1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 1026cec326SBarry Smith { 1126cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1226cec326SBarry Smith 1326cec326SBarry Smith PetscFunctionBegin; 1426cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1526cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1626cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 1726cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 1826cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2026cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2126cec326SBarry Smith #else 2226cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 2326cec326SBarry Smith #endif 2426cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 2526cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 2626cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 2726cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 2826cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 2926cec326SBarry Smith 3026cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3126cec326SBarry Smith 3226cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 3326cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 3426cec326SBarry Smith 3526cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 4126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 4326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 4726cec326SBarry Smith #endif 4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 4926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 5026cec326SBarry Smith #endif 5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 5226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 5326cec326SBarry Smith #endif 5426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 5726cec326SBarry Smith #endif 5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 6026cec326SBarry Smith #endif 6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 6226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 6326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 6426cec326SBarry Smith #endif 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 6926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 7326cec326SBarry Smith #endif 7426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 7626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 7726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 7926cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 8026cec326SBarry Smith } 8126cec326SBarry Smith 8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 8326cec326SBarry Smith #define TYPE AIJ 8426cec326SBarry Smith #define TYPE_AIJ 8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 8626cec326SBarry Smith #undef TYPE 8726cec326SBarry Smith #undef TYPE_AIJ 8826cec326SBarry Smith 89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 90d71ae5a4SJacob Faibussowitsch { 918a9c020eSBarry Smith Mat B; 928a9c020eSBarry Smith 938a9c020eSBarry Smith PetscFunctionBegin; 948a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 958a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 968a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 97501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 998a9c020eSBarry Smith } 1008a9c020eSBarry Smith 101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 102d71ae5a4SJacob Faibussowitsch { 1038a9c020eSBarry Smith Mat B; 1048a9c020eSBarry Smith 1058a9c020eSBarry Smith PetscFunctionBegin; 1068a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1078a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 108501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1108a9c020eSBarry Smith } 1118a9c020eSBarry Smith 11201bebe75SBarry Smith /*MC 11301bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 11401bebe75SBarry Smith 11511a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 11611a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 11711a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 11801bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 11901bebe75SBarry Smith the above preallocation routines for simplicity. 12001bebe75SBarry Smith 12127430b45SBarry Smith Options Database Key: 12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 12301bebe75SBarry Smith 12411a5261eSBarry Smith Developer Note: 1252ef1f0ffSBarry Smith Level: beginner 1262ef1f0ffSBarry Smith 12711a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 12801bebe75SBarry Smith enough exist. 12901bebe75SBarry Smith 1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 13101bebe75SBarry Smith M*/ 13201bebe75SBarry Smith 13301bebe75SBarry Smith /*MC 13401bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 13501bebe75SBarry Smith 13611a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 13711a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 13811a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 13901bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14001bebe75SBarry Smith the above preallocation routines for simplicity. 14101bebe75SBarry Smith 14227430b45SBarry Smith Options Database Key: 14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 14401bebe75SBarry Smith 14501bebe75SBarry Smith Level: beginner 14601bebe75SBarry Smith 1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 14801bebe75SBarry Smith M*/ 14901bebe75SBarry Smith 150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 151d71ae5a4SJacob Faibussowitsch { 152f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 153f74ef234SStefano Zampini 154f74ef234SStefano Zampini PetscFunctionBegin; 155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 156b470e4b4SRichard Tran Mills A->boundtocpu = flg; 157f74ef234SStefano Zampini #endif 1581baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1591baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1603120d049SRichard Tran Mills 1613120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1623120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1633120d049SRichard Tran Mills * to differ from the parent matrix. */ 1641baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1651baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1663120d049SRichard Tran Mills 1673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 168f74ef234SStefano Zampini } 169f74ef234SStefano Zampini 170ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 171d71ae5a4SJacob Faibussowitsch { 17226bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 17326bda2c4Sstefano_zampini 17426bda2c4Sstefano_zampini PetscFunctionBegin; 17546533700Sstefano_zampini if (mat->A) { 1769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1779566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 17846533700Sstefano_zampini } 1793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18026bda2c4Sstefano_zampini } 18126bda2c4Sstefano_zampini 182ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 183d71ae5a4SJacob Faibussowitsch { 18427d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 18527d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 18627d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 18727d4218bSShri Abhyankar const PetscInt *ia, *ib; 188ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 18927d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 19027d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 19127d4218bSShri Abhyankar 19227d4218bSShri Abhyankar PetscFunctionBegin; 193f4259b30SLisandro Dalcin *keptrows = NULL; 194ce496241SStefano Zampini 19527d4218bSShri Abhyankar ia = a->i; 19627d4218bSShri Abhyankar ib = b->i; 1979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 1989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 19927d4218bSShri Abhyankar for (i = 0; i < m; i++) { 20027d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 20127d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 20227d4218bSShri Abhyankar if (!na && !nb) { 20327d4218bSShri Abhyankar cnt++; 20427d4218bSShri Abhyankar goto ok1; 20527d4218bSShri Abhyankar } 206ce496241SStefano Zampini aa = aav + ia[i]; 20727d4218bSShri Abhyankar for (j = 0; j < na; j++) { 20827d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 20927d4218bSShri Abhyankar } 2108e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 21127d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 21227d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 21327d4218bSShri Abhyankar } 21427d4218bSShri Abhyankar cnt++; 21527d4218bSShri Abhyankar ok1:; 21627d4218bSShri Abhyankar } 2171c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 218ce496241SStefano Zampini if (!n0rows) { 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 222ce496241SStefano Zampini } 2239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 22427d4218bSShri Abhyankar cnt = 0; 22527d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22627d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22727d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22827d4218bSShri Abhyankar if (!na && !nb) continue; 229ce496241SStefano Zampini aa = aav + ia[i]; 23027d4218bSShri Abhyankar for (j = 0; j < na; j++) { 23127d4218bSShri Abhyankar if (aa[j] != 0.0) { 23227d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23327d4218bSShri Abhyankar goto ok2; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar } 2368e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23727d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23827d4218bSShri Abhyankar if (bb[j] != 0.0) { 23927d4218bSShri Abhyankar rows[cnt++] = rstart + i; 24027d4218bSShri Abhyankar goto ok2; 24127d4218bSShri Abhyankar } 24227d4218bSShri Abhyankar } 24327d4218bSShri Abhyankar ok2:; 24427d4218bSShri Abhyankar } 2459566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24927d4218bSShri Abhyankar } 25027d4218bSShri Abhyankar 251ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 252d71ae5a4SJacob Faibussowitsch { 25399e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 25494342113SStefano Zampini PetscBool cong; 25599e65526SBarry Smith 25699e65526SBarry Smith PetscFunctionBegin; 2579566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 25894342113SStefano Zampini if (Y->assembled && cong) { 2599566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 26099e65526SBarry Smith } else { 2619566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 26299e65526SBarry Smith } 2633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26499e65526SBarry Smith } 26599e65526SBarry Smith 266ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 267d71ae5a4SJacob Faibussowitsch { 268f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 269f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 270f1f41ecbSJed Brown 271f1f41ecbSJed Brown PetscFunctionBegin; 2720298fd71SBarry Smith *zrows = NULL; 2739566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2749566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 275f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2769566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278f1f41ecbSJed Brown } 279f1f41ecbSJed Brown 280ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 281d71ae5a4SJacob Faibussowitsch { 2820716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 283a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 2840716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 2850716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 2860716a85fSBarry Smith PetscReal *work; 287ce496241SStefano Zampini const PetscScalar *dummy; 2880716a85fSBarry Smith 2890716a85fSBarry Smith PetscFunctionBegin; 2909566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 2919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 2929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 2939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 2949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 2959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 296857cbf51SRichard Tran Mills if (type == NORM_2) { 297ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 298ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 299857cbf51SRichard Tran Mills } else if (type == NORM_1) { 300ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 301ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 302857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 303ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 304ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 305857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 306ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 307ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 308857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 309ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 310ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 311857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 312857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 3131c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3140716a85fSBarry Smith } else { 3151c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3160716a85fSBarry Smith } 3179566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 318857cbf51SRichard Tran Mills if (type == NORM_2) { 319a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 320857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 321a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3220716a85fSBarry Smith } 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3240716a85fSBarry Smith } 3250716a85fSBarry Smith 326ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 327d71ae5a4SJacob Faibussowitsch { 328e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 329e52d2c62SBarry Smith IS sis, gis; 330e52d2c62SBarry Smith const PetscInt *isis, *igis; 331e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 332e52d2c62SBarry Smith 333e52d2c62SBarry Smith PetscFunctionBegin; 3349566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3359566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3369566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3379566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 340e52d2c62SBarry Smith 3419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3429566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3439566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 344e52d2c62SBarry Smith n = ngis + nsis; 3459566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3469566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 347e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3489566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 349e52d2c62SBarry Smith 3509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 355e52d2c62SBarry Smith } 356e52d2c62SBarry Smith 357dd6ea824SBarry Smith /* 3580f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3599e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3600f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3610f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 36272fa4726SStefano Zampini has an order N integer array but is fast to access. 3639e25ed09SBarry Smith */ 364d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 365d71ae5a4SJacob Faibussowitsch { 36644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 367d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 368dbb450caSBarry Smith 3693a40ed3dSBarry Smith PetscFunctionBegin; 37008401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 371aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 372eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 373c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 374b1fc9764SSatish Balay #else 3759566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 376905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 377b1fc9764SSatish Balay #endif 3783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3799e25ed09SBarry Smith } 3809e25ed09SBarry Smith 381d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 382a8f51744SPierre Jolivet do { \ 383db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 384db4deed7SKarl Rupp else high1 = nrow1; \ 385fd3458f5SBarry Smith lastcol1 = col; \ 386fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 387fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 388fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 389fd3458f5SBarry Smith else low1 = t; \ 390ba4e3ef2SSatish Balay } \ 391fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 392fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 393fd3458f5SBarry Smith if (rp1[_i] == col) { \ 3940c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 3950c0d7e18SFande Kong ap1[_i] += value; \ 3960c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 3970c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 3989371c9d4SSatish Balay } else ap1[_i] = value; \ 39930770e4dSSatish Balay goto a_noinsert; \ 4000520107fSSatish Balay } \ 4010520107fSSatish Balay } \ 4029371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4039371c9d4SSatish Balay low1 = 0; \ 4049371c9d4SSatish Balay high1 = nrow1; \ 4059371c9d4SSatish Balay goto a_noinsert; \ 4069371c9d4SSatish Balay } \ 4079371c9d4SSatish Balay if (nonew == 1) { \ 4089371c9d4SSatish Balay low1 = 0; \ 4099371c9d4SSatish Balay high1 = nrow1; \ 4109371c9d4SSatish Balay goto a_noinsert; \ 4119371c9d4SSatish Balay } \ 41208401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 413fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4149371c9d4SSatish Balay N = nrow1++ - 1; \ 4159371c9d4SSatish Balay a->nz++; \ 4169371c9d4SSatish Balay high1++; \ 4170520107fSSatish Balay /* shift up all the later entries in this row */ \ 4189566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4199566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 420fd3458f5SBarry Smith rp1[_i] = col; \ 421fd3458f5SBarry Smith ap1[_i] = value; \ 422e56f5c9eSBarry Smith A->nonzerostate++; \ 42330770e4dSSatish Balay a_noinsert:; \ 424fd3458f5SBarry Smith ailen[row] = nrow1; \ 425a8f51744SPierre Jolivet } while (0) 4260a198c4cSBarry Smith 427d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 428a8f51744SPierre Jolivet do { \ 429db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 430db4deed7SKarl Rupp else high2 = nrow2; \ 431fd3458f5SBarry Smith lastcol2 = col; \ 432fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 433fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 434fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 435fd3458f5SBarry Smith else low2 = t; \ 436ba4e3ef2SSatish Balay } \ 437fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 438fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 439fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4400c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4410c0d7e18SFande Kong ap2[_i] += value; \ 4420c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4439371c9d4SSatish Balay } else ap2[_i] = value; \ 44430770e4dSSatish Balay goto b_noinsert; \ 44530770e4dSSatish Balay } \ 44630770e4dSSatish Balay } \ 4479371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4489371c9d4SSatish Balay low2 = 0; \ 4499371c9d4SSatish Balay high2 = nrow2; \ 4509371c9d4SSatish Balay goto b_noinsert; \ 4519371c9d4SSatish Balay } \ 4529371c9d4SSatish Balay if (nonew == 1) { \ 4539371c9d4SSatish Balay low2 = 0; \ 4549371c9d4SSatish Balay high2 = nrow2; \ 4559371c9d4SSatish Balay goto b_noinsert; \ 4569371c9d4SSatish Balay } \ 45708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 458fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4599371c9d4SSatish Balay N = nrow2++ - 1; \ 4609371c9d4SSatish Balay b->nz++; \ 4619371c9d4SSatish Balay high2++; \ 46230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4649566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 465fd3458f5SBarry Smith rp2[_i] = col; \ 466fd3458f5SBarry Smith ap2[_i] = value; \ 467e56f5c9eSBarry Smith B->nonzerostate++; \ 46830770e4dSSatish Balay b_noinsert:; \ 469fd3458f5SBarry Smith bilen[row] = nrow2; \ 470a8f51744SPierre Jolivet } while (0) 47130770e4dSSatish Balay 472ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 473d71ae5a4SJacob Faibussowitsch { 4742fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4752fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4762fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 477fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4782fd7e33dSBarry Smith 4792fd7e33dSBarry Smith PetscFunctionBegin; 4802fd7e33dSBarry Smith /* code only works for square matrices A */ 4812fd7e33dSBarry Smith 4822fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 4839566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 4842fd7e33dSBarry Smith row = row - diag; 4852fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 4862fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 4872fd7e33dSBarry Smith } 488fff043a9SJunchao Zhang if (l) { 4899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 4909566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 4919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 492fff043a9SJunchao Zhang } 4932fd7e33dSBarry Smith 4942fd7e33dSBarry Smith /* diagonal part */ 495fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 4969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 4979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row]))); 4989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 499fff043a9SJunchao Zhang } 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* right of diagonal part */ 502fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5049566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 506fff043a9SJunchao Zhang } 5073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5082fd7e33dSBarry Smith } 5092fd7e33dSBarry Smith 510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 511d71ae5a4SJacob Faibussowitsch { 51244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 513071fcb05SBarry Smith PetscScalar value = 0.0; 514d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 515d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 516ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5178a729477SBarry Smith 5180520107fSSatish Balay /* Some Variables required in the macro */ 5194ee7247eSSatish Balay Mat A = aij->A; 5204ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 52157809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 522ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 52330770e4dSSatish Balay Mat B = aij->B; 52430770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 525d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 526ce496241SStefano Zampini MatScalar *aa, *ba; 527fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5288d76821aSHong Zhang PetscInt nonew; 529a77337e4SBarry Smith MatScalar *ap1, *ap2; 5304ee7247eSSatish Balay 5313a40ed3dSBarry Smith PetscFunctionBegin; 5329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5348a729477SBarry Smith for (i = 0; i < m; i++) { 5355ef9f2a5SBarry Smith if (im[i] < 0) continue; 53608401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5374b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5384b0e389bSBarry Smith row = im[i] - rstart; 539fd3458f5SBarry Smith lastcol1 = -1; 5408e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5418e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 542fd3458f5SBarry Smith rmax1 = aimax[row]; 543fd3458f5SBarry Smith nrow1 = ailen[row]; 544fd3458f5SBarry Smith low1 = 0; 545fd3458f5SBarry Smith high1 = nrow1; 546fd3458f5SBarry Smith lastcol2 = -1; 5478e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5488e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 549fd3458f5SBarry Smith rmax2 = bimax[row]; 550d498b1e9SBarry Smith nrow2 = bilen[row]; 551fd3458f5SBarry Smith low2 = 0; 552fd3458f5SBarry Smith high2 = nrow2; 553fd3458f5SBarry Smith 5541eb62cbbSBarry Smith for (j = 0; j < n; j++) { 555071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 556c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 557fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 558fd3458f5SBarry Smith col = in[j] - cstart; 5598d76821aSHong Zhang nonew = a->nonew; 560d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 561f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 562f7d195e4SLawrence Mitchell continue; 563f7d195e4SLawrence Mitchell } else { 564f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 565227d817aSBarry Smith if (mat->was_assembled) { 56648a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 567aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 568eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 569fa46199cSSatish Balay col--; 570b1fc9764SSatish Balay #else 571905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 572b1fc9764SSatish Balay #endif 573fff043a9SJunchao Zhang if (col < 0 && !((Mat_SeqAIJ *)(aij->B->data))->nonew) { /* col < 0 means in[j] is a new col for B */ 5749566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); /* Change aij->B from reduced/local format to expanded/global format */ 5754b0e389bSBarry Smith col = in[j]; 5769bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 577f9508a3cSSatish Balay B = aij->B; 578f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5799371c9d4SSatish Balay bimax = b->imax; 5809371c9d4SSatish Balay bi = b->i; 5819371c9d4SSatish Balay bilen = b->ilen; 5829371c9d4SSatish Balay bj = b->j; 5839371c9d4SSatish Balay ba = b->a; 584d498b1e9SBarry Smith rp2 = bj + bi[row]; 585d498b1e9SBarry Smith ap2 = ba + bi[row]; 586d498b1e9SBarry Smith rmax2 = bimax[row]; 587d498b1e9SBarry Smith nrow2 = bilen[row]; 588d498b1e9SBarry Smith low2 = 0; 589d498b1e9SBarry Smith high2 = nrow2; 590d0f46423SBarry Smith bm = aij->B->rmap->n; 591f9508a3cSSatish Balay ba = b->a; 592d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 5930587a0fcSBarry Smith if (1 == ((Mat_SeqAIJ *)(aij->B->data))->nonew) { 5949566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 59598921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 5960587a0fcSBarry Smith } 597c48de900SBarry Smith } else col = in[j]; 5988d76821aSHong Zhang nonew = b->nonew; 599d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6001eb62cbbSBarry Smith } 6011eb62cbbSBarry Smith } 6025ef9f2a5SBarry Smith } else { 60328b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 60490f02eecSBarry Smith if (!aij->donotstash) { 6055080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 606d36fbae8SSatish Balay if (roworiented) { 6078e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 608d36fbae8SSatish Balay } else { 6098e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6104b0e389bSBarry Smith } 6111eb62cbbSBarry Smith } 6128a729477SBarry Smith } 61390f02eecSBarry Smith } 6145519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6178a729477SBarry Smith } 6188a729477SBarry Smith 6192b08fdbeSandi selinger /* 620904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6212b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 622904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6232b08fdbeSandi selinger */ 624d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 625d71ae5a4SJacob Faibussowitsch { 626904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 627904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6284cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 629904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 630904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 631904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 632904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 633904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6346dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 635904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 636904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 637904d1e70Sandi selinger 638904d1e70Sandi selinger PetscFunctionBegin; 639904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 640904d1e70Sandi selinger for (j = 0; j < am; j++) { 641904d1e70Sandi selinger dnz = onz = 0; 642904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6436dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 644904d1e70Sandi selinger /* If column is in the diagonal */ 645904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 646904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 647904d1e70Sandi selinger dnz++; 648904d1e70Sandi selinger } else { /* off-diagonal entries */ 649904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 650904d1e70Sandi selinger onz++; 651904d1e70Sandi selinger } 652904d1e70Sandi selinger } 653904d1e70Sandi selinger ailen[j] = dnz; 654904d1e70Sandi selinger bilen[j] = onz; 655904d1e70Sandi selinger } 6563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 657904d1e70Sandi selinger } 658904d1e70Sandi selinger 659904d1e70Sandi selinger /* 660904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 661904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6621de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6631de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6641de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 665904d1e70Sandi selinger */ 666d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 667d71ae5a4SJacob Faibussowitsch { 6683a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6693a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6704cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 671e9ede7d0Sandi selinger Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)(aij->A)->data, *aijo = (Mat_SeqAIJ *)(aij->B)->data; 6723a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6733a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6743a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6753a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6763a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6776dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6781de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 679904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 680904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 6813a063d27Sandi selinger 6823a063d27Sandi selinger PetscFunctionBegin; 6833a063d27Sandi selinger /* Iterate over all rows of the matrix */ 6843a063d27Sandi selinger for (j = 0; j < am; j++) { 685904d1e70Sandi selinger dnz_row = onz_row = 0; 686904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 687904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 688e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 689e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 690ae8e66a0Sandi selinger /* If column is in the diagonal */ 6913a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 692904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 693904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 694904d1e70Sandi selinger dnz_row++; 695ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 696904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 697904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 698904d1e70Sandi selinger onz_row++; 6993a063d27Sandi selinger } 7003a063d27Sandi selinger } 701904d1e70Sandi selinger ailen[j] = dnz_row; 702904d1e70Sandi selinger bilen[j] = onz_row; 7033a063d27Sandi selinger } 7043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7053a063d27Sandi selinger } 7063a063d27Sandi selinger 707ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 708d71ae5a4SJacob Faibussowitsch { 709b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 710d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 711d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 712b49de8d1SLois Curfman McInnes 7133a40ed3dSBarry Smith PetscFunctionBegin; 714b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 71554c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 71654c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 71785835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 718b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 719b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 72054c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 72154c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 722b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 723b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7249566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 725fa852ad4SSatish Balay } else { 72648a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 727aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 728eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 729fa46199cSSatish Balay col--; 730b1fc9764SSatish Balay #else 731905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 732b1fc9764SSatish Balay #endif 733e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 73448a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 735b49de8d1SLois Curfman McInnes } 736b49de8d1SLois Curfman McInnes } 737b49de8d1SLois Curfman McInnes } 7383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 739b49de8d1SLois Curfman McInnes } 740bc5ccf88SSatish Balay 741ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 742d71ae5a4SJacob Faibussowitsch { 743bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 744b1d57f15SBarry Smith PetscInt nstash, reallocs; 745bc5ccf88SSatish Balay 746bc5ccf88SSatish Balay PetscFunctionBegin; 7473ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 748bc5ccf88SSatish Balay 7499566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7509566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7519566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 753bc5ccf88SSatish Balay } 754bc5ccf88SSatish Balay 755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 756d71ae5a4SJacob Faibussowitsch { 757bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 758b1d57f15SBarry Smith PetscMPIInt n; 759b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 760e44c0bd4SBarry Smith PetscInt *row, *col; 761ace3abfcSBarry Smith PetscBool other_disassembled; 76287828ca2SBarry Smith PetscScalar *val; 763bc5ccf88SSatish Balay 76491c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7656e111a19SKarl Rupp 766bc5ccf88SSatish Balay PetscFunctionBegin; 7674cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 768a2d1c673SSatish Balay while (1) { 7699566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 770a2d1c673SSatish Balay if (!flg) break; 771a2d1c673SSatish Balay 772bc5ccf88SSatish Balay for (i = 0; i < n;) { 773bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7742205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7752205254eSKarl Rupp if (row[j] != rstart) break; 7762205254eSKarl Rupp } 777bc5ccf88SSatish Balay if (j < n) ncols = j - i; 778bc5ccf88SSatish Balay else ncols = n - i; 779bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7809566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 781bc5ccf88SSatish Balay i = j; 782bc5ccf88SSatish Balay } 783bc5ccf88SSatish Balay } 7849566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 785bc5ccf88SSatish Balay } 7868c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 787c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 7889ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 7899ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 7909566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 7919566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 7929ecce9b1SRichard Tran Mills } 793e2cf4d64SStefano Zampini #endif 7949566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 7959566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 796bc5ccf88SSatish Balay 797bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 798071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 799bc5ccf88SSatish Balay /* 800bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 801bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 802bc5ccf88SSatish Balay */ 803bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 8045f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 80535cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 8069566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 807ad59fb31SSatish Balay } 808ad59fb31SSatish Balay } 80948a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8109566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8118c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 812c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 813e2cf4d64SStefano Zampini #endif 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 816bc5ccf88SSatish Balay 8179566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8182205254eSKarl Rupp 819f4259b30SLisandro Dalcin aij->rowvalues = NULL; 820a30b2313SHong Zhang 8219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 822e56f5c9eSBarry Smith 8234f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8244f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)(aij->A->data))->nonew) { 825e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 8261c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 827e56f5c9eSBarry Smith } 8288c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 829c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 830e2cf4d64SStefano Zampini #endif 8313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 832bc5ccf88SSatish Balay } 833bc5ccf88SSatish Balay 834ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 835d71ae5a4SJacob Faibussowitsch { 83644a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8373a40ed3dSBarry Smith 8383a40ed3dSBarry Smith PetscFunctionBegin; 8399566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8409566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8421eb62cbbSBarry Smith } 8431eb62cbbSBarry Smith 844ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 845d71ae5a4SJacob Faibussowitsch { 8461b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 847a92ad425SStefano Zampini PetscObjectState sA, sB; 8481b1dd7adSMatthew G. Knepley PetscInt *lrows; 8496e520ac8SStefano Zampini PetscInt r, len; 850a92ad425SStefano Zampini PetscBool cong, lch, gch; 8511eb62cbbSBarry Smith 8523a40ed3dSBarry Smith PetscFunctionBegin; 8536e520ac8SStefano Zampini /* get locally owned rows */ 8549566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8559566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 85697b48c8fSBarry Smith /* fix right hand side if needed */ 85797b48c8fSBarry Smith if (x && b) { 8581b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8591b1dd7adSMatthew G. Knepley PetscScalar *bb; 8601b1dd7adSMatthew G. Knepley 86128b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8629566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8639566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8641b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8669566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 86797b48c8fSBarry Smith } 868a92ad425SStefano Zampini 869a92ad425SStefano Zampini sA = mat->A->nonzerostate; 870a92ad425SStefano Zampini sB = mat->B->nonzerostate; 871a92ad425SStefano Zampini 872a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8739566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8749566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 875a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 876a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 877a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 878a92ad425SStefano Zampini PetscInt nnwA, nnwB; 879a92ad425SStefano Zampini PetscBool nnzA, nnzB; 880a92ad425SStefano Zampini 881a92ad425SStefano Zampini nnwA = aijA->nonew; 882a92ad425SStefano Zampini nnwB = aijB->nonew; 883a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 884a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 885a92ad425SStefano Zampini if (!nnzA) { 8869566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 887a92ad425SStefano Zampini aijA->nonew = 0; 888a92ad425SStefano Zampini } 889a92ad425SStefano Zampini if (!nnzB) { 8909566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 891a92ad425SStefano Zampini aijB->nonew = 0; 892a92ad425SStefano Zampini } 893a92ad425SStefano Zampini /* Must zero here before the next loop */ 8949566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 8959566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 8961b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 8971b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 898a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 8999566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 900e2d53e46SBarry Smith } 901a92ad425SStefano Zampini aijA->nonew = nnwA; 902a92ad425SStefano Zampini aijB->nonew = nnwB; 9036eb55b6aSBarry Smith } else { 9049566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9059566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9066eb55b6aSBarry Smith } 9079566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9089566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9099566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9104f9cfa9eSBarry Smith 911a92ad425SStefano Zampini /* reduce nonzerostate */ 912a92ad425SStefano Zampini lch = (PetscBool)(sA != mat->A->nonzerostate || sB != mat->B->nonzerostate); 9131c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lch, &gch, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)A))); 914a92ad425SStefano Zampini if (gch) A->nonzerostate++; 9153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9161eb62cbbSBarry Smith } 9171eb62cbbSBarry Smith 918ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 919d71ae5a4SJacob Faibussowitsch { 9209c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9215ba17502SJed Brown PetscMPIInt n = A->rmap->n; 922131c27b5Sprj- PetscInt i, j, r, m, len = 0; 92354bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 924131c27b5Sprj- PetscMPIInt p = 0; 92554bd4135SMatthew G. Knepley PetscSFNode *rrows; 92654bd4135SMatthew G. Knepley PetscSF sf; 9279c7c4993SBarry Smith const PetscScalar *xx; 928fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 929564f14d6SBarry Smith Vec xmask, lmask; 930564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 931564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 932564f14d6SBarry Smith PetscScalar *aa; 9339c7c4993SBarry Smith 9349c7c4993SBarry Smith PetscFunctionBegin; 93554bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 93754bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 93954bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 94054bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 941aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9425ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9439566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9445ba17502SJed Brown } 94554bd4135SMatthew G. Knepley rrows[r].rank = p; 94654bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9479c7c4993SBarry Smith } 9489566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9499566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 95054bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9519566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9529566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9539566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 95454bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9559371c9d4SSatish Balay for (r = 0; r < n; ++r) 9569371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 957564f14d6SBarry Smith /* zero diagonal part of matrix */ 9589566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9594cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9609566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9619566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9629566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 96354bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9649566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9659566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9669566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9679566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 968a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 969a92ad425SStefano Zampini PetscBool cong; 970a92ad425SStefano Zampini 9719566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 97228b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9739566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9749566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9759566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9769566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 977377aa5a1SBarry Smith } 9789566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9794cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 981564f14d6SBarry Smith ii = aij->i; 9828e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 983564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 984564f14d6SBarry Smith if (aij->compressedrow.use) { 985564f14d6SBarry Smith m = aij->compressedrow.nrows; 986564f14d6SBarry Smith ii = aij->compressedrow.i; 987564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 988564f14d6SBarry Smith for (i = 0; i < m; i++) { 989564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 990564f14d6SBarry Smith aj = aij->j + ii[i]; 991fff043a9SJunchao Zhang aa = aij_a + ii[i]; 992564f14d6SBarry Smith 993564f14d6SBarry Smith for (j = 0; j < n; j++) { 99425266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 995377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 996564f14d6SBarry Smith *aa = 0.0; 997564f14d6SBarry Smith } 998564f14d6SBarry Smith aa++; 999564f14d6SBarry Smith aj++; 1000564f14d6SBarry Smith } 1001564f14d6SBarry Smith ridx++; 1002564f14d6SBarry Smith } 1003564f14d6SBarry Smith } else { /* do not use compressed row format */ 1004564f14d6SBarry Smith m = l->B->rmap->n; 1005564f14d6SBarry Smith for (i = 0; i < m; i++) { 1006564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1007564f14d6SBarry Smith aj = aij->j + ii[i]; 1008fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1009564f14d6SBarry Smith for (j = 0; j < n; j++) { 101025266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1011377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1012564f14d6SBarry Smith *aa = 0.0; 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith aa++; 1015564f14d6SBarry Smith aj++; 1016564f14d6SBarry Smith } 1017564f14d6SBarry Smith } 1018564f14d6SBarry Smith } 1019a92ad425SStefano Zampini if (x && b) { 10209566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10219566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1022377aa5a1SBarry Smith } 10239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10249566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10259566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10269566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10274f9cfa9eSBarry Smith 10284f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 10294f9cfa9eSBarry Smith if (!