1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 1026cec326SBarry Smith { 1126cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1226cec326SBarry Smith 1326cec326SBarry Smith PetscFunctionBegin; 1426cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1526cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1626cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 1726cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 1826cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2026cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2126cec326SBarry Smith #else 2226cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 2326cec326SBarry Smith #endif 2426cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 2526cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 2626cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 2726cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 2826cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 2926cec326SBarry Smith 3026cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3126cec326SBarry Smith 3226cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 3326cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 3426cec326SBarry Smith 3526cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 4126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 4326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 4726cec326SBarry Smith #endif 4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 4926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 5026cec326SBarry Smith #endif 5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 5226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 5326cec326SBarry Smith #endif 5426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 5726cec326SBarry Smith #endif 5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 6026cec326SBarry Smith #endif 6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 6226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 6326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 6426cec326SBarry Smith #endif 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 6926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 7326cec326SBarry Smith #endif 7426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 7626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 7726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 7926cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 8026cec326SBarry Smith } 8126cec326SBarry Smith 8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 8326cec326SBarry Smith #define TYPE AIJ 8426cec326SBarry Smith #define TYPE_AIJ 8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 8626cec326SBarry Smith #undef TYPE 8726cec326SBarry Smith #undef TYPE_AIJ 8826cec326SBarry Smith 89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 90d71ae5a4SJacob Faibussowitsch { 918a9c020eSBarry Smith Mat B; 928a9c020eSBarry Smith 938a9c020eSBarry Smith PetscFunctionBegin; 948a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 958a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 968a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 97501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 998a9c020eSBarry Smith } 1008a9c020eSBarry Smith 101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 102d71ae5a4SJacob Faibussowitsch { 1038a9c020eSBarry Smith Mat B; 1048a9c020eSBarry Smith 1058a9c020eSBarry Smith PetscFunctionBegin; 1068a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1078a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 108501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1108a9c020eSBarry Smith } 1118a9c020eSBarry Smith 11201bebe75SBarry Smith /*MC 11301bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 11401bebe75SBarry Smith 11511a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 11611a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 11711a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 11801bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 11901bebe75SBarry Smith the above preallocation routines for simplicity. 12001bebe75SBarry Smith 12127430b45SBarry Smith Options Database Key: 12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 12301bebe75SBarry Smith 12411a5261eSBarry Smith Developer Note: 1252ef1f0ffSBarry Smith Level: beginner 1262ef1f0ffSBarry Smith 12711a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 12801bebe75SBarry Smith enough exist. 12901bebe75SBarry Smith 1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 13101bebe75SBarry Smith M*/ 13201bebe75SBarry Smith 13301bebe75SBarry Smith /*MC 13401bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 13501bebe75SBarry Smith 13611a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 13711a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 13811a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 13901bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14001bebe75SBarry Smith the above preallocation routines for simplicity. 14101bebe75SBarry Smith 14227430b45SBarry Smith Options Database Key: 14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 14401bebe75SBarry Smith 14501bebe75SBarry Smith Level: beginner 14601bebe75SBarry Smith 1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 14801bebe75SBarry Smith M*/ 14901bebe75SBarry Smith 150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 151d71ae5a4SJacob Faibussowitsch { 152f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 153f74ef234SStefano Zampini 154f74ef234SStefano Zampini PetscFunctionBegin; 155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 156b470e4b4SRichard Tran Mills