitsch {
56655c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5666bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5667bc8e477aSFande Kong   IS          rows, map;
5668bc8e477aSFande Kong   PetscHMapI  hamp;
5669bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56705c65b9ecSFande Kong   MPI_Comm    comm;
56715c65b9ecSFande Kong   PetscSF     sf, osf;
5672bc8e477aSFande Kong   PetscBool   has;
56735c65b9ecSFande Kong 
56745c65b9ecSFande Kong   PetscFunctionBegin;
56759566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56769566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56775c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56785c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56795c65b9ecSFande Kong    * */
56805c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56815c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5682eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56839566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5684bc8e477aSFande Kong     count = 0;
5685bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5686bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5687bc8e477aSFande Kong       key = a->garray[i] / dof;
56889566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5689bc8e477aSFande Kong       if (!has) {
5690bc8e477aSFande Kong         mapping[i] = count;
56919566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5692bc8e477aSFande Kong       } else {
5693bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5694bc8e477aSFande Kong         mapping[i] = count - 1;
56955c65b9ecSFande Kong       }
5696bc8e477aSFande Kong     }
56979566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
56989566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5699eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
57009566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
57015c65b9ecSFande Kong     off = 0;
57029566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
57039566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
57049566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
57059566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
57065c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
57079566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
57089566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
57099566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
57109566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
57119566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
57125c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
57135c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
571435cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5715fff043a9SJunchao Zhang      */
5716fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5717fff043a9SJunchao Zhang 
57189566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
57199566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
572008401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
57215c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
57225c65b9ecSFande Kong     /* Update values in place */
57239566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
57249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
57259566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57269566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57279566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57289566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57299566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
57309566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
57316718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
57329566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
57333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57345c65b9ecSFande Kong }
57355c65b9ecSFande Kong 
573625616d81SHong Zhang /*@C
573720f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
573825616d81SHong Zhang 
5739c3339decSBarry Smith   Collective
574025616d81SHong Zhang 
574125616d81SHong Zhang   Input Parameters:
574211a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
574311a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
574411a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
574525616d81SHong Zhang 
5746f1a722f8SMatthew G. Knepley   Output Parameters:
574727430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
574827430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5749f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
575025616d81SHong Zhang 
575125616d81SHong Zhang   Level: developer
575225616d81SHong Zhang 
575320f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
575425616d81SHong Zhang @*/
5755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5756d71ae5a4SJacob Faibussowitsch {
5757899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5758b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
575925616d81SHong Zhang   IS          isrowb, iscolb;
57600298fd71SBarry Smith   Mat        *bseq = NULL;
576125616d81SHong Zhang 
576225616d81SHong Zhang   PetscFunctionBegin;
576320f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
576420f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57659566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
576625616d81SHong Zhang 
576725616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5768d0f46423SBarry Smith     start = A->cmap->rstart;
576925616d81SHong Zhang     cmap  = a->garray;
5770d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5771d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57729566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
577325616d81SHong Zhang     ncols = 0;
57740390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
577525616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
577625616d81SHong Zhang       else break;
577725616d81SHong Zhang     }
577825616d81SHong Zhang     imark = i;
57790390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57800390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57819566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57829566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
578325616d81SHong Zhang   } else {
578408401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57859371c9d4SSatish Balay     isrowb = *rowb;
57869371c9d4SSatish Balay     iscolb = *colb;
57879566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
578825616d81SHong Zhang     bseq[0] = *B_seq;
578925616d81SHong Zhang   }
57909566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
579125616d81SHong Zhang   *B_seq = bseq[0];
57929566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
579325616d81SHong Zhang   if (!rowb) {
57949566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
579525616d81SHong Zhang   } else {
579625616d81SHong Zhang     *rowb = isrowb;
579725616d81SHong Zhang   }
579825616d81SHong Zhang   if (!colb) {
57999566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
580025616d81SHong Zhang   } else {
580125616d81SHong Zhang     *colb = iscolb;
580225616d81SHong Zhang   }
58039566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
58043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
580525616d81SHong Zhang }
5806429d309bSHong Zhang 
5807f8487c73SHong Zhang /*
580827430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
580901b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5810429d309bSHong Zhang 
5811c3339decSBarry Smith     Collective
5812429d309bSHong Zhang 
5813429d309bSHong Zhang    Input Parameters:
581427430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
581527430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5816429d309bSHong Zhang 
5817429d309bSHong Zhang    Output Parameter:
58180298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
58190298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
58200298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5821598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5822429d309bSHong Zhang 
582311a5261eSBarry Smith     Developer Note:
582411a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
58256eb45d04SBarry Smith      for this matrix. This is not desirable..
58266eb45d04SBarry Smith 
5827429d309bSHong Zhang     Level: developer
5828429d309bSHong Zhang 
5829f8487c73SHong Zhang */
5830d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5831d71ae5a4SJacob Faibussowitsch {
5832899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
583387025532SHong Zhang   Mat_SeqAIJ        *b_oth;
58344b8d542aSHong Zhang   VecScatter         ctx;
5835ce94432eSBarry Smith   MPI_Comm           comm;
58363515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
58373515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5838277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
5839f4259b30SLisandro Dalcin   PetscInt           i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len;
5840277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5841ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5842ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5843429d309bSHong Zhang 
5844429d309bSHong Zhang   PetscFunctionBegin;
58459566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
58469566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5847a7c7454dSHong Zhang 
584820f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
584920f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58509566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58519566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5852a6b2eed2SHong Zhang 
5853ec07b8f8SHong Zhang   if (size == 1) {
5854ec07b8f8SHong Zhang     startsj_s = NULL;
5855ec07b8f8SHong Zhang     bufa_ptr  = NULL;
585652f7967eSHong Zhang     *B_oth    = NULL;
58573ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5858ec07b8f8SHong Zhang   }
5859ec07b8f8SHong Zhang 
5860fa83eaafSHong Zhang   ctx = a->Mvctx;
58614b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58624b8d542aSHong Zhang 
58639566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58643515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58659566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58669566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5868ddea5d60SJunchao Zhang   rwaits = reqs;
58698e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5870429d309bSHong Zhang 
5871b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5872429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5873a6b2eed2SHong Zhang     /* i-array */
5874a6b2eed2SHong Zhang     /*  post receives */
58759566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5876a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
587774268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5878e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58799566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5880429d309bSHong Zhang     }
5881a6b2eed2SHong Zhang 
5882a6b2eed2SHong Zhang     /* pack the outgoing message */
58839566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58842205254eSKarl Rupp 
58852205254eSKarl Rupp     sstartsj[0] = 0;
58862205254eSKarl Rupp     rstartsj[0] = 0;
5887a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58883515ee7fSJunchao Zhang     if (nsends) {
58893515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58909566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58913515ee7fSJunchao Zhang     }
5892a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58933515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5894e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
589587025532SHong Zhang       for (j = 0; j < nrows; j++) {
5896d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5897e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
58989566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
58992205254eSKarl Rupp 
5900e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
59012205254eSKarl Rupp 
5902e42f35eeSHong Zhang           len += ncols;
59039566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5904e42f35eeSHong Zhang         }
5905a6b2eed2SHong Zhang         k++;
5906429d309bSHong Zhang       }
59079566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
59082205254eSKarl Rupp 
5909dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5910429d309bSHong Zhang     }
591187025532SHong Zhang     /* recvs and sends of i-array are completed */
59129566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59139566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5914e42f35eeSHong Zhang 
5915a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
59169566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
59179566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5918a6b2eed2SHong Zhang 
591987025532SHong Zhang     /* create i-array of B_oth */
59209566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
59212205254eSKarl Rupp 
592287025532SHong Zhang     b_othi[0] = 0;
5923a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5924a6b2eed2SHong Zhang     k         = 0;
5925a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
59263515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
59273515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
592887025532SHong Zhang       for (j = 0; j < nrows; j++) {
592987025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
59309566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5931f91af8c7SBarry Smith         k++;
5932a6b2eed2SHong Zhang       }
5933dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5934a6b2eed2SHong Zhang     }
59359566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5936a6b2eed2SHong Zhang 
59376aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
59389566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
59399566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5940a6b2eed2SHong Zhang 
594187025532SHong Zhang     /* j-array */
5942a6b2eed2SHong Zhang     /*  post receives of j-array */
5943a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
594487025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59459566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5946a6b2eed2SHong Zhang     }
5947e42f35eeSHong Zhang 
5948e42f35eeSHong Zhang     /* pack the outgoing message j-array */
59493515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5950a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5951e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5952a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
595387025532SHong Zhang       for (j = 0; j < nrows; j++) {
5954d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5955e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59569566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5957ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59589566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5959e42f35eeSHong Zhang         }
596087025532SHong Zhang       }
59619566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
596287025532SHong Zhang     }
596387025532SHong Zhang 
596487025532SHong Zhang     /* recvs and sends of j-array are completed */
59659566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
596687025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5967b7f45c76SHong Zhang     sstartsj = *startsj_s;
59681d79065fSBarry Smith     rstartsj = *startsj_r;
596987025532SHong Zhang     bufa     = *bufa_ptr;
597087025532SHong Zhang     b_oth    = (Mat_SeqAIJ *)(*B_oth)->data;
59719566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5972ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
597387025532SHong Zhang 
597487025532SHong Zhang   /* a-array */
597587025532SHong Zhang   /*  post receives of a-array */
597687025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
597787025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59789566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
597987025532SHong Zhang   }
5980e42f35eeSHong Zhang 
5981e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59823515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
598387025532SHong Zhang   for (i = 0; i < nsends; i++) {
5984e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
598587025532SHong Zhang     bufA  = bufa + sstartsj[i];
598687025532SHong Zhang     for (j = 0; j < nrows; j++) {
5987d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5988e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59899566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5990ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59919566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5992e42f35eeSHong Zhang       }
5993a6b2eed2SHong Zhang     }
59949566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5995a6b2eed2SHong Zhang   }
599687025532SHong Zhang   /* recvs and sends of a-array are completed */