((Mat_SeqAIJ *)(l->A->data))->keepnonzeropattern) { 10304f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 10311c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10324f9cfa9eSBarry Smith } 10333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10349c7c4993SBarry Smith } 10359c7c4993SBarry Smith 1036ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1037d71ae5a4SJacob Faibussowitsch { 1038416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1039b1d57f15SBarry Smith PetscInt nt; 104019b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1041416022c9SBarry Smith 10423a40ed3dSBarry Smith PetscFunctionBegin; 10439566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 104408401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10459566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1046296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10479566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1048296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10501eb62cbbSBarry Smith } 10511eb62cbbSBarry Smith 1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1053d71ae5a4SJacob Faibussowitsch { 1054bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1055bd0c2dcbSBarry Smith 1056bd0c2dcbSBarry Smith PetscFunctionBegin; 10579566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1059bd0c2dcbSBarry Smith } 1060bd0c2dcbSBarry Smith 1061ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1062d71ae5a4SJacob Faibussowitsch { 1063416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 106401ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10653a40ed3dSBarry Smith 10663a40ed3dSBarry Smith PetscFunctionBegin; 10679566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10689566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10699566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10709566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1072da3a660dSBarry Smith } 1073da3a660dSBarry Smith 1074ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1075d71ae5a4SJacob Faibussowitsch { 1076416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1077da3a660dSBarry Smith 10783a40ed3dSBarry Smith PetscFunctionBegin; 1079da3a660dSBarry Smith /* do nondiagonal part */ 10809566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1081da3a660dSBarry Smith /* do local part */ 10829566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10839613dc34SJunchao Zhang /* add partial results together */ 10849566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10859566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1087da3a660dSBarry Smith } 1088da3a660dSBarry Smith 1089ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1090d71ae5a4SJacob Faibussowitsch { 10914f423910Svictorle MPI_Comm comm; 1092ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1093ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1094cd0d46ebSvictorle IS Me, Notme; 1095b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 109654d735aeSStefano Zampini PetscBool lf; 1097b1d57f15SBarry Smith PetscMPIInt size; 1098cd0d46ebSvictorle 1099cd0d46ebSvictorle PetscFunctionBegin; 110042e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 11019566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 11021c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11033ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11063ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 110742e5f5b4Svictorle 11087dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11099566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11109566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1112cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1113cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11149566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11159566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11169566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 111766501d38Svictorle Aoff = Aoffs[0]; 11189566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 111966501d38Svictorle Boff = Boffs[0]; 11209566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11219566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11229566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11239566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11249566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11259566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1127cd0d46ebSvictorle } 1128cd0d46ebSvictorle 1129ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsSymmetric_MPIAIJ(Mat A, PetscReal tol, PetscBool *f) 1130d71ae5a4SJacob Faibussowitsch { 1131a3bbdb47SHong Zhang PetscFunctionBegin; 11329566063dSJacob Faibussowitsch PetscCall(MatIsTranspose_MPIAIJ(A, A, tol, f)); 11333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1134a3bbdb47SHong Zhang } 1135a3bbdb47SHong Zhang 1136ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1137d71ae5a4SJacob Faibussowitsch { 1138416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1139da3a660dSBarry Smith 11403a40ed3dSBarry Smith PetscFunctionBegin; 1141da3a660dSBarry Smith /* do nondiagonal part */ 11429566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1143da3a660dSBarry Smith /* do local part */ 11449566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11459613dc34SJunchao Zhang /* add partial results together */ 11469566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11479566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1149da3a660dSBarry Smith } 1150da3a660dSBarry Smith 11511eb62cbbSBarry Smith /* 11521eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11531eb62cbbSBarry Smith diagonal block 11541eb62cbbSBarry Smith */ 1155ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1156d71ae5a4SJacob Faibussowitsch { 1157416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11583a40ed3dSBarry Smith 11593a40ed3dSBarry Smith PetscFunctionBegin; 116008401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1161aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11629566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11641eb62cbbSBarry Smith } 11651eb62cbbSBarry Smith 1166ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1167d71ae5a4SJacob Faibussowitsch { 1168052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11693a40ed3dSBarry Smith 11703a40ed3dSBarry Smith PetscFunctionBegin; 11719566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11729566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1174052efed2SBarry Smith } 1175052efed2SBarry Smith 1176ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1177d71ae5a4SJacob Faibussowitsch { 11788e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11798e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11808e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11813ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11822e5835c6SStefano Zampini const PetscScalar *aa, *ba; 118317a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 118417a3732bSBarry Smith PetscInt64 nz, hnz; 11853ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11863ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11873ea6fe3dSLisandro Dalcin PetscScalar *matvals; 118817a3732bSBarry Smith PetscMPIInt rank; 11898e2fed03SBarry Smith 11908e2fed03SBarry Smith PetscFunctionBegin; 11919566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11923ea6fe3dSLisandro Dalcin 11933ea6fe3dSLisandro Dalcin M = mat->rmap->N; 11943ea6fe3dSLisandro Dalcin N = mat->cmap->N; 11953ea6fe3dSLisandro Dalcin m = mat->rmap->n; 11963ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 11973ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 11988e2fed03SBarry Smith nz = A->nz + B->nz; 11993ea6fe3dSLisandro Dalcin 12003ea6fe3dSLisandro Dalcin /* write matrix header */ 12010700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 12029371c9d4SSatish Balay header[1] = M; 12039371c9d4SSatish Balay header[2] = N; 120417a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 120517a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 120638b83642SBarry Smith if (rank == 0) { 120738b83642SBarry Smith if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT; 120838b83642SBarry Smith else header[3] = (PetscInt)hnz; 120938b83642SBarry Smith } 12109566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12118e2fed03SBarry Smith 12123ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12143ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12159566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12169566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12178e2fed03SBarry Smith 12183ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12203ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12213ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12223ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12233ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12248e2fed03SBarry Smith } 12259371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12269371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12278e2fed03SBarry Smith } 122817a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12299566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12309566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12318e2fed03SBarry Smith 12323ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12363ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12373ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12383ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12392e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12408e2fed03SBarry Smith } 12419371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12429371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12438e2fed03SBarry Smith } 12449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 124617a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12479566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12489566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12498e2fed03SBarry Smith 12503ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12519566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12538e2fed03SBarry Smith } 12548e2fed03SBarry Smith 12559804daf3SBarry Smith #include <petscdraw.h> 1256ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1257d71ae5a4SJacob Faibussowitsch { 125844a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 125932dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1260ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1261b0a32e0cSBarry Smith PetscViewer sviewer; 1262f3ef73ceSBarry Smith PetscViewerFormat format; 1263416022c9SBarry Smith 12643a40ed3dSBarry Smith PetscFunctionBegin; 12659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12669566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12679566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 126832077d6dSBarry Smith if (iascii) { 12699566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1270ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 1271ef5fdb51SBarry Smith PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)(aij->A->data))->nz + ((Mat_SeqAIJ *)(aij->B->data))->nz; 12729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1274ef5fdb51SBarry Smith for (i = 0; i < (PetscInt)size; i++) { 1275ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1276ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1277ef5fdb51SBarry Smith navg += nz[i]; 1278ef5fdb51SBarry Smith } 12799566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1280ef5fdb51SBarry Smith navg = navg / size; 12819566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1283ef5fdb51SBarry Smith } 12849566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1285456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12864e220ebcSLois Curfman McInnes MatInfo info; 12876335e310SSatish Balay PetscInt *inodes = NULL; 1288923f20ffSKris Buschelman 12899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12909566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12919566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1293923f20ffSKris Buschelman if (!inodes) { 12949371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12959371c9d4SSatish Balay (double)info.memory)); 12966831982aSBarry Smith } else { 12979371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12989371c9d4SSatish Balay (double)info.memory)); 12996831982aSBarry Smith } 13009566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 13019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13029566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13049566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13059566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13079566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1309fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1310923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13119566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1312923f20ffSKris Buschelman if (inodes) { 13139566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1314d38fa0fbSBarry Smith } else { 13159566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1316d38fa0fbSBarry Smith } 13173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13184aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132008480c60SBarry Smith } 13218e2fed03SBarry Smith } else if (isbinary) { 13228e2fed03SBarry Smith if (size == 1) { 13239566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13249566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13258e2fed03SBarry Smith } else { 13269566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13278e2fed03SBarry Smith } 13283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132971e56450SStefano Zampini } else if (iascii && size == 1) { 13309566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13319566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13330f5bd95cSBarry Smith } else if (isdraw) { 1334b0a32e0cSBarry Smith PetscDraw draw; 1335ace3abfcSBarry Smith PetscBool isnull; 13369566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13379566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13383ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 133919bcc07fSBarry Smith } 134019bcc07fSBarry Smith 134171e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 134271e56450SStefano Zampini Mat A = NULL, Av; 134371e56450SStefano Zampini IS isrow, iscol; 13442ee70a88SLois Curfman McInnes 13459566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13469566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13479566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13489566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 134971e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 135071e56450SStefano Zampini /* 135171e56450SStefano Zampini Mat *AA, A = NULL, Av; 135271e56450SStefano Zampini IS isrow,iscol; 135371e56450SStefano Zampini 13549566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13559566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13569566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1357dd400576SPatrick Sanan if (rank == 0) { 13589566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 135971e56450SStefano Zampini A = AA[0]; 136071e56450SStefano Zampini Av = AA[0]; 136195373324SBarry Smith } 13629566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136371e56450SStefano Zampini */ 13649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13659566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 136655843e3eSBarry Smith /* 136755843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1368b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 136955843e3eSBarry Smith */ 13709566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1371dd400576SPatrick Sanan if (rank == 0) { 137248a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13739566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 137495373324SBarry Smith } 13759566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13769566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 137795373324SBarry Smith } 13783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13791eb62cbbSBarry Smith } 13801eb62cbbSBarry Smith 1381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1382d71ae5a4SJacob Faibussowitsch { 1383ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1384416022c9SBarry Smith 13853a40ed3dSBarry Smith PetscFunctionBegin; 13869566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13879566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13889566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13899566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 139048a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1392416022c9SBarry Smith } 1393416022c9SBarry Smith 1394ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1395d71ae5a4SJacob Faibussowitsch { 139644a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1397f4259b30SLisandro Dalcin Vec bb1 = NULL; 1398ace3abfcSBarry Smith PetscBool hasop; 13998a729477SBarry Smith 14003a40ed3dSBarry Smith PetscFunctionBegin; 1401a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 14029566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1404a2b30743SBarry Smith } 1405a2b30743SBarry Smith 140648a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14074e980039SJed Brown 1408c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1409da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14109566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14112798e883SHong Zhang its--; 1412da3a660dSBarry Smith } 14132798e883SHong Zhang 14142798e883SHong Zhang while (its--) { 14159566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14169566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14172798e883SHong Zhang 1418c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14199566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14209566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14212798e883SHong Zhang 1422c14dc6b6SHong Zhang /* local sweep */ 14239566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14242798e883SHong Zhang } 14253a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1426da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14279566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14282798e883SHong Zhang its--; 1429da3a660dSBarry Smith } 14302798e883SHong Zhang while (its--) { 14319566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14329566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14332798e883SHong Zhang 1434c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14359566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14369566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1437c14dc6b6SHong Zhang 1438c14dc6b6SHong Zhang /* local sweep */ 14399566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14402798e883SHong Zhang } 14413a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1442da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14439566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14442798e883SHong Zhang its--; 1445da3a660dSBarry Smith } 14462798e883SHong Zhang while (its--) { 14479566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14489566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14492798e883SHong Zhang 1450c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14519566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14529566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14532798e883SHong Zhang 1454c14dc6b6SHong Zhang /* local sweep */ 14559566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14562798e883SHong Zhang } 1457a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1458a7420bb7SBarry Smith Vec xx1; 1459a7420bb7SBarry Smith 14609566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14619566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1462a7420bb7SBarry Smith 14639566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14649566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1465a7420bb7SBarry Smith if (!mat->diag) { 14669566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14679566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1468a7420bb7SBarry Smith } 14699566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1470bd0c2dcbSBarry Smith if (hasop) { 14719566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1472bd0c2dcbSBarry Smith } else { 14739566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1474bd0c2dcbSBarry Smith } 14759566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1476887ee2caSBarry Smith 14779566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1478a7420bb7SBarry Smith 1479a7420bb7SBarry Smith /* local sweep */ 14809566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14819566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1483ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1484c14dc6b6SHong Zhang 14859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1486a0808db4SHong Zhang 14877b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14898a729477SBarry Smith } 1490a66be287SLois Curfman McInnes 1491ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1492d71ae5a4SJacob Faibussowitsch { 149372e6a0cfSJed Brown Mat aA, aB, Aperm; 149472e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 149572e6a0cfSJed Brown PetscScalar *aa, *ba; 149672e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 149772e6a0cfSJed Brown PetscSF rowsf, sf; 14980298fd71SBarry Smith IS parcolp = NULL; 149972e6a0cfSJed Brown PetscBool done; 150042e855d1Svictor 150142e855d1Svictor PetscFunctionBegin; 15029566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15039566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15049566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15059566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 150672e6a0cfSJed Brown 150772e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15089566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15099566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15109566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 151172e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15129566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15139566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 151472e6a0cfSJed Brown 151572e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15169566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15179566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15189566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 151972e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15209566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15219566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152372e6a0cfSJed Brown 15249566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15259566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15269566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 152772e6a0cfSJed Brown 152872e6a0cfSJed Brown /* Find out where my gcols should go */ 15299566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15319566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15329566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15339566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15349566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15359566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15369566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 153772e6a0cfSJed Brown 15389566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15399566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15409566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 154172e6a0cfSJed Brown for (i = 0; i < m; i++) { 1542131c27b5Sprj- PetscInt row = rdest[i]; 1543131c27b5Sprj- PetscMPIInt rowner; 15449566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 154572e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1546131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1547131c27b5Sprj- PetscMPIInt cowner; 15489566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 154972e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155072e6a0cfSJed Brown else onnz[i]++; 155172e6a0cfSJed Brown } 155272e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1553131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1554131c27b5Sprj- PetscMPIInt cowner; 15559566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 155672e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155772e6a0cfSJed Brown else onnz[i]++; 155872e6a0cfSJed Brown } 155972e6a0cfSJed Brown } 15609566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15619566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15639566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15649566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 156572e6a0cfSJed Brown 15669566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 156972e6a0cfSJed Brown for (i = 0; i < m; i++) { 157072e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1571970468b0SJed Brown PetscInt j0, rowlen; 157272e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1573970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1574970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15759566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1576970468b0SJed Brown } 157772e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1578970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1579970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15809566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1581970468b0SJed Brown } 158272e6a0cfSJed Brown } 15839566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15849566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15859566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15869566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15899566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15909566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15919566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15929566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159372e6a0cfSJed Brown *B = Aperm; 15943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 159542e855d1Svictor } 159642e855d1Svictor 1597ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1598d71ae5a4SJacob Faibussowitsch { 1599c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1600c5e4d11fSDmitry Karpeev 1601c5e4d11fSDmitry Karpeev PetscFunctionBegin; 16029566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1603c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1605c5e4d11fSDmitry Karpeev } 1606c5e4d11fSDmitry Karpeev 1607ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1608d71ae5a4SJacob Faibussowitsch { 1609a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1610a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16113966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1612a66be287SLois Curfman McInnes 16133a40ed3dSBarry Smith PetscFunctionBegin; 16144e220ebcSLois Curfman McInnes info->block_size = 1.0; 16159566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16162205254eSKarl Rupp 16179371c9d4SSatish Balay isend[0] = info->nz_used; 16189371c9d4SSatish Balay isend[1] = info->nz_allocated; 16199371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16209371c9d4SSatish Balay isend[3] = info->memory; 16219371c9d4SSatish Balay isend[4] = info->mallocs; 16222205254eSKarl Rupp 16239566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16242205254eSKarl Rupp 16259371c9d4SSatish Balay isend[0] += info->nz_used; 16269371c9d4SSatish Balay isend[1] += info->nz_allocated; 16279371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16289371c9d4SSatish Balay isend[3] += info->memory; 16299371c9d4SSatish Balay isend[4] += info->mallocs; 1630a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16314e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16324e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16334e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16344e220ebcSLois Curfman McInnes info->memory = isend[3]; 16354e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1636a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 16371c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16382205254eSKarl Rupp 16394e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16404e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16414e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16424e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16434e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1644a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 16451c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16462205254eSKarl Rupp 16474e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16484e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16494e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16504e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16514e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1652a66be287SLois Curfman McInnes } 16534e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16544e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16554e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1657a66be287SLois Curfman McInnes } 1658a66be287SLois Curfman McInnes 1659d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1660d71ae5a4SJacob Faibussowitsch { 1661c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1662c74985f6SBarry Smith 16633a40ed3dSBarry Smith PetscFunctionBegin; 166412c028f9SKris Buschelman switch (op) { 1665512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 166612c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 166728b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1668a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 166912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16700ad02fcaSStefano Zampini case MAT_USE_INODES: 167112c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16721a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1673fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16749566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16759566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 167612c028f9SKris Buschelman break; 167712c028f9SKris Buschelman case MAT_ROW_ORIENTED: 167843674050SBarry Smith MatCheckPreallocated(A, 1); 16794e0d8c25SBarry Smith a->roworiented = flg; 16802205254eSKarl Rupp 16819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16829566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168312c028f9SKris Buschelman break; 16848c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1685d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1686d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1687d71ae5a4SJacob Faibussowitsch break; 1688d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1689d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1690d71ae5a4SJacob Faibussowitsch break; 1691c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1692ffa07934SHong Zhang case MAT_SPD: 169377e54ba9SKris Buschelman case MAT_SYMMETRIC: 169477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1695bf108f30SBarry Smith case MAT_HERMITIAN: 1696bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1697b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1698b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1699b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 170077e54ba9SKris Buschelman break; 1701d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1702d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1703d71ae5a4SJacob Faibussowitsch break; 1704957cac9fSHong Zhang case MAT_STRUCTURE_ONLY: 1705957cac9fSHong Zhang /* The option is handled directly by MatSetOption() */ 1706957cac9fSHong Zhang break; 1707d71ae5a4SJacob Faibussowitsch default: 1708d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 17093a40ed3dSBarry Smith } 17103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1711c74985f6SBarry Smith } 1712c74985f6SBarry Smith 1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1714d71ae5a4SJacob Faibussowitsch { 1715154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 171687828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1717d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1718d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1719b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 172039e00950SLois Curfman McInnes 17213a40ed3dSBarry Smith PetscFunctionBegin; 172228b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17237a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17247a0afa10SBarry Smith 172570f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17267a0afa10SBarry Smith /* 17277a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17287a0afa10SBarry Smith */ 17297a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1730b1d57f15SBarry Smith PetscInt max = 1, tmp; 1731d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17327a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17332205254eSKarl Rupp if (max < tmp) max = tmp; 17347a0afa10SBarry Smith } 17359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17367a0afa10SBarry Smith } 17377a0afa10SBarry Smith 1738aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1739abc0e9e4SLois Curfman McInnes lrow = row - rstart; 174039e00950SLois Curfman McInnes 17419371c9d4SSatish Balay pvA = &vworkA; 17429371c9d4SSatish Balay pcA = &cworkA; 17439371c9d4SSatish Balay pvB = &vworkB; 17449371c9d4SSatish Balay pcB = &cworkB; 17459371c9d4SSatish Balay if (!v) { 17469371c9d4SSatish Balay pvA = NULL; 17479371c9d4SSatish Balay pvB = NULL; 17489371c9d4SSatish Balay } 17499371c9d4SSatish Balay if (!idx) { 17509371c9d4SSatish Balay pcA = NULL; 17519371c9d4SSatish Balay if (!v) pcB = NULL; 17529371c9d4SSatish Balay } 17539566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17549566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1755154123eaSLois Curfman McInnes nztot = nzA + nzB; 1756154123eaSLois Curfman McInnes 175770f0671dSBarry Smith cmap = mat->garray; 1758154123eaSLois Curfman McInnes if (v || idx) { 1759154123eaSLois Curfman McInnes if (nztot) { 1760154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1761b1d57f15SBarry Smith PetscInt imark = -1; 1762154123eaSLois Curfman McInnes if (v) { 176370f0671dSBarry Smith *v = v_p = mat->rowvalues; 176439e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 176570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1766154123eaSLois Curfman McInnes else break; 1767154123eaSLois Curfman McInnes } 1768154123eaSLois Curfman McInnes imark = i; 176970f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 177070f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1771154123eaSLois Curfman McInnes } 1772154123eaSLois Curfman McInnes if (idx) { 177370f0671dSBarry Smith *idx = idx_p = mat->rowindices; 177470f0671dSBarry Smith if (imark > -1) { 1775ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 177670f0671dSBarry Smith } else { 1777154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 177870f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1779154123eaSLois Curfman McInnes else break; 1780154123eaSLois Curfman McInnes } 1781154123eaSLois Curfman McInnes imark = i; 178270f0671dSBarry Smith } 178370f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 178470f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 178539e00950SLois Curfman McInnes } 17863f97c4b0SBarry Smith } else { 1787f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1788f4259b30SLisandro Dalcin if (v) *v = NULL; 17891ca473b0SSatish Balay } 1790154123eaSLois Curfman McInnes } 179139e00950SLois Curfman McInnes *nz = nztot; 17929566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17939566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179539e00950SLois Curfman McInnes } 179639e00950SLois Curfman McInnes 1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1798d71ae5a4SJacob Faibussowitsch { 17997a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 18003a40ed3dSBarry Smith 18013a40ed3dSBarry Smith PetscFunctionBegin; 180228b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18037a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180539e00950SLois Curfman McInnes } 180639e00950SLois Curfman McInnes 1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1808d71ae5a4SJacob Faibussowitsch { 1809855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1810ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1811d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1812329f5518SBarry Smith PetscReal sum = 0.0; 1813fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 181404ca555eSLois Curfman McInnes 18153a40ed3dSBarry Smith PetscFunctionBegin; 181617699dbbSLois Curfman McInnes if (aij->size == 1) { 18179566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 181837fa93a5SLois Curfman McInnes } else { 18199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 182104ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1822fff043a9SJunchao Zhang v = amata; 182304ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18249371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18259371c9d4SSatish Balay v++; 182604ca555eSLois Curfman McInnes } 1827fff043a9SJunchao Zhang v = bmata; 182804ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18299371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18309371c9d4SSatish Balay v++; 183104ca555eSLois Curfman McInnes } 18321c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18338f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18349566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18353a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1836329f5518SBarry Smith PetscReal *tmp, *tmp2; 1837b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18389566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 18399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2)); 184004ca555eSLois Curfman McInnes *norm = 0.0; 18419371c9d4SSatish Balay v = amata; 18429371c9d4SSatish Balay jj = amat->j; 184304ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18449371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18459371c9d4SSatish Balay v++; 184604ca555eSLois Curfman McInnes } 18479371c9d4SSatish Balay v = bmata; 18489371c9d4SSatish Balay jj = bmat->j; 184904ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18509371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18519371c9d4SSatish Balay v++; 185204ca555eSLois Curfman McInnes } 18531c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1854d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 185504ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 185604ca555eSLois Curfman McInnes } 18579566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18589566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 18599566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18603a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1861329f5518SBarry Smith PetscReal ntemp = 0.0; 1862d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18638e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186404ca555eSLois Curfman McInnes sum = 0.0; 186504ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18669371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18679371c9d4SSatish Balay v++; 186804ca555eSLois Curfman McInnes } 18698e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 187004ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18719371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18729371c9d4SSatish Balay v++; 187304ca555eSLois Curfman McInnes } 1874515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187504ca555eSLois Curfman McInnes } 18761c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18779566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1878ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 188137fa93a5SLois Curfman McInnes } 18823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1883855ac2c5SLois Curfman McInnes } 1884855ac2c5SLois Curfman McInnes 1885ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1886d71ae5a4SJacob Faibussowitsch { 1887a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1888a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1889071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1890071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1891a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1892ce496241SStefano Zampini const MatScalar *pbv, *bv; 1893b7c46309SBarry Smith 18943a40ed3dSBarry Smith PetscFunctionBegin; 18957fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18969371c9d4SSatish Balay ma = A->rmap->n; 18979371c9d4SSatish Balay na = A->cmap->n; 18989371c9d4SSatish Balay mb = a->B->rmap->n; 18999371c9d4SSatish Balay nb = a->B->cmap->n; 19009371c9d4SSatish Balay ai = Aloc->i; 19019371c9d4SSatish Balay aj = Aloc->j; 19029371c9d4SSatish Balay bi = Bloc->i; 19039371c9d4SSatish Balay bj = Bloc->j; 1904fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190580bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 190680bcc5a1SJed Brown PetscSFNode *oloc; 1907713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190880bcc5a1SJed Brown 19099566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 191080bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19119566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1912cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191380bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19149566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191580bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 191680bcc5a1SJed Brown /* map those to global */ 19179566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19189566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19199566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19209566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 192157168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 192257168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19239566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1924d4bb536fSBarry Smith 19259566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 19279566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 19289566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19299566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19309566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1931fc4dec0aSBarry Smith } else { 1932fc4dec0aSBarry Smith B = *matout; 19339566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1934fc4dec0aSBarry Smith } 1935b7c46309SBarry Smith 1936f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1937a8661f62Sandi selinger A_diag = a->A; 1938a8661f62Sandi selinger B_diag = &b->A; 1939a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1940a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1941a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1942a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1943f79cb1a0Sandi selinger 1944f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1945ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1946f79cb1a0Sandi selinger 19474cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1948a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19497fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19509566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1951f79cb1a0Sandi selinger 1952b7c46309SBarry Smith /* copy over the B part */ 19539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1955ce496241SStefano Zampini pbv = bv; 1956d0f46423SBarry Smith row = A->rmap->rstart; 19572205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195861a2fbbaSHong Zhang cols_tmp = cols; 1959da668accSHong Zhang for (i = 0; i < mb; i++) { 1960da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19619566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19622205254eSKarl Rupp row++; 1963720a2405SPierre Jolivet if (pbv) pbv += ncol; 1964720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1965b7c46309SBarry Smith } 19669566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1968fc73b1b3SBarry Smith 19699566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19709566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1971cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19720de55854SLois Curfman McInnes *matout = B; 19730de55854SLois Curfman McInnes } else { 19749566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19750de55854SLois Curfman McInnes } 19763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1977b7c46309SBarry Smith } 1978b7c46309SBarry Smith 1979ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1980d71ae5a4SJacob Faibussowitsch { 19814b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19824b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1983b1d57f15SBarry Smith PetscInt s1, s2, s3; 1984a008b906SSatish Balay 19853a40ed3dSBarry Smith PetscFunctionBegin; 19869566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19874b967eb1SSatish Balay if (rr) { 19889566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198908401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19904b967eb1SSatish Balay /* Overlap communication with computation. */ 19919566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1992a008b906SSatish Balay } 19934b967eb1SSatish Balay if (ll) { 19949566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199508401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1996dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19974b967eb1SSatish Balay } 19984b967eb1SSatish Balay /* scale the diagonal block */ 1999dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 20004b967eb1SSatish Balay 20014b967eb1SSatish Balay if (rr) { 20024b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20039566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2004dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20054b967eb1SSatish Balay } 20063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2007a008b906SSatish Balay } 2008a008b906SSatish Balay 2009ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2010d71ae5a4SJacob Faibussowitsch { 2011bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20123a40ed3dSBarry Smith 20133a40ed3dSBarry Smith PetscFunctionBegin; 20149566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2016bb5a7306SBarry Smith } 2017bb5a7306SBarry Smith 2018ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2019d71ae5a4SJacob Faibussowitsch { 2020d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2021d4bb536fSBarry Smith Mat a, b, c, d; 2022ace3abfcSBarry Smith PetscBool flg; 2023d4bb536fSBarry Smith 20243a40ed3dSBarry Smith PetscFunctionBegin; 20259371c9d4SSatish Balay a = matA->A; 20269371c9d4SSatish Balay b = matA->B; 20279371c9d4SSatish Balay c = matB->A; 20289371c9d4SSatish Balay d = matB->B; 2029d4bb536fSBarry Smith 20309566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 203148a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 20321c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2034d4bb536fSBarry Smith } 2035d4bb536fSBarry Smith 2036ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2037d71ae5a4SJacob Faibussowitsch { 2038cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2039cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2040cb5b572fSBarry Smith 2041cb5b572fSBarry Smith PetscFunctionBegin; 204233f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204333f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2044cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2045cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2046cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2047cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2048cb5b572fSBarry Smith then copying the submatrices */ 20499566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2050cb5b572fSBarry Smith } else { 20519566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20529566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2053cb5b572fSBarry Smith } 20549566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2056cb5b572fSBarry Smith } 2057cb5b572fSBarry Smith 2058001ddc4fSHong Zhang /* 2059001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2060001ddc4fSHong Zhang have different nonzero structure. 2061001ddc4fSHong Zhang */ 2062d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2063d71ae5a4SJacob Faibussowitsch { 2064001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206595b7e79eSJed Brown 206695b7e79eSJed Brown PetscFunctionBegin; 206795b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206895b7e79eSJed Brown for (i = 0; i < m; i++) { 20698e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2070001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2071001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 207295b7e79eSJed Brown nnz[i] = 0; 207395b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2074001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2075001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 207695b7e79eSJed Brown nnz[i]++; 207795b7e79eSJed Brown } 207895b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207995b7e79eSJed Brown } 20803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208195b7e79eSJed Brown } 208295b7e79eSJed Brown 2083001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2084d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2085d71ae5a4SJacob Faibussowitsch { 2086001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2087001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2088001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2089001ddc4fSHong Zhang 2090001ddc4fSHong Zhang PetscFunctionBegin; 20919566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2093001ddc4fSHong Zhang } 2094001ddc4fSHong Zhang 2095ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2096d71ae5a4SJacob Faibussowitsch { 2097ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2098ac90fabeSBarry Smith 2099ac90fabeSBarry Smith PetscFunctionBegin; 2100ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 21019566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 21029566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2103ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21049566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2105ac90fabeSBarry Smith } else { 21069f5f6813SShri Abhyankar Mat B; 21079f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2108d9d719b4SStefano Zampini 21099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21119566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21129566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21139566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21149566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21159566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21169566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21179566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21189566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21199566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21209566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21219566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2122ac90fabeSBarry Smith } 21233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2124ac90fabeSBarry Smith } 2125ac90fabeSBarry Smith 21262726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2127354c94deSBarry Smith 2128ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2129d71ae5a4SJacob Faibussowitsch { 21305f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21315f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2132354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2133354c94deSBarry Smith 21349566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21359566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21365f80ce2aSJacob Faibussowitsch } 21373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2138354c94deSBarry Smith } 2139354c94deSBarry Smith 2140ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2141d71ae5a4SJacob Faibussowitsch { 214299cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214399cafbc1SBarry Smith 214499cafbc1SBarry Smith PetscFunctionBegin; 21459566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21469566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214899cafbc1SBarry Smith } 214999cafbc1SBarry Smith 2150ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2151d71ae5a4SJacob Faibussowitsch { 215299cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215399cafbc1SBarry Smith 215499cafbc1SBarry Smith PetscFunctionBegin; 21559566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21569566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215899cafbc1SBarry Smith } 215999cafbc1SBarry Smith 2160ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2161d71ae5a4SJacob Faibussowitsch { 2162c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2163475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 2164475b8b61SHong Zhang PetscScalar *va, *vv; 2165475b8b61SHong Zhang Vec vB, vA; 2166475b8b61SHong Zhang const PetscScalar *vb; 2167c91732d9SHong Zhang 2168c91732d9SHong Zhang PetscFunctionBegin; 21699566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 21709566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2171475b8b61SHong Zhang 21729566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 2173c91732d9SHong Zhang if (idx) { 2174475b8b61SHong Zhang for (i = 0; i < m; i++) { 2175d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2176c91732d9SHong Zhang } 2177c91732d9SHong Zhang } 2178c91732d9SHong Zhang 21799566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 21809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21819566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2182c91732d9SHong Zhang 21839566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21849566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2185475b8b61SHong Zhang for (i = 0; i < m; i++) { 2186c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2187475b8b61SHong Zhang vv[i] = vb[i]; 2188c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2189475b8b61SHong Zhang } else { 2190475b8b61SHong Zhang vv[i] = va[i]; 21919371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2192c91732d9SHong Zhang } 2193c91732d9SHong Zhang } 21949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 21959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 21969566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21979566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21989566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21999566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 22003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2201c91732d9SHong Zhang } 2202c91732d9SHong Zhang 2203*eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2204*eede4a3fSMark Adams { 2205*eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2206*eede4a3fSMark Adams PetscInt m = A->rmap->n; 2207*eede4a3fSMark Adams Vec vB, vA; 2208*eede4a3fSMark Adams 2209*eede4a3fSMark Adams PetscFunctionBegin; 2210*eede4a3fSMark Adams PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 2211*eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2212*eede4a3fSMark Adams PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 2213*eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2214*eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2215*eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2216*eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2217*eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2218*eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2219*eede4a3fSMark Adams } 2220*eede4a3fSMark Adams 2221ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2222d71ae5a4SJacob Faibussowitsch { 2223f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2224f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2225f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2226f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2227f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2228f07e67edSHong Zhang Vec diagV, offdiagV; 2229ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2230ce496241SStefano Zampini const PetscScalar *ba, *bav; 2231f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2232f07e67edSHong Zhang Mat B = mat->B; 2233f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2234c87e5d42SMatthew Knepley 2235c87e5d42SMatthew Knepley PetscFunctionBegin; 2236f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2237f07e67edSHong Zhang if (A->cmap->N == n) { 22389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22399566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22409566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2244f07e67edSHong Zhang } else if (n == 0) { 2245f07e67edSHong Zhang if (m) { 22469566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22479371c9d4SSatish Balay for (r = 0; r < m; r++) { 22489371c9d4SSatish Balay a[r] = 0.0; 22499371c9d4SSatish Balay if (idx) idx[r] = -1; 22509371c9d4SSatish Balay } 22519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2252f07e67edSHong Zhang } 22533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2254f07e67edSHong Zhang } 2255f07e67edSHong Zhang 22569566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22579566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22589566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22599566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2260f07e67edSHong Zhang 2261f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2263ce496241SStefano Zampini ba = bav; 2264f07e67edSHong Zhang bi = b->i; 2265f07e67edSHong Zhang bj = b->j; 22669566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2267f07e67edSHong Zhang for (r = 0; r < m; r++) { 2268f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2269f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22709371c9d4SSatish Balay offdiagA[r] = *ba; 22719371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2272f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2273f07e67edSHong Zhang offdiagA[r] = 0.0; 2274f07e67edSHong Zhang 2275f07e67edSHong Zhang /* Find first hole in the cmap */ 2276f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2277f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2278f07e67edSHong Zhang if (col > j && j < cstart) { 2279f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2280f07e67edSHong Zhang break; 2281f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2282f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2283f07e67edSHong Zhang break; 2284f07e67edSHong Zhang } 2285f07e67edSHong Zhang } 22864e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2287f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2288f07e67edSHong Zhang if (ncols == 0) { 2289f07e67edSHong Zhang if (cstart) { 2290f07e67edSHong Zhang offdiagIdx[r] = 0; 2291f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2292f07e67edSHong Zhang } else { /* ncols > 0 */ 2293f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2294f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2295f07e67edSHong Zhang } 2296f07e67edSHong Zhang } 2297f07e67edSHong Zhang } 2298f07e67edSHong Zhang 2299f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 23009371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 23019371c9d4SSatish Balay offdiagA[r] = *ba; 23029371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 23039371c9d4SSatish Balay } 23049371c9d4SSatish Balay ba++; 23059371c9d4SSatish Balay bj++; 2306f07e67edSHong Zhang } 2307f07e67edSHong Zhang } 2308f07e67edSHong Zhang 23099566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23109566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2311f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2312f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2313f07e67edSHong Zhang a[r] = diagA[r]; 2314f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2315f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2316f07e67edSHong Zhang a[r] = diagA[r]; 2317c87e5d42SMatthew Knepley if (idx) { 2318f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2319f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2320f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2321f07e67edSHong Zhang } 2322f07e67edSHong Zhang } else { 2323f07e67edSHong Zhang a[r] = offdiagA[r]; 2324f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2325c87e5d42SMatthew Knepley } 2326c87e5d42SMatthew Knepley } 23279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23299566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23309566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23319566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23329566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23339566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2335c87e5d42SMatthew Knepley } 2336c87e5d42SMatthew Knepley 2337ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2338d71ae5a4SJacob Faibussowitsch { 233903bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2340fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2341fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 234203bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 234303bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 234403bc72f1SMatthew Knepley Vec diagV, offdiagV; 2345ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2346ce496241SStefano Zampini const PetscScalar *ba, *bav; 2347fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2348fa213d2fSHong Zhang Mat B = mat->B; 2349fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 235003bc72f1SMatthew Knepley 235103bc72f1SMatthew Knepley PetscFunctionBegin; 2352fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2353fa213d2fSHong Zhang if (A->cmap->N == n) { 23549566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23559566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23569566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23579566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2360fa213d2fSHong Zhang } else if (n == 0) { 2361fa213d2fSHong Zhang if (m) { 23629566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23639371c9d4SSatish Balay for (r = 0; r < m; r++) { 23649371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23659371c9d4SSatish Balay if (idx) idx[r] = -1; 23669371c9d4SSatish Balay } 23679566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2368fa213d2fSHong Zhang } 23693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2370fa213d2fSHong Zhang } 2371fa213d2fSHong Zhang 23729566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23739566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23749566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23759566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2376fa213d2fSHong Zhang 2377fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2379ce496241SStefano Zampini ba = bav; 2380fa213d2fSHong Zhang bi = b->i; 2381fa213d2fSHong Zhang bj = b->j; 23829566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2383fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2384fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2385fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23869371c9d4SSatish Balay offdiagA[r] = *ba; 23879371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2388fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2389fa213d2fSHong Zhang offdiagA[r] = 0.0; 2390fa213d2fSHong Zhang 2391fa213d2fSHong Zhang /* Find first hole in the cmap */ 2392fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2393fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2394fa213d2fSHong Zhang if (col > j && j < cstart) { 2395fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2396fa213d2fSHong Zhang break; 2397fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2398fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2399fa213d2fSHong Zhang break; 2400fa213d2fSHong Zhang } 2401fa213d2fSHong Zhang } 24024e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2403fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2404fa213d2fSHong Zhang if (ncols == 0) { 2405fa213d2fSHong Zhang if (cstart) { 2406fa213d2fSHong Zhang offdiagIdx[r] = 0; 2407fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2408fa213d2fSHong Zhang } else { /* ncols > 0 */ 2409fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2410fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2411fa213d2fSHong Zhang } 2412fa213d2fSHong Zhang } 2413fa213d2fSHong Zhang } 2414fa213d2fSHong Zhang 2415fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24169371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24179371c9d4SSatish Balay offdiagA[r] = *ba; 24189371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24199371c9d4SSatish Balay } 24209371c9d4SSatish Balay ba++; 24219371c9d4SSatish Balay bj++; 2422fa213d2fSHong Zhang } 2423fa213d2fSHong Zhang } 2424fa213d2fSHong Zhang 24259566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24269566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2427fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2428fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242903bc72f1SMatthew Knepley a[r] = diagA[r]; 2430fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2431fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2432fa213d2fSHong Zhang a[r] = diagA[r]; 2433fa213d2fSHong Zhang if (idx) { 2434fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 243503bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2436fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2437fa213d2fSHong Zhang } 243803bc72f1SMatthew Knepley } else { 243903bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2440fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 244103bc72f1SMatthew Knepley } 244203bc72f1SMatthew Knepley } 24439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24449566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24479566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24499566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 245103bc72f1SMatthew Knepley } 245203bc72f1SMatthew Knepley 2453ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2454d71ae5a4SJacob Faibussowitsch { 2455c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24561a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24571a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2458c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2459c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2460c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2461ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2462ce496241SStefano Zampini const PetscScalar *ba, *bav; 24631a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24641a254869SHong Zhang Mat B = mat->B; 24651a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2466c87e5d42SMatthew Knepley 2467c87e5d42SMatthew Knepley PetscFunctionBegin; 24681a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24691a254869SHong Zhang if (A->cmap->N == n) { 24709566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24719566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24729566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24739566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24761a254869SHong Zhang } else if (n == 0) { 24771a254869SHong Zhang if (m) { 24789566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24799371c9d4SSatish Balay for (r = 0; r < m; r++) { 24809371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24819371c9d4SSatish Balay if (idx) idx[r] = -1; 24829371c9d4SSatish Balay } 24839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24841a254869SHong Zhang } 24853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24861a254869SHong Zhang } 24871a254869SHong Zhang 24889566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24899566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24909566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24919566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24921a254869SHong Zhang 24931a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2495ce496241SStefano Zampini ba = bav; 24961a254869SHong Zhang bi = b->i; 24971a254869SHong Zhang bj = b->j; 24989566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24991a254869SHong Zhang for (r = 0; r < m; r++) { 25001a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 25011a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 25029371c9d4SSatish Balay offdiagA[r] = *ba; 25039371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 25041a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 25051a254869SHong Zhang offdiagA[r] = 0.0; 25061a254869SHong Zhang 25071a254869SHong Zhang /* Find first hole in the cmap */ 25081a254869SHong Zhang for (j = 0; j < ncols; j++) { 25091a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25101a254869SHong Zhang if (col > j && j < cstart) { 25111a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25121a254869SHong Zhang break; 25131a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25141a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25151a254869SHong Zhang break; 25161a254869SHong Zhang } 25171a254869SHong Zhang } 25184e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25191a254869SHong Zhang /* a hole is outside compressed Bcols */ 25201a254869SHong Zhang if (ncols == 0) { 25211a254869SHong Zhang if (cstart) { 25221a254869SHong Zhang offdiagIdx[r] = 0; 25231a254869SHong Zhang } else offdiagIdx[r] = cend; 25241a254869SHong Zhang } else { /* ncols > 0 */ 25251a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25261a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25271a254869SHong Zhang } 25281a254869SHong Zhang } 25291a254869SHong Zhang } 25301a254869SHong Zhang 25311a254869SHong Zhang for (j = 0; j < ncols; j++) { 25329371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25339371c9d4SSatish Balay offdiagA[r] = *ba; 25349371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25359371c9d4SSatish Balay } 25369371c9d4SSatish Balay ba++; 25379371c9d4SSatish Balay bj++; 25381a254869SHong Zhang } 25391a254869SHong Zhang } 25401a254869SHong Zhang 25419566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25429566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25431a254869SHong Zhang for (r = 0; r < m; ++r) { 25441a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2545c87e5d42SMatthew Knepley a[r] = diagA[r]; 25461a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25471a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25481a254869SHong Zhang a[r] = diagA[r]; 25491a254869SHong Zhang if (idx) { 25501a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2551c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25521a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25531a254869SHong Zhang } 2554c87e5d42SMatthew Knepley } else { 2555c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25561a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2557c87e5d42SMatthew Knepley } 2558c87e5d42SMatthew Knepley } 25599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25619566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25629566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25639566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25659566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2567c87e5d42SMatthew Knepley } 2568c87e5d42SMatthew Knepley 2569d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2570d71ae5a4SJacob Faibussowitsch { 2571f6d58c54SBarry Smith Mat *dummy; 25725494a064SHong Zhang 25735494a064SHong Zhang PetscFunctionBegin; 25749566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2575f6d58c54SBarry Smith *newmat = *dummy; 25769566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25785494a064SHong Zhang } 25795494a064SHong Zhang 2580ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2581d71ae5a4SJacob Faibussowitsch { 2582bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2583bbead8a2SBarry Smith 2584bbead8a2SBarry Smith PetscFunctionBegin; 25859566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25867b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2588bbead8a2SBarry Smith } 2589bbead8a2SBarry Smith 2590d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2591d71ae5a4SJacob Faibussowitsch { 259273a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 259373a71a0fSBarry Smith 259473a71a0fSBarry Smith PetscFunctionBegin; 259508401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25969566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2597679944adSJunchao Zhang if (x->assembled) { 25989566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2599679944adSJunchao Zhang } else { 26009566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2601679944adSJunchao Zhang } 26029566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 26039566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 26043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260573a71a0fSBarry Smith } 2606bbead8a2SBarry Smith 2607ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2608d71ae5a4SJacob Faibussowitsch { 2609b1b1104fSBarry Smith PetscFunctionBegin; 2610b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2611b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2613b1b1104fSBarry Smith } 2614b1b1104fSBarry Smith 2615b1b1104fSBarry Smith /*@ 2616f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2617f2afee66SBarry Smith 26182ef1f0ffSBarry Smith Not Collective 2619f2afee66SBarry Smith 2620f2afee66SBarry Smith Input Parameter: 2621f2afee66SBarry Smith . A - the matrix 2622f2afee66SBarry Smith 2623f2afee66SBarry Smith Output Parameter: 2624f2afee66SBarry Smith . nz - the number of nonzeros 2625f2afee66SBarry Smith 2626f2afee66SBarry Smith Level: advanced 2627f2afee66SBarry Smith 2628fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2629f2afee66SBarry Smith @*/ 2630d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2631d71ae5a4SJacob Faibussowitsch { 2632f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2633f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2634dfebb78cSStefano Zampini PetscBool isaij; 2635f2afee66SBarry Smith 2636f2afee66SBarry Smith PetscFunctionBegin; 2637dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2638dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2639f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2641f2afee66SBarry Smith } 2642f2afee66SBarry Smith 2643f2afee66SBarry Smith /*@ 2644b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2645b1b1104fSBarry Smith 2646c3339decSBarry Smith Collective 2647b1b1104fSBarry Smith 2648b1b1104fSBarry Smith Input Parameters: 2649b1b1104fSBarry Smith + A - the matrix 265011a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2651b1b1104fSBarry Smith 265296a0c994SBarry Smith Level: advanced 265396a0c994SBarry Smith 2654fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2655b1b1104fSBarry Smith @*/ 2656d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2657d71ae5a4SJacob Faibussowitsch { 2658b1b1104fSBarry Smith PetscFunctionBegin; 2659cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2661b1b1104fSBarry Smith } 2662b1b1104fSBarry Smith 2663d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject) 2664d71ae5a4SJacob Faibussowitsch { 2665b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2666b1b1104fSBarry Smith 2667b1b1104fSBarry Smith PetscFunctionBegin; 2668d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2669b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26709566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26711baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2672d0609cedSBarry Smith PetscOptionsHeadEnd(); 26733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2674b1b1104fSBarry Smith } 2675b1b1104fSBarry Smith 2676ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2677d71ae5a4SJacob Faibussowitsch { 26787d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2679c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26807d68702bSBarry Smith 26817d68702bSBarry Smith PetscFunctionBegin; 2682c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26839566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26845519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2685b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2687b83222d8SBarry Smith aij->nonew = nonew; 26887d68702bSBarry Smith } 26899566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26917d68702bSBarry Smith } 26927d68702bSBarry Smith 2693ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2694d71ae5a4SJacob Faibussowitsch { 26953b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26963b49f96aSBarry Smith 26973b49f96aSBarry Smith PetscFunctionBegin; 269808401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26999566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 27003b49f96aSBarry Smith if (d) { 27013b49f96aSBarry Smith PetscInt rstart; 27029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 27033b49f96aSBarry Smith *d += rstart; 27043b49f96aSBarry Smith } 27053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27063b49f96aSBarry Smith } 27073b49f96aSBarry Smith 2708ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2709d71ae5a4SJacob Faibussowitsch { 2710a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2711a8ee9fb5SBarry Smith 2712a8ee9fb5SBarry Smith PetscFunctionBegin; 27139566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2715a8ee9fb5SBarry Smith } 27163b49f96aSBarry Smith 271758c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2718dec0b466SHong Zhang { 2719dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2720dec0b466SHong Zhang 2721dec0b466SHong Zhang PetscFunctionBegin; 272258c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 272358c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2725dec0b466SHong Zhang } 2726dec0b466SHong Zhang 2727cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2728cda55fadSBarry Smith MatGetRow_MPIAIJ, 2729cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2730cda55fadSBarry Smith MatMult_MPIAIJ, 273197304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27327c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27337c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2734f4259b30SLisandro Dalcin NULL, 2735f4259b30SLisandro Dalcin NULL, 2736f4259b30SLisandro Dalcin NULL, 2737f4259b30SLisandro Dalcin /*10*/ NULL, 2738f4259b30SLisandro Dalcin NULL, 2739f4259b30SLisandro Dalcin NULL, 274041f059aeSBarry Smith MatSOR_MPIAIJ, 2741b7c46309SBarry Smith MatTranspose_MPIAIJ, 274297304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2743cda55fadSBarry Smith MatEqual_MPIAIJ, 2744cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2745cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2746cda55fadSBarry Smith MatNorm_MPIAIJ, 274797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2748cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2749cda55fadSBarry Smith MatSetOption_MPIAIJ, 2750cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2751d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2752f4259b30SLisandro Dalcin NULL, 2753f4259b30SLisandro Dalcin NULL, 2754f4259b30SLisandro Dalcin NULL, 2755f4259b30SLisandro Dalcin NULL, 275626cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2757f4259b30SLisandro Dalcin NULL, 2758f4259b30SLisandro Dalcin NULL, 2759a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2760f4259b30SLisandro Dalcin NULL, 2761d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2762f4259b30SLisandro Dalcin NULL, 2763f4259b30SLisandro Dalcin NULL, 2764f4259b30SLisandro Dalcin NULL, 2765f4259b30SLisandro Dalcin NULL, 2766d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27677dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2768cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2769cda55fadSBarry Smith MatGetValues_MPIAIJ, 2770cb5b572fSBarry Smith MatCopy_MPIAIJ, 2771d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2772cda55fadSBarry Smith MatScale_MPIAIJ, 27737d68702bSBarry Smith MatShift_MPIAIJ, 277499e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2775564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 277673a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27778a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27788a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2779f4259b30SLisandro Dalcin NULL, 2780f4259b30SLisandro Dalcin NULL, 278193dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2782f4259b30SLisandro Dalcin NULL, 2783cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 278472e6a0cfSJed Brown MatPermute_MPIAIJ, 2785f4259b30SLisandro Dalcin NULL, 27867dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2787e03a110bSBarry Smith MatDestroy_MPIAIJ, 2788e03a110bSBarry Smith MatView_MPIAIJ, 2789f4259b30SLisandro Dalcin NULL, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin /*64*/ NULL, 2792f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2793f4259b30SLisandro Dalcin NULL, 2794f4259b30SLisandro Dalcin NULL, 2795f4259b30SLisandro Dalcin NULL, 2796d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2797c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2798f4259b30SLisandro Dalcin NULL, 2799f4259b30SLisandro Dalcin NULL, 2800f4259b30SLisandro Dalcin NULL, 2801f4259b30SLisandro Dalcin NULL, 28023acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2803b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2804f4259b30SLisandro Dalcin NULL, 2805f4259b30SLisandro Dalcin NULL, 2806f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2807f4259b30SLisandro Dalcin /*80*/ NULL, 2808f4259b30SLisandro Dalcin NULL, 2809f4259b30SLisandro Dalcin NULL, 28105bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 2811a3bbdb47SHong Zhang MatIsSymmetric_MPIAIJ, 2812f4259b30SLisandro Dalcin NULL, 2813f4259b30SLisandro Dalcin NULL, 2814f4259b30SLisandro Dalcin NULL, 2815f4259b30SLisandro Dalcin NULL, 2816f4259b30SLisandro Dalcin /*89*/ NULL, 2817f4259b30SLisandro Dalcin NULL, 281826be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2819f4259b30SLisandro Dalcin NULL, 2820f4259b30SLisandro Dalcin NULL, 2821cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2822f4259b30SLisandro Dalcin NULL, 2823f4259b30SLisandro Dalcin NULL, 2824f4259b30SLisandro Dalcin NULL, 2825b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28264222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2827f4259b30SLisandro Dalcin NULL, 2828f4259b30SLisandro Dalcin NULL, 28292fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2830f4259b30SLisandro Dalcin NULL, 2831d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 283299cafbc1SBarry Smith MatRealPart_MPIAIJ, 283369db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2834f4259b30SLisandro Dalcin NULL, 2835f4259b30SLisandro Dalcin NULL, 2836f4259b30SLisandro Dalcin /*109*/ NULL, 2837f4259b30SLisandro Dalcin NULL, 28385494a064SHong Zhang MatGetRowMin_MPIAIJ, 2839f4259b30SLisandro Dalcin NULL, 28403b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2841d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2842f4259b30SLisandro Dalcin NULL, 2843c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2844f4259b30SLisandro Dalcin NULL, 2845f4259b30SLisandro Dalcin NULL, 2846b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2847f4259b30SLisandro Dalcin NULL, 2848f4259b30SLisandro Dalcin NULL, 2849f4259b30SLisandro Dalcin NULL, 2850b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2851f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2852a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2853bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2854a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28557dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2856f4259b30SLisandro Dalcin /*129*/ NULL, 2857f4259b30SLisandro Dalcin NULL, 2858f4259b30SLisandro Dalcin NULL, 2859187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2860f4259b30SLisandro Dalcin NULL, 2861f4259b30SLisandro Dalcin /*134*/ NULL, 2862f4259b30SLisandro Dalcin NULL, 2863f4259b30SLisandro Dalcin NULL, 2864f4259b30SLisandro Dalcin NULL, 2865f4259b30SLisandro Dalcin NULL, 286646533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2867f4259b30SLisandro Dalcin NULL, 2868f4259b30SLisandro Dalcin NULL, 28699c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2870a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28714222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2872f4259b30SLisandro Dalcin /*145*/ NULL, 2873f4259b30SLisandro Dalcin NULL, 287472833a62Smarkadams4 NULL, 287572833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28762d776b49SBarry Smith NULL, 2877dec0b466SHong Zhang /*150*/ NULL, 2878*eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 2879*eede4a3fSMark Adams MatGetRowSumAbs_MPIAIJ}; 288036ce4990SBarry Smith 2881ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2882d71ae5a4SJacob Faibussowitsch { 28832e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28842e8a6d31SBarry Smith 28852e8a6d31SBarry Smith PetscFunctionBegin; 28869566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28892e8a6d31SBarry Smith } 28902e8a6d31SBarry Smith 2891ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2892d71ae5a4SJacob Faibussowitsch { 28932e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28942e8a6d31SBarry Smith 28952e8a6d31SBarry Smith PetscFunctionBegin; 28969566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28992e8a6d31SBarry Smith } 29008a729477SBarry Smith 2901d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2902d71ae5a4SJacob Faibussowitsch { 2903ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29045d2a9ed1SStefano Zampini PetscMPIInt size; 2905a23d5eceSKris Buschelman 2906a23d5eceSKris Buschelman PetscFunctionBegin; 2907ad79cf63SBarry Smith if (B->hash_active) { 2908aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2909ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2910ad79cf63SBarry Smith } 29119566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2913899cda47SBarry Smith 2914cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2915eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2916cb7b82ddSBarry Smith #else 29179566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2918cb7b82ddSBarry Smith #endif 29199566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29209566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29219566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2922cb7b82ddSBarry Smith 29239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 29249566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29259566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29279566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29289566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2929cb7b82ddSBarry Smith 2930ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29319566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29329566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29349566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2935899cda47SBarry Smith 29369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29379566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2938526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2939cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 294015001458SStefano Zampini B->assembled = PETSC_FALSE; 29413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2942a23d5eceSKris Buschelman } 2943a23d5eceSKris Buschelman 2944ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2945d71ae5a4SJacob Faibussowitsch { 2946ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2947846b4da1SFande Kong 2948846b4da1SFande Kong PetscFunctionBegin; 2949846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29509566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29519566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2952846b4da1SFande Kong 2953846b4da1SFande Kong #if defined(PETSC_USE_CTABLE) 2954eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2955846b4da1SFande Kong #else 29569566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2957846b4da1SFande Kong #endif 29589566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29609566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2961846b4da1SFande Kong 29629566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->A)); 29639566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->B)); 2964846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2965846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2966846b4da1SFande Kong B->assembled = PETSC_FALSE; 29673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2968846b4da1SFande Kong } 2969846b4da1SFande Kong 2970d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2971d71ae5a4SJacob Faibussowitsch { 2972d6dfbf8fSBarry Smith Mat mat; 2973416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2974d6dfbf8fSBarry Smith 29753a40ed3dSBarry Smith PetscFunctionBegin; 2976f4259b30SLisandro Dalcin *newmat = NULL; 29779566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29789566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29799566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29809566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2981273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2982e1b6402fSHong Zhang 2983d5f3da31SBarry Smith mat->factortype = matin->factortype; 2984501880eeSStefano Zampini mat->assembled = matin->assembled; 2985e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2986d6dfbf8fSBarry Smith 298717699dbbSLois Curfman McInnes a->size = oldmat->size; 298817699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2989e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2990e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2991501880eeSStefano Zampini a->rowindices = NULL; 2992501880eeSStefano Zampini a->rowvalues = NULL; 2993bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2994d6dfbf8fSBarry Smith 29959566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29969566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2997420957c1SBarry Smith if (matin->hash_active) { 2998420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2999420957c1SBarry Smith } else { 3000420957c1SBarry Smith mat->preallocated = matin->preallocated; 30012ee70a88SLois Curfman McInnes if (oldmat->colmap) { 3002aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3003eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3004b1fc9764SSatish Balay #else 30059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30069566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3007b1fc9764SSatish Balay #endif 3008501880eeSStefano Zampini } else a->colmap = NULL; 30093f41c07dSBarry Smith if (oldmat->garray) { 3010b1d57f15SBarry Smith PetscInt len; 3011d0f46423SBarry Smith len = oldmat->B->cmap->n; 30129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30139566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3014501880eeSStefano Zampini } else a->garray = NULL; 3015d6dfbf8fSBarry Smith 30160de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30170de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30180de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3019aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3020aa624791SPierre Jolivet if (oldmat->Mvctx) PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 30219566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30229566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3023420957c1SBarry Smith } 30249566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30258a729477SBarry Smith *newmat = mat; 30263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30278a729477SBarry Smith } 3028416022c9SBarry Smith 3029d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3030d71ae5a4SJacob Faibussowitsch { 303152f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 303252f91c60SVaclav Hapla 303352f91c60SVaclav Hapla PetscFunctionBegin; 303452f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 303552f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3036c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30379566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30389566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30399566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 304052f91c60SVaclav Hapla if (isbinary) { 30419566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 304252f91c60SVaclav Hapla } else if (ishdf5) { 304352f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30449566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 304552f91c60SVaclav Hapla #else 304652f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 304752f91c60SVaclav Hapla #endif 304852f91c60SVaclav Hapla } else { 304998921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 305052f91c60SVaclav Hapla } 30513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 305252f91c60SVaclav Hapla } 305352f91c60SVaclav Hapla 3054d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3055d71ae5a4SJacob Faibussowitsch { 30563ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30573ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30583ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30598fb81238SShri Abhyankar 30608fb81238SShri Abhyankar PetscFunctionBegin; 30619566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30628fb81238SShri Abhyankar 30633ea6fe3dSLisandro Dalcin /* read in matrix header */ 30649566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 306508401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30669371c9d4SSatish Balay M = header[1]; 30679371c9d4SSatish Balay N = header[2]; 30689371c9d4SSatish Balay nz = header[3]; 306908401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 307008401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 307108401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 307208ea439dSMark F. Adams 30733ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30749566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30753ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30763ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30773ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30789566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30799566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30808fb81238SShri Abhyankar 30813ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30829566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3083aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30848fb81238SShri Abhyankar 30853ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30869566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30889566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30899371c9d4SSatish Balay rowidxs[0] = 0; 30909371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 309138b83642SBarry Smith if (nz != PETSC_MAX_INT) { 30921c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 309308401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 309438b83642SBarry Smith } 309538b83642SBarry Smith 30963ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 30979566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 30989566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 30999566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 31003ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 31019566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 31029566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31039566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31058fb81238SShri Abhyankar } 31068fb81238SShri Abhyankar 31073782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3108ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3109d71ae5a4SJacob Faibussowitsch { 31104aa3045dSJed Brown IS iscol_local; 3111c5e4d11fSDmitry Karpeev PetscBool isstride; 3112c5e4d11fSDmitry Karpeev PetscMPIInt lisstride = 0, gisstride; 31133782ecc7SHong Zhang 31143782ecc7SHong Zhang PetscFunctionBegin; 31153782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31173782ecc7SHong Zhang 3118c5e4d11fSDmitry Karpeev if (isstride) { 3119c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31209566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31219566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31229566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 3123c5e4d11fSDmitry Karpeev if (mstart == start && mlen - mstart == len) lisstride = 1; 3124c5e4d11fSDmitry Karpeev } 31253782ecc7SHong Zhang 31261c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3127c5e4d11fSDmitry Karpeev if (gisstride) { 3128c5e4d11fSDmitry Karpeev PetscInt N; 31299566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31309566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31319566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31329566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3133c5e4d11fSDmitry Karpeev } else { 3134c5bfad50SMark F. Adams PetscInt cbs; 31359566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31369566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31379566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3138b79d0421SJed Brown } 31393782ecc7SHong Zhang 31403782ecc7SHong Zhang *isseq = iscol_local; 31413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3142c5e4d11fSDmitry Karpeev } 31438d2139bdSHong Zhang 3144ddfdf956SHong Zhang /* 31459c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31469c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3147ddfdf956SHong Zhang 3148ddfdf956SHong Zhang Input Parameters: 314927430b45SBarry Smith + mat - matrix 315027430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31519c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 315227430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3153ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 315427430b45SBarry Smith 315527430b45SBarry Smith Output Parameters: 315627430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 