59979566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59989566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
5999a6b2eed2SHong Zhang 
600087025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
6001a6b2eed2SHong Zhang     /* put together the new matrix */
60029566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
6003a6b2eed2SHong Zhang 
6004a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
6005a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
600687025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
6007e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
6008e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
600987025532SHong Zhang     b_oth->nonew   = 0;
6010a6b2eed2SHong Zhang 
60119566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
6012b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
60139566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
60149566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
6015dea91ad1SHong Zhang     } else {
6016b7f45c76SHong Zhang       *startsj_s = sstartsj;
60171d79065fSBarry Smith       *startsj_r = rstartsj;
601887025532SHong Zhang       *bufa_ptr  = bufa;
601987025532SHong Zhang     }
6020fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
60219566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
6022dea91ad1SHong Zhang   }
60233515ee7fSJunchao Zhang 
60249566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
60259566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
60269566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
60273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6028429d309bSHong Zhang }
6029ccd8e176SBarry Smith 
6030cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
6031cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
6032ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
60339779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
6034a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
6035191b95cbSRichard Tran Mills #endif
6036ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
6037cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
60385d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6039cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
60405d7652ecSHong Zhang #endif
6041d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
6042d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
6043d24d4204SJose E. Roman #endif
604463c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
604563c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
604663c07aadSStefano Zampini #endif
60473338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
60483338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60493338378cSStefano Zampini #endif
6050d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6051d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6052d5e393b6SSuyash Tandon #endif
60533d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60543d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60553d0639e7SStefano Zampini #endif
6056d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60574222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60584222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
605917667f90SBarry Smith 
6060fc4dec0aSBarry Smith /*
6061fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6062fc4dec0aSBarry Smith 
6063fc4dec0aSBarry Smith                n                       p                          p
60642da392ccSBarry Smith         [             ]       [             ]         [                 ]
60652da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60662da392ccSBarry Smith         [             ]       [             ]         [                 ]
6067fc4dec0aSBarry Smith 
6068fc4dec0aSBarry Smith */
6069d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6070d71ae5a4SJacob Faibussowitsch {
6071fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6072fc4dec0aSBarry Smith 
6073fc4dec0aSBarry Smith   PetscFunctionBegin;
60749566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60759566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
60769566063dSJacob Faibussowitsch   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct));
60779566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60789566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60797fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60809566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60819566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6083fc4dec0aSBarry Smith }
6084fc4dec0aSBarry Smith 
6085d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6086d71ae5a4SJacob Faibussowitsch {
60876718818eSStefano Zampini   PetscBool cisdense;
6088fc4dec0aSBarry Smith 
6089fc4dec0aSBarry Smith   PetscFunctionBegin;
609008401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60919566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60929566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6093d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
609448a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60959566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6096f75ecaa4SHong Zhang 
60974222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
60983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6099fc4dec0aSBarry Smith }
6100fc4dec0aSBarry Smith 
6101d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6102d71ae5a4SJacob Faibussowitsch {
61034222ddf1SHong Zhang   Mat_Product *product = C->product;
61044222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6105fc4dec0aSBarry Smith 
6106fc4dec0aSBarry Smith   PetscFunctionBegin;
610720f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
610820f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
61094222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
61104222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
61113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6112fc4dec0aSBarry Smith }
6113fc4dec0aSBarry Smith 
6114d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6115d71ae5a4SJacob Faibussowitsch {
61164222ddf1SHong Zhang   Mat_Product *product = C->product;
61174222ddf1SHong Zhang 
61184222ddf1SHong Zhang   PetscFunctionBegin;
611948a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
61203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61214222ddf1SHong Zhang }
6122394ed5ebSJunchao Zhang 
612327430b45SBarry Smith /*
612427430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6125394ed5ebSJunchao Zhang 
6126394ed5ebSJunchao Zhang   Input Parameters:
6127394ed5ebSJunchao Zhang 
6128651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6129651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6130394ed5ebSJunchao Zhang 
6131158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6132394ed5ebSJunchao Zhang 
6133394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6134394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6135394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6136394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6137394ed5ebSJunchao Zhang 
6138394ed5ebSJunchao Zhang     Similar for Set2.
6139394ed5ebSJunchao Zhang 
6140394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6141394ed5ebSJunchao Zhang 
6142158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6143394ed5ebSJunchao Zhang 
6144394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6145394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6146394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6147394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6148394ed5ebSJunchao Zhang */
6149d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6150d71ae5a4SJacob Faibussowitsch {
6151394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6152394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6153394ed5ebSJunchao Zhang 
6154394ed5ebSJunchao Zhang   PetscFunctionBegin;
61559566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6156394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6157394ed5ebSJunchao Zhang   i[0]        = 0;
6158394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6159394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6160394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6161394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6162394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6163394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6164394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6165394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6166394ed5ebSJunchao Zhang         imap1[t1] = t;
6167394ed5ebSJunchao Zhang         imap2[t2] = t;
6168394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6169394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61709371c9d4SSatish Balay         t1++;
61719371c9d4SSatish Balay         t2++;
61729371c9d4SSatish Balay         t++;
6173394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6174394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6175394ed5ebSJunchao Zhang         imap1[t1] = t;
6176394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61779371c9d4SSatish Balay         t1++;
61789371c9d4SSatish Balay         t++;
6179394ed5ebSJunchao Zhang       } else {
6180394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6181394ed5ebSJunchao Zhang         imap2[t2] = t;
6182394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61839371c9d4SSatish Balay         t2++;
61849371c9d4SSatish Balay         t++;
6185394ed5ebSJunchao Zhang       }
6186394ed5ebSJunchao Zhang     }
6187394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6188394ed5ebSJunchao Zhang     while (b1 < e1) {
6189394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6190394ed5ebSJunchao Zhang       imap1[t1] = t;
6191394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61929371c9d4SSatish Balay       t1++;
61939371c9d4SSatish Balay       t++;
6194394ed5ebSJunchao Zhang     }
6195394ed5ebSJunchao Zhang     while (b2 < e2) {
6196394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6197394ed5ebSJunchao Zhang       imap2[t2] = t;
6198394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
61999371c9d4SSatish Balay       t2++;
62009371c9d4SSatish Balay       t++;
6201394ed5ebSJunchao Zhang     }
6202394ed5ebSJunchao Zhang     i[r + 1] = t;
6203394ed5ebSJunchao Zhang   }
62043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6205394ed5ebSJunchao Zhang }
6206394ed5ebSJunchao Zhang 
620727430b45SBarry Smith /*
620827430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6209394ed5ebSJunchao Zhang 
6210394ed5ebSJunchao Zhang   Input Parameters:
6211394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6212394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6213394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6214394ed5ebSJunchao Zhang 
6215394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6216394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6217394ed5ebSJunchao Zhang 
6218394ed5ebSJunchao Zhang   Output Parameters:
6219394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6220394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6221394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6222394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6223394ed5ebSJunchao Zhang 
6224394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6225158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6226158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6227394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6228394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6229394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6230394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6231394ed5ebSJunchao Zhang 
6232394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6233394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6234394ed5ebSJunchao Zhang 
6235394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6236394ed5ebSJunchao Zhang 
6237158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6238394ed5ebSJunchao Zhang */
6239d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6240d71ae5a4SJacob Faibussowitsch {
6241394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6242394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6243394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6244394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6245394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6246394ed5ebSJunchao Zhang 
6247394ed5ebSJunchao Zhang   PetscFunctionBegin;
62489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62499566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6250394ed5ebSJunchao Zhang   m = rend - rstart;
6251394ed5ebSJunchao Zhang 
6252651b1cf9SStefano Zampini   /* Skip negative rows */
6253651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62549371c9d4SSatish Balay     if (i[k] >= 0) break;
6255394ed5ebSJunchao Zhang 
6256394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6257394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6258394ed5ebSJunchao Zhang   */
6259394ed5ebSJunchao Zhang   while (k < n) {
6260394ed5ebSJunchao Zhang     row = i[k];
6261394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62629371c9d4SSatish Balay     for (s = k; s < n; s++)
62639371c9d4SSatish Balay       if (i[s] != row) break;
6264651b1cf9SStefano Zampini 
6265651b1cf9SStefano Zampini     /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */
6266394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
6267651b1cf9SStefano Zampini       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT;
626854c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6269394ed5ebSJunchao Zhang     }
62709566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6271158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6272394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6273394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6274394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6275394ed5ebSJunchao Zhang 
6276394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6277394ed5ebSJunchao Zhang     Atot += mid - k;
6278394ed5ebSJunchao Zhang     Btot += s - mid;
6279394ed5ebSJunchao Zhang 
6280651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6281394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6282394ed5ebSJunchao Zhang       col = j[p];
62839371c9d4SSatish Balay       do {
6284651b1cf9SStefano Zampini         j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */
62859371c9d4SSatish Balay         p++;
6286651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6287394ed5ebSJunchao Zhang       Annz++;
6288394ed5ebSJunchao Zhang     }
6289394ed5ebSJunchao Zhang 
6290651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6291394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6292394ed5ebSJunchao Zhang       col = j[p];
6293d71ae5a4SJacob Faibussowitsch       do {
6294d71ae5a4SJacob Faibussowitsch         p++;
6295d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6296394ed5ebSJunchao Zhang       Bnnz++;
6297394ed5ebSJunchao Zhang     }
6298394ed5ebSJunchao Zhang     k = s;
6299394ed5ebSJunchao Zhang   }
6300394ed5ebSJunchao Zhang 
6301394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6302158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6303158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6304158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6305158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6306394ed5ebSJunchao Zhang 
63076aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6308394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6309394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6310394ed5ebSJunchao Zhang     k   = rowBegin[r];
6311394ed5ebSJunchao Zhang     mid = rowMid[r];
6312394ed5ebSJunchao Zhang     s   = rowEnd[r];
63138e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
63148e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6315394ed5ebSJunchao Zhang     Atot += mid - k;
6316394ed5ebSJunchao Zhang     Btot += s - mid;
6317394ed5ebSJunchao Zhang 
6318394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6319394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6320394ed5ebSJunchao Zhang       col = j[p];
6321394ed5ebSJunchao Zhang       q   = p;
6322d71ae5a4SJacob Faibussowitsch       do {
6323d71ae5a4SJacob Faibussowitsch         p++;
6324d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6325394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6326394ed5ebSJunchao Zhang       Annz++;
6327394ed5ebSJunchao Zhang     }
6328394ed5ebSJunchao Zhang 
6329394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6330394ed5ebSJunchao Zhang       col = j[p];
6331394ed5ebSJunchao Zhang       q   = p;
6332d71ae5a4SJacob Faibussowitsch       do {
6333d71ae5a4SJacob Faibussowitsch         p++;
6334d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6335394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6336394ed5ebSJunchao Zhang       Bnnz++;
6337394ed5ebSJunchao Zhang     }
6338394ed5ebSJunchao Zhang   }
6339394ed5ebSJunchao Zhang   /* Output */
6340394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6341394ed5ebSJunchao Zhang   *Annz_  = Annz;
6342394ed5ebSJunchao Zhang   *Atot_  = Atot;
6343394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6344394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6345394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6346394ed5ebSJunchao Zhang   *Btot_  = Btot;
6347394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
63483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6349394ed5ebSJunchao Zhang }
6350394ed5ebSJunchao Zhang 
635127430b45SBarry Smith /*
635227430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6353158ec288SJunchao Zhang 
6354158ec288SJunchao Zhang   Input Parameters:
6355158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6356158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6357158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6358651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6359158ec288SJunchao Zhang 
6360158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6361158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6362158ec288SJunchao Zhang 
6363158ec288SJunchao Zhang   Example:
6364158ec288SJunchao Zhang     nnz1 = 4
6365158ec288SJunchao Zhang     nnz  = 6
6366158ec288SJunchao Zhang     imap = [1,3,4,5]
6367158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6368158ec288SJunchao Zhang    then,
6369158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6370158ec288SJunchao Zhang */
6371d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6372d71ae5a4SJacob Faibussowitsch {
6373158ec288SJunchao Zhang   PetscCount k, p;
6374158ec288SJunchao Zhang 
6375158ec288SJunchao Zhang   PetscFunctionBegin;
6376158ec288SJunchao Zhang   jmap_new[0] = 0;
6377158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6378158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6379158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6380158ec288SJunchao Zhang   }
6381158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6383158ec288SJunchao Zhang }
6384158ec288SJunchao Zhang 
63852c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data)
63862c4ab24aSJunchao Zhang {
63872c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data;
63882c4ab24aSJunchao Zhang 
63892c4ab24aSJunchao Zhang   PetscFunctionBegin;
63902c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63912c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63922c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63932c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63942c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63952c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
63962c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
63972c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
63982c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
63992c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
64002c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
64012c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
64022c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
64032c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
64042c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
64052c4ab24aSJunchao Zhang }
64062c4ab24aSJunchao Zhang 
6407d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6408d71ae5a4SJacob Faibussowitsch {
6409394ed5ebSJunchao Zhang   MPI_Comm             comm;
6410394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6411394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6412394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6413394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
64142c4ab24aSJunchao Zhang   PetscContainer       container;
64152c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6416394ed5ebSJunchao Zhang 
6417394ed5ebSJunchao Zhang   PetscFunctionBegin;
64189566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
64199566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6420cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6421eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6422cbc6b225SStefano Zampini #else
64239566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6424cbc6b225SStefano Zampini #endif
64259566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6426cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6427cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6428cbc6b225SStefano Zampini 
64299566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
64309566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
64319566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
64329566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
64339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
64349566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
64359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
64369566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
64379566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6438394ed5ebSJunchao Zhang 
64396aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6440394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6441394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6442e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6443e8729f6fSJunchao Zhang 
6444e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6445394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6446394ed5ebSJunchao Zhang 
6447394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6448394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6449394ed5ebSJunchao Zhang      will have positive row indices.
6450394ed5ebSJunchao Zhang   */
6451394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
6452394ed5ebSJunchao Zhang     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT;                /* e.g., -2^31, minimal to move them ahead */
6453394ed5ebSJunchao Zhang     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */
6454f7d195e4SLawrence Mitchell     else {
6455f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
6456f7d195e4SLawrence Mitchell       if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */
6457f7d195e4SLawrence Mitchell     }
6458394ed5ebSJunchao Zhang   }
6459394ed5ebSJunchao Zhang 
6460da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64619566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6462651b1cf9SStefano Zampini 
6463651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6464651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64659371c9d4SSatish Balay     if (i1[k] > PETSC_MIN_INT) break;
6466651b1cf9SStefano Zampini   PetscInt i1start = k;
6467651b1cf9SStefano Zampini 
64689566063dSJacob Faibussowitsch   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */
6469394ed5ebSJunchao Zhang   for (; k < rem; k++) i1[k] += PETSC_MAX_INT;                                    /* Revert row indices of local rows*/
6470394ed5ebSJunchao Zhang 
6471394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6472394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6473394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6474394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6475394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6476394ed5ebSJunchao Zhang   const PetscInt *ranges;
6477394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6478394ed5ebSJunchao Zhang 
64799566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6481394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6482394ed5ebSJunchao Zhang     PetscMPIInt owner;
6483394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6484cbc6b225SStefano Zampini 
6485394ed5ebSJunchao Zhang     /* Locate a row range */
6486394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64879566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6488394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6489394ed5ebSJunchao Zhang 
6490394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
64919566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6492394ed5ebSJunchao Zhang 
6493394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6494394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6495394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6496394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6497394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6498cbc6b225SStefano Zampini 
64999566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
65009566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
65019566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
65029566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6503394ed5ebSJunchao Zhang       sendto   = sendto2;
6504394ed5ebSJunchao Zhang       nentries = nentries2;
6505394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6506394ed5ebSJunchao Zhang     }
6507394ed5ebSJunchao Zhang     sendto[nsend]   = owner;
6508394ed5ebSJunchao Zhang     nentries[nsend] = p - k;
65099566063dSJacob Faibussowitsch     PetscCall(PetscCountCast(p - k, &nentries[nsend]));
6510394ed5ebSJunchao Zhang     nsend++;
6511394ed5ebSJunchao Zhang     k = p;
6512394ed5ebSJunchao Zhang   }
6513394ed5ebSJunchao Zhang 
6514394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6515394ed5ebSJunchao Zhang   PetscSF      sf1;
6516394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6517394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6518394ed5ebSJunchao Zhang   PetscInt    *offsets;
6519394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6520394ed5ebSJunchao Zhang 
65219566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
65229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
65239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6524394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6525394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6526394ed5ebSJunchao Zhang     iremote[k].index = 0;
6527394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
652854c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6529394ed5ebSJunchao Zhang   }
65309566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
65319566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
65329566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
65339566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
653463a3b9bcSJacob Faibussowitsch   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT "", nleaves2, n1 - rem);
6535394ed5ebSJunchao Zhang 
6536394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6537394ed5ebSJunchao Zhang   PetscSF sf2;
6538394ed5ebSJunchao Zhang   nroots  = nroots2;
6539394ed5ebSJunchao Zhang   nleaves = nleaves2;
65409566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
65419566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
65429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6543394ed5ebSJunchao Zhang   p = 0;
6544394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
654554c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6546394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6547394ed5ebSJunchao Zhang       iremote[p].rank  = sendto[k];
6548394ed5ebSJunchao Zhang       iremote[p].index = offsets[k] + q;
6549394ed5ebSJunchao Zhang     }
6550394ed5ebSJunchao Zhang   }
65519566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6552394ed5ebSJunchao Zhang 
6553394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6554394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6555394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
65579566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1 + rem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
65589566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1 + rem, i2, MPI_REPLACE));
65599566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1 + rem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
65609566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1 + rem, j2, MPI_REPLACE));
6561394ed5ebSJunchao Zhang 
65629566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65639566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6564394ed5ebSJunchao Zhang 
6565394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6566394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65679566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6568394ed5ebSJunchao Zhang 
6569651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6570651b1cf9SStefano Zampini   PetscCount *Cperm1;
6571651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6572651b1cf9SStefano Zampini   PetscCall(PetscArraycpy(Cperm1, perm1 + rem, nleaves));
6573651b1cf9SStefano Zampini 
6574651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6575651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6576651b1cf9SStefano Zampini   PetscBool   hypre;
6577651b1cf9SStefano Zampini   const char *name;
6578651b1cf9SStefano Zampini   PetscCall(PetscObjectGetName((PetscObject)mat, &name));
6579651b1cf9SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre));
6580651b1cf9SStefano Zampini   if (hypre) {
6581651b1cf9SStefano Zampini     PetscInt *minj;
6582651b1cf9SStefano Zampini     PetscBT   hasdiag;
6583651b1cf9SStefano Zampini 
6584651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6585651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
6586651b1cf9SStefano Zampini     for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT;
6587651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6588651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6589651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6590651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6591651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6592651b1cf9SStefano Zampini     }
6593651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6594651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6595651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6596651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6597651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6598651b1cf9SStefano Zampini     }
6599651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6600651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6601651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6602651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6603651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6604651b1cf9SStefano Zampini     }
6605651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6606651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6607651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6608651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6609651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6610651b1cf9SStefano Zampini     }
6611651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6612651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6613651b1cf9SStefano Zampini   }
6614651b1cf9SStefano Zampini 
6615651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6616651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6617651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6618651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6619394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6620394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6621394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6622394ed5ebSJunchao Zhang 
6623651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
66249566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6625651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
66269566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6627394ed5ebSJunchao Zhang 
6628394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6629394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6630394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6631394ed5ebSJunchao Zhang 
66329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
66339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
66349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
66359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6636394ed5ebSJunchao Zhang 
6637394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6638158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6639158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6640158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6641158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6642394ed5ebSJunchao Zhang 