315727430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 315827430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 315927430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3160ddfdf956SHong Zhang */ 3161ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[]) 3162d71ae5a4SJacob Faibussowitsch { 3163040216a4SHong Zhang Vec x, cmap; 3164040216a4SHong Zhang const PetscInt *is_idx; 3165040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31669c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3167040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3168040216a4SHong Zhang Mat B = a->B; 3169040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3170a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31718b3fa1f7SHong Zhang MPI_Comm comm; 31723a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31733782ecc7SHong Zhang 31743782ecc7SHong Zhang PetscFunctionBegin; 31759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31769566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31778b3fa1f7SHong Zhang 3178ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31799566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31809566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31819566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31829566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31830a351717SHong Zhang 31849c988bcaSHong Zhang /* Get start indices */ 31859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3186ddfdf956SHong Zhang isstart -= ncols; 31879566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3188040216a4SHong Zhang 31899566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31909566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31919566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3193ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31948b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3195ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 31969c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 31978b3fa1f7SHong Zhang } 31989566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 31999566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 32009566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 32018b3fa1f7SHong Zhang 32029c988bcaSHong Zhang /* Get iscol_d */ 32039566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32049566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32059566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3206feb78a15SHong Zhang 32079c988bcaSHong Zhang /* Get isrow_d */ 32089566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3209feb78a15SHong Zhang rstart = mat->rmap->rstart; 32109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32119566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32129c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32139566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3214feb78a15SHong Zhang 32159566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32169566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32179566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3218feb78a15SHong Zhang 32199c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32209566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32219566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3222ddfdf956SHong Zhang 32239566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 322407250d77SHong Zhang 32259566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32269566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 322764efcef9SHong Zhang 32289c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3229ddfdf956SHong Zhang /* off-process column indices */ 32309c988bcaSHong Zhang count = 0; 32319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3233feb78a15SHong Zhang 32349566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32359566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32368b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3237f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32389c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32391c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32401c645242SHong Zhang count++; 32418b3fa1f7SHong Zhang } 32428b3fa1f7SHong Zhang } 32439566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32449566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 324507250d77SHong Zhang 32469566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3247b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3248b6d9b4e0SHong Zhang 32499566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32509c988bcaSHong Zhang *garray = cmap1; 32519c988bcaSHong Zhang 32529566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3256040216a4SHong Zhang } 3257040216a4SHong Zhang 3258b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3259d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3260d71ae5a4SJacob Faibussowitsch { 3261b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32621fd43edeSHong Zhang Mat M = NULL; 32633b00a383SHong Zhang MPI_Comm comm; 3264b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32653b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3266b20e2604SHong Zhang PetscInt n; 32673b00a383SHong Zhang 32683b00a383SHong Zhang PetscFunctionBegin; 32699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32703b00a383SHong Zhang 32713b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3272b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32739566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 327428b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32753b00a383SHong Zhang 32769566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 327728b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32783b00a383SHong Zhang 32799566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 328028b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32813b00a383SHong Zhang 3282b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3283b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32849566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32859566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 328648a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32879566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32889566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32893b00a383SHong Zhang 32903b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 32919c988bcaSHong Zhang const PetscInt *garray; 3292b20e2604SHong Zhang PetscInt BsubN; 32933b00a383SHong Zhang 3294b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32959566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 32963b00a383SHong Zhang 3297b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 32989566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 32999566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 33003b00a383SHong Zhang 33019c988bcaSHong Zhang /* Create submatrix M */ 33029566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M)); 33033b00a383SHong Zhang 3304b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3305b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33067cfce09cSHong Zhang 33079566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3308b20e2604SHong Zhang n = asub->B->cmap->N; 3309b20e2604SHong Zhang if (BsubN > n) { 3310c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33117cfce09cSHong Zhang const PetscInt *idx; 33129c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33139566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33147cfce09cSHong Zhang 33159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33167cfce09cSHong Zhang j = 0; 33179566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3318b20e2604SHong Zhang for (i = 0; i < n; i++) { 33197cfce09cSHong Zhang if (j >= BsubN) break; 33209c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33217cfce09cSHong Zhang 33229c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33237cfce09cSHong Zhang idx_new[i] = idx[j++]; 332498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33257cfce09cSHong Zhang } 33269566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33277cfce09cSHong Zhang 33289566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33299566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33307cfce09cSHong Zhang 3331b20e2604SHong Zhang } else if (BsubN < n) { 333298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3333b20e2604SHong Zhang } 33347cfce09cSHong Zhang 33359566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3336b20e2604SHong Zhang *submat = M; 33373b00a383SHong Zhang 3338e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33399566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33413b00a383SHong Zhang 33429566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33443b00a383SHong Zhang 33459566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33473b00a383SHong Zhang } 33483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33493b00a383SHong Zhang } 33503b00a383SHong Zhang 3351d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3352d71ae5a4SJacob Faibussowitsch { 33531358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33543782ecc7SHong Zhang PetscInt csize; 335518e627e3SHong Zhang PetscInt n, i, j, start, end; 33564a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33573782ecc7SHong Zhang MPI_Comm comm; 33583782ecc7SHong Zhang 33593782ecc7SHong Zhang PetscFunctionBegin; 3360bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3361a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33628f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33639566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3364d5761cdaSHong Zhang if (isrow_d) { 3365d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3366d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3367d5761cdaSHong Zhang } else { 33689566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3369d5761cdaSHong Zhang if (iscol_local) { 3370d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3371d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3372d5761cdaSHong Zhang } 3373d5761cdaSHong Zhang } 33748f69fa7bSHong Zhang } else { 3375e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 337618e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33779566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33783782ecc7SHong Zhang if (!n) { 337918e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33803782ecc7SHong Zhang } else { 33819566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33829566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3383ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33848f69fa7bSHong Zhang } 33853782ecc7SHong Zhang 3386e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 338718e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33889566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 338918e627e3SHong Zhang if (!n) { 339018e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 339118e627e3SHong Zhang } else { 33929566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33939566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 339418e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 339518e627e3SHong Zhang } 339618e627e3SHong Zhang 33979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 33981c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 339918e627e3SHong Zhang sameRowDist = tsameDist[0]; 340018e627e3SHong Zhang } 340118e627e3SHong Zhang 340218e627e3SHong Zhang if (sameRowDist) { 3403b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34043b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34059566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3407b20e2604SHong Zhang } else { /* sameRowDist */ 34083b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34091358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34101358a193SHong Zhang PetscBool sorted; 34119566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34129566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34139566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 341408401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34151358a193SHong Zhang 34169566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34171358a193SHong Zhang if (sorted) { 34181358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34199566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34213782ecc7SHong Zhang } 34221358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 342348c0d076SHong Zhang IS iscol_sub; 34249566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 342548c0d076SHong Zhang if (iscol_sub) { 34269566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 342848c0d076SHong Zhang } 34291358a193SHong Zhang } 34301358a193SHong Zhang } 34311358a193SHong Zhang } 34323782ecc7SHong Zhang 3433bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34343782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34359566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 343628b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34373782ecc7SHong Zhang } else { 343848a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34391358a193SHong Zhang } 34403782ecc7SHong Zhang 34419566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34429566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34438f69fa7bSHong Zhang 3444b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34459566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3447b79d0421SJed Brown } 34483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34494aa3045dSJed Brown } 34504aa3045dSJed Brown 3451feb78a15SHong Zhang /*@C 345211a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3453feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3454feb78a15SHong Zhang 3455d083f849SBarry Smith Collective 3456feb78a15SHong Zhang 3457feb78a15SHong Zhang Input Parameters: 3458feb78a15SHong Zhang + comm - MPI communicator 3459feb78a15SHong Zhang . A - "diagonal" portion of matrix 3460b20e2604SHong Zhang . B - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine 34612ef1f0ffSBarry Smith - garray - global index of `B` columns 3462feb78a15SHong Zhang 3463feb78a15SHong Zhang Output Parameter: 34642ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 346527430b45SBarry Smith 3466feb78a15SHong Zhang Level: advanced 3467feb78a15SHong Zhang 3468feb78a15SHong Zhang Notes: 346911a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 347011a5261eSBarry Smith 34712ef1f0ffSBarry Smith `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore. 3472feb78a15SHong Zhang 34731cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3474feb78a15SHong Zhang @*/ 3475d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat) 3476d71ae5a4SJacob Faibussowitsch { 3477feb78a15SHong Zhang Mat_MPIAIJ *maij; 3478e489de8fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data, *bnew; 3479a5348796SHong Zhang PetscInt *oi = b->i, *oj = b->j, i, nz, col; 3480ce496241SStefano Zampini const PetscScalar *oa; 3481e489de8fSHong Zhang Mat Bnew; 3482feb78a15SHong Zhang PetscInt m, n, N; 34834ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3484feb78a15SHong Zhang 3485feb78a15SHong Zhang PetscFunctionBegin; 34869566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 34879566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 348808401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 348937a5e0faSPierre Jolivet PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3490b6d9b4e0SHong Zhang /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */ 349108401ef6SPierre Jolivet /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */ 3492feb78a15SHong Zhang 3493e489de8fSHong Zhang /* Get global columns of mat */ 34941c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm)); 3495feb78a15SHong Zhang 34969566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N)); 34974ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 34984ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 34994ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 35004ab4d6f4SRichard Tran Mills 350137a5e0faSPierre Jolivet if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3502feb78a15SHong Zhang maij = (Mat_MPIAIJ *)(*mat)->data; 3503feb78a15SHong Zhang 3504feb78a15SHong Zhang (*mat)->preallocated = PETSC_TRUE; 3505feb78a15SHong Zhang 35069566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 35079566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3508feb78a15SHong Zhang 3509e489de8fSHong Zhang /* Set A as diagonal portion of *mat */ 3510feb78a15SHong Zhang maij->A = A; 3511feb78a15SHong Zhang 3512a5348796SHong Zhang nz = oi[m]; 3513a5348796SHong Zhang for (i = 0; i < nz; i++) { 3514a5348796SHong Zhang col = oj[i]; 3515a5348796SHong Zhang oj[i] = garray[col]; 3516feb78a15SHong Zhang } 3517feb78a15SHong Zhang 3518e489de8fSHong Zhang /* Set Bnew as off-diagonal portion of *mat */ 35199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &oa)); 35209566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew)); 35219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &oa)); 3522e489de8fSHong Zhang bnew = (Mat_SeqAIJ *)Bnew->data; 3523e489de8fSHong Zhang bnew->maxnz = b->maxnz; /* allocated nonzeros of B */ 3524e489de8fSHong Zhang maij->B = Bnew; 3525d5761cdaSHong Zhang 352608401ef6SPierre Jolivet PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N); 3527d5761cdaSHong Zhang 3528e489de8fSHong Zhang b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */ 3529d5761cdaSHong Zhang b->free_a = PETSC_FALSE; 3530d5761cdaSHong Zhang b->free_ij = PETSC_FALSE; 35319566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 3532d5761cdaSHong Zhang 3533e489de8fSHong Zhang bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */ 3534e489de8fSHong Zhang bnew->free_a = PETSC_TRUE; 3535e489de8fSHong Zhang bnew->free_ij = PETSC_TRUE; 3536feb78a15SHong Zhang 3537a5348796SHong Zhang /* condense columns of maij->B */ 35389566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 35399566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 35409566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 35419566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 35429566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3544feb78a15SHong Zhang } 3545feb78a15SHong Zhang 3546ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35474aa3045dSJed Brown 3548d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3549d71ae5a4SJacob Faibussowitsch { 355098b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 355185f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 355298b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35531fd43edeSHong Zhang Mat M, Msub, B = a->B; 355498b658c4SHong Zhang MatScalar *aa; 355500e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3556a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 355798b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 355898b658c4SHong Zhang IS iscol_sub, iscmap; 355998b658c4SHong Zhang const PetscInt *is_idx, *cmap; 356018e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3561a31a438cSHong Zhang MPI_Comm comm; 35627e2c5f70SBarry Smith 3563a0ff6018SBarry Smith PetscFunctionBegin; 35649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3565d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35669566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 356728b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35689566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3569d5761cdaSHong Zhang 35709566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 357128b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3572d5761cdaSHong Zhang 35739566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 357428b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3575d5761cdaSHong Zhang 35769566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3577d5761cdaSHong Zhang 3578d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35793b00a383SHong Zhang PetscBool flg; 35803b00a383SHong Zhang 35819566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35829566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3583bcae8d28SHong Zhang 35843b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3585366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35869566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3587366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 35881c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3589366a327dSHong Zhang if (allcolumns) { 3590366a327dSHong Zhang iscol_sub = iscol_local; 35919566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35929566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3593366a327dSHong Zhang 35943b00a383SHong Zhang } else { 35951358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3596244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 35989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 35999566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 36008d2139bdSHong Zhang count = 0; 3601a31a438cSHong Zhang k = 0; 3602a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3603a31a438cSHong Zhang j = is_idx[i]; 3604a31a438cSHong Zhang if (j >= cstart && j < cend) { 3605a31a438cSHong Zhang /* diagonal part of mat */ 36068d2139bdSHong Zhang idx[count] = j; 3607366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36084a3daf6eSHong Zhang } else if (Bn) { 3609a31a438cSHong Zhang /* off-diagonal part of mat */ 3610a31a438cSHong Zhang if (j == garray[k]) { 36118d2139bdSHong Zhang idx[count] = j; 3612a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3613a31a438cSHong Zhang } else if (j > garray[k]) { 3614a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3615a31a438cSHong Zhang if (j == garray[k]) { 3616a31a438cSHong Zhang idx[count] = j; 3617a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36188d2139bdSHong Zhang } 36198d2139bdSHong Zhang } 36208d2139bdSHong Zhang } 36218d2139bdSHong Zhang } 36229566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36238d2139bdSHong Zhang 36249566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36259566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36269566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3627b6d9b4e0SHong Zhang 36289566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3629a31a438cSHong Zhang } 36308b3fa1f7SHong Zhang 36313b00a383SHong Zhang /* (3) Create sequential Msub */ 36329566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3633d5761cdaSHong Zhang } 36348d2139bdSHong Zhang 36359566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 363698b658c4SHong Zhang aij = (Mat_SeqAIJ *)(Msub)->data; 363798b658c4SHong Zhang ii = aij->i; 36389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3639a0ff6018SBarry Smith 3640a0ff6018SBarry Smith /* 3641a0ff6018SBarry Smith m - number of local rows 3642a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3643a0ff6018SBarry Smith rstart - first row in new global matrix generated 3644a0ff6018SBarry Smith */ 36459566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 364698b658c4SHong Zhang 36473b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36483b00a383SHong Zhang /* (4) Create parallel newmat */ 364998b658c4SHong Zhang PetscMPIInt rank, size; 3650bcae8d28SHong Zhang PetscInt csize; 365198b658c4SHong Zhang 36529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 365400e6dbe6SBarry Smith 3655a0ff6018SBarry Smith /* 365600e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 365700e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3658a0ff6018SBarry Smith */ 365900e6dbe6SBarry Smith 366000e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36619566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36626a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36639566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3664a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3665e2c4fddaSBarry Smith nlocal = m; 36666a6a5d1dSBarry Smith } else { 3667a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3668ab50ec6bSBarry Smith } 3669ab50ec6bSBarry Smith } else { 36706a6a5d1dSBarry Smith nlocal = csize; 36716a6a5d1dSBarry Smith } 36729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 367300e6dbe6SBarry Smith rstart = rend - nlocal; 3674aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 367500e6dbe6SBarry Smith 367600e6dbe6SBarry Smith /* next, compute all the lengths */ 367798b658c4SHong Zhang jj = aij->j; 36789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 367900e6dbe6SBarry Smith olens = dlens + m; 368000e6dbe6SBarry Smith for (i = 0; i < m; i++) { 368100e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 368200e6dbe6SBarry Smith olen = 0; 368300e6dbe6SBarry Smith dlen = 0; 368400e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 368515b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 368600e6dbe6SBarry Smith else dlen++; 368700e6dbe6SBarry Smith jj++; 368800e6dbe6SBarry Smith } 368900e6dbe6SBarry Smith olens[i] = olen; 369000e6dbe6SBarry Smith dlens[i] = dlen; 369100e6dbe6SBarry Smith } 3692b6d9b4e0SHong Zhang 36939566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36949566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 369598b658c4SHong Zhang 36969566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 36989566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 36999566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 37009566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 37019566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3702d5761cdaSHong Zhang 3703d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3704a0ff6018SBarry Smith M = *newmat; 37059566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 370608401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37079566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3708c48de900SBarry Smith /* 3709c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3710c48de900SBarry Smith rather than the slower MatSetValues(). 3711c48de900SBarry Smith */ 3712c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3713c48de900SBarry Smith M->assembled = PETSC_FALSE; 3714a0ff6018SBarry Smith } 3715548ecf4dSHong Zhang 37163b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37189566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 371998b658c4SHong Zhang 372098b658c4SHong Zhang jj = aij->j; 37219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3722a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3723a0ff6018SBarry Smith row = rstart + i; 372400e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 372515b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37269566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37279371c9d4SSatish Balay jj += nz; 37289371c9d4SSatish Balay aa += nz; 3729a0ff6018SBarry Smith } 37309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3732a0ff6018SBarry Smith 37339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3735fee21e36SBarry Smith 37369566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 373798b658c4SHong Zhang 373898b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3739fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37403b00a383SHong Zhang *newmat = M; 37419566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubMatrix", (PetscObject)Msub)); 37429566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 374398b658c4SHong Zhang 37449566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubIScol", (PetscObject)iscol_sub)); 37459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 374698b658c4SHong Zhang 37479566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "Subcmap", (PetscObject)iscmap)); 37489566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3749bcae8d28SHong Zhang 3750bcae8d28SHong Zhang if (iscol_local) { 37519566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*newmat), "ISAllGather", (PetscObject)iscol_local)); 37529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3753bcae8d28SHong Zhang } 375498b658c4SHong Zhang } 37553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3756a0ff6018SBarry Smith } 3757273d9f13SBarry Smith 3758df40acb1SHong Zhang /* 3759df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3760df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3761df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3762df40acb1SHong Zhang 376311a5261eSBarry Smith This requires a sequential iscol with all indices. 3764df40acb1SHong Zhang */ 3765d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3766d71ae5a4SJacob Faibussowitsch { 3767df40acb1SHong Zhang PetscMPIInt rank, size; 3768df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3769df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3770df40acb1SHong Zhang Mat M, Mreuse; 377198b658c4SHong Zhang MatScalar *aa, *vwork; 3772df40acb1SHong Zhang MPI_Comm comm; 3773df40acb1SHong Zhang Mat_SeqAIJ *aij; 37740b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3775df40acb1SHong Zhang 3776df40acb1SHong Zhang PetscFunctionBegin; 37779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3780df40acb1SHong Zhang 37810b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37829566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37839566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37840b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 37851c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37860b27a90eSHong Zhang 3787df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37889566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 378928b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37909566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3791df40acb1SHong Zhang } else { 37929566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3793df40acb1SHong Zhang } 3794df40acb1SHong Zhang 3795df40acb1SHong Zhang /* 3796df40acb1SHong Zhang m - number of local rows 3797df40acb1SHong Zhang n - number of columns (same on all processors) 3798df40acb1SHong Zhang rstart - first row in new global matrix generated 3799df40acb1SHong Zhang */ 38009566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 38019566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3802df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 3803df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3804df40acb1SHong Zhang ii = aij->i; 3805df40acb1SHong Zhang jj = aij->j; 3806df40acb1SHong Zhang 3807df40acb1SHong Zhang /* 3808df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3809df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3810df40acb1SHong Zhang */ 3811df40acb1SHong Zhang 3812df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3813df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38149566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3815df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3816df40acb1SHong Zhang nlocal = m; 3817df40acb1SHong Zhang } else { 3818df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3819df40acb1SHong Zhang } 3820df40acb1SHong Zhang } else { 3821df40acb1SHong Zhang nlocal = csize; 3822df40acb1SHong Zhang } 38239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3824df40acb1SHong Zhang rstart = rend - nlocal; 3825aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3826df40acb1SHong Zhang 3827df40acb1SHong Zhang /* next, compute all the lengths */ 38289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3829df40acb1SHong Zhang olens = dlens + m; 3830df40acb1SHong Zhang for (i = 0; i < m; i++) { 3831df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3832df40acb1SHong Zhang olen = 0; 3833df40acb1SHong Zhang dlen = 0; 3834df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3835df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3836df40acb1SHong Zhang else dlen++; 3837df40acb1SHong Zhang jj++; 3838df40acb1SHong Zhang } 3839df40acb1SHong Zhang olens[i] = olen; 3840df40acb1SHong Zhang dlens[i] = dlen; 3841df40acb1SHong Zhang } 38429566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38439566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38449566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38459566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38469566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38479566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3848df40acb1SHong Zhang } else { 3849df40acb1SHong Zhang PetscInt ml, nl; 3850df40acb1SHong Zhang 3851df40acb1SHong Zhang M = *newmat; 38529566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 385308401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38549566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3855df40acb1SHong Zhang /* 3856df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3857df40acb1SHong Zhang rather than the slower MatSetValues(). 3858df40acb1SHong Zhang */ 3859df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3860df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3861df40acb1SHong Zhang } 38629566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 3863df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3864df40acb1SHong Zhang ii = aij->i; 3865df40acb1SHong Zhang jj = aij->j; 38662e5835c6SStefano Zampini 38672e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3869df40acb1SHong Zhang for (i = 0; i < m; i++) { 3870df40acb1SHong Zhang row = rstart + i; 3871df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38729371c9d4SSatish Balay cwork = jj; 38738e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38749371c9d4SSatish Balay vwork = aa; 38758e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38769566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3877df40acb1SHong Zhang } 38789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3879df40acb1SHong Zhang 38809566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38819566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3882df40acb1SHong Zhang *newmat = M; 3883df40acb1SHong Zhang 3884df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3885df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38869566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38879566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3888df40acb1SHong Zhang } 38893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3890df40acb1SHong Zhang } 3891df40acb1SHong Zhang 3892ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3893d71ae5a4SJacob Faibussowitsch { 38946a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 3895899cda47SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii; 3896ccd8e176SBarry Smith const PetscInt *JJ; 3897eeb24464SBarry Smith PetscBool nooffprocentries; 38986a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3899ccd8e176SBarry Smith 3900ccd8e176SBarry Smith PetscFunctionBegin; 3901aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]); 3902899cda47SBarry Smith 39039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 39049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3905d0f46423SBarry Smith m = B->rmap->n; 3906d0f46423SBarry Smith cstart = B->cmap->rstart; 3907d0f46423SBarry Smith cend = B->cmap->rend; 3908d0f46423SBarry Smith rstart = B->rmap->rstart; 3909899cda47SBarry Smith 39109566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3911ccd8e176SBarry Smith 391276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39138f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3914ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39158e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 391608401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 391708401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 391808401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3919ecc77c7aSBarry Smith } 392076bd3646SJed Brown } 3921ecc77c7aSBarry Smith 39228f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3923b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39248e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 3925ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3926ccd8e176SBarry Smith d = 0; 39270daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39280daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3929ccd8e176SBarry Smith } 3930ccd8e176SBarry Smith d_nnz[i] = d; 3931ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3932ccd8e176SBarry Smith } 39339566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39349566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3935ccd8e176SBarry Smith 39368f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3937ccd8e176SBarry Smith ii = i + rstart; 39388e3a54c0SPierre Jolivet PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES)); 3939ccd8e176SBarry Smith } 3940eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3941eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39429566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39439566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3944eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3945ccd8e176SBarry Smith 39466a3d2595SBarry Smith /* count number of entries below block diagonal */ 39476a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39486a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39496a3d2595SBarry Smith Aij->ld = ld; 39506a3d2595SBarry Smith for (i = 0; i < m; i++) { 39516a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39526a3d2595SBarry Smith j = 0; 3953ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39546a3d2595SBarry Smith ld[i] = j; 3955720a2405SPierre Jolivet if (J) J += nnz; 39566a3d2595SBarry Smith } 39576a3d2595SBarry Smith 39589566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3960ccd8e176SBarry Smith } 3961ccd8e176SBarry Smith 39621eea217eSSatish Balay /*@ 396311a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3964ccd8e176SBarry Smith (the default parallel PETSc format). 3965ccd8e176SBarry Smith 3966d083f849SBarry Smith Collective 3967ccd8e176SBarry Smith 3968ccd8e176SBarry Smith Input Parameters: 3969a1661176SMatthew Knepley + B - the matrix 3970ccd8e176SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 39710daa03b5SJed Brown . j - the column indices for each local row (starts with zero) 3972ccd8e176SBarry Smith - v - optional values in the matrix 3973ccd8e176SBarry Smith 3974ccd8e176SBarry Smith Level: developer 3975ccd8e176SBarry Smith 397612251496SSatish Balay Notes: 39772ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39782ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 397911a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 398012251496SSatish Balay 39812ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 398212251496SSatish Balay 3983a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3984a4bd8bc0SBarry Smith 3985a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3986a4bd8bc0SBarry Smith 3987a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3988a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3989a4bd8bc0SBarry Smith 399012251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 399112251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3992c5e4d11fSDmitry Karpeev as shown 399327430b45SBarry Smith .vb 399427430b45SBarry Smith 1 0 0 399527430b45SBarry Smith 2 0 3 P0 399627430b45SBarry Smith ------- 399727430b45SBarry Smith 4 5 6 P1 399827430b45SBarry Smith 399927430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 400027430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 400127430b45SBarry Smith j = {0,0,2} [size = 3] 400227430b45SBarry Smith v = {1,2,3} [size = 3] 400327430b45SBarry Smith 400427430b45SBarry Smith Process1 [P1] rows_owned=[2] 400527430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 400627430b45SBarry Smith j = {0,1,2} [size = 3] 400727430b45SBarry Smith v = {4,5,6} [size = 3] 400827430b45SBarry Smith .ve 400912251496SSatish Balay 4010fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4011a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4012ccd8e176SBarry Smith @*/ 4013d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4014d71ae5a4SJacob Faibussowitsch { 4015ccd8e176SBarry Smith PetscFunctionBegin; 4016cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4018ccd8e176SBarry Smith } 4019ccd8e176SBarry Smith 4020273d9f13SBarry Smith /*@C 402111a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4022273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4023273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 402420f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4025273d9f13SBarry Smith 4026d083f849SBarry Smith Collective 4027273d9f13SBarry Smith 4028273d9f13SBarry Smith Input Parameters: 40291c4f3114SJed Brown + B - the matrix 4030273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4031273d9f13SBarry Smith (same value is used for all local rows) 4032273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4033273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40342ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4035273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40363287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40373287b5eaSJed Brown the diagonal entry even if it is zero. 4038273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4039273d9f13SBarry Smith submatrix (same value is used for all local rows). 4040273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4041273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40422ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4043273d9f13SBarry Smith structure. The size of this array is equal to the number 4044273d9f13SBarry Smith of local rows, i.e 'm'. 4045273d9f13SBarry Smith 40462920cce0SJacob Faibussowitsch Example Usage: 404727430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 404827430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 404927430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 405027430b45SBarry Smith as follows 405127430b45SBarry Smith 405227430b45SBarry Smith .vb 405327430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 405427430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 405527430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 405627430b45SBarry Smith ------------------------------------- 405727430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 405827430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 405927430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 406027430b45SBarry Smith ------------------------------------- 406127430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 406227430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 406327430b45SBarry Smith .ve 406427430b45SBarry Smith 406527430b45SBarry Smith This can be represented as a collection of submatrices as 406627430b45SBarry Smith .vb 406727430b45SBarry Smith A B C 406827430b45SBarry Smith D E F 406927430b45SBarry Smith G H I 407027430b45SBarry Smith .ve 407127430b45SBarry Smith 407227430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 407327430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 407427430b45SBarry Smith 407527430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407627430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407727430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 407827430b45SBarry Smith 407927430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 408027430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 408127430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 408227430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 408327430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 408427430b45SBarry Smith matrix, ans [DF] as another `MATSEQAIJ` matrix. 408527430b45SBarry Smith 408620f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 408720f4b53cSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 408827430b45SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 408920f4b53cSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 409027430b45SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 409120f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 409227430b45SBarry Smith .vb 409327430b45SBarry Smith proc0 dnz = 2, o_nz = 2 409427430b45SBarry Smith proc1 dnz = 3, o_nz = 2 409527430b45SBarry Smith proc2 dnz = 1, o_nz = 4 409627430b45SBarry Smith .ve 409720f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 409827430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 409927430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 410027430b45SBarry Smith 34 values. 410127430b45SBarry Smith 410220f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 410327430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 410420f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 410527430b45SBarry Smith .vb 410627430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 410727430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 410827430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 410927430b45SBarry Smith .ve 411027430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 411127430b45SBarry Smith hence pre-allocation is perfect. 411227430b45SBarry Smith 411327430b45SBarry Smith Level: intermediate 411427430b45SBarry Smith 411527430b45SBarry Smith Notes: 411649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 411749a6f317SBarry Smith 411827430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41190598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4120651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4121273d9f13SBarry Smith 4122273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4123273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4124273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4125273d9f13SBarry Smith 4126273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4127a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4128a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4129a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4130a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4131a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4132a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4133a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4134a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4135273d9f13SBarry Smith 41362ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4137273d9f13SBarry Smith 413827430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4139aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 414027430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4141aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4142aa95bbe8SBarry Smith 41431cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4144a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4145273d9f13SBarry Smith @*/ 4146d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4147d71ae5a4SJacob Faibussowitsch { 4148273d9f13SBarry Smith PetscFunctionBegin; 41496ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41506ba663aaSJed Brown PetscValidType(B, 1); 4151cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4153273d9f13SBarry Smith } 4154273d9f13SBarry Smith 415558d36128SBarry Smith /*@ 415611a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41578f8f2f0dSBarry Smith CSR format for the local rows. 41582fb0ec9aSBarry Smith 4159d083f849SBarry Smith Collective 41602fb0ec9aSBarry Smith 41612fb0ec9aSBarry Smith Input Parameters: 41622fb0ec9aSBarry Smith + comm - MPI communicator 416311a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41642fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 416511a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 41662fb0ec9aSBarry Smith calculated if N is given) For square matrices n is almost always m. 416711a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 416811a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4169483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41702fb0ec9aSBarry Smith . j - column indices 4171f1f2ae84SBarry Smith - a - optional matrix values 41722fb0ec9aSBarry Smith 41732fb0ec9aSBarry Smith Output Parameter: 41742fb0ec9aSBarry Smith . mat - the matrix 417503bfb495SBarry Smith 41762fb0ec9aSBarry Smith Level: intermediate 41772fb0ec9aSBarry Smith 41782fb0ec9aSBarry Smith Notes: 41792ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 41802fb0ec9aSBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 41812ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41822fb0ec9aSBarry Smith 41832ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 418412251496SSatish Balay 4185a4bd8bc0SBarry Smith Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArrays()` 4186a4bd8bc0SBarry Smith 4187a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 4188a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4189a4bd8bc0SBarry Smith 419012251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 419112251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 4192c5e4d11fSDmitry Karpeev as shown 41932ef1f0ffSBarry Smith .vb 41942ef1f0ffSBarry Smith 1 0 0 41952ef1f0ffSBarry Smith 2 0 3 P0 41962ef1f0ffSBarry Smith ------- 41972ef1f0ffSBarry Smith 4 5 6 P1 41988f8f2f0dSBarry Smith 41992ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 42002ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 42012ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 42022ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 42032fb0ec9aSBarry Smith 42042ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 42052ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 42062ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 42072ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42082ef1f0ffSBarry Smith .ve 42092ef1f0ffSBarry Smith 42101cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIK`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4211a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42122fb0ec9aSBarry Smith @*/ 4213d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4214d71ae5a4SJacob Faibussowitsch { 42152fb0ec9aSBarry Smith PetscFunctionBegin; 421608401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 421708401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42189566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42209566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42219566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42229566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42242fb0ec9aSBarry Smith } 42252fb0ec9aSBarry Smith 42268f8f2f0dSBarry Smith /*@ 422711a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42282ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42292ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42306a3d2595SBarry Smith 42316a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42328f8f2f0dSBarry Smith 42338f8f2f0dSBarry Smith Collective 42348f8f2f0dSBarry Smith 42358f8f2f0dSBarry Smith Input Parameters: 42368f8f2f0dSBarry Smith + mat - the matrix 423711a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42388f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 423911a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42408f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 424111a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 424211a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42438f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42448f8f2f0dSBarry Smith . J - column indices 42458f8f2f0dSBarry Smith - v - matrix values 42468f8f2f0dSBarry Smith 42472ef1f0ffSBarry Smith Level: deprecated 42488f8f2f0dSBarry Smith 42491cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4250a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42518f8f2f0dSBarry Smith @*/ 4252d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4253d71ae5a4SJacob Faibussowitsch { 42546a3d2595SBarry Smith PetscInt nnz, i; 42558f8f2f0dSBarry Smith PetscBool nooffprocentries; 42568f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4257fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4258fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42598f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42606a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42616a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42628f8f2f0dSBarry Smith 42638f8f2f0dSBarry Smith PetscFunctionBegin; 4264aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 426508401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 426608401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 426708401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42688f8f2f0dSBarry Smith 42699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42709566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42718f8f2f0dSBarry Smith 42728f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42734c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42744c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42754c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42764c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42774c17f1ccSBarry Smith } 42784c17f1ccSBarry Smith } 42798f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42808f8f2f0dSBarry Smith Iii = Ii[i]; 42818f8f2f0dSBarry Smith ldi = ld[i]; 42828f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42839566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42849566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42859566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42868f8f2f0dSBarry Smith ad += md; 42878f8f2f0dSBarry Smith ao += nnz - md; 42888f8f2f0dSBarry Smith } 42898f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42908f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42939566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42949566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42959566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42969566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42979566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42988f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 42993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43008f8f2f0dSBarry Smith } 43018f8f2f0dSBarry Smith 43026a3d2595SBarry Smith /*@ 430311a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 43046a3d2595SBarry Smith 43056a3d2595SBarry Smith Collective 43066a3d2595SBarry Smith 43076a3d2595SBarry Smith Input Parameters: 43086a3d2595SBarry Smith + mat - the matrix 43096a3d2595SBarry Smith - v - matrix values, stored by row 43106a3d2595SBarry Smith 43116a3d2595SBarry Smith Level: intermediate 43126a3d2595SBarry Smith 4313a4bd8bc0SBarry Smith Notes: 43146a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43156a3d2595SBarry Smith 4316a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4317a4bd8bc0SBarry Smith 43181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4319a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43206a3d2595SBarry Smith @*/ 4321d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4322d71ae5a4SJacob Faibussowitsch { 43236a3d2595SBarry Smith PetscInt nnz, i, m; 43246a3d2595SBarry Smith PetscBool nooffprocentries; 43256a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43266a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43276a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43286a3d2595SBarry Smith PetscScalar *ad, *ao; 43296a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43306a3d2595SBarry Smith PetscInt ldi, Iii, md; 43316a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43326a3d2595SBarry Smith 43336a3d2595SBarry Smith PetscFunctionBegin; 43346a3d2595SBarry Smith m = mat->rmap->n; 43356a3d2595SBarry Smith 43366a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43376a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43386a3d2595SBarry Smith Iii = 0; 43396a3d2595SBarry Smith for (i = 0; i < m; i++) { 43406a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43416a3d2595SBarry Smith ldi = ld[i]; 43426a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43436a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43446a3d2595SBarry Smith ad += md; 4345810441c8SPierre Jolivet if (ao) { 4346810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4347810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43486a3d2595SBarry Smith ao += nnz - md; 4349810441c8SPierre Jolivet } 43506a3d2595SBarry Smith Iii += nnz; 43516a3d2595SBarry Smith } 43526a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43536a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43546a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43556a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43566a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43576a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43586a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43596a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43606a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43616a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43636a3d2595SBarry Smith } 43646a3d2595SBarry Smith 4365273d9f13SBarry Smith /*@C 436611a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4367273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4368273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43692ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4370273d9f13SBarry Smith 4371d083f849SBarry Smith Collective 4372273d9f13SBarry Smith 4373273d9f13SBarry Smith Input Parameters: 4374273d9f13SBarry Smith + comm - MPI communicator 437511a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4376273d9f13SBarry Smith This value should be the same as the local size used in creating the 4377273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4378273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 437945f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4380273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 438111a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 438211a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4383273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4384273d9f13SBarry Smith (same value is used for all local rows) 4385273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4386273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43872ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4388273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4389273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4390273d9f13SBarry Smith submatrix (same value is used for all local rows). 4391273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4392273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43932ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4394273d9f13SBarry Smith structure. The size of this array is equal to the number 4395273d9f13SBarry Smith of local rows, i.e 'm'. 4396273d9f13SBarry Smith 4397273d9f13SBarry Smith Output Parameter: 4398273d9f13SBarry Smith . A - the matrix 4399273d9f13SBarry Smith 440027430b45SBarry Smith Options Database Keys: 440127430b45SBarry Smith + -mat_no_inode - Do not use inodes 440227430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 440327430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 440427430b45SBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the vecscatter be viewed as a matrix. 440527430b45SBarry Smith Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 440627430b45SBarry Smith 44072ef1f0ffSBarry Smith Level: intermediate 44082ef1f0ffSBarry Smith 440927430b45SBarry Smith Notes: 441077433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4411f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 441211a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4413175b88e8SBarry Smith 441449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 441549a6f317SBarry Smith 44162ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44172ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4418273d9f13SBarry Smith storage requirements for this matrix. 4419273d9f13SBarry Smith 442011a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4421273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4422273d9f13SBarry Smith that argument. 4423273d9f13SBarry Smith 4424273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4425273d9f13SBarry Smith (possibly both). 4426273d9f13SBarry Smith 442733a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 442833a7c187SSatish Balay first m0 rows belong to process 0, the next m1 rows belong to 442933a7c187SSatish Balay process 1, the next m2 rows belong to process 2 etc.. where 443033a7c187SSatish Balay m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores 443133a7c187SSatish Balay values corresponding to [m x N] submatrix. 4432273d9f13SBarry Smith 443333a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 443433a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4435df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 443633a7c187SSatish Balay 443733a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 443833a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 443933a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 444033a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 444133a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 444233a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 444333a7c187SSatish Balay illustrates this concept. 444433a7c187SSatish Balay 444533a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 444633a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 444733a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 444833a7c187SSatish Balay local matrix (a rectangular submatrix). 4449273d9f13SBarry Smith 44502ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4451273d9f13SBarry Smith 445297d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44532ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4454da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4455da57b5cdSKarl Rupp .vb 44562ef1f0ffSBarry Smith MatCreate(..., &A); 44572ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44582ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44592ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4460da57b5cdSKarl Rupp .ve 446197d05335SKris Buschelman 4462273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4463273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4464273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4465273d9f13SBarry Smith 44662920cce0SJacob Faibussowitsch Example Usage: 4467273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4468273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4469273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4470efc377ccSKarl Rupp as follows 4471273d9f13SBarry Smith 4472273d9f13SBarry Smith .vb 4473273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4474273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4475273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4476273d9f13SBarry Smith ------------------------------------- 4477273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4478273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4479273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4480273d9f13SBarry Smith ------------------------------------- 4481273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4482273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4483273d9f13SBarry Smith .ve 4484273d9f13SBarry Smith 4485da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4486273d9f13SBarry Smith 4487273d9f13SBarry Smith .vb 4488273d9f13SBarry Smith A B C 4489273d9f13SBarry Smith D E F 4490273d9f13SBarry Smith G H I 4491273d9f13SBarry Smith .ve 4492273d9f13SBarry Smith 4493273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4494273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4495273d9f13SBarry Smith 4496273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4497273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4498273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4499273d9f13SBarry Smith 4500273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4501273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4502273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4503273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 450427430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 4505273d9f13SBarry Smith matrix, ans [DF] as another SeqAIJ matrix. 4506273d9f13SBarry Smith 45072ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45082ef1f0ffSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 4509273d9f13SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 45102ef1f0ffSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 4511273d9f13SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45122ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4513273d9f13SBarry Smith .vb 451427430b45SBarry Smith proc0 dnz = 2, o_nz = 2 451527430b45SBarry Smith proc1 dnz = 3, o_nz = 2 451627430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4517273d9f13SBarry Smith .ve 45182ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4519273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4520273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4521273d9f13SBarry Smith 34 values. 4522273d9f13SBarry Smith 45232ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4524a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4525da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4526273d9f13SBarry Smith .vb 452727430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 452827430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 452927430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4530273d9f13SBarry Smith .ve 4531273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4532273d9f13SBarry Smith hence pre-allocation is perfect. 4533273d9f13SBarry Smith 45341cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4535db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()` 4536273d9f13SBarry Smith @*/ 4537d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4538d71ae5a4SJacob Faibussowitsch { 4539b1d57f15SBarry Smith PetscMPIInt size; 4540273d9f13SBarry Smith 4541273d9f13SBarry Smith PetscFunctionBegin; 45429566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45439566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4545273d9f13SBarry Smith if (size > 1) { 45469566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45479566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4548273d9f13SBarry Smith } else { 45499566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4551273d9f13SBarry Smith } 45523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4553273d9f13SBarry Smith } 4554195d93cdSBarry Smith 45550b98dbb4SBarry Smith /*MC 45560b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix 45570b98dbb4SBarry Smith 45580b98dbb4SBarry Smith Synopsis: 45590b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45600b98dbb4SBarry Smith 45610b98dbb4SBarry Smith Not Collective 45620b98dbb4SBarry Smith 45630b98dbb4SBarry Smith Input Parameter: 45640b98dbb4SBarry Smith . A - the `MATMPIAIJ` matrix 45650b98dbb4SBarry Smith 45660b98dbb4SBarry Smith Output Parameters: 45670b98dbb4SBarry Smith + Ad - the diagonal portion of the matrix 45684cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45692ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45700b98dbb4SBarry Smith - ierr - error code 45710b98dbb4SBarry Smith 45720b98dbb4SBarry Smith Level: advanced 45730b98dbb4SBarry Smith 45740b98dbb4SBarry Smith Note: 45750b98dbb4SBarry Smith Use `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45760b98dbb4SBarry Smith 45771cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()` 45780b98dbb4SBarry Smith M*/ 45790b98dbb4SBarry Smith 45800b98dbb4SBarry Smith /*MC 45810b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45820b98dbb4SBarry Smith 45830b98dbb4SBarry Smith Synopsis: 45840b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45850b98dbb4SBarry Smith 45860b98dbb4SBarry Smith Not Collective 45870b98dbb4SBarry Smith 45880b98dbb4SBarry Smith Input Parameters: 45890b98dbb4SBarry Smith + A - the `MATMPIAIJ` matrix 45900b98dbb4SBarry Smith . Ad - the diagonal portion of the matrix 45914cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45922ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45930b98dbb4SBarry Smith - ierr - error code 45940b98dbb4SBarry Smith 45950b98dbb4SBarry Smith Level: advanced 45960b98dbb4SBarry Smith 45971cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()` 45980b98dbb4SBarry Smith M*/ 45990b98dbb4SBarry Smith 4600127ca0efSMatthew Knepley /*@C 46010ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4602127ca0efSMatthew Knepley 46032ef1f0ffSBarry Smith Not Collective 4604127ca0efSMatthew Knepley 4605127ca0efSMatthew Knepley Input Parameter: 460611a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4607127ca0efSMatthew Knepley 4608127ca0efSMatthew Knepley Output Parameters: 460911a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 461011a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46112ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4612127ca0efSMatthew Knepley 46130ab4885dSBarry Smith Level: intermediate 46140ab4885dSBarry Smith 461511a5261eSBarry Smith Note: 46162ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46172ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46182ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4619127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4620127ca0efSMatthew Knepley 4621fe59aa6dSJacob Faibussowitsch Fortran Notes: 46220ab4885dSBarry Smith `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()` 4623127ca0efSMatthew Knepley 4624fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4625127ca0efSMatthew Knepley @*/ 4626d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4627d71ae5a4SJacob Faibussowitsch { 4628195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 462904cf37c7SBarry Smith PetscBool flg; 4630b1d57f15SBarry Smith 4631195d93cdSBarry Smith PetscFunctionBegin; 46329566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 463328b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 463421e72a00SBarry Smith if (Ad) *Ad = a->A; 463521e72a00SBarry Smith if (Ao) *Ao = a->B; 463621e72a00SBarry Smith if (colmap) *colmap = a->garray; 46373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4638195d93cdSBarry Smith } 4639a2243be0SBarry Smith 4640d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4641d71ae5a4SJacob Faibussowitsch { 4642110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46439b8102ccSHong Zhang PetscInt *indx; 4644110bb6e1SHong Zhang PetscScalar *values; 4645421ddf4dSJunchao Zhang MatType rootType; 46469b8102ccSHong Zhang 46479b8102ccSHong Zhang PetscFunctionBegin; 46489566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4649110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4650110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4651110bb6e1SHong Zhang 465248a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4653a22543b6SHong Zhang /* Check sum(n) = N */ 46541c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 465508401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4656a22543b6SHong Zhang 46579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46589b8102ccSHong Zhang rstart -= m; 46599b8102ccSHong Zhang 4660d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46619b8102ccSHong Zhang for (i = 0; i < m; i++) { 46629566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46639566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46649566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46659b8102ccSHong Zhang } 46669b8102ccSHong Zhang 46679566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46699566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46709566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46719566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46729566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46749566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4675d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46769566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46779b8102ccSHong Zhang } 46789b8102ccSHong Zhang 4679110bb6e1SHong Zhang /* numeric phase */ 46809566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46819b8102ccSHong Zhang for (i = 0; i < m; i++) { 46829566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46839b8102ccSHong Zhang Ii = i + rstart; 46849566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46859566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46869b8102ccSHong Zhang } 46879566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46889566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4690c5d6d63eSBarry Smith } 4691c5d6d63eSBarry Smith 4692d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data) 4693d71ae5a4SJacob Faibussowitsch { 46946718818eSStefano Zampini Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data; 469551a7d1a8SHong Zhang 469651a7d1a8SHong Zhang PetscFunctionBegin; 46973ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46989566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46999566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 47009566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 47019566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 47029566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 47039566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 47049566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 47059566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 47069566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47079566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47089566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47099566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47109566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47119566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471351a7d1a8SHong Zhang } 471451a7d1a8SHong Zhang 4715c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4716c6db04a5SJed Brown #include <petscbt.h> 47174ebed01fSBarry Smith 4718d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4719d71ae5a4SJacob Faibussowitsch { 4720ce94432eSBarry Smith MPI_Comm comm; 472155d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4722b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 4723a2ea699eSBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj; 4724b1d57f15SBarry Smith PetscInt proc, m; 4725b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 4726b1d57f15SBarry Smith PetscInt k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4727b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 472855d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 472955d1abb9SHong Zhang MPI_Status *status; 4730fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4731dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 473255d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4733776b82aeSLisandro Dalcin PetscContainer container; 473455d1abb9SHong Zhang 473555d1abb9SHong Zhang PetscFunctionBegin; 47369566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47379566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47383c2c1871SHong Zhang 47399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 474155d1abb9SHong Zhang 47429566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 474328b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47449566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4746fff043a9SJunchao Zhang aa = a_a; 4747bf0cc555SLisandro Dalcin 474855d1abb9SHong Zhang bi = merge->bi; 474955d1abb9SHong Zhang bj = merge->bj; 475055d1abb9SHong Zhang buf_ri = merge->buf_ri; 475155d1abb9SHong Zhang buf_rj = merge->buf_rj; 475255d1abb9SHong Zhang 47539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47547a2fc3feSBarry Smith owners = merge->rowmap->range; 475555d1abb9SHong Zhang len_s = merge->len_s; 475655d1abb9SHong Zhang 475755d1abb9SHong Zhang /* send and recv matrix values */ 47589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47599566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 476055d1abb9SHong Zhang 47619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 476255d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 476355d1abb9SHong Zhang if (!len_s[proc]) continue; 476455d1abb9SHong Zhang i = owners[proc]; 47659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 476655d1abb9SHong Zhang k++; 476755d1abb9SHong Zhang } 476855d1abb9SHong Zhang 47699566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47709566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47719566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 477255d1abb9SHong Zhang 47739566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47749566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 477555d1abb9SHong Zhang 477655d1abb9SHong Zhang /* insert mat values of mpimat */ 47779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47789566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 477955d1abb9SHong Zhang 478055d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 478155d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 478255d1abb9SHong Zhang nrows = *(buf_ri_k[k]); 478355d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4784a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 478555d1abb9SHong Zhang } 478655d1abb9SHong Zhang 478755d1abb9SHong Zhang /* set values of ba */ 47887a2fc3feSBarry Smith m = merge->rowmap->n; 478955d1abb9SHong Zhang for (i = 0; i < m; i++) { 479055d1abb9SHong Zhang arow = owners[rank] + i; 479155d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 479255d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47939566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 479455d1abb9SHong Zhang 479555d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 479655d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 479755d1abb9SHong Zhang aj = a->j + ai[arow]; 4798fff043a9SJunchao Zhang aa = a_a + ai[arow]; 479955d1abb9SHong Zhang nextaj = 0; 480055d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 480155d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 480255d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 480355d1abb9SHong Zhang } 480455d1abb9SHong Zhang } 480555d1abb9SHong Zhang 480655d1abb9SHong Zhang /* add received vals into ba */ 480755d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 480855d1abb9SHong Zhang /* i-th row */ 480955d1abb9SHong Zhang if (i == *nextrow[k]) { 481055d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 481155d1abb9SHong Zhang aj = buf_rj[k] + *(nextai[k]); 481255d1abb9SHong Zhang aa = abuf_r[k] + *(nextai[k]); 481355d1abb9SHong Zhang nextaj = 0; 481455d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 481555d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 481655d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 481755d1abb9SHong Zhang } 481855d1abb9SHong Zhang } 48199371c9d4SSatish Balay nextrow[k]++; 48209371c9d4SSatish Balay nextai[k]++; 482155d1abb9SHong Zhang } 482255d1abb9SHong Zhang } 48239566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 482455d1abb9SHong Zhang } 48259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48269566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48279566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 482855d1abb9SHong Zhang 48299566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48309566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48319566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48329566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48339566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 483555d1abb9SHong Zhang } 483638f152feSBarry Smith 4837d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4838d71ae5a4SJacob Faibussowitsch { 483955a3bba9SHong Zhang Mat B_mpi; 4840c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4841b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4842b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4843d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 4844a2f3521dSMark F. Adams PetscInt len, proc, *dnz, *onz, bs, cbs; 4845c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4846b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 484755d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 484858cb9c82SHong Zhang MPI_Status *status; 48490298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4850be0fcf8dSHong Zhang PetscBT lnkbt; 485151a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4852776b82aeSLisandro Dalcin PetscContainer container; 485302c68681SHong Zhang 4854e5f2cdd8SHong Zhang PetscFunctionBegin; 48559566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48563c2c1871SHong Zhang 485738f152feSBarry Smith /* make sure it is a PETSc comm */ 48589566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 486155d1abb9SHong Zhang 48629566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4864e5f2cdd8SHong Zhang 48656abd8857SHong Zhang /* determine row ownership */ 48669566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48679566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48689566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48709566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 487355d1abb9SHong Zhang 48747a2fc3feSBarry Smith m = merge->rowmap->n; 48757a2fc3feSBarry Smith owners = merge->rowmap->range; 48766abd8857SHong Zhang 48776abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48783e06a4e6SHong Zhang len_s = merge->len_s; 487951a7d1a8SHong Zhang 48802257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4881c2234fe3SHong Zhang merge->nsend = 0; 4882409913e3SHong Zhang for (proc = 0; proc < size; proc++) { 48832257cef7SHong Zhang len_si[proc] = 0; 48843e06a4e6SHong Zhang if (proc == rank) { 48856abd8857SHong Zhang len_s[proc] = 0; 48863e06a4e6SHong Zhang } else { 488702c68681SHong Zhang len_si[proc] = owners[proc + 1] - owners[proc] + 1; 48883e06a4e6SHong Zhang len_s[proc] = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */ 48893e06a4e6SHong Zhang } 48903e06a4e6SHong Zhang if (len_s[proc]) { 4891c2234fe3SHong Zhang merge->nsend++; 48922257cef7SHong Zhang nrows = 0; 48932257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48942257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48952257cef7SHong Zhang } 48962257cef7SHong Zhang len_si[proc] = 2 * (nrows + 1); 48972257cef7SHong Zhang len += len_si[proc]; 4898409913e3SHong Zhang } 489958cb9c82SHong Zhang } 4900409913e3SHong Zhang 49012257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 49029566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 49039566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4904671beff6SHong Zhang 49053e06a4e6SHong Zhang /* post the Irecv of j-structure */ 49069566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49079566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 490802c68681SHong Zhang 49093e06a4e6SHong Zhang /* post the Isend of j-structure */ 49109566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49113e06a4e6SHong Zhang 49122257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 4913409913e3SHong Zhang if (!len_s[proc]) continue; 491402c68681SHong Zhang i = owners[proc]; 49159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 491651a7d1a8SHong Zhang k++; 491751a7d1a8SHong Zhang } 491851a7d1a8SHong Zhang 49193e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49209566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49219566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 492202c68681SHong Zhang 492302c68681SHong Zhang /* send and recv i-structure */ 49249566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49259566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 492602c68681SHong Zhang 49279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49283e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49292257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 493002c68681SHong Zhang if (!len_s[proc]) continue; 49313e06a4e6SHong Zhang /* form outgoing message for i-structure: 49323e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49333e06a4e6SHong Zhang [1:nrows]: row index (global) 49343e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49353e06a4e6SHong Zhang */ 49362257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49373e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49383e06a4e6SHong Zhang buf_si[0] = nrows; 49393e06a4e6SHong Zhang buf_si_i[0] = 0; 49403e06a4e6SHong Zhang nrows = 0; 49413e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49423e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49433e06a4e6SHong Zhang if (anzi) { 49443e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49453e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49463e06a4e6SHong Zhang nrows++; 49473e06a4e6SHong Zhang } 49483e06a4e6SHong Zhang } 49499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 495002c68681SHong Zhang k++; 49512257cef7SHong Zhang buf_si += len_si[proc]; 495202c68681SHong Zhang } 49532257cef7SHong Zhang 49549566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49559566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 495602c68681SHong Zhang 49579566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 495848a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49593e06a4e6SHong Zhang 49609566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49619566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49629566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49639566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49649566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49659566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49669566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 496758cb9c82SHong Zhang 4968bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 496958cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 497158cb9c82SHong Zhang bi[0] = 0; 497258cb9c82SHong Zhang 4973be0fcf8dSHong Zhang /* create and initialize a linked list */ 4974be0fcf8dSHong Zhang nlnk = N + 1; 49759566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 497658cb9c82SHong Zhang 4977bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4978bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49799566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49802205254eSKarl Rupp 498158cb9c82SHong Zhang current_space = free_space; 498258cb9c82SHong Zhang 4983bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49849566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49851d79065fSBarry Smith 49863e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49872257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49883e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49893e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4990a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49913e06a4e6SHong Zhang } 49922257cef7SHong Zhang 4993d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4994bcc1bcd5SHong Zhang len = 0; 499558cb9c82SHong Zhang for (i = 0; i < m; i++) { 499658cb9c82SHong Zhang bnzi = 0; 499758cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 499858cb9c82SHong Zhang arow = owners[rank] + i; 499958cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 500058cb9c82SHong Zhang aj = a->j + ai[arow]; 50019566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 500258cb9c82SHong Zhang bnzi += nlnk; 500358cb9c82SHong Zhang /* add received col data into lnk */ 500451a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 500555d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 50063e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50073e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50089566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50093e06a4e6SHong Zhang bnzi += nlnk; 50109371c9d4SSatish Balay nextrow[k]++; 50119371c9d4SSatish Balay nextai[k]++; 50123e06a4e6SHong Zhang } 501358cb9c82SHong Zhang } 5014bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 501558cb9c82SHong Zhang 501658cb9c82SHong Zhang /* if free space is not available, make more free space */ 501748a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 501858cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50199566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50209566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5021bcc1bcd5SHong Zhang 502258cb9c82SHong Zhang current_space->array += bnzi; 502358cb9c82SHong Zhang current_space->local_used += bnzi; 502458cb9c82SHong Zhang current_space->local_remaining -= bnzi; 502558cb9c82SHong Zhang 502658cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 502758cb9c82SHong Zhang } 5028bcc1bcd5SHong Zhang 50299566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5030bcc1bcd5SHong Zhang 50319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50329566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50339566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5034409913e3SHong Zhang 5035bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50369566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50379566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 503854b84b50SHong Zhang if (n == PETSC_DECIDE) { 50399566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 504054b84b50SHong Zhang } else { 50419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 504254b84b50SHong Zhang } 50439566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50449566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50459566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5046d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50479566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 504858cb9c82SHong Zhang 504990431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50506abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5051affca5deSHong Zhang merge->bi = bi; 5052affca5deSHong Zhang merge->bj = bj; 505302c68681SHong Zhang merge->buf_ri = buf_ri; 505402c68681SHong Zhang merge->buf_rj = buf_rj; 50550298fd71SBarry Smith merge->coi = NULL; 50560298fd71SBarry Smith merge->coj = NULL; 50570298fd71SBarry Smith merge->owners_co = NULL; 5058affca5deSHong Zhang 50599566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5060bf0cc555SLisandro Dalcin 5061affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50629566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50639566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 50649566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50659566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50669566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5067affca5deSHong Zhang *mpimat = B_mpi; 506838f152feSBarry Smith 50699566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5071e5f2cdd8SHong Zhang } 507225616d81SHong Zhang 5073d4036a1aSHong Zhang /*@C 507411a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5075d4036a1aSHong Zhang matrices from each processor 5076d4036a1aSHong Zhang 5077d083f849SBarry Smith Collective 5078d4036a1aSHong Zhang 5079d4036a1aSHong Zhang Input Parameters: 5080d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5081d4036a1aSHong Zhang . seqmat - the input sequential matrices 508211a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 508311a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 508411a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5085d4036a1aSHong Zhang 5086d4036a1aSHong Zhang Output Parameter: 5087d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5088d4036a1aSHong Zhang 5089d4036a1aSHong Zhang Level: advanced 5090d4036a1aSHong Zhang 509111a5261eSBarry Smith Note: 5092d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5093d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 509411a5261eSBarry Smith destroyed when mpimat is destroyed. Call `PetscObjectQuery()` to access seqmat. 50952ef1f0ffSBarry Smith 50961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5097d4036a1aSHong Zhang @*/ 5098d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5099d71ae5a4SJacob Faibussowitsch { 51007e63b356SHong Zhang PetscMPIInt size; 510155d1abb9SHong Zhang 510255d1abb9SHong Zhang PetscFunctionBegin; 51039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 51047e63b356SHong Zhang if (size == 1) { 51059566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 51067e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51079566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51087e63b356SHong Zhang } else { 51099566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51107e63b356SHong Zhang } 51119566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51137e63b356SHong Zhang } 51149566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 511548a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51169566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51179566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 511955d1abb9SHong Zhang } 51204ebed01fSBarry Smith 5121bc08b0f1SBarry Smith /*@ 51222920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51238a9c020eSBarry Smith 51248a9c020eSBarry Smith Not Collective 51258a9c020eSBarry Smith 51262fe279fdSBarry Smith Input Parameter: 512720f4b53cSBarry Smith . A - the matrix 51288a9c020eSBarry Smith 51298a9c020eSBarry Smith Output Parameter: 51308a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51318a9c020eSBarry Smith 51328a9c020eSBarry Smith Level: developer 51338a9c020eSBarry Smith 51348a9c020eSBarry Smith Notes: 51352920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51362920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51372920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51382920cce0SJacob Faibussowitsch 513911a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51408a9c020eSBarry Smith 51412920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51422920cce0SJacob Faibussowitsch 514311a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51448a9c020eSBarry Smith 51451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51468a9c020eSBarry Smith @*/ 5147d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5148d71ae5a4SJacob Faibussowitsch { 51498a9c020eSBarry Smith PetscBool mpi; 51508a9c020eSBarry Smith 51518a9c020eSBarry Smith PetscFunctionBegin; 51528a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51538a9c020eSBarry Smith if (mpi) { 51548a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51558a9c020eSBarry Smith } else { 51568a9c020eSBarry Smith *A_loc = A; 51578a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51588a9c020eSBarry Smith } 51593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51608a9c020eSBarry Smith } 51618a9c020eSBarry Smith 51628a9c020eSBarry Smith /*@ 51632920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 516425616d81SHong Zhang 516532fba14fSHong Zhang Not Collective 516625616d81SHong Zhang 516725616d81SHong Zhang Input Parameters: 516825616d81SHong Zhang + A - the matrix 516911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 517025616d81SHong Zhang 517125616d81SHong Zhang Output Parameter: 517225616d81SHong Zhang . A_loc - the local sequential matrix generated 517325616d81SHong Zhang 517425616d81SHong Zhang Level: developer 517525616d81SHong Zhang 517677c65a98SStefano Zampini Notes: 51772920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51782920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51792920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51802920cce0SJacob Faibussowitsch 518111a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51828a9c020eSBarry Smith 51832920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51842920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51852920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51862920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 518777c65a98SStefano Zampini 51881cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 518925616d81SHong Zhang @*/ 5190d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5191d71ae5a4SJacob Faibussowitsch { 519201b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5193b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5194b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5195ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5196ce496241SStefano Zampini PetscScalar *ca, *cam; 519777c65a98SStefano Zampini PetscMPIInt size; 5198d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51995a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 52008661ff28SBarry Smith PetscBool match; 520125616d81SHong Zhang 520225616d81SHong Zhang PetscFunctionBegin; 52039566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 520428b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 52059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 520677c65a98SStefano Zampini if (size == 1) { 520777c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52089566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 520977c65a98SStefano Zampini *A_loc = mpimat->A; 521077c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52119566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 521277c65a98SStefano Zampini } 52133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 521477c65a98SStefano Zampini } 521570a9ba44SHong Zhang 52169566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5217b78526a6SJose E. Roman a = (Mat_SeqAIJ *)(mpimat->A)->data; 5218b78526a6SJose E. Roman b = (Mat_SeqAIJ *)(mpimat->B)->data; 52199371c9d4SSatish Balay ai = a->i; 52209371c9d4SSatish Balay aj = a->j; 52219371c9d4SSatish Balay bi = b->i; 52229371c9d4SSatish Balay bj = b->j; 52239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5225ce496241SStefano Zampini aa = aav; 5226ce496241SStefano Zampini ba = bav; 522701b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5229dea91ad1SHong Zhang ci[0] = 0; 5230ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5233dea91ad1SHong Zhang k = 0; 523401b7ae99SHong Zhang for (i = 0; i < am; i++) { 52355a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52365a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 523701b7ae99SHong Zhang /* off-diagonal portion of A */ 52385a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52395a7d977cSHong Zhang col = cmap[*bj]; 52405a7d977cSHong Zhang if (col >= cstart) break; 52419371c9d4SSatish Balay cj[k] = col; 52429371c9d4SSatish Balay bj++; 52435a7d977cSHong Zhang ca[k++] = *ba++; 52445a7d977cSHong Zhang } 52455a7d977cSHong Zhang /* diagonal portion of A */ 52465a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52475a7d977cSHong Zhang cj[k] = cstart + *aj++; 52485a7d977cSHong Zhang ca[k++] = *aa++; 52495a7d977cSHong Zhang } 52505a7d977cSHong Zhang /* off-diagonal portion of A */ 52515a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52525a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52535a7d977cSHong Zhang ca[k++] = *ba++; 52545a7d977cSHong Zhang } 525525616d81SHong Zhang } 5256dea91ad1SHong Zhang /* put together the new matrix */ 52579566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5258dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5259dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5260dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5261e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5262e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5263dea91ad1SHong Zhang mat->nonew = 0; 52645a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52655a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5266fff043a9SJunchao Zhang ci = mat->i; 5267fff043a9SJunchao Zhang cj = mat->j; 52689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52695a7d977cSHong Zhang for (i = 0; i < am; i++) { 52705a7d977cSHong Zhang /* off-diagonal portion of A */ 52715a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52725a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52735a7d977cSHong Zhang col = cmap[*bj]; 52745a7d977cSHong Zhang if (col >= cstart) break; 52759371c9d4SSatish Balay *cam++ = *ba++; 52769371c9d4SSatish Balay bj++; 52775a7d977cSHong Zhang } 52785a7d977cSHong Zhang /* diagonal portion of A */ 5279ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5280a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52815a7d977cSHong Zhang /* off-diagonal portion of A */ 5282f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52839371c9d4SSatish Balay *cam++ = *ba++; 52849371c9d4SSatish Balay bj++; 5285f33d1a9aSHong Zhang } 52865a7d977cSHong Zhang } 52879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 528898921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52919566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 529325616d81SHong Zhang } 529425616d81SHong Zhang 5295ed502f03SStefano Zampini /*@ 529611a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52974cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5298ed502f03SStefano Zampini 5299ed502f03SStefano Zampini Not Collective 5300ed502f03SStefano Zampini 5301ed502f03SStefano Zampini Input Parameters: 5302ed502f03SStefano Zampini + A - the matrix 530311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5304ed502f03SStefano Zampini 5305d8d19677SJose E. Roman Output Parameters: 53062ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5307ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5308ed502f03SStefano Zampini 5309ed502f03SStefano Zampini Level: developer 5310ed502f03SStefano Zampini 531111a5261eSBarry Smith Note: 53122ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53134cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5314ed502f03SStefano Zampini 53151cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5316ed502f03SStefano Zampini @*/ 5317d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5318d71ae5a4SJacob Faibussowitsch { 5319ed502f03SStefano Zampini Mat Ao, Ad; 5320ed502f03SStefano Zampini const PetscInt *cmap; 5321ed502f03SStefano Zampini PetscMPIInt size; 5322ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5323ed502f03SStefano Zampini 5324ed502f03SStefano Zampini PetscFunctionBegin; 53259566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5327ed502f03SStefano Zampini if (size == 1) { 5328ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53299566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5330ed502f03SStefano Zampini *A_loc = Ad; 5331ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53329566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5333ed502f03SStefano Zampini } 53349566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5336ed502f03SStefano Zampini } 53379566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53389566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5339ed502f03SStefano Zampini if (f) { 53409566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5341ed502f03SStefano Zampini } else { 5342ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5343ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5344ed502f03SStefano Zampini Mat_SeqAIJ *c; 5345ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5346ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5347ed502f03SStefano Zampini PetscInt *ci, *cj; 5348ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5349ed502f03SStefano Zampini PetscScalar *ca; 5350ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5351ed502f03SStefano Zampini 53529566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53539566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5356ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5357ed502f03SStefano Zampini PetscInt k; 53589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5361ed502f03SStefano Zampini ci[0] = 0; 5362ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5363ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5364ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5365ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5366ed502f03SStefano Zampini /* diagonal portion of A */ 5367ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5368ed502f03SStefano Zampini cj[k] = *aj++; 5369ed502f03SStefano Zampini ca[k] = *aa++; 5370ed502f03SStefano Zampini } 5371ed502f03SStefano Zampini /* off-diagonal portion of A */ 5372ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5373ed502f03SStefano Zampini cj[k] = dn + *bj++; 5374ed502f03SStefano Zampini ca[k] = *ba++; 5375ed502f03SStefano Zampini } 5376ed502f03SStefano Zampini } 5377ed502f03SStefano Zampini /* put together the new matrix */ 53789566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5379ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5380ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5381ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5382ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5383ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5384ed502f03SStefano Zampini c->nonew = 0; 53859566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5386ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5388ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5389ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5390ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5391ed502f03SStefano Zampini /* diagonal portion of A */ 5392ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5393ed502f03SStefano Zampini /* off-diagonal portion of A */ 5394ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5395ed502f03SStefano Zampini } 53969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 539798921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5400ed502f03SStefano Zampini if (glob) { 5401ed502f03SStefano Zampini PetscInt cst, *gidx; 5402ed502f03SStefano Zampini 54039566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 54049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5405ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5406ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54079566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5408ed502f03SStefano Zampini } 5409ed502f03SStefano Zampini } 54109566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5412ed502f03SStefano Zampini } 5413ed502f03SStefano Zampini 541432fba14fSHong Zhang /*@C 541511a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 541632fba14fSHong Zhang 541732fba14fSHong Zhang Not Collective 541832fba14fSHong Zhang 541932fba14fSHong Zhang Input Parameters: 542032fba14fSHong Zhang + A - the matrix 542111a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 542220f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 542320f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 542432fba14fSHong Zhang 542532fba14fSHong Zhang Output Parameter: 542632fba14fSHong Zhang . A_loc - the local sequential matrix generated 542732fba14fSHong Zhang 542832fba14fSHong Zhang Level: developer 542932fba14fSHong Zhang 54301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 543132fba14fSHong Zhang @*/ 5432d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5433d71ae5a4SJacob Faibussowitsch { 543432fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 543532fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 543632fba14fSHong Zhang IS isrowa, iscola; 543732fba14fSHong Zhang Mat *aloc; 54384a2b5492SBarry Smith PetscBool match; 543932fba14fSHong Zhang 544032fba14fSHong Zhang PetscFunctionBegin; 54419566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 544228b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54439566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 544432fba14fSHong Zhang if (!row) { 54459371c9d4SSatish Balay start = A->rmap->rstart; 54469371c9d4SSatish Balay end = A->rmap->rend; 54479566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 544832fba14fSHong Zhang } else { 544932fba14fSHong Zhang isrowa = *row; 545032fba14fSHong Zhang } 545132fba14fSHong Zhang if (!col) { 5452d0f46423SBarry Smith start = A->cmap->rstart; 545332fba14fSHong Zhang cmap = a->garray; 5454d0f46423SBarry Smith nzA = a->A->cmap->n; 5455d0f46423SBarry Smith nzB = a->B->cmap->n; 54569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 545732fba14fSHong Zhang ncols = 0; 545832fba14fSHong Zhang for (i = 0; i < nzB; i++) { 545932fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 546032fba14fSHong Zhang else break; 546132fba14fSHong Zhang } 546232fba14fSHong Zhang imark = i; 546332fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 546432fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54659566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 546632fba14fSHong Zhang } else { 546732fba14fSHong Zhang iscola = *col; 546832fba14fSHong Zhang } 546932fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 547132fba14fSHong Zhang aloc[0] = *A_loc; 547232fba14fSHong Zhang } 54739566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5474109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54759566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5476109e0772SStefano Zampini } 547732fba14fSHong Zhang *A_loc = aloc[0]; 54789566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 547948a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 548048a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54819566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548332fba14fSHong Zhang } 548432fba14fSHong Zhang 54855c65b9ecSFande Kong /* 54865c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54875c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54885c65b9ecSFande Kong * on a global size. 54895c65b9ecSFande Kong * */ 5490ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5491d71ae5a4SJacob Faibussowitsch { 54925c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 54935c65b9ecSFande Kong Mat_SeqAIJ *pd = (Mat_SeqAIJ *)(p->A)->data, *po = (Mat_SeqAIJ *)(p->B)->data, *p_oth; 5494131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5495131c27b5Sprj- PetscMPIInt owner; 54965c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54975c65b9ecSFande Kong const PetscInt *lrowindices; 54985c65b9ecSFande Kong PetscSF sf, osf; 54995c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 55005c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 55015c65b9ecSFande Kong MPI_Comm comm; 55025c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5503fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 55045c65b9ecSFande Kong 55055c65b9ecSFande Kong PetscFunctionBegin; 55069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55075c65b9ecSFande Kong /* plocalsize is the number of roots 55085c65b9ecSFande Kong * nrows is the number of leaves 55095c65b9ecSFande Kong * */ 55109566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55119566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55145c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55155c65b9ecSFande Kong /* Find a remote index and an owner for a row 55165c65b9ecSFande Kong * The row could be local or remote 55175c65b9ecSFande Kong * */ 551834bcad68SFande Kong owner = 0; 551934bcad68SFande Kong lidx = 0; 55209566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55215c65b9ecSFande Kong iremote[i].index = lidx; 55225c65b9ecSFande Kong iremote[i].rank = owner; 55235c65b9ecSFande Kong } 55245c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55259566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5526f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55275c65b9ecSFande Kong * offsets 55285c65b9ecSFande Kong * */ 55299566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55309566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55319566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5532bc8e477aSFande Kong 55339566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55349566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55359566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55365c65b9ecSFande Kong roffsets[0] = 0; 55375c65b9ecSFande Kong roffsets[1] = 0; 55385c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55394cf0e950SBarry Smith /* diagonal */ 55405c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55414cf0e950SBarry Smith /* off-diagonal */ 55425c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55435c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55445c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55455c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55465c65b9ecSFande Kong } 55479566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55489566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55495c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55509566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55519566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55539566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55549566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55559566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55569566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55575c65b9ecSFande Kong dntotalcols = 0; 55585c65b9ecSFande Kong ontotalcols = 0; 5559bc8e477aSFande Kong ncol = 0; 55605c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55615c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5562bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55634cf0e950SBarry Smith /* diagonal */ 55645c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55654cf0e950SBarry Smith /* off-diagonal */ 55665c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55675c65b9ecSFande Kong } 55685c65b9ecSFande Kong /* We do not need to figure the right number of columns 55695c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55705c65b9ecSFande Kong * */ 55719566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55729566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55739566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55745c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55754cf0e950SBarry Smith /* diagonal */ 55769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55774cf0e950SBarry Smith /* off-diagonal */ 55789566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55794cf0e950SBarry Smith /* diagonal */ 55809566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55814cf0e950SBarry Smith /* off-diagonal */ 55829566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55835c65b9ecSFande Kong dntotalcols = 0; 55845c65b9ecSFande Kong ontotalcols = 0; 55855c65b9ecSFande Kong ntotalcols = 0; 55865c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 558734bcad68SFande Kong owner = 0; 55889566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55895c65b9ecSFande Kong /* Set iremote for diag matrix */ 55905c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55915c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55925c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55935c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55945c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55955c65b9ecSFande Kong } 55964cf0e950SBarry Smith /* off-diagonal */ 55975c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55985c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55995c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 56005c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 56015c65b9ecSFande Kong } 56025c65b9ecSFande Kong } 56039566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 56049566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 56059566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 56069566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56075c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56085c65b9ecSFande Kong * Diag matrix 56095c65b9ecSFande Kong * */ 56109566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56119566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56129566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56135c65b9ecSFande Kong 56149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56154cf0e950SBarry Smith /* off-diagonal */ 56169566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56179566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56189566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56214cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56249566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56255c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56265c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56279566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56285c65b9ecSFande Kong /* We want P_oth store global indices */ 56299566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56305c65b9ecSFande Kong /* Use memory scalable approach */ 56319566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56329566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56339566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56349566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56355c65b9ecSFande Kong /* Convert back to local indices */ 56365c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56379566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56385c65b9ecSFande Kong nout = 0; 56399566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 564008401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56419566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56425c65b9ecSFande Kong /* Exchange values */ 56439566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56449566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56475c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56485c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56499566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56509566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56515c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56529566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56539566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56549566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56559566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56575c65b9ecSFande Kong } 56585c65b9ecSFande Kong 56595c65b9ecSFande Kong /* 56605c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56615c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56625c65b9ecSFande Kong * */ 5663d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5664d71ae5a4SJacob Faibussowitsch { 56655c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5666bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5667bc8e477aSFande Kong IS rows, map; 5668bc8e477aSFande Kong PetscHMapI hamp; 5669bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56705c65b9ecSFande Kong MPI_Comm comm; 56715c65b9ecSFande Kong PetscSF sf, osf; 5672bc8e477aSFande Kong PetscBool has; 56735c65b9ecSFande Kong 56745c65b9ecSFande Kong PetscFunctionBegin; 56759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56769566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56775c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56785c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56795c65b9ecSFande Kong * */ 56805c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56815c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5682eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56839566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5684bc8e477aSFande Kong count = 0; 5685bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5686bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5687bc8e477aSFande Kong key = a->garray[i] / dof; 56889566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5689bc8e477aSFande Kong if (!has) { 5690bc8e477aSFande Kong mapping[i] = count; 56919566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5692bc8e477aSFande Kong } else { 5693bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5694bc8e477aSFande Kong mapping[i] = count - 1; 56955c65b9ecSFande Kong } 5696bc8e477aSFande Kong } 56979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56989566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5699eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 57009566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 57015c65b9ecSFande Kong off = 0; 57029566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 57039566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 57049566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 57059566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 57065c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57079566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57089566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57099566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57109566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57119566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57125c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57135c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 571435cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5715fff043a9SJunchao Zhang */ 5716fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5717fff043a9SJunchao Zhang 57189566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57199566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 572008401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57215c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57225c65b9ecSFande Kong /* Update values in place */ 57239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57259566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57269566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57279566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57289566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57316718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57329566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57345c65b9ecSFande Kong } 57355c65b9ecSFande Kong 573625616d81SHong Zhang /*@C 573720f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 573825616d81SHong Zhang 5739c3339decSBarry Smith Collective 574025616d81SHong Zhang 574125616d81SHong Zhang Input Parameters: 574211a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 574311a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 574411a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 574525616d81SHong Zhang 5746f1a722f8SMatthew G. Knepley Output Parameters: 574727430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 574827430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5749f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 575025616d81SHong Zhang 575125616d81SHong Zhang Level: developer 575225616d81SHong Zhang 575320f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 575425616d81SHong Zhang @*/ 5755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5756d71ae5a4SJacob Faibussowitsch { 5757899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5758b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 575925616d81SHong Zhang IS isrowb, iscolb; 57600298fd71SBarry Smith Mat *bseq = NULL; 576125616d81SHong Zhang 576225616d81SHong Zhang PetscFunctionBegin; 576320f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 576420f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57659566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 576625616d81SHong Zhang 576725616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5768d0f46423SBarry Smith start = A->cmap->rstart; 576925616d81SHong Zhang cmap = a->garray; 5770d0f46423SBarry Smith nzA = a->A->cmap->n; 5771d0f46423SBarry Smith nzB = a->B->cmap->n; 57729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 577325616d81SHong Zhang ncols = 0; 57740390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 577525616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 577625616d81SHong Zhang else break; 577725616d81SHong Zhang } 577825616d81SHong Zhang imark = i; 57790390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57800390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57819566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57829566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 578325616d81SHong Zhang } else { 578408401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57859371c9d4SSatish Balay isrowb = *rowb; 57869371c9d4SSatish Balay iscolb = *colb; 57879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 578825616d81SHong Zhang bseq[0] = *B_seq; 578925616d81SHong Zhang } 57909566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 579125616d81SHong Zhang *B_seq = bseq[0]; 57929566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 579325616d81SHong Zhang if (!rowb) { 57949566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 579525616d81SHong Zhang } else { 579625616d81SHong Zhang *rowb = isrowb; 579725616d81SHong Zhang } 579825616d81SHong Zhang if (!colb) { 57999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 580025616d81SHong Zhang } else { 580125616d81SHong Zhang *colb = iscolb; 580225616d81SHong Zhang } 58039566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 58043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 580525616d81SHong Zhang } 5806429d309bSHong Zhang 5807f8487c73SHong Zhang /* 580827430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 580901b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5810429d309bSHong Zhang 5811c3339decSBarry Smith Collective 5812429d309bSHong Zhang 5813429d309bSHong Zhang Input Parameters: 581427430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 581527430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5816429d309bSHong Zhang 5817429d309bSHong Zhang Output Parameter: 58180298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58190298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58200298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5821598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5822429d309bSHong Zhang 582311a5261eSBarry Smith Developer Note: 582411a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58256eb45d04SBarry Smith for this matrix. This is not desirable.. 58266eb45d04SBarry Smith 5827429d309bSHong Zhang Level: developer 5828429d309bSHong Zhang 5829f8487c73SHong Zhang */ 5830d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5831d71ae5a4SJacob Faibussowitsch { 5832899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 583387025532SHong Zhang Mat_SeqAIJ *b_oth; 58344b8d542aSHong Zhang VecScatter ctx; 5835ce94432eSBarry Smith MPI_Comm comm; 58363515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58373515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5838277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 5839f4259b30SLisandro Dalcin PetscInt i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len; 5840277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5841ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5842ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5843429d309bSHong Zhang 5844429d309bSHong Zhang PetscFunctionBegin; 58459566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5847a7c7454dSHong Zhang 584820f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 584920f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58509566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5852a6b2eed2SHong Zhang 5853ec07b8f8SHong Zhang if (size == 1) { 5854ec07b8f8SHong Zhang startsj_s = NULL; 5855ec07b8f8SHong Zhang bufa_ptr = NULL; 585652f7967eSHong Zhang *B_oth = NULL; 58573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5858ec07b8f8SHong Zhang } 5859ec07b8f8SHong Zhang 5860fa83eaafSHong Zhang ctx = a->Mvctx; 58614b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58624b8d542aSHong Zhang 58639566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58643515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58659566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58669566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5868ddea5d60SJunchao Zhang rwaits = reqs; 58698e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5870429d309bSHong Zhang 5871b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5872429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5873a6b2eed2SHong Zhang /* i-array */ 5874a6b2eed2SHong Zhang /* post receives */ 58759566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5876a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 587774268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5878e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5880429d309bSHong Zhang } 5881a6b2eed2SHong Zhang 5882a6b2eed2SHong Zhang /* pack the outgoing message */ 58839566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58842205254eSKarl Rupp 58852205254eSKarl Rupp sstartsj[0] = 0; 58862205254eSKarl Rupp rstartsj[0] = 0; 5887a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58883515ee7fSJunchao Zhang if (nsends) { 58893515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58913515ee7fSJunchao Zhang } 5892a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58933515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5894e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 589587025532SHong Zhang for (j = 0; j < nrows; j++) { 5896d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5897e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 58989566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 58992205254eSKarl Rupp 5900e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 59012205254eSKarl Rupp 5902e42f35eeSHong Zhang len += ncols; 59039566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5904e42f35eeSHong Zhang } 5905a6b2eed2SHong Zhang k++; 5906429d309bSHong Zhang } 59079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59082205254eSKarl Rupp 5909dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5910429d309bSHong Zhang } 591187025532SHong Zhang /* recvs and sends of i-array are completed */ 59129566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59139566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5914e42f35eeSHong Zhang 5915a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5918a6b2eed2SHong Zhang 591987025532SHong Zhang /* create i-array of B_oth */ 59209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59212205254eSKarl Rupp 592287025532SHong Zhang b_othi[0] = 0; 5923a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5924a6b2eed2SHong Zhang k = 0; 5925a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59263515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59273515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 592887025532SHong Zhang for (j = 0; j < nrows; j++) { 592987025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59309566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5931f91af8c7SBarry Smith k++; 5932a6b2eed2SHong Zhang } 5933dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5934a6b2eed2SHong Zhang } 59359566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5936a6b2eed2SHong Zhang 59376aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5940a6b2eed2SHong Zhang 594187025532SHong Zhang /* j-array */ 5942a6b2eed2SHong Zhang /* post receives of j-array */ 5943a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 594487025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5946a6b2eed2SHong Zhang } 5947e42f35eeSHong Zhang 5948e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59493515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5950a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5951e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5952a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 595387025532SHong Zhang for (j = 0; j < nrows; j++) { 5954d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5955e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59569566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5957ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59589566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5959e42f35eeSHong Zhang } 596087025532SHong Zhang } 59619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 596287025532SHong Zhang } 596387025532SHong Zhang 596487025532SHong Zhang /* recvs and sends of j-array are completed */ 59659566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 596687025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5967b7f45c76SHong Zhang sstartsj = *startsj_s; 59681d79065fSBarry Smith rstartsj = *startsj_r; 596987025532SHong Zhang bufa = *bufa_ptr; 597087025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 59719566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5972ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 597387025532SHong Zhang 597487025532SHong Zhang /* a-array */ 597587025532SHong Zhang /* post receives of a-array */ 597687025532SHong Zhang for (i = 0; i < nrecvs; i++) { 597787025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 597987025532SHong Zhang } 5980e42f35eeSHong Zhang 5981e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59823515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 598387025532SHong Zhang for (i = 0; i < nsends; i++) { 5984e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 598587025532SHong Zhang bufA = bufa + sstartsj[i]; 598687025532SHong Zhang for (j = 0; j < nrows; j++) { 5987d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5988e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59899566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5990ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59919566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5992e42f35eeSHong Zhang } 5993a6b2eed2SHong Zhang } 59949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5995a6b2eed2SHong Zhang } 599687025532SHong Zhang /* recvs and sends of a-array are completed */ 59979566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59989566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 5999a6b2eed2SHong Zhang 600087025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 6001a6b2eed2SHong Zhang /* put together the new matrix */ 60029566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 6003a6b2eed2SHong Zhang 6004a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6005a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 600687025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6007e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6008e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 600987025532SHong Zhang b_oth->nonew = 0; 6010a6b2eed2SHong Zhang 60119566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6012b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60139566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60149566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6015dea91ad1SHong Zhang } else { 6016b7f45c76SHong Zhang *startsj_s = sstartsj; 60171d79065fSBarry Smith *startsj_r = rstartsj; 601887025532SHong Zhang *bufa_ptr = bufa; 601987025532SHong Zhang } 6020fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6022dea91ad1SHong Zhang } 60233515ee7fSJunchao Zhang 60249566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60259566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60269566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6028429d309bSHong Zhang } 6029ccd8e176SBarry Smith 6030cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6031cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6032ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60339779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6034a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6035191b95cbSRichard Tran Mills #endif 6036ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6037cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60385d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6039cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60405d7652ecSHong Zhang #endif 6041d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6042d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6043d24d4204SJose E. Roman #endif 604463c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 604563c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 604663c07aadSStefano Zampini #endif 60473338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60483338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60493338378cSStefano Zampini #endif 6050d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6051d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6052d5e393b6SSuyash Tandon #endif 60533d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60543d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60553d0639e7SStefano Zampini #endif 6056d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60574222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60584222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 605917667f90SBarry Smith 6060fc4dec0aSBarry Smith /* 6061fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6062fc4dec0aSBarry Smith 6063fc4dec0aSBarry Smith n p p 60642da392ccSBarry Smith [ ] [ ] [ ] 60652da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60662da392ccSBarry Smith [ ] [ ] [ ] 6067fc4dec0aSBarry Smith 6068fc4dec0aSBarry Smith */ 6069d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6070d71ae5a4SJacob Faibussowitsch { 6071fc4dec0aSBarry Smith Mat At, Bt, Ct; 6072fc4dec0aSBarry Smith 6073fc4dec0aSBarry Smith PetscFunctionBegin; 60749566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60759566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 60769566063dSJacob Faibussowitsch PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct)); 60779566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60797fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60809566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60819566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6083fc4dec0aSBarry Smith } 6084fc4dec0aSBarry Smith 6085d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6086d71ae5a4SJacob Faibussowitsch { 60876718818eSStefano Zampini PetscBool cisdense; 6088fc4dec0aSBarry Smith 6089fc4dec0aSBarry Smith PetscFunctionBegin; 609008401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60919566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60929566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6093d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 609448a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60959566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6096f75ecaa4SHong Zhang 60974222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 60983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6099fc4dec0aSBarry Smith } 6100fc4dec0aSBarry Smith 6101d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6102d71ae5a4SJacob Faibussowitsch { 61034222ddf1SHong Zhang Mat_Product *product = C->product; 61044222ddf1SHong Zhang Mat A = product->A, B = product->B; 6105fc4dec0aSBarry Smith 6106fc4dec0aSBarry Smith PetscFunctionBegin; 610720f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 610820f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61094222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61104222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6112fc4dec0aSBarry Smith } 6113fc4dec0aSBarry Smith 6114d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6115d71ae5a4SJacob Faibussowitsch { 61164222ddf1SHong Zhang Mat_Product *product = C->product; 61174222ddf1SHong Zhang 61184222ddf1SHong Zhang PetscFunctionBegin; 611948a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61214222ddf1SHong Zhang } 6122394ed5ebSJunchao Zhang 612327430b45SBarry Smith /* 612427430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6125394ed5ebSJunchao Zhang 6126394ed5ebSJunchao Zhang Input Parameters: 6127394ed5ebSJunchao Zhang 6128651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6129651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6130394ed5ebSJunchao Zhang 6131158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6132394ed5ebSJunchao Zhang 6133394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6134394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6135394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6136394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6137394ed5ebSJunchao Zhang 6138394ed5ebSJunchao Zhang Similar for Set2. 6139394ed5ebSJunchao Zhang 6140394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6141394ed5ebSJunchao Zhang 6142158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6143394ed5ebSJunchao Zhang 6144394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6145394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6146394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6147394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6148394ed5ebSJunchao Zhang */ 6149d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6150d71ae5a4SJacob Faibussowitsch { 6151394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6152394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6153394ed5ebSJunchao Zhang 6154394ed5ebSJunchao Zhang PetscFunctionBegin; 61559566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6156394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6157394ed5ebSJunchao Zhang i[0] = 0; 6158394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6159394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6160394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6161394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6162394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6163394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6164394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6165394ed5ebSJunchao Zhang j[t] = j1[b1]; 6166394ed5ebSJunchao Zhang imap1[t1] = t; 6167394ed5ebSJunchao Zhang imap2[t2] = t; 6168394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6169394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61709371c9d4SSatish Balay t1++; 61719371c9d4SSatish Balay t2++; 61729371c9d4SSatish Balay t++; 6173394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6174394ed5ebSJunchao Zhang j[t] = j1[b1]; 6175394ed5ebSJunchao Zhang imap1[t1] = t; 6176394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61779371c9d4SSatish Balay t1++; 61789371c9d4SSatish Balay t++; 6179394ed5ebSJunchao Zhang } else { 6180394ed5ebSJunchao Zhang j[t] = j2[b2]; 6181394ed5ebSJunchao Zhang imap2[t2] = t; 6182394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61839371c9d4SSatish Balay t2++; 61849371c9d4SSatish Balay t++; 6185394ed5ebSJunchao Zhang } 6186394ed5ebSJunchao Zhang } 6187394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6188394ed5ebSJunchao Zhang while (b1 < e1) { 6189394ed5ebSJunchao Zhang j[t] = j1[b1]; 6190394ed5ebSJunchao Zhang imap1[t1] = t; 6191394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61929371c9d4SSatish Balay t1++; 61939371c9d4SSatish Balay t++; 6194394ed5ebSJunchao Zhang } 6195394ed5ebSJunchao Zhang while (b2 < e2) { 6196394ed5ebSJunchao Zhang j[t] = j2[b2]; 6197394ed5ebSJunchao Zhang imap2[t2] = t; 6198394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61999371c9d4SSatish Balay t2++; 62009371c9d4SSatish Balay t++; 6201394ed5ebSJunchao Zhang } 6202394ed5ebSJunchao Zhang i[r + 1] = t; 6203394ed5ebSJunchao Zhang } 62043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6205394ed5ebSJunchao Zhang } 6206394ed5ebSJunchao Zhang 620727430b45SBarry Smith /* 620827430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6209394ed5ebSJunchao Zhang 6210394ed5ebSJunchao Zhang Input Parameters: 6211394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6212394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6213394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6214394ed5ebSJunchao Zhang 6215394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6216394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6217394ed5ebSJunchao Zhang 6218394ed5ebSJunchao Zhang Output Parameters: 6219394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6220394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6221394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6222394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6223394ed5ebSJunchao Zhang 6224394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6225158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6226158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6227394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6228394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6229394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6230394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6231394ed5ebSJunchao Zhang 6232394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6233394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6234394ed5ebSJunchao Zhang 6235394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6236394ed5ebSJunchao Zhang 6237158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6238394ed5ebSJunchao Zhang */ 6239d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6240d71ae5a4SJacob Faibussowitsch { 6241394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6242394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6243394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6244394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6245394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6246394ed5ebSJunchao Zhang 6247394ed5ebSJunchao Zhang PetscFunctionBegin; 62489566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62499566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6250394ed5ebSJunchao Zhang m = rend - rstart; 6251394ed5ebSJunchao Zhang 6252651b1cf9SStefano Zampini /* Skip negative rows */ 6253651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62549371c9d4SSatish Balay if (i[k] >= 0) break; 6255394ed5ebSJunchao Zhang 6256394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6257394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6258394ed5ebSJunchao Zhang */ 6259394ed5ebSJunchao Zhang while (k < n) { 6260394ed5ebSJunchao Zhang row = i[k]; 6261394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62629371c9d4SSatish Balay for (s = k; s < n; s++) 62639371c9d4SSatish Balay if (i[s] != row) break; 6264651b1cf9SStefano Zampini 6265651b1cf9SStefano Zampini /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */ 6266394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 6267651b1cf9SStefano Zampini if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT; 626854c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6269394ed5ebSJunchao Zhang } 62709566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6271158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6272394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6273394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6274394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6275394ed5ebSJunchao Zhang 6276394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6277394ed5ebSJunchao Zhang Atot += mid - k; 6278394ed5ebSJunchao Zhang Btot += s - mid; 6279394ed5ebSJunchao Zhang 6280651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6281394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6282394ed5ebSJunchao Zhang col = j[p]; 62839371c9d4SSatish Balay do { 6284651b1cf9SStefano Zampini j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */ 62859371c9d4SSatish Balay p++; 6286651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6287394ed5ebSJunchao Zhang Annz++; 6288394ed5ebSJunchao Zhang } 6289394ed5ebSJunchao Zhang 6290651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6291394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6292394ed5ebSJunchao Zhang col = j[p]; 6293d71ae5a4SJacob Faibussowitsch do { 6294d71ae5a4SJacob Faibussowitsch p++; 6295d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6296394ed5ebSJunchao Zhang Bnnz++; 6297394ed5ebSJunchao Zhang } 6298394ed5ebSJunchao Zhang k = s; 6299394ed5ebSJunchao Zhang } 6300394ed5ebSJunchao Zhang 6301394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6302158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6303158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6304158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6305158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6306394ed5ebSJunchao Zhang 63076aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6308394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6309394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6310394ed5ebSJunchao Zhang k = rowBegin[r]; 6311394ed5ebSJunchao Zhang mid = rowMid[r]; 6312394ed5ebSJunchao Zhang s = rowEnd[r]; 63138e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63148e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6315394ed5ebSJunchao Zhang Atot += mid - k; 6316394ed5ebSJunchao Zhang Btot += s - mid; 6317394ed5ebSJunchao Zhang 6318394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6319394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6320394ed5ebSJunchao Zhang col = j[p]; 6321394ed5ebSJunchao Zhang q = p; 6322d71ae5a4SJacob Faibussowitsch do { 6323d71ae5a4SJacob Faibussowitsch p++; 6324d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6325394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6326394ed5ebSJunchao Zhang Annz++; 6327394ed5ebSJunchao Zhang } 6328394ed5ebSJunchao Zhang 6329394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6330394ed5ebSJunchao Zhang col = j[p]; 6331394ed5ebSJunchao Zhang q = p; 6332d71ae5a4SJacob Faibussowitsch do { 6333d71ae5a4SJacob Faibussowitsch p++; 6334d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6335394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6336394ed5ebSJunchao Zhang Bnnz++; 6337394ed5ebSJunchao Zhang } 6338394ed5ebSJunchao Zhang } 6339394ed5ebSJunchao Zhang /* Output */ 6340394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6341394ed5ebSJunchao Zhang *Annz_ = Annz; 6342394ed5ebSJunchao Zhang *Atot_ = Atot; 6343394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6344394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6345394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6346394ed5ebSJunchao Zhang *Btot_ = Btot; 6347394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6349394ed5ebSJunchao Zhang } 6350394ed5ebSJunchao Zhang 635127430b45SBarry Smith /* 635227430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6353158ec288SJunchao Zhang 6354158ec288SJunchao Zhang Input Parameters: 6355158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6356158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6357158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6358651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6359158ec288SJunchao Zhang 6360158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6361158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6362158ec288SJunchao Zhang 6363158ec288SJunchao Zhang Example: 6364158ec288SJunchao Zhang nnz1 = 4 6365158ec288SJunchao Zhang nnz = 6 6366158ec288SJunchao Zhang imap = [1,3,4,5] 6367158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6368158ec288SJunchao Zhang then, 6369158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6370158ec288SJunchao Zhang */ 6371d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6372d71ae5a4SJacob Faibussowitsch { 6373158ec288SJunchao Zhang PetscCount k, p; 6374158ec288SJunchao Zhang 6375158ec288SJunchao Zhang PetscFunctionBegin; 6376158ec288SJunchao Zhang jmap_new[0] = 0; 6377158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6378158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6379158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6380158ec288SJunchao Zhang } 6381158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6383158ec288SJunchao Zhang } 6384158ec288SJunchao Zhang 63852c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data) 63862c4ab24aSJunchao Zhang { 63872c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data; 63882c4ab24aSJunchao Zhang 63892c4ab24aSJunchao Zhang PetscFunctionBegin; 63902c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63912c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63922c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63932c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63942c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63952c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63962c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63972c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 63982c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 63992c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 64002c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 64012c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 64022c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 64032c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 64042c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 64052c4ab24aSJunchao Zhang } 64062c4ab24aSJunchao Zhang 6407d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6408d71ae5a4SJacob Faibussowitsch { 6409394ed5ebSJunchao Zhang MPI_Comm comm; 6410394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6411394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6412394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6413394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64142c4ab24aSJunchao Zhang PetscContainer container; 64152c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6416394ed5ebSJunchao Zhang 6417394ed5ebSJunchao Zhang PetscFunctionBegin; 64189566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64199566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6420cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6421eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6422cbc6b225SStefano Zampini #else 64239566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6424cbc6b225SStefano Zampini #endif 64259566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6426cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6427cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6428cbc6b225SStefano Zampini 64299566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64329566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64339566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64349566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64359566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64369566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64379566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6438394ed5ebSJunchao Zhang 64396aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6440394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6441394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6442e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6443e8729f6fSJunchao Zhang 6444e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6445394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6446394ed5ebSJunchao Zhang 6447394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6448394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6449394ed5ebSJunchao Zhang will have positive row indices. 6450394ed5ebSJunchao Zhang */ 6451394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 6452394ed5ebSJunchao Zhang if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT; /* e.g., -2^31, minimal to move them ahead */ 6453394ed5ebSJunchao Zhang else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */ 6454f7d195e4SLawrence Mitchell else { 6455f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 6456f7d195e4SLawrence Mitchell if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */ 6457f7d195e4SLawrence Mitchell } 6458394ed5ebSJunchao Zhang } 6459394ed5ebSJunchao Zhang 6460da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64619566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6462651b1cf9SStefano Zampini 6463651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6464651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64659371c9d4SSatish Balay if (i1[k] > PETSC_MIN_INT) break; 6466651b1cf9SStefano Zampini PetscInt i1start = k; 6467651b1cf9SStefano Zampini 64689566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */ 6469394ed5ebSJunchao Zhang for (; k < rem; k++) i1[k] += PETSC_MAX_INT; /* Revert row indices of local rows*/ 6470394ed5ebSJunchao Zhang 6471394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6472394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6473394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6474394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6475394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6476394ed5ebSJunchao Zhang const PetscInt *ranges; 6477394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6478394ed5ebSJunchao Zhang 64799566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64809566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6481394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6482394ed5ebSJunchao Zhang PetscMPIInt owner; 6483394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6484cbc6b225SStefano Zampini 6485394ed5ebSJunchao Zhang /* Locate a row range */ 6486394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64879566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6488394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6489394ed5ebSJunchao Zhang 6490394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 64919566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6492394ed5ebSJunchao Zhang 6493394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6494394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6495394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6496394ed5ebSJunchao Zhang PetscInt *nentries2; 6497394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6498cbc6b225SStefano Zampini 64999566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 65009566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 65019566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 65029566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6503394ed5ebSJunchao Zhang sendto = sendto2; 6504394ed5ebSJunchao Zhang nentries = nentries2; 6505394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6506394ed5ebSJunchao Zhang } 6507394ed5ebSJunchao Zhang sendto[nsend] = owner; 6508394ed5ebSJunchao Zhang nentries[nsend] = p - k; 65099566063dSJacob Faibussowitsch PetscCall(PetscCountCast(p - k, &nentries[nsend])); 6510394ed5ebSJunchao Zhang nsend++; 6511394ed5ebSJunchao Zhang k = p; 6512394ed5ebSJunchao Zhang } 6513394ed5ebSJunchao Zhang 6514394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6515394ed5ebSJunchao Zhang PetscSF sf1; 6516394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6517394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6518394ed5ebSJunchao Zhang PetscInt *offsets; 6519394ed5ebSJunchao Zhang PetscSFNode *iremote; 6520394ed5ebSJunchao Zhang 65219566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6524394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6525394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6526394ed5ebSJunchao Zhang iremote[k].index = 0; 6527394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 652854c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6529394ed5ebSJunchao Zhang } 65309566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65319566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65329566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65339566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 653463a3b9bcSJacob Faibussowitsch PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT "", nleaves2, n1 - rem); 6535394ed5ebSJunchao Zhang 6536394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6537394ed5ebSJunchao Zhang PetscSF sf2; 6538394ed5ebSJunchao Zhang nroots = nroots2; 6539394ed5ebSJunchao Zhang nleaves = nleaves2; 65409566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65419566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6543394ed5ebSJunchao Zhang p = 0; 6544394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 654554c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6546394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6547394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 6548394ed5ebSJunchao Zhang iremote[p].index = offsets[k] + q; 6549394ed5ebSJunchao Zhang } 6550394ed5ebSJunchao Zhang } 65519566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6552394ed5ebSJunchao Zhang 6553394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6554394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6555394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65569566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 65579566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1 + rem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 65589566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1 + rem, i2, MPI_REPLACE)); 65599566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1 + rem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 65609566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1 + rem, j2, MPI_REPLACE)); 6561394ed5ebSJunchao Zhang 65629566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65639566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6564394ed5ebSJunchao Zhang 6565394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6566394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65679566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6568394ed5ebSJunchao Zhang 6569651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6570651b1cf9SStefano Zampini PetscCount *Cperm1; 6571651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6572651b1cf9SStefano Zampini PetscCall(PetscArraycpy(Cperm1, perm1 + rem, nleaves)); 6573651b1cf9SStefano Zampini 6574651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6575651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6576651b1cf9SStefano Zampini PetscBool hypre; 6577651b1cf9SStefano Zampini const char *name; 6578651b1cf9SStefano Zampini PetscCall(PetscObjectGetName((PetscObject)mat, &name)); 6579651b1cf9SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre)); 6580651b1cf9SStefano Zampini if (hypre) { 6581651b1cf9SStefano Zampini PetscInt *minj; 6582651b1cf9SStefano Zampini PetscBT hasdiag; 6583651b1cf9SStefano Zampini 6584651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6585651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 6586651b1cf9SStefano Zampini for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT; 6587651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6588651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6589651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6590651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6591651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6592651b1cf9SStefano Zampini } 6593651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6594651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6595651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6596651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6597651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6598651b1cf9SStefano Zampini } 6599651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6600651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6601651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6602651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6603651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6604651b1cf9SStefano Zampini } 6605651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6606651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6607651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6608651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6609651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6610651b1cf9SStefano Zampini } 6611651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6612651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6613651b1cf9SStefano Zampini } 6614651b1cf9SStefano Zampini 6615651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6616651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6617651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6618651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6619394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6620394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6621394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6622394ed5ebSJunchao Zhang 6623651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66249566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6625651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66269566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6627394ed5ebSJunchao Zhang 6628394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6629394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6630394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6631394ed5ebSJunchao Zhang 66329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6636394ed5ebSJunchao Zhang 6637394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6638158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6639158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6640158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6641158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6642394ed5ebSJunchao Zhang 66439566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66449566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6645158ec288SJunchao Zhang 6646158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6647158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6648158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6649158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6650158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6651158ec288SJunchao Zhang 6652158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6653158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6654158ec288SJunchao Zhang 6655158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6656158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6657158ec288SJunchao Zhang 6658158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6659158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6660158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6661158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66629566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66639566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6664e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66659566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6666394ed5ebSJunchao Zhang 6667158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6668158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6669158ec288SJunchao Zhang 6670394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6671394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6672394ed5ebSJunchao Zhang PetscInt *Aj_new; 66739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66749566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66759566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6676394ed5ebSJunchao Zhang Aj = Aj_new; 6677394ed5ebSJunchao Zhang } 6678394ed5ebSJunchao Zhang 6679394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6680394ed5ebSJunchao Zhang PetscInt *Bj_new; 66819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66829566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66839566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6684394ed5ebSJunchao Zhang Bj = Bj_new; 6685394ed5ebSJunchao Zhang } 6686394ed5ebSJunchao Zhang 6687cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6688394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6689cbc6b225SStefano Zampini MatType rtype; 6690394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6691cf8ba265SJunchao Zhang PetscObjectState state; 66929566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66939566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6694394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 66959371c9d4SSatish Balay if (cstart) { 66969371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 66979371c9d4SSatish Balay } 66989566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mpiaij->A)); 66999566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mpiaij->B)); 67009566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 67019566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 67029566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 67039566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67045bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6705cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6706cf8ba265SJunchao Zhang PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6707cbc6b225SStefano Zampini 6708394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6709394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 6710394ed5ebSJunchao Zhang a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */ 6711394ed5ebSJunchao Zhang a->free_a = b->free_a = PETSC_TRUE; 6712394ed5ebSJunchao Zhang a->free_ij = b->free_ij = PETSC_TRUE; 6713394ed5ebSJunchao Zhang 6714cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67159566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67169566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67179566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67189566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6719cbc6b225SStefano Zampini 67202c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67212c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67222c4ab24aSJunchao Zhang coo->n = coo_n; 67232c4ab24aSJunchao Zhang coo->sf = sf2; 67242c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67252c4ab24aSJunchao Zhang coo->recvlen = nroots; 67262c4ab24aSJunchao Zhang coo->Annz = Annz; 67272c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67282c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67292c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67302c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67312c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67322c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67332c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67342c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67352c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67362c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67372c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67382c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67392c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67402c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67412c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67422c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67432c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67442c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67452c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67462c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67472c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67482c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 67492c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67502c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67512c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6753394ed5ebSJunchao Zhang } 6754394ed5ebSJunchao Zhang 6755d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6756d71ae5a4SJacob Faibussowitsch { 6757394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6758394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6759394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67602c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67612c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67622c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67632c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67642c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67652c4ab24aSJunchao Zhang PetscContainer container; 67662c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6767394ed5ebSJunchao Zhang 6768394ed5ebSJunchao Zhang PetscFunctionBegin; 67692c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67702c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67712c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67722c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67732c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67742c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67752c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67762c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67772c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67782c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67792c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67802c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67812c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67822c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67832c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67842c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 67852c4ab24aSJunchao Zhang 67869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 67879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6788394ed5ebSJunchao Zhang 6789394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 67902c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6791394ed5ebSJunchao Zhang 6792394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 67932c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6794394ed5ebSJunchao Zhang /* Add local entries to A and B */ 67952c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6796da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6797158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6798158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6799394ed5ebSJunchao Zhang } 68002c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6801158ec288SJunchao Zhang PetscScalar sum = 0.0; 6802158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6803158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6804394ed5ebSJunchao Zhang } 68052c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6806394ed5ebSJunchao Zhang 6807394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68082c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6809394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6810394ed5ebSJunchao Zhang } 68112c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6812394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6813394ed5ebSJunchao Zhang } 68149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6817394ed5ebSJunchao Zhang } 6818394ed5ebSJunchao Zhang 6819ccd8e176SBarry Smith /*MC 6820ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6821ccd8e176SBarry Smith 6822ccd8e176SBarry Smith Options Database Keys: 682311a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6824ccd8e176SBarry Smith 6825ccd8e176SBarry Smith Level: beginner 68260cd7f59aSBarry Smith 68270cd7f59aSBarry Smith Notes: 68282ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68290cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68300cd7f59aSBarry Smith in the matrix 68310cd7f59aSBarry Smith 683211a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 683311a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6834ccd8e176SBarry Smith 68351cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6836ccd8e176SBarry Smith M*/ 6837d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6838d71ae5a4SJacob Faibussowitsch { 6839ccd8e176SBarry Smith Mat_MPIAIJ *b; 6840ccd8e176SBarry Smith PetscMPIInt size; 6841ccd8e176SBarry Smith 6842ccd8e176SBarry Smith PetscFunctionBegin; 68439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68442205254eSKarl Rupp 68454dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6846ccd8e176SBarry Smith B->data = (void *)b; 6847aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6848ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6849ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6850ccd8e176SBarry Smith b->size = size; 68512205254eSKarl Rupp 68529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6853ccd8e176SBarry Smith 6854ccd8e176SBarry Smith /* build cache for off array entries formed */ 68559566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68562205254eSKarl Rupp 6857ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6858f4259b30SLisandro Dalcin b->colmap = NULL; 6859f4259b30SLisandro Dalcin b->garray = NULL; 6860ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6861ccd8e176SBarry Smith 6862ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68630298fd71SBarry Smith b->lvec = NULL; 68640298fd71SBarry Smith b->Mvctx = NULL; 6865ccd8e176SBarry Smith 6866ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6867f4259b30SLisandro Dalcin b->rowindices = NULL; 6868f4259b30SLisandro Dalcin b->rowvalues = NULL; 6869ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6870ccd8e176SBarry Smith 6871f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68720298fd71SBarry Smith b->spptr = NULL; 6873f60c3dc2SHong Zhang 68749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 68809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68843d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 68859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 68863d0639e7SStefano Zampini #endif 6887d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6888d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6889d5e393b6SSuyash Tandon #endif 68903d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 68919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 68923d0639e7SStefano Zampini #endif 68939779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 68949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6895191b95cbSRichard Tran Mills #endif 68969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 68979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 68989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 68999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 69005d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 69019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 69025d7652ecSHong Zhang #endif 6903d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6905d24d4204SJose E. Roman #endif 69069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69083dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69113dad0653Sstefano_zampini #endif 69129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69169566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6918ccd8e176SBarry Smith } 691981824310SBarry Smith 6920cce60c4dSBarry Smith /*@C 692111a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 692203bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 692303bfb495SBarry Smith 6924d083f849SBarry Smith Collective 692503bfb495SBarry Smith 692603bfb495SBarry Smith Input Parameters: 692703bfb495SBarry Smith + comm - MPI communicator 692811a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 692903bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 693011a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 69312ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69322ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69332ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6934483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 693504ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 693603bfb495SBarry Smith . a - matrix values 6937483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69382ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 693903bfb495SBarry Smith - oa - matrix values 694003bfb495SBarry Smith 694103bfb495SBarry Smith Output Parameter: 694203bfb495SBarry Smith . mat - the matrix 694303bfb495SBarry Smith 694403bfb495SBarry Smith Level: advanced 694503bfb495SBarry Smith 694603bfb495SBarry Smith Notes: 69472ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc. The user 6948292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 694903bfb495SBarry Smith 69502ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 695103bfb495SBarry Smith 69522ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 695303bfb495SBarry Smith 69547b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69557b55108eSBarry Smith 6956dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6957dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6958dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6959dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 696011a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6961dca341c0SJed Brown communication if it is known that only local entries will be set. 696203bfb495SBarry Smith 69631cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6964db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69652b26979fSBarry Smith @*/ 6966d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6967d71ae5a4SJacob Faibussowitsch { 696803bfb495SBarry Smith Mat_MPIAIJ *maij; 696903bfb495SBarry Smith 697003bfb495SBarry Smith PetscFunctionBegin; 697108401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6972aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6973aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69749566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69759566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69769566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 697703bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69782205254eSKarl Rupp 69798d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 698003bfb495SBarry Smith 69819566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69829566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 698303bfb495SBarry Smith 69849566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 69859566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 698603bfb495SBarry Smith 69879566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 69889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 69899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 69909566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 69919566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 69923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 699303bfb495SBarry Smith } 699403bfb495SBarry Smith 69954e84afc0SStefano Zampini typedef struct { 69964e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 69974e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 69984e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 69994e84afc0SStefano Zampini 70004e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 70014e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 70024e84afc0SStefano Zampini PetscScalar *bufa; 70034e84afc0SStefano Zampini Mat P_oth; 70044e84afc0SStefano Zampini 70054e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7006ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70074e84afc0SStefano Zampini 7008ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70094e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70104e84afc0SStefano Zampini of the temporary storage */ 70114e84afc0SStefano Zampini PetscBool reusesym; 70124e84afc0SStefano Zampini 70134e84afc0SStefano Zampini /* support for COO values insertion */ 7014ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7015ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7016ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7017ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7018c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7019c215019aSStefano Zampini PetscMemType mtype; 70204e84afc0SStefano Zampini 70214e84afc0SStefano Zampini /* customization */ 70224e84afc0SStefano Zampini PetscBool abmerge; 7023abb89eb1SStefano Zampini PetscBool P_oth_bind; 70244e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70254e84afc0SStefano Zampini 7026ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7027d71ae5a4SJacob Faibussowitsch { 70284e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70294e84afc0SStefano Zampini PetscInt i; 70304e84afc0SStefano Zampini 70314e84afc0SStefano Zampini PetscFunctionBegin; 70329566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70339566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70349566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70359566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70369566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70379566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70389566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 703948a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70409566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70419566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70429566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70439566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70449566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70459566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70474e84afc0SStefano Zampini } 70484e84afc0SStefano Zampini 7049fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7050fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7051fff043a9SJunchao Zhang */ 7052d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7053d71ae5a4SJacob Faibussowitsch { 7054c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7055c215019aSStefano Zampini 7056c215019aSStefano Zampini PetscFunctionBegin; 70579566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7058c215019aSStefano Zampini if (f) { 70599566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7060c215019aSStefano Zampini } else { 7061c215019aSStefano Zampini const PetscScalar *vv; 7062c215019aSStefano Zampini 70639566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7064c215019aSStefano Zampini if (n && idx) { 7065c215019aSStefano Zampini PetscScalar *w = v; 7066c215019aSStefano Zampini const PetscInt *oi = idx; 7067c215019aSStefano Zampini PetscInt j; 7068c215019aSStefano Zampini 7069c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7070c215019aSStefano Zampini } else { 70719566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7072c215019aSStefano Zampini } 70739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7074c215019aSStefano Zampini } 70753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7076c215019aSStefano Zampini } 7077c215019aSStefano Zampini 7078d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7079d71ae5a4SJacob Faibussowitsch { 70804e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70814e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70824e84afc0SStefano Zampini 70834e84afc0SStefano Zampini PetscFunctionBegin; 70844e84afc0SStefano Zampini MatCheckProduct(C, 1); 708528b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 70864e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 70874e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 708848a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 708948a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 70904e84afc0SStefano Zampini } 70914e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7092abb89eb1SStefano Zampini 7093abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 709408401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 70959566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7096abb89eb1SStefano Zampini } 70974e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 70984e84afc0SStefano Zampini PetscInt noff = mmdata->off[i + 1] - mmdata->off[i]; 70994e84afc0SStefano Zampini 71004e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 71014e84afc0SStefano Zampini if (noff) { 7102c215019aSStefano Zampini PetscInt nown = mmdata->own[i + 1] - mmdata->own[i]; 7103c215019aSStefano Zampini 71049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71064e84afc0SStefano Zampini n_o += noff; 71074e84afc0SStefano Zampini n_d += nown; 71084e84afc0SStefano Zampini } else { 7109c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7110c215019aSStefano Zampini 71119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71124e84afc0SStefano Zampini n_d += mm->nz; 71134e84afc0SStefano Zampini } 71144e84afc0SStefano Zampini } 7115c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71169566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71179566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71184e84afc0SStefano Zampini } 71199566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71214e84afc0SStefano Zampini } 71224e84afc0SStefano Zampini 71234e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71244e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7125d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7126d71ae5a4SJacob Faibussowitsch { 71274e84afc0SStefano Zampini Mat_Product *product = C->product; 7128ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71294e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71304e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71314e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71324e84afc0SStefano Zampini IS glob = NULL; 71334e84afc0SStefano Zampini const char *prefix; 71344e84afc0SStefano Zampini char pprefix[256]; 71354e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 713682a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 713782a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7138ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7139ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7140ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7141ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7142ddea5d60SJunchao Zhang 71434e84afc0SStefano Zampini MatProductType ptype; 7144d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71454e84afc0SStefano Zampini PetscMPIInt size; 71464e84afc0SStefano Zampini 71474e84afc0SStefano Zampini PetscFunctionBegin; 71484e84afc0SStefano Zampini MatCheckProduct(C, 1); 714928b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71504e84afc0SStefano Zampini ptype = product->type; 7151b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7152fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7153fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7154fa046f9fSJunchao Zhang } 71554e84afc0SStefano Zampini switch (ptype) { 71564e84afc0SStefano Zampini case MATPRODUCT_AB: 71574e84afc0SStefano Zampini A = product->A; 71584e84afc0SStefano Zampini P = product->B; 71594e84afc0SStefano Zampini m = A->rmap->n; 71604e84afc0SStefano Zampini n = P->cmap->n; 71614e84afc0SStefano Zampini M = A->rmap->N; 71624e84afc0SStefano Zampini N = P->cmap->N; 7163ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71644e84afc0SStefano Zampini break; 71654e84afc0SStefano Zampini case MATPRODUCT_AtB: 71664e84afc0SStefano Zampini P = product->A; 71674e84afc0SStefano Zampini A = product->B; 71684e84afc0SStefano Zampini m = P->cmap->n; 71694e84afc0SStefano Zampini n = A->cmap->n; 71704e84afc0SStefano Zampini M = P->cmap->N; 71714e84afc0SStefano Zampini N = A->cmap->N; 71724e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71734e84afc0SStefano Zampini break; 71744e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71754e84afc0SStefano Zampini A = product->A; 71764e84afc0SStefano Zampini P = product->B; 71774e84afc0SStefano Zampini m = P->cmap->n; 71784e84afc0SStefano Zampini n = P->cmap->n; 71794e84afc0SStefano Zampini M = P->cmap->N; 71804e84afc0SStefano Zampini N = P->cmap->N; 71814e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71824e84afc0SStefano Zampini break; 7183d71ae5a4SJacob Faibussowitsch default: 7184d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 71854e84afc0SStefano Zampini } 71869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 71874e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 71884e84afc0SStefano Zampini 71894e84afc0SStefano Zampini /* defaults */ 71904e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 71914e84afc0SStefano Zampini mp[i] = NULL; 71924e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 71934e84afc0SStefano Zampini rmapt[i] = -1; 71944e84afc0SStefano Zampini cmapt[i] = -1; 71954e84afc0SStefano Zampini rmapa[i] = NULL; 71964e84afc0SStefano Zampini cmapa[i] = NULL; 71974e84afc0SStefano Zampini } 71984e84afc0SStefano Zampini 71994e84afc0SStefano Zampini /* customization */ 72009566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 72014e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 72024e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72034e84afc0SStefano Zampini if (product->api_user) { 7204d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72059566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72069566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7207d0609cedSBarry Smith PetscOptionsEnd(); 72084e84afc0SStefano Zampini } else { 7209d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72109566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72119566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7212d0609cedSBarry Smith PetscOptionsEnd(); 7213abb89eb1SStefano Zampini } 7214abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7215abb89eb1SStefano Zampini if (product->api_user) { 7216d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72179566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7218d0609cedSBarry Smith PetscOptionsEnd(); 7219abb89eb1SStefano Zampini } else { 7220d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72219566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7222d0609cedSBarry Smith PetscOptionsEnd(); 72234e84afc0SStefano Zampini } 72244e84afc0SStefano Zampini } 72254e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72264e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72289566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72299566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72309566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72319566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7232ddea5d60SJunchao Zhang 7233ddea5d60SJunchao Zhang cp = 0; 72344e84afc0SStefano Zampini switch (ptype) { 72354e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72369566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72374e84afc0SStefano Zampini 7238ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7239ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72404e84afc0SStefano Zampini /* P is product->B */ 72419566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72429566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72439566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72449566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72459566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72469566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72479566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72484e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72499566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72509566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72519566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72524e84afc0SStefano Zampini rmapt[cp] = 1; 72534e84afc0SStefano Zampini cmapt[cp] = 2; 72544e84afc0SStefano Zampini cmapa[cp] = globidx; 72554e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72564e84afc0SStefano Zampini cp++; 7257ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72589566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72599566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72609566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72619566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72629566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72639566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72644e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72659566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72669566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72674e84afc0SStefano Zampini rmapt[cp] = 1; 72684e84afc0SStefano Zampini cmapt[cp] = 1; 72694e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72704e84afc0SStefano Zampini cp++; 72719566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72729566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72739566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72749566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72759566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72769566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72774e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72789566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72799566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72804e84afc0SStefano Zampini rmapt[cp] = 1; 72814e84afc0SStefano Zampini cmapt[cp] = 2; 72824e84afc0SStefano Zampini cmapa[cp] = p->garray; 72834e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72844e84afc0SStefano Zampini cp++; 72854e84afc0SStefano Zampini } 7286ddea5d60SJunchao Zhang 7287ddea5d60SJunchao Zhang /* A_off * P_other */ 72884e84afc0SStefano Zampini if (mmdata->P_oth) { 72899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 72909566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 72919566063dSJacob Faibussowitsch PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name)); 72929566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 72939566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 72949566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72959566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72969566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72979566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72989566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72994e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73009566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73019566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73024e84afc0SStefano Zampini rmapt[cp] = 1; 73034e84afc0SStefano Zampini cmapt[cp] = 2; 73044e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73054e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73064e84afc0SStefano Zampini cp++; 73074e84afc0SStefano Zampini } 73084e84afc0SStefano Zampini break; 7309ddea5d60SJunchao Zhang 73104e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73114e84afc0SStefano Zampini /* A is product->B */ 73129566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7313ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73149566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73159566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73169566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73179566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73189566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73199566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73204e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73219566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73229566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73239566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73244e84afc0SStefano Zampini rmapt[cp] = 2; 73254e84afc0SStefano Zampini rmapa[cp] = globidx; 73264e84afc0SStefano Zampini cmapt[cp] = 2; 73274e84afc0SStefano Zampini cmapa[cp] = globidx; 73284e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73294e84afc0SStefano Zampini cp++; 73304e84afc0SStefano Zampini } else { 73319566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73329566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73339566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73349566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73359566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73369566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73374e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73389566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73399566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73409566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73414e84afc0SStefano Zampini rmapt[cp] = 1; 73424e84afc0SStefano Zampini cmapt[cp] = 2; 73434e84afc0SStefano Zampini cmapa[cp] = globidx; 73444e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73454e84afc0SStefano Zampini cp++; 73469566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73479566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73489566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73499566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73509566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73519566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73524e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73539566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73549566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73554e84afc0SStefano Zampini rmapt[cp] = 2; 73564e84afc0SStefano Zampini rmapa[cp] = p->garray; 73574e84afc0SStefano Zampini cmapt[cp] = 2; 73584e84afc0SStefano Zampini cmapa[cp] = globidx; 73594e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73604e84afc0SStefano Zampini cp++; 73614e84afc0SStefano Zampini } 73624e84afc0SStefano Zampini break; 73634e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73649566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73654e84afc0SStefano Zampini /* P is product->B */ 73669566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73679566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73689566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73699566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73709566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73719566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73729566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73734e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73749566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73759566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73769566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73774e84afc0SStefano Zampini rmapt[cp] = 2; 73784e84afc0SStefano Zampini rmapa[cp] = globidx; 73794e84afc0SStefano Zampini cmapt[cp] = 2; 73804e84afc0SStefano Zampini cmapa[cp] = globidx; 73814e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73824e84afc0SStefano Zampini cp++; 73834e84afc0SStefano Zampini if (mmdata->P_oth) { 73849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 73859566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 73869566063dSJacob Faibussowitsch PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name)); 73879566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73889566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73899566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73909566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73919566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73929566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73939566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73944e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73959566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73969566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73974e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 73984e84afc0SStefano Zampini cp++; 73999566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 74009566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74019566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74029566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74039566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74049566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74054e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74069566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74079566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74084e84afc0SStefano Zampini rmapt[cp] = 2; 74094e84afc0SStefano Zampini rmapa[cp] = globidx; 74104e84afc0SStefano Zampini cmapt[cp] = 2; 74114e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74124e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74134e84afc0SStefano Zampini cp++; 74144e84afc0SStefano Zampini } 74154e84afc0SStefano Zampini break; 7416d71ae5a4SJacob Faibussowitsch default: 7417d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74184e84afc0SStefano Zampini } 74194e84afc0SStefano Zampini /* sanity check */ 74209371c9d4SSatish Balay if (size > 1) 74219371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74224e84afc0SStefano Zampini 74239566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7424ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7425ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7426ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7427ddea5d60SJunchao Zhang } 74284e84afc0SStefano Zampini mmdata->cp = cp; 74294e84afc0SStefano Zampini C->product->data = mmdata; 74304e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74314e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74324e84afc0SStefano Zampini 7433c215019aSStefano Zampini /* memory type */ 7434c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74359566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7436d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74379566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7438c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7439d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74403214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7441c215019aSStefano Zampini 74424e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7443ddea5d60SJunchao Zhang 7444ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7445ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7446ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7447ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7448ddea5d60SJunchao Zhang */ 74494e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74504e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74514e84afc0SStefano Zampini if (mptmp[cp]) continue; 7452ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74534e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74544e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74554e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74564e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74574e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74584e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74594e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74604e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7461ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7462ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74634e84afc0SStefano Zampini } 74644e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74654e84afc0SStefano Zampini } 7466ddea5d60SJunchao Zhang 7467ddea5d60SJunchao Zhang /* 7468ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7469ddea5d60SJunchao Zhang 7470ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7471ddea5d60SJunchao Zhang 7472d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7473ddea5d60SJunchao Zhang 7474ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7475ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7476ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7477ddea5d60SJunchao Zhang 7478ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7479da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7480ddea5d60SJunchao Zhang */ 74819566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74829566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7483ddea5d60SJunchao Zhang 7484ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7485ddea5d60SJunchao Zhang if (hasoffproc) { 74864e84afc0SStefano Zampini PetscSF msf; 74874e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 74884e84afc0SStefano Zampini 74899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 74909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 74919566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7492ddea5d60SJunchao Zhang 74934e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 74944e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74954e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 74964e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7497ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 74984e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74994e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75004e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75014e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 75024e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75034e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75044e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75054e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75064e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75074e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75084e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75094e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75104e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7511ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75124e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75134e84afc0SStefano Zampini *coi++ = gr; 75144e84afc0SStefano Zampini *idxoff++ = j; 75154e84afc0SStefano Zampini } 75164e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75174e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75184e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75194e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75204e84afc0SStefano Zampini } else { /* offdiag */ 75214e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75224e84afc0SStefano Zampini } 75234e84afc0SStefano Zampini ncoo_o += nz; 7524ddea5d60SJunchao Zhang } else { /* this is a local row */ 75254e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75264e84afc0SStefano Zampini } 75274e84afc0SStefano Zampini } 75284e84afc0SStefano Zampini } 75294e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75304e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75314e84afc0SStefano Zampini } 75324e84afc0SStefano Zampini 75339566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75349566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75359566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75369566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75374e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75389566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75399566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75409566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75419566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75429566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75439566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7544ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75459566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75464e84afc0SStefano Zampini coo_i = coo_i2; 75474e84afc0SStefano Zampini coo_j = coo_j2; 75484e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75494e84afc0SStefano Zampini ncoo = ncoo_d; 75509566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7551c215019aSStefano Zampini 75529566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75539566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75549566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75554e84afc0SStefano Zampini } 7556c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75574e84afc0SStefano Zampini 7558ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75594e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75604e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75614e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75624e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75634e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75644e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75654e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75664e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75674e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75684e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75694e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75704e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75714e84afc0SStefano Zampini 75724e84afc0SStefano Zampini if (mptmp[cp]) continue; 7573ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7574ddea5d60SJunchao Zhang /* fill coo_i */ 75754e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75764e84afc0SStefano Zampini const PetscInt gr = i + rs; 75774e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75784e84afc0SStefano Zampini } 7579ddea5d60SJunchao Zhang /* fill coo_j */ 7580ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75819566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7582ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7583ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7584ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75854e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 75864e84afc0SStefano Zampini } 75874e84afc0SStefano Zampini ncoo_d += mm->nz; 7588ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 75894e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75904e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75914e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75924e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7593ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 75944e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7595ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75964e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75974e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75984e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7599ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76004e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 76014e84afc0SStefano Zampini } 76024e84afc0SStefano Zampini ncoo_d += nz; 76034e84afc0SStefano Zampini } 76044e84afc0SStefano Zampini } 76054e84afc0SStefano Zampini } 76064e84afc0SStefano Zampini } 760748a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 760948a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76109566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7611ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76129566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76134e84afc0SStefano Zampini 76144e84afc0SStefano Zampini /* preallocate with COO data */ 76159566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76169566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76184e84afc0SStefano Zampini } 76194e84afc0SStefano Zampini 7620d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7621d71ae5a4SJacob Faibussowitsch { 76224e84afc0SStefano Zampini Mat_Product *product = mat->product; 76234e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76244e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7625abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76264e84afc0SStefano Zampini #else 76274e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76284e84afc0SStefano Zampini #endif 76294e84afc0SStefano Zampini 76304e84afc0SStefano Zampini PetscFunctionBegin; 76314e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76324e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 763348a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 763465e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7635abb89eb1SStefano Zampini switch (product->type) { 7636abb89eb1SStefano Zampini case MATPRODUCT_AB: 7637abb89eb1SStefano Zampini if (product->api_user) { 7638d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76399566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7640d0609cedSBarry Smith PetscOptionsEnd(); 7641abb89eb1SStefano Zampini } else { 7642d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76439566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7644d0609cedSBarry Smith PetscOptionsEnd(); 7645abb89eb1SStefano Zampini } 7646abb89eb1SStefano Zampini break; 7647abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7648abb89eb1SStefano Zampini if (product->api_user) { 7649d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76509566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7651d0609cedSBarry Smith PetscOptionsEnd(); 7652abb89eb1SStefano Zampini } else { 7653d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76549566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7655d0609cedSBarry Smith PetscOptionsEnd(); 7656abb89eb1SStefano Zampini } 7657abb89eb1SStefano Zampini break; 7658abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7659abb89eb1SStefano Zampini if (product->api_user) { 7660d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76619566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7662d0609cedSBarry Smith PetscOptionsEnd(); 7663abb89eb1SStefano Zampini } else { 7664d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76659566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7666d0609cedSBarry Smith PetscOptionsEnd(); 7667abb89eb1SStefano Zampini } 7668abb89eb1SStefano Zampini break; 7669d71ae5a4SJacob Faibussowitsch default: 7670d71ae5a4SJacob Faibussowitsch break; 7671abb89eb1SStefano Zampini } 7672abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7673abb89eb1SStefano Zampini } 76744e84afc0SStefano Zampini #endif 76754e84afc0SStefano Zampini if (match) { 76764e84afc0SStefano Zampini switch (product->type) { 76774e84afc0SStefano Zampini case MATPRODUCT_AB: 76784e84afc0SStefano Zampini case MATPRODUCT_AtB: 7679d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7680d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7681d71ae5a4SJacob Faibussowitsch break; 7682d71ae5a4SJacob Faibussowitsch default: 7683d71ae5a4SJacob Faibussowitsch break; 76844e84afc0SStefano Zampini } 76854e84afc0SStefano Zampini } 76864e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 76879566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 76883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 768981824310SBarry Smith } 769098921bdaSJacob Faibussowitsch 769198921bdaSJacob Faibussowitsch /* 769272833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 769372833a62Smarkadams4 769472833a62Smarkadams4 n - the number of block indices in cc[] 769572833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 769672833a62Smarkadams4 */ 7697d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7698d71ae5a4SJacob Faibussowitsch { 769972833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 770072833a62Smarkadams4 const PetscInt *idx; 770172833a62Smarkadams4 770272833a62Smarkadams4 PetscFunctionBegin; 770372833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 770472833a62Smarkadams4 if (nidx) { 770572833a62Smarkadams4 cnt = 0; 770672833a62Smarkadams4 cc[cnt] = idx[0] / bs; 770772833a62Smarkadams4 for (j = 1; j < nidx; j++) { 770872833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 770972833a62Smarkadams4 } 771072833a62Smarkadams4 } 771172833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 771272833a62Smarkadams4 *n = cnt + 1; 77133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771472833a62Smarkadams4 } 771572833a62Smarkadams4 771672833a62Smarkadams4 /* 771772833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 771872833a62Smarkadams4 771972833a62Smarkadams4 ncollapsed - the number of block indices 772072833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 772172833a62Smarkadams4 */ 7722d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7723d71ae5a4SJacob Faibussowitsch { 772472833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 772572833a62Smarkadams4 772672833a62Smarkadams4 PetscFunctionBegin; 772772833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 772872833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 772972833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 773072833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77319371c9d4SSatish Balay cprevtmp = cprev; 77329371c9d4SSatish Balay cprev = merged; 77339371c9d4SSatish Balay merged = cprevtmp; 773472833a62Smarkadams4 } 773572833a62Smarkadams4 *ncollapsed = nprev; 773672833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 773872833a62Smarkadams4 } 773972833a62Smarkadams4 77402d776b49SBarry Smith /* 774172833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 774272833a62Smarkadams4 774372833a62Smarkadams4 Input Parameter: 774472833a62Smarkadams4 . Amat - matrix 774572833a62Smarkadams4 - symmetrize - make the result symmetric 774672833a62Smarkadams4 + scale - scale with diagonal 774772833a62Smarkadams4 774872833a62Smarkadams4 Output Parameter: 774972833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 775072833a62Smarkadams4 775172833a62Smarkadams4 */ 7752e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7753d71ae5a4SJacob Faibussowitsch { 775472833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 775572833a62Smarkadams4 MPI_Comm comm; 775672833a62Smarkadams4 Mat Gmat; 775772833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 775872833a62Smarkadams4 Mat a, b, c; 775972833a62Smarkadams4 MatType jtype; 776072833a62Smarkadams4 776172833a62Smarkadams4 PetscFunctionBegin; 776272833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 776372833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 776472833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 776572833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 776672833a62Smarkadams4 nloc = (Iend - Istart) / bs; 776772833a62Smarkadams4 776872833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 776972833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 777072833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 777172833a62Smarkadams4 777272833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 777372833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 777472833a62Smarkadams4 implementation */ 777572833a62Smarkadams4 if (bs > 1) { 777672833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 777772833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 777872833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 777972833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 778072833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 778172833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 778272833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 77832cf69117Smarkadams4 MatScalar *aa, val, *AA; 77842cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 77859371c9d4SSatish Balay if (isseqaij) { 77869371c9d4SSatish Balay a = Amat; 77879371c9d4SSatish Balay b = NULL; 77889371c9d4SSatish Balay } else { 778972833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 77909371c9d4SSatish Balay a = d->A; 77919371c9d4SSatish Balay b = d->B; 779272833a62Smarkadams4 } 779372833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 779472833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 779572833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 77962cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 779759ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 779859ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 779959ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 780059ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 780159ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 780272833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 780359ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 780459ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 780559ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 780659ee9f9fSPierre Jolivet else { 780759ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 780859ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 780959ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 781072833a62Smarkadams4 } 781159ee9f9fSPierre Jolivet } 781259ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 781359ee9f9fSPierre Jolivet } 781459ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 781572833a62Smarkadams4 if (!ok) { 781672833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 781759ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 781872833a62Smarkadams4 goto old_bs; 781972833a62Smarkadams4 } 782072833a62Smarkadams4 } 782172833a62Smarkadams4 } 782272833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 782372833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 782472833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78252cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 782672833a62Smarkadams4 // diag 782772833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 782872833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 782972833a62Smarkadams4 ai = aseq->i; 783072833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 783172833a62Smarkadams4 aj = aseq->j + ai[brow]; 783272833a62Smarkadams4 for (int k = 0; k < n; k += bs) { // block columns 783372833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 783472833a62Smarkadams4 val = 0; 7835e02fb3cdSMark Adams if (index_size == 0) { 783672833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 783772833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 783872833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // columns in block 783972833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 784072833a62Smarkadams4 } 784172833a62Smarkadams4 } 7842e02fb3cdSMark Adams } else { // use (index,index) value if provided 7843e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7844e02fb3cdSMark Adams int ii = index[iii]; 7845e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 7846e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // columns in block 7847e02fb3cdSMark Adams int jj = index[jjj]; 7848cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7849e02fb3cdSMark Adams } 7850e02fb3cdSMark Adams } 7851e02fb3cdSMark Adams } 785259ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 785372833a62Smarkadams4 AA[k / bs] = val; 785472833a62Smarkadams4 } 785572833a62Smarkadams4 grow = Istart / bs + brow / bs; 785672833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, INSERT_VALUES)); 785772833a62Smarkadams4 } 785872833a62Smarkadams4 // off-diag 785972833a62Smarkadams4 if (ismpiaij) { 786072833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 786172833a62Smarkadams4 const PetscScalar *vals; 786272833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 786372833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 786472833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 786572833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 786672833a62Smarkadams4 for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 786759ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 786872833a62Smarkadams4 AA[k / bs] = 0; 786972833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 787072833a62Smarkadams4 } 787172833a62Smarkadams4 nc = ncols / bs; 787272833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7873e02fb3cdSMark Adams if (index_size == 0) { 787472833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 787572833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 787672833a62Smarkadams4 for (int k = 0; k < ncols; k += bs) { 787772833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // cols in block 787859ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 787972833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 788072833a62Smarkadams4 } 788172833a62Smarkadams4 } 788272833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 788372833a62Smarkadams4 } 7884e02fb3cdSMark Adams } else { // use (index,index) value if provided 7885e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7886e02fb3cdSMark Adams int ii = index[iii]; 7887e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 7888e02fb3cdSMark Adams for (int k = 0; k < ncols; k += bs) { 7889e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // cols in block 7890e02fb3cdSMark Adams int jj = index[jjj]; 7891e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7892e02fb3cdSMark Adams } 7893e02fb3cdSMark Adams } 7894e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7895e02fb3cdSMark Adams } 7896e02fb3cdSMark Adams } 789772833a62Smarkadams4 grow = Istart / bs + brow / bs; 789872833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, INSERT_VALUES)); 789972833a62Smarkadams4 } 790072833a62Smarkadams4 } 790172833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 790272833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79032cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 790472833a62Smarkadams4 } else { 790572833a62Smarkadams4 const PetscScalar *vals; 790672833a62Smarkadams4 const PetscInt *idx; 790772833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 790872833a62Smarkadams4 old_bs: 790972833a62Smarkadams4 /* 791072833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 791172833a62Smarkadams4 */ 791272833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 791372833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 791472833a62Smarkadams4 if (isseqaij) { 791572833a62Smarkadams4 PetscInt max_d_nnz; 791672833a62Smarkadams4 /* 791772833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 791872833a62Smarkadams4 */ 791972833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 792072833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 792172833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 792248a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 792372833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 792472833a62Smarkadams4 } else if (ismpiaij) { 792572833a62Smarkadams4 Mat Daij, Oaij; 792672833a62Smarkadams4 const PetscInt *garray; 792772833a62Smarkadams4 PetscInt max_d_nnz; 792872833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 792972833a62Smarkadams4 /* 793072833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 793172833a62Smarkadams4 */ 793272833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 793372833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 793472833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 793548a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 793672833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 793772833a62Smarkadams4 /* 793872833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 793972833a62Smarkadams4 */ 794072833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 794172833a62Smarkadams4 o_nnz[jj] = 0; 794272833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 794372833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 794472833a62Smarkadams4 o_nnz[jj] += ncols; 794572833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 794672833a62Smarkadams4 } 794772833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 794872833a62Smarkadams4 } 794972833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 795072833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 795172833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 795272833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 795372833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 795472833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 795572833a62Smarkadams4 PetscInt dest_row = Ii / bs; 795672833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 795772833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 795872833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 795972833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 796072833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 796172833a62Smarkadams4 } 796272833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 796372833a62Smarkadams4 } 796472833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 796572833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 796672833a62Smarkadams4 } 796772833a62Smarkadams4 } else { 79682d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79692d776b49SBarry Smith else { 79702d776b49SBarry Smith Gmat = Amat; 79712d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 79722d776b49SBarry Smith } 79739371c9d4SSatish Balay if (isseqaij) { 79749371c9d4SSatish Balay a = Gmat; 79759371c9d4SSatish Balay b = NULL; 79769371c9d4SSatish Balay } else { 797772833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 79789371c9d4SSatish Balay a = d->A; 79799371c9d4SSatish Balay b = d->B; 798072833a62Smarkadams4 } 79812d776b49SBarry Smith if (filter >= 0 || scale) { 79822d776b49SBarry Smith /* take absolute value of each entry */ 798372833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 798472833a62Smarkadams4 MatInfo info; 798572833a62Smarkadams4 PetscScalar *avals; 798672833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 798772833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 798872833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 798972833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 799072833a62Smarkadams4 } 799172833a62Smarkadams4 } 79922d776b49SBarry Smith } 799372833a62Smarkadams4 if (symmetrize) { 7994b94d7dedSBarry Smith PetscBool isset, issym; 7995b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 7996b94d7dedSBarry Smith if (!isset || !issym) { 799772833a62Smarkadams4 Mat matTrans; 799872833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 79991fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 800072833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 800172833a62Smarkadams4 } 800272833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80032d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 800472833a62Smarkadams4 if (scale) { 800572833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 800672833a62Smarkadams4 Vec diag; 800772833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 800872833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 800972833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 801072833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 801172833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 801272833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 801372833a62Smarkadams4 } 801472833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80152d776b49SBarry Smith 80162d776b49SBarry Smith if (filter >= 0) { 80172ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80182ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80192d776b49SBarry Smith } 802072833a62Smarkadams4 *a_Gmat = Gmat; 80213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 802272833a62Smarkadams4 } 802372833a62Smarkadams4 802472833a62Smarkadams4 /* 802598921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 802698921bdaSJacob Faibussowitsch */ 802798921bdaSJacob Faibussowitsch #include <petsc/private/fortranimpl.h> 802898921bdaSJacob Faibussowitsch 802998921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80309566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80319566063dSJacob Faibussowitsch #undef PetscCall 80329371c9d4SSatish Balay #define PetscCall(...) \ 80339371c9d4SSatish Balay do { \ 80345f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 803598921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 803698921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 803798921bdaSJacob Faibussowitsch return; \ 803898921bdaSJacob Faibussowitsch } \ 803998921bdaSJacob Faibussowitsch } while (0) 804098921bdaSJacob Faibussowitsch 804198921bdaSJacob Faibussowitsch #undef SETERRQ 80429371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80439371c9d4SSatish Balay do { \ 804498921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 804598921bdaSJacob Faibussowitsch return; \ 804698921bdaSJacob Faibussowitsch } while (0) 804798921bdaSJacob Faibussowitsch 804898921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 804998921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 805098921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 805198921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 805298921bdaSJacob Faibussowitsch #else 805398921bdaSJacob Faibussowitsch #endif 8054d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8055d71ae5a4SJacob Faibussowitsch { 805698921bdaSJacob Faibussowitsch Mat mat = *mmat; 805798921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 805898921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 805998921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 806098921bdaSJacob Faibussowitsch PetscScalar value; 806198921bdaSJacob Faibussowitsch 806298921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 806398921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80645f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 806598921bdaSJacob Faibussowitsch { 806698921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 806798921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 806898921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 806998921bdaSJacob Faibussowitsch 807098921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 807198921bdaSJacob Faibussowitsch Mat A = aij->A; 807298921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 807398921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 807498921bdaSJacob Faibussowitsch MatScalar *aa; 807598921bdaSJacob Faibussowitsch PetscBool ignorezeroentries = (((a->ignorezeroentries) && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 807698921bdaSJacob Faibussowitsch Mat B = aij->B; 807798921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 807898921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 807998921bdaSJacob Faibussowitsch MatScalar *ba; 808098921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 808198921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 808298921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 808398921bdaSJacob Faibussowitsch 808498921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 808598921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 808698921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 808798921bdaSJacob Faibussowitsch 808898921bdaSJacob Faibussowitsch PetscFunctionBegin; 80899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 80909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 809198921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 809298921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 80936bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 809498921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 809598921bdaSJacob Faibussowitsch row = im[i] - rstart; 809698921bdaSJacob Faibussowitsch lastcol1 = -1; 809798921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 809898921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 809998921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 810098921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 810198921bdaSJacob Faibussowitsch low1 = 0; 810298921bdaSJacob Faibussowitsch high1 = nrow1; 810398921bdaSJacob Faibussowitsch lastcol2 = -1; 810498921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 810598921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 810698921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 810798921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 810898921bdaSJacob Faibussowitsch low2 = 0; 810998921bdaSJacob Faibussowitsch high2 = nrow2; 811098921bdaSJacob Faibussowitsch 811198921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 811298921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 811398921bdaSJacob Faibussowitsch else value = v[i + j * m]; 811498921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 811598921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 811698921bdaSJacob Faibussowitsch col = in[j] - cstart; 811798921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 811898921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 811998921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 812063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 812198921bdaSJacob Faibussowitsch } else { 812298921bdaSJacob Faibussowitsch if (mat->was_assembled) { 812348a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 812498921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8125eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 812698921bdaSJacob Faibussowitsch col--; 812798921bdaSJacob Faibussowitsch #else 812898921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 812998921bdaSJacob Faibussowitsch #endif 813098921bdaSJacob Faibussowitsch if (col < 0 && !((Mat_SeqAIJ *)(aij->A->data))->nonew) { 81319566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 813298921bdaSJacob Faibussowitsch col = in[j]; 813398921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 813498921bdaSJacob Faibussowitsch B = aij->B; 813598921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81369371c9d4SSatish Balay bimax = b->imax; 81379371c9d4SSatish Balay bi = b->i; 81389371c9d4SSatish Balay bilen = b->ilen; 81399371c9d4SSatish Balay bj = b->j; 814098921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 814198921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 814298921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 814398921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 814498921bdaSJacob Faibussowitsch low2 = 0; 814598921bdaSJacob Faibussowitsch high2 = nrow2; 814698921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 814798921bdaSJacob Faibussowitsch ba = b->a; 814898921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 814998921bdaSJacob Faibussowitsch } 815098921bdaSJacob Faibussowitsch } else col = in[j]; 815198921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 815298921bdaSJacob Faibussowitsch } 815398921bdaSJacob Faibussowitsch } 815498921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 815598921bdaSJacob Faibussowitsch if (roworiented) { 81569566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 815798921bdaSJacob Faibussowitsch } else { 81589566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 815998921bdaSJacob Faibussowitsch } 816098921bdaSJacob Faibussowitsch } 816198921bdaSJacob Faibussowitsch } 81629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81639566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 816498921bdaSJacob Faibussowitsch } 816598921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 816698921bdaSJacob Faibussowitsch } 816772833a62Smarkadams4 816898921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 816998921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 817098921bdaSJacob Faibussowitsch * original definitions */ 81719566063dSJacob Faibussowitsch #undef PetscCall 817298921bdaSJacob Faibussowitsch #undef SETERRQ 8173