66439566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66449566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6645158ec288SJunchao Zhang 
6646158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6647158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6648158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6649158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6650158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6651158ec288SJunchao Zhang 
6652158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6653158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6654158ec288SJunchao Zhang 
6655158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6656158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6657158ec288SJunchao Zhang 
6658158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6659158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6660158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6661158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66629566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66639566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6664e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66659566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6666394ed5ebSJunchao Zhang 
6667158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6668158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6669158ec288SJunchao Zhang 
6670394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6671394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6672394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66739566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66749566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66759566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6676394ed5ebSJunchao Zhang     Aj = Aj_new;
6677394ed5ebSJunchao Zhang   }
6678394ed5ebSJunchao Zhang 
6679394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6680394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66819566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66829566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66839566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6684394ed5ebSJunchao Zhang     Bj = Bj_new;
6685394ed5ebSJunchao Zhang   }
6686394ed5ebSJunchao Zhang 
6687cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6688394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6689cbc6b225SStefano Zampini   MatType          rtype;
6690394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6691cf8ba265SJunchao Zhang   PetscObjectState state;
66929566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
66939566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6694394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
66959371c9d4SSatish Balay   if (cstart) {
66969371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
66979371c9d4SSatish Balay   }
66989566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mpiaij->A));
66999566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mpiaij->B));
67009566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
67019566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
67029566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
67039566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
67045bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6705cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6706cf8ba265SJunchao Zhang   PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6707cbc6b225SStefano Zampini 
6708394ed5ebSJunchao Zhang   a               = (Mat_SeqAIJ *)mpiaij->A->data;
6709394ed5ebSJunchao Zhang   b               = (Mat_SeqAIJ *)mpiaij->B->data;
6710394ed5ebSJunchao Zhang   a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */
6711394ed5ebSJunchao Zhang   a->free_a = b->free_a = PETSC_TRUE;
6712394ed5ebSJunchao Zhang   a->free_ij = b->free_ij = PETSC_TRUE;
6713394ed5ebSJunchao Zhang 
6714cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
67159566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
67169566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
67179566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
67189566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6719cbc6b225SStefano Zampini 
67202c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
67212c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
67222c4ab24aSJunchao Zhang   coo->n       = coo_n;
67232c4ab24aSJunchao Zhang   coo->sf      = sf2;
67242c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
67252c4ab24aSJunchao Zhang   coo->recvlen = nroots;
67262c4ab24aSJunchao Zhang   coo->Annz    = Annz;
67272c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
67282c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
67292c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
67302c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67312c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67322c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67332c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67342c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67352c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67362c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67372c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67382c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67392c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67402c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67412c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67422c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67432c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67442c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67452c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67462c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67472c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67482c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
67492c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ));
67502c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67512c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6753394ed5ebSJunchao Zhang }
6754394ed5ebSJunchao Zhang 
6755d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6756d71ae5a4SJacob Faibussowitsch {
6757394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6758394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6759394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67602c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67612c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67622c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67632c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67642c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67652c4ab24aSJunchao Zhang   PetscContainer       container;
67662c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6767394ed5ebSJunchao Zhang 
6768394ed5ebSJunchao Zhang   PetscFunctionBegin;
67692c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67702c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67712c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67722c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67732c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67742c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67752c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67762c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67772c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67782c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67792c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
67802c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
67812c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
67822c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
67832c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
67842c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
67852c4ab24aSJunchao Zhang 
67869566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
67879566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6788394ed5ebSJunchao Zhang 
6789394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
67902c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6791394ed5ebSJunchao Zhang 
6792394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
67932c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6794394ed5ebSJunchao Zhang   /* Add local entries to A and B */
67952c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6796da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6797158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6798158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6799394ed5ebSJunchao Zhang   }
68002c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6801158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6802158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6803158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6804394ed5ebSJunchao Zhang   }
68052c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6806394ed5ebSJunchao Zhang 
6807394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
68082c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6809394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6810394ed5ebSJunchao Zhang   }
68112c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6812394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6813394ed5ebSJunchao Zhang   }
68149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
68159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
68163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6817394ed5ebSJunchao Zhang }
6818394ed5ebSJunchao Zhang 
6819ccd8e176SBarry Smith /*MC
6820ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6821ccd8e176SBarry Smith 
6822ccd8e176SBarry Smith    Options Database Keys:
682311a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6824ccd8e176SBarry Smith 
6825ccd8e176SBarry Smith    Level: beginner
68260cd7f59aSBarry Smith 
68270cd7f59aSBarry Smith    Notes:
68282ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
68290cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
68300cd7f59aSBarry Smith     in the matrix
68310cd7f59aSBarry Smith 
683211a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
683311a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6834ccd8e176SBarry Smith 
68351cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6836ccd8e176SBarry Smith M*/
6837d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6838d71ae5a4SJacob Faibussowitsch {
6839ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6840ccd8e176SBarry Smith   PetscMPIInt size;
6841ccd8e176SBarry Smith 
6842ccd8e176SBarry Smith   PetscFunctionBegin;
68439566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68442205254eSKarl Rupp 
68454dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6846ccd8e176SBarry Smith   B->data       = (void *)b;
6847aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6848ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6849ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6850ccd8e176SBarry Smith   b->size       = size;
68512205254eSKarl Rupp 
68529566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6853ccd8e176SBarry Smith 
6854ccd8e176SBarry Smith   /* build cache for off array entries formed */
68559566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68562205254eSKarl Rupp 
6857ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6858f4259b30SLisandro Dalcin   b->colmap      = NULL;
6859f4259b30SLisandro Dalcin   b->garray      = NULL;
6860ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6861ccd8e176SBarry Smith 
6862ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68630298fd71SBarry Smith   b->lvec  = NULL;
68640298fd71SBarry Smith   b->Mvctx = NULL;
6865ccd8e176SBarry Smith 
6866ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6867f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6868f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6869ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6870ccd8e176SBarry Smith 
6871f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68720298fd71SBarry Smith   b->spptr = NULL;
6873f60c3dc2SHong Zhang 
68749566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68759566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68769566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68779566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68789566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68799566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
68809566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
68819566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
68829566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
68839566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
68843d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
68859566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
68863d0639e7SStefano Zampini #endif
6887d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6888d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6889d5e393b6SSuyash Tandon #endif
68903d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
68919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
68923d0639e7SStefano Zampini #endif
68939779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
68949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6895191b95cbSRichard Tran Mills #endif
68969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
68979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
68989566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
68999566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
69005d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
69019566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
69025d7652ecSHong Zhang #endif
6903d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
69049566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6905d24d4204SJose E. Roman #endif
69069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
69079566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
69083dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
69099566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
69109566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
69113dad0653Sstefano_zampini #endif
69129566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
69139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
69149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
69159566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
69169566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
69173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6918ccd8e176SBarry Smith }
691981824310SBarry Smith 
6920cce60c4dSBarry Smith /*@C
692111a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
692203bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
692303bfb495SBarry Smith 
6924d083f849SBarry Smith   Collective
692503bfb495SBarry Smith 
692603bfb495SBarry Smith   Input Parameters:
692703bfb495SBarry Smith + comm - MPI communicator
692811a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
692903bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
693011a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
69312ef1f0ffSBarry Smith        calculated if `N` is given) For square matrices `n` is almost always `m`.
69322ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69332ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6934483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
693504ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
693603bfb495SBarry Smith . a    - matrix values
6937483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69382ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
693903bfb495SBarry Smith - oa   - matrix values
694003bfb495SBarry Smith 
694103bfb495SBarry Smith   Output Parameter:
694203bfb495SBarry Smith . mat - the matrix
694303bfb495SBarry Smith 
694403bfb495SBarry Smith   Level: advanced
694503bfb495SBarry Smith 
694603bfb495SBarry Smith   Notes:
69472ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc. The user
6948292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
694903bfb495SBarry Smith 
69502ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
695103bfb495SBarry Smith 
69522ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
695303bfb495SBarry Smith 
69547b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69557b55108eSBarry Smith 
6956dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6957dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6958dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6959dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
696011a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6961dca341c0SJed Brown   communication if it is known that only local entries will be set.
696203bfb495SBarry Smith 
69631cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6964db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69652b26979fSBarry Smith @*/
6966d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6967d71ae5a4SJacob Faibussowitsch {
696803bfb495SBarry Smith   Mat_MPIAIJ *maij;
696903bfb495SBarry Smith 
697003bfb495SBarry Smith   PetscFunctionBegin;
697108401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6972aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6973aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69749566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69759566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69769566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
697703bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69782205254eSKarl Rupp 
69798d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
698003bfb495SBarry Smith 
69819566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
69829566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
698303bfb495SBarry Smith 
69849566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
69859566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
698603bfb495SBarry Smith 
69879566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
69889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
69899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
69909566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
69919566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
69923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
699303bfb495SBarry Smith }
699403bfb495SBarry Smith 
69954e84afc0SStefano Zampini typedef struct {
69964e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
69974e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
69984e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
69994e84afc0SStefano Zampini 
70004e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
70014e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
70024e84afc0SStefano Zampini   PetscScalar *bufa;
70034e84afc0SStefano Zampini   Mat          P_oth;
70044e84afc0SStefano Zampini 
70054e84afc0SStefano Zampini   /* may take advantage of merging product->B */
7006ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
70074e84afc0SStefano Zampini 
7008ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
70094e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
70104e84afc0SStefano Zampini      of the temporary storage */
70114e84afc0SStefano Zampini   PetscBool reusesym;
70124e84afc0SStefano Zampini 
70134e84afc0SStefano Zampini   /* support for COO values insertion */
7014ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
7015ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
7016ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
7017ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
7018c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
7019c215019aSStefano Zampini   PetscMemType mtype;
70204e84afc0SStefano Zampini 
70214e84afc0SStefano Zampini   /* customization */
70224e84afc0SStefano Zampini   PetscBool abmerge;
7023abb89eb1SStefano Zampini   PetscBool P_oth_bind;
70244e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
70254e84afc0SStefano Zampini 
7026ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
7027d71ae5a4SJacob Faibussowitsch {
70284e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
70294e84afc0SStefano Zampini   PetscInt             i;
70304e84afc0SStefano Zampini 
70314e84afc0SStefano Zampini   PetscFunctionBegin;
70329566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70339566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70349566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70359566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70369566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70379566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70389566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
703948a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70409566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70419566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70429566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70439566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70449566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70459566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70474e84afc0SStefano Zampini }
70484e84afc0SStefano Zampini 
7049fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7050fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7051fff043a9SJunchao Zhang  */
7052d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7053d71ae5a4SJacob Faibussowitsch {
7054c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7055c215019aSStefano Zampini 
7056c215019aSStefano Zampini   PetscFunctionBegin;
70579566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7058c215019aSStefano Zampini   if (f) {
70599566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7060c215019aSStefano Zampini   } else {
7061c215019aSStefano Zampini     const PetscScalar *vv;
7062c215019aSStefano Zampini 
70639566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7064c215019aSStefano Zampini     if (n && idx) {
7065c215019aSStefano Zampini       PetscScalar    *w  = v;
7066c215019aSStefano Zampini       const PetscInt *oi = idx;
7067c215019aSStefano Zampini       PetscInt        j;
7068c215019aSStefano Zampini 
7069c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7070c215019aSStefano Zampini     } else {
70719566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7072c215019aSStefano Zampini     }
70739566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7074c215019aSStefano Zampini   }
70753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7076c215019aSStefano Zampini }
7077c215019aSStefano Zampini 
7078d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7079d71ae5a4SJacob Faibussowitsch {
70804e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
70814e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
70824e84afc0SStefano Zampini 
70834e84afc0SStefano Zampini   PetscFunctionBegin;
70844e84afc0SStefano Zampini   MatCheckProduct(C, 1);
708528b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
70864e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
70874e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
708848a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
708948a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
70904e84afc0SStefano Zampini   }
70914e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7092abb89eb1SStefano Zampini 
7093abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
709408401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
70959566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7096abb89eb1SStefano Zampini   }
70974e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
70984e84afc0SStefano Zampini     PetscInt noff = mmdata->off[i + 1] - mmdata->off[i];
70994e84afc0SStefano Zampini 
71004e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
71014e84afc0SStefano Zampini     if (noff) {
7102c215019aSStefano Zampini       PetscInt nown = mmdata->own[i + 1] - mmdata->own[i];
7103c215019aSStefano Zampini 
71049566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
71059566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
71064e84afc0SStefano Zampini       n_o += noff;
71074e84afc0SStefano Zampini       n_d += nown;
71084e84afc0SStefano Zampini     } else {
7109c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7110c215019aSStefano Zampini 
71119566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
71124e84afc0SStefano Zampini       n_d += mm->nz;
71134e84afc0SStefano Zampini     }
71144e84afc0SStefano Zampini   }
7115c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
71169566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71179566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71184e84afc0SStefano Zampini   }
71199566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
71203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71214e84afc0SStefano Zampini }
71224e84afc0SStefano Zampini 
71234e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
71244e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7125d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7126d71ae5a4SJacob Faibussowitsch {
71274e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7128ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
71294e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
71304e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71314e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71324e84afc0SStefano Zampini   IS                     glob      = NULL;
71334e84afc0SStefano Zampini   const char            *prefix;
71344e84afc0SStefano Zampini   char                   pprefix[256];
71354e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
713682a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
713782a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7138ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7139ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7140ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7141ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7142ddea5d60SJunchao Zhang 
71434e84afc0SStefano Zampini   MatProductType ptype;
7144d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71454e84afc0SStefano Zampini   PetscMPIInt    size;
71464e84afc0SStefano Zampini 
71474e84afc0SStefano Zampini   PetscFunctionBegin;
71484e84afc0SStefano Zampini   MatCheckProduct(C, 1);
714928b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71504e84afc0SStefano Zampini   ptype = product->type;
7151b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7152fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7153fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7154fa046f9fSJunchao Zhang   }
71554e84afc0SStefano Zampini   switch (ptype) {
71564e84afc0SStefano Zampini   case MATPRODUCT_AB:
71574e84afc0SStefano Zampini     A          = product->A;
71584e84afc0SStefano Zampini     P          = product->B;
71594e84afc0SStefano Zampini     m          = A->rmap->n;
71604e84afc0SStefano Zampini     n          = P->cmap->n;
71614e84afc0SStefano Zampini     M          = A->rmap->N;
71624e84afc0SStefano Zampini     N          = P->cmap->N;
7163ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71644e84afc0SStefano Zampini     break;
71654e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71664e84afc0SStefano Zampini     P          = product->A;
71674e84afc0SStefano Zampini     A          = product->B;
71684e84afc0SStefano Zampini     m          = P->cmap->n;
71694e84afc0SStefano Zampini     n          = A->cmap->n;
71704e84afc0SStefano Zampini     M          = P->cmap->N;
71714e84afc0SStefano Zampini     N          = A->cmap->N;
71724e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71734e84afc0SStefano Zampini     break;
71744e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71754e84afc0SStefano Zampini     A          = product->A;
71764e84afc0SStefano Zampini     P          = product->B;
71774e84afc0SStefano Zampini     m          = P->cmap->n;
71784e84afc0SStefano Zampini     n          = P->cmap->n;
71794e84afc0SStefano Zampini     M          = P->cmap->N;
71804e84afc0SStefano Zampini     N          = P->cmap->N;
71814e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71824e84afc0SStefano Zampini     break;
7183d71ae5a4SJacob Faibussowitsch   default:
7184d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
71854e84afc0SStefano Zampini   }
71869566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
71874e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
71884e84afc0SStefano Zampini 
71894e84afc0SStefano Zampini   /* defaults */
71904e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
71914e84afc0SStefano Zampini     mp[i]    = NULL;
71924e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
71934e84afc0SStefano Zampini     rmapt[i] = -1;
71944e84afc0SStefano Zampini     cmapt[i] = -1;
71954e84afc0SStefano Zampini     rmapa[i] = NULL;
71964e84afc0SStefano Zampini     cmapa[i] = NULL;
71974e84afc0SStefano Zampini   }
71984e84afc0SStefano Zampini 
71994e84afc0SStefano Zampini   /* customization */
72009566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
72014e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
72024e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
72034e84afc0SStefano Zampini     if (product->api_user) {
7204d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
72059566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72069566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7207d0609cedSBarry Smith       PetscOptionsEnd();
72084e84afc0SStefano Zampini     } else {
7209d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
72109566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72119566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7212d0609cedSBarry Smith       PetscOptionsEnd();
7213abb89eb1SStefano Zampini     }
7214abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7215abb89eb1SStefano Zampini     if (product->api_user) {
7216d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
72179566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7218d0609cedSBarry Smith       PetscOptionsEnd();
7219abb89eb1SStefano Zampini     } else {
7220d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
72219566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7222d0609cedSBarry Smith       PetscOptionsEnd();
72234e84afc0SStefano Zampini     }
72244e84afc0SStefano Zampini   }
72254e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
72264e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
72279566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
72289566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
72299566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
72309566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72319566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7232ddea5d60SJunchao Zhang 
7233ddea5d60SJunchao Zhang   cp = 0;
72344e84afc0SStefano Zampini   switch (ptype) {
72354e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72369566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72374e84afc0SStefano Zampini 
7238ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7239ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72404e84afc0SStefano Zampini       /* P is product->B */
72419566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72429566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72439566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72449566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72459566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72469566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72479566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72484e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72499566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72509566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72519566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72524e84afc0SStefano Zampini       rmapt[cp] = 1;
72534e84afc0SStefano Zampini       cmapt[cp] = 2;
72544e84afc0SStefano Zampini       cmapa[cp] = globidx;
72554e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72564e84afc0SStefano Zampini       cp++;
7257ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72589566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72599566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72609566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72619566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72629566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72639566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72644e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72659566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72669566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72674e84afc0SStefano Zampini       rmapt[cp] = 1;
72684e84afc0SStefano Zampini       cmapt[cp] = 1;
72694e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72704e84afc0SStefano Zampini       cp++;
72719566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72729566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72739566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72749566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72759566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72769566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72774e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72789566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72799566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72804e84afc0SStefano Zampini       rmapt[cp] = 1;
72814e84afc0SStefano Zampini       cmapt[cp] = 2;
72824e84afc0SStefano Zampini       cmapa[cp] = p->garray;
72834e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72844e84afc0SStefano Zampini       cp++;
72854e84afc0SStefano Zampini     }
7286ddea5d60SJunchao Zhang 
7287ddea5d60SJunchao Zhang     /* A_off * P_other */
72884e84afc0SStefano Zampini     if (mmdata->P_oth) {
72899566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
72909566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
72919566063dSJacob Faibussowitsch       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name));
72929566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
72939566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
72949566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72959566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72969566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72979566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72989566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72994e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73009566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73019566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73024e84afc0SStefano Zampini       rmapt[cp] = 1;
73034e84afc0SStefano Zampini       cmapt[cp] = 2;
73044e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73054e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73064e84afc0SStefano Zampini       cp++;
73074e84afc0SStefano Zampini     }
73084e84afc0SStefano Zampini     break;
7309ddea5d60SJunchao Zhang 
73104e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
73114e84afc0SStefano Zampini     /* A is product->B */
73129566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7313ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
73149566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
73159566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73169566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73179566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73189566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73199566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73204e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73219566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73229566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73239566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73244e84afc0SStefano Zampini       rmapt[cp] = 2;
73254e84afc0SStefano Zampini       rmapa[cp] = globidx;
73264e84afc0SStefano Zampini       cmapt[cp] = 2;
73274e84afc0SStefano Zampini       cmapa[cp] = globidx;
73284e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73294e84afc0SStefano Zampini       cp++;
73304e84afc0SStefano Zampini     } else {
73319566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73329566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73339566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73349566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73359566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73369566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73374e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73389566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73399566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73409566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73414e84afc0SStefano Zampini       rmapt[cp] = 1;
73424e84afc0SStefano Zampini       cmapt[cp] = 2;
73434e84afc0SStefano Zampini       cmapa[cp] = globidx;
73444e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73454e84afc0SStefano Zampini       cp++;
73469566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73479566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73489566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73499566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73509566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73519566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73524e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73539566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73549566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73554e84afc0SStefano Zampini       rmapt[cp] = 2;
73564e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73574e84afc0SStefano Zampini       cmapt[cp] = 2;
73584e84afc0SStefano Zampini       cmapa[cp] = globidx;
73594e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73604e84afc0SStefano Zampini       cp++;
73614e84afc0SStefano Zampini     }
73624e84afc0SStefano Zampini     break;
73634e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73649566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73654e84afc0SStefano Zampini     /* P is product->B */
73669566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73679566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73689566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73699566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73709566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73719566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73729566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73734e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73749566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73759566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73769566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73774e84afc0SStefano Zampini     rmapt[cp] = 2;
73784e84afc0SStefano Zampini     rmapa[cp] = globidx;
73794e84afc0SStefano Zampini     cmapt[cp] = 2;
73804e84afc0SStefano Zampini     cmapa[cp] = globidx;
73814e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
73824e84afc0SStefano Zampini     cp++;
73834e84afc0SStefano Zampini     if (mmdata->P_oth) {
73849566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
73859566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
73869566063dSJacob Faibussowitsch       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name));
73879566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73889566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73899566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73909566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73919566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73929566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73939566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73944e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73959566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73969566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73974e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
73984e84afc0SStefano Zampini       cp++;
73999566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
74009566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
74019566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74029566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74039566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74049566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74054e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74069566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74079566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74084e84afc0SStefano Zampini       rmapt[cp] = 2;
74094e84afc0SStefano Zampini       rmapa[cp] = globidx;
74104e84afc0SStefano Zampini       cmapt[cp] = 2;
74114e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
74124e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74134e84afc0SStefano Zampini       cp++;
74144e84afc0SStefano Zampini     }
74154e84afc0SStefano Zampini     break;
7416d71ae5a4SJacob Faibussowitsch   default:
7417d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
74184e84afc0SStefano Zampini   }
74194e84afc0SStefano Zampini   /* sanity check */
74209371c9d4SSatish Balay   if (size > 1)
74219371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
74224e84afc0SStefano Zampini 
74239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7424ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7425ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7426ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7427ddea5d60SJunchao Zhang   }
74284e84afc0SStefano Zampini   mmdata->cp             = cp;
74294e84afc0SStefano Zampini   C->product->data       = mmdata;
74304e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74314e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74324e84afc0SStefano Zampini 
7433c215019aSStefano Zampini   /* memory type */
7434c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74359566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7436d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74379566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7438c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7439d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74403214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7441c215019aSStefano Zampini 
74424e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7443ddea5d60SJunchao Zhang 
7444ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7445ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7446ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7447ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7448ddea5d60SJunchao Zhang   */
74494e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74504e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74514e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7452ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74534e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74544e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74554e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74564e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74574e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74584e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74594e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74604e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7461ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7462ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74634e84afc0SStefano Zampini       }
74644e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74654e84afc0SStefano Zampini   }
7466ddea5d60SJunchao Zhang 
7467ddea5d60SJunchao Zhang   /*
7468ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7469ddea5d60SJunchao Zhang 
7470ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7471ddea5d60SJunchao Zhang 
7472d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7473ddea5d60SJunchao Zhang 
7474ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7475ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7476ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7477ddea5d60SJunchao Zhang 
7478ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7479da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7480ddea5d60SJunchao Zhang   */
74819566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
74829566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7483ddea5d60SJunchao Zhang 
7484ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7485ddea5d60SJunchao Zhang   if (hasoffproc) {
74864e84afc0SStefano Zampini     PetscSF  msf;
74874e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
74884e84afc0SStefano Zampini 
74899566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
74909566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
74919566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7492ddea5d60SJunchao Zhang 
74934e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
74944e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
74954e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
74964e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7497ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
74984e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
74994e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
75004e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
75014e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
75024e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
75034e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
75044e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
75054e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
75064e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
75074e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
75084e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
75094e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
75104e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7511ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
75124e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
75134e84afc0SStefano Zampini               *coi++    = gr;
75144e84afc0SStefano Zampini               *idxoff++ = j;
75154e84afc0SStefano Zampini             }
75164e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
75174e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
75184e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75194e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
75204e84afc0SStefano Zampini             } else { /* offdiag */
75214e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75224e84afc0SStefano Zampini             }
75234e84afc0SStefano Zampini             ncoo_o += nz;
7524ddea5d60SJunchao Zhang           } else { /* this is a local row */
75254e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
75264e84afc0SStefano Zampini           }
75274e84afc0SStefano Zampini         }
75284e84afc0SStefano Zampini       }
75294e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
75304e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75314e84afc0SStefano Zampini     }
75324e84afc0SStefano Zampini 
75339566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75349566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75359566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75369566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75374e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75389566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75399566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75409566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75419566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75429566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75439566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7544ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75459566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75464e84afc0SStefano Zampini     coo_i = coo_i2;
75474e84afc0SStefano Zampini     coo_j = coo_j2;
75484e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75494e84afc0SStefano Zampini     ncoo = ncoo_d;
75509566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7551c215019aSStefano Zampini 
75529566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75539566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75549566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75554e84afc0SStefano Zampini   }
7556c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75574e84afc0SStefano Zampini 
7558ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75594e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75604e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75614e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75624e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75634e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75644e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75654e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75664e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75674e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75684e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75694e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75704e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75714e84afc0SStefano Zampini 
75724e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7573ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7574ddea5d60SJunchao Zhang       /* fill coo_i */
75754e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75764e84afc0SStefano Zampini         const PetscInt gr = i + rs;
75774e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
75784e84afc0SStefano Zampini       }
7579ddea5d60SJunchao Zhang       /* fill coo_j */
7580ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
75819566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7582ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7583ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7584ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
75854e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
75864e84afc0SStefano Zampini       }
75874e84afc0SStefano Zampini       ncoo_d += mm->nz;
7588ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
75894e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75904e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
75914e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
75924e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7593ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
75944e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7595ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
75964e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
75974e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75984e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7599ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
76004e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
76014e84afc0SStefano Zampini           }
76024e84afc0SStefano Zampini           ncoo_d += nz;
76034e84afc0SStefano Zampini         }
76044e84afc0SStefano Zampini       }
76054e84afc0SStefano Zampini     }
76064e84afc0SStefano Zampini   }
760748a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
76089566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
760948a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
76109566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7611ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
76129566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
76134e84afc0SStefano Zampini 
76144e84afc0SStefano Zampini   /* preallocate with COO data */
76159566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76169566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76184e84afc0SStefano Zampini }
76194e84afc0SStefano Zampini 
7620d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7621d71ae5a4SJacob Faibussowitsch {
76224e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76234e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76244e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7625abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76264e84afc0SStefano Zampini #else
76274e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76284e84afc0SStefano Zampini #endif
76294e84afc0SStefano Zampini 
76304e84afc0SStefano Zampini   PetscFunctionBegin;
76314e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76324e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
763348a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
763465e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7635abb89eb1SStefano Zampini     switch (product->type) {
7636abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7637abb89eb1SStefano Zampini       if (product->api_user) {
7638d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76399566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7640d0609cedSBarry Smith         PetscOptionsEnd();
7641abb89eb1SStefano Zampini       } else {
7642d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76439566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7644d0609cedSBarry Smith         PetscOptionsEnd();
7645abb89eb1SStefano Zampini       }
7646abb89eb1SStefano Zampini       break;
7647abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7648abb89eb1SStefano Zampini       if (product->api_user) {
7649d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76509566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7651d0609cedSBarry Smith         PetscOptionsEnd();
7652abb89eb1SStefano Zampini       } else {
7653d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76549566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7655d0609cedSBarry Smith         PetscOptionsEnd();
7656abb89eb1SStefano Zampini       }
7657abb89eb1SStefano Zampini       break;
7658abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7659abb89eb1SStefano Zampini       if (product->api_user) {
7660d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76619566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7662d0609cedSBarry Smith         PetscOptionsEnd();
7663abb89eb1SStefano Zampini       } else {
7664d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76659566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7666d0609cedSBarry Smith         PetscOptionsEnd();
7667abb89eb1SStefano Zampini       }
7668abb89eb1SStefano Zampini       break;
7669d71ae5a4SJacob Faibussowitsch     default:
7670d71ae5a4SJacob Faibussowitsch       break;
7671abb89eb1SStefano Zampini     }
7672abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7673abb89eb1SStefano Zampini   }
76744e84afc0SStefano Zampini #endif
76754e84afc0SStefano Zampini   if (match) {
76764e84afc0SStefano Zampini     switch (product->type) {
76774e84afc0SStefano Zampini     case MATPRODUCT_AB:
76784e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7679d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7680d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7681d71ae5a4SJacob Faibussowitsch       break;
7682d71ae5a4SJacob Faibussowitsch     default:
7683d71ae5a4SJacob Faibussowitsch       break;
76844e84afc0SStefano Zampini     }
76854e84afc0SStefano Zampini   }
76864e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
76879566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
76883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
768981824310SBarry Smith }
769098921bdaSJacob Faibussowitsch 
769198921bdaSJacob Faibussowitsch /*
769272833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
769372833a62Smarkadams4 
769472833a62Smarkadams4    n - the number of block indices in cc[]
769572833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
769672833a62Smarkadams4 */
7697d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7698d71ae5a4SJacob Faibussowitsch {
769972833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
770072833a62Smarkadams4   const PetscInt *idx;
770172833a62Smarkadams4 
770272833a62Smarkadams4   PetscFunctionBegin;
770372833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
770472833a62Smarkadams4   if (nidx) {
770572833a62Smarkadams4     cnt     = 0;
770672833a62Smarkadams4     cc[cnt] = idx[0] / bs;
770772833a62Smarkadams4     for (j = 1; j < nidx; j++) {
770872833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
770972833a62Smarkadams4     }
771072833a62Smarkadams4   }
771172833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
771272833a62Smarkadams4   *n = cnt + 1;
77133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
771472833a62Smarkadams4 }
771572833a62Smarkadams4 
771672833a62Smarkadams4 /*
771772833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
771872833a62Smarkadams4 
771972833a62Smarkadams4     ncollapsed - the number of block indices
772072833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
772172833a62Smarkadams4 */
7722d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7723d71ae5a4SJacob Faibussowitsch {
772472833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
772572833a62Smarkadams4 
772672833a62Smarkadams4   PetscFunctionBegin;
772772833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
772872833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
772972833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
773072833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77319371c9d4SSatish Balay     cprevtmp = cprev;
77329371c9d4SSatish Balay     cprev    = merged;
77339371c9d4SSatish Balay     merged   = cprevtmp;
773472833a62Smarkadams4   }
773572833a62Smarkadams4   *ncollapsed = nprev;
773672833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
773872833a62Smarkadams4 }
773972833a62Smarkadams4 
77402d776b49SBarry Smith /*
774172833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
774272833a62Smarkadams4 
774372833a62Smarkadams4  Input Parameter:
774472833a62Smarkadams4  . Amat - matrix
774572833a62Smarkadams4  - symmetrize - make the result symmetric
774672833a62Smarkadams4  + scale - scale with diagonal
774772833a62Smarkadams4 
774872833a62Smarkadams4  Output Parameter:
774972833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
775072833a62Smarkadams4 
775172833a62Smarkadams4 */
7752e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7753d71ae5a4SJacob Faibussowitsch {
775472833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
775572833a62Smarkadams4   MPI_Comm  comm;
775672833a62Smarkadams4   Mat       Gmat;
775772833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
775872833a62Smarkadams4   Mat       a, b, c;
775972833a62Smarkadams4   MatType   jtype;
776072833a62Smarkadams4 
776172833a62Smarkadams4   PetscFunctionBegin;
776272833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
776372833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
776472833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
776572833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
776672833a62Smarkadams4   nloc = (Iend - Istart) / bs;
776772833a62Smarkadams4 
776872833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
776972833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
777072833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
777172833a62Smarkadams4 
777272833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
777372833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
777472833a62Smarkadams4      implementation */
777572833a62Smarkadams4   if (bs > 1) {
777672833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
777772833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
777872833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
777972833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
778072833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
778172833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
778272833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
77832cf69117Smarkadams4       MatScalar *aa, val, *AA;
77842cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
77859371c9d4SSatish Balay       if (isseqaij) {
77869371c9d4SSatish Balay         a = Amat;
77879371c9d4SSatish Balay         b = NULL;
77889371c9d4SSatish Balay       } else {
778972833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
77909371c9d4SSatish Balay         a             = d->A;
77919371c9d4SSatish Balay         b             = d->B;
779272833a62Smarkadams4       }
779372833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
779472833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
779572833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
77962cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
779759ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
779859ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
779959ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
780059ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
780159ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
780272833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
780359ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
780459ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
780559ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
780659ee9f9fSPierre Jolivet             else {
780759ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
780859ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
780959ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
781072833a62Smarkadams4               }
781159ee9f9fSPierre Jolivet             }
781259ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
781359ee9f9fSPierre Jolivet           }
781459ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
781572833a62Smarkadams4           if (!ok) {
781672833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
781759ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
781872833a62Smarkadams4             goto old_bs;
781972833a62Smarkadams4           }
782072833a62Smarkadams4         }
782172833a62Smarkadams4       }
782272833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
782372833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
782472833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78252cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
782672833a62Smarkadams4       // diag
782772833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
782872833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
782972833a62Smarkadams4         ai               = aseq->i;
783072833a62Smarkadams4         n                = ai[brow + 1] - ai[brow];
783172833a62Smarkadams4         aj               = aseq->j + ai[brow];
783272833a62Smarkadams4         for (int k = 0; k < n; k += bs) {        // block columns
783372833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
783472833a62Smarkadams4           val        = 0;
7835e02fb3cdSMark Adams           if (index_size == 0) {
783672833a62Smarkadams4             for (int ii = 0; ii < bs; ii++) { // rows in block
783772833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
783872833a62Smarkadams4               for (int jj = 0; jj < bs; jj++) {         // columns in block
783972833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
784072833a62Smarkadams4               }
784172833a62Smarkadams4             }
7842e02fb3cdSMark Adams           } else {                                       // use (index,index) value if provided
7843e02fb3cdSMark Adams             for (int iii = 0; iii < index_size; iii++) { // rows in block
7844e02fb3cdSMark Adams               int ii = index[iii];
7845e02fb3cdSMark Adams               aa     = aseq->a + ai[brow + ii] + k;
7846e02fb3cdSMark Adams               for (int jjj = 0; jjj < index_size; jjj++) { // columns in block
7847e02fb3cdSMark Adams                 int jj = index[jjj];
7848cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7849e02fb3cdSMark Adams               }
7850e02fb3cdSMark Adams             }
7851e02fb3cdSMark Adams           }
785259ee9f9fSPierre Jolivet           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
785372833a62Smarkadams4           AA[k / bs] = val;
785472833a62Smarkadams4         }
785572833a62Smarkadams4         grow = Istart / bs + brow / bs;
785672833a62Smarkadams4         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, INSERT_VALUES));
785772833a62Smarkadams4       }
785872833a62Smarkadams4       // off-diag
785972833a62Smarkadams4       if (ismpiaij) {
786072833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
786172833a62Smarkadams4         const PetscScalar *vals;
786272833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
786372833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
786472833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
786572833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
786672833a62Smarkadams4           for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
786759ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
786872833a62Smarkadams4             AA[k / bs] = 0;
786972833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
787072833a62Smarkadams4           }
787172833a62Smarkadams4           nc = ncols / bs;
787272833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7873e02fb3cdSMark Adams           if (index_size == 0) {
787472833a62Smarkadams4             for (int ii = 0; ii < bs; ii++) { // rows in block
787572833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
787672833a62Smarkadams4               for (int k = 0; k < ncols; k += bs) {
787772833a62Smarkadams4                 for (int jj = 0; jj < bs; jj++) { // cols in block
787859ee9f9fSPierre Jolivet                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
787972833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
788072833a62Smarkadams4                 }
788172833a62Smarkadams4               }
788272833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
788372833a62Smarkadams4             }
7884e02fb3cdSMark Adams           } else {                                       // use (index,index) value if provided
7885e02fb3cdSMark Adams             for (int iii = 0; iii < index_size; iii++) { // rows in block
7886e02fb3cdSMark Adams               int ii = index[iii];
7887e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
7888e02fb3cdSMark Adams               for (int k = 0; k < ncols; k += bs) {
7889e02fb3cdSMark Adams                 for (int jjj = 0; jjj < index_size; jjj++) { // cols in block
7890e02fb3cdSMark Adams                   int jj = index[jjj];
7891e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7892e02fb3cdSMark Adams                 }
7893e02fb3cdSMark Adams               }
7894e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7895e02fb3cdSMark Adams             }
7896e02fb3cdSMark Adams           }
789772833a62Smarkadams4           grow = Istart / bs + brow / bs;
789872833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, INSERT_VALUES));
789972833a62Smarkadams4         }
790072833a62Smarkadams4       }
790172833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
790272833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79032cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
790472833a62Smarkadams4     } else {
790572833a62Smarkadams4       const PetscScalar *vals;
790672833a62Smarkadams4       const PetscInt    *idx;
790772833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
790872833a62Smarkadams4     old_bs:
790972833a62Smarkadams4       /*
791072833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
791172833a62Smarkadams4        */
791272833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
791372833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
791472833a62Smarkadams4       if (isseqaij) {
791572833a62Smarkadams4         PetscInt max_d_nnz;
791672833a62Smarkadams4         /*
791772833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
791872833a62Smarkadams4          */
791972833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
792072833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
792172833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
792248a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
792372833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
792472833a62Smarkadams4       } else if (ismpiaij) {
792572833a62Smarkadams4         Mat             Daij, Oaij;
792672833a62Smarkadams4         const PetscInt *garray;
792772833a62Smarkadams4         PetscInt        max_d_nnz;
792872833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
792972833a62Smarkadams4         /*
793072833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
793172833a62Smarkadams4          */
793272833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
793372833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
793472833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
793548a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
793672833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
793772833a62Smarkadams4         /*
793872833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
793972833a62Smarkadams4          */
794072833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
794172833a62Smarkadams4           o_nnz[jj] = 0;
794272833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
794372833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
794472833a62Smarkadams4             o_nnz[jj] += ncols;
794572833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
794672833a62Smarkadams4           }
794772833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
794872833a62Smarkadams4         }
794972833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
795072833a62Smarkadams4       /* get scalar copy (norms) of matrix */
795172833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
795272833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
795372833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
795472833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
795572833a62Smarkadams4         PetscInt dest_row = Ii / bs;
795672833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
795772833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
795872833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
795972833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
796072833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
796172833a62Smarkadams4         }
796272833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
796372833a62Smarkadams4       }
796472833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
796572833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
796672833a62Smarkadams4     }
796772833a62Smarkadams4   } else {
79682d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
79692d776b49SBarry Smith     else {
79702d776b49SBarry Smith       Gmat = Amat;
79712d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
79722d776b49SBarry Smith     }
79739371c9d4SSatish Balay     if (isseqaij) {
79749371c9d4SSatish Balay       a = Gmat;
79759371c9d4SSatish Balay       b = NULL;
79769371c9d4SSatish Balay     } else {
797772833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
79789371c9d4SSatish Balay       a             = d->A;
79799371c9d4SSatish Balay       b             = d->B;
798072833a62Smarkadams4     }
79812d776b49SBarry Smith     if (filter >= 0 || scale) {
79822d776b49SBarry Smith       /* take absolute value of each entry */
798372833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
798472833a62Smarkadams4         MatInfo      info;
798572833a62Smarkadams4         PetscScalar *avals;
798672833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
798772833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
798872833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
798972833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
799072833a62Smarkadams4       }
799172833a62Smarkadams4     }
79922d776b49SBarry Smith   }
799372833a62Smarkadams4   if (symmetrize) {
7994b94d7dedSBarry Smith     PetscBool isset, issym;
7995b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
7996b94d7dedSBarry Smith     if (!isset || !issym) {
799772833a62Smarkadams4       Mat matTrans;
799872833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
79991fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
800072833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
800172833a62Smarkadams4     }
800272833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80032d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
800472833a62Smarkadams4   if (scale) {
800572833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
800672833a62Smarkadams4     Vec diag;
800772833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
800872833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
800972833a62Smarkadams4     PetscCall(VecReciprocal(diag));
801072833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
801172833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
801272833a62Smarkadams4     PetscCall(VecDestroy(&diag));
801372833a62Smarkadams4   }
801472833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80152d776b49SBarry Smith 
80162d776b49SBarry Smith   if (filter >= 0) {
80172ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80182ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80192d776b49SBarry Smith   }
802072833a62Smarkadams4   *a_Gmat = Gmat;
80213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
802272833a62Smarkadams4 }
802372833a62Smarkadams4 
802472833a62Smarkadams4 /*
802598921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
802698921bdaSJacob Faibussowitsch */
802798921bdaSJacob Faibussowitsch #include <petsc/private/fortranimpl.h>
802898921bdaSJacob Faibussowitsch 
802998921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80309566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80319566063dSJacob Faibussowitsch #undef PetscCall
80329371c9d4SSatish Balay #define PetscCall(...) \
80339371c9d4SSatish Balay   do { \
80345f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
803598921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
803698921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
803798921bdaSJacob Faibussowitsch       return; \
803898921bdaSJacob Faibussowitsch     } \
803998921bdaSJacob Faibussowitsch   } while (0)
804098921bdaSJacob Faibussowitsch 
804198921bdaSJacob Faibussowitsch #undef SETERRQ
80429371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80439371c9d4SSatish Balay   do { \
804498921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
804598921bdaSJacob Faibussowitsch     return; \
804698921bdaSJacob Faibussowitsch   } while (0)
804798921bdaSJacob Faibussowitsch 
804898921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
804998921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
805098921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
805198921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
805298921bdaSJacob Faibussowitsch #else
805398921bdaSJacob Faibussowitsch #endif
8054d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8055d71ae5a4SJacob Faibussowitsch {
805698921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
805798921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
805898921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
805998921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
806098921bdaSJacob Faibussowitsch   PetscScalar value;
806198921bdaSJacob Faibussowitsch 
806298921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
806398921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80645f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
806598921bdaSJacob Faibussowitsch   {
806698921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
806798921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
806898921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
806998921bdaSJacob Faibussowitsch 
807098921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
807198921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
807298921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
807398921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
807498921bdaSJacob Faibussowitsch     MatScalar  *aa;
807598921bdaSJacob Faibussowitsch     PetscBool   ignorezeroentries = (((a->ignorezeroentries) && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
807698921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
807798921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
807898921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
807998921bdaSJacob Faibussowitsch     MatScalar  *ba;
808098921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
808198921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
808298921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
808398921bdaSJacob Faibussowitsch 
808498921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
808598921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
808698921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
808798921bdaSJacob Faibussowitsch 
808898921bdaSJacob Faibussowitsch     PetscFunctionBegin;
80899566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
80909566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
809198921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
809298921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
80936bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
809498921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
809598921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
809698921bdaSJacob Faibussowitsch         lastcol1 = -1;
809798921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
809898921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
809998921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
810098921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
810198921bdaSJacob Faibussowitsch         low1     = 0;
810298921bdaSJacob Faibussowitsch         high1    = nrow1;
810398921bdaSJacob Faibussowitsch         lastcol2 = -1;
810498921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
810598921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
810698921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
810798921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
810898921bdaSJacob Faibussowitsch         low2     = 0;
810998921bdaSJacob Faibussowitsch         high2    = nrow2;
811098921bdaSJacob Faibussowitsch 
811198921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
811298921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
811398921bdaSJacob Faibussowitsch           else value = v[i + j * m];
811498921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
811598921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
811698921bdaSJacob Faibussowitsch             col = in[j] - cstart;
811798921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
811898921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
811998921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
812063a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
812198921bdaSJacob Faibussowitsch           } else {
812298921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
812348a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
812498921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8125eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
812698921bdaSJacob Faibussowitsch               col--;
812798921bdaSJacob Faibussowitsch #else
812898921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
812998921bdaSJacob Faibussowitsch #endif
813098921bdaSJacob Faibussowitsch               if (col < 0 && !((Mat_SeqAIJ *)(aij->A->data))->nonew) {
81319566063dSJacob Faibussowitsch                 PetscCall(MatDisAssemble_MPIAIJ(mat));
813298921bdaSJacob Faibussowitsch                 col = in[j];
813398921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
813498921bdaSJacob Faibussowitsch                 B        = aij->B;
813598921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81369371c9d4SSatish Balay                 bimax    = b->imax;
81379371c9d4SSatish Balay                 bi       = b->i;
81389371c9d4SSatish Balay                 bilen    = b->ilen;
81399371c9d4SSatish Balay                 bj       = b->j;
814098921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
814198921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
814298921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
814398921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
814498921bdaSJacob Faibussowitsch                 low2     = 0;
814598921bdaSJacob Faibussowitsch                 high2    = nrow2;
814698921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
814798921bdaSJacob Faibussowitsch                 ba       = b->a;
814898921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
814998921bdaSJacob Faibussowitsch               }
815098921bdaSJacob Faibussowitsch             } else col = in[j];
815198921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
815298921bdaSJacob Faibussowitsch           }
815398921bdaSJacob Faibussowitsch         }
815498921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
815598921bdaSJacob Faibussowitsch         if (roworiented) {
81569566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
815798921bdaSJacob Faibussowitsch         } else {
81589566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
815998921bdaSJacob Faibussowitsch         }
816098921bdaSJacob Faibussowitsch       }
816198921bdaSJacob Faibussowitsch     }
81629566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81639566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
816498921bdaSJacob Faibussowitsch   }
816598921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
816698921bdaSJacob Faibussowitsch }
816772833a62Smarkadams4 
816898921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
816998921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
817098921bdaSJacob Faibussowitsch  * original definitions */
81719566063dSJacob Faibussowitsch #undef PetscCall
817298921bdaSJacob Faibussowitsch #undef SETERRQ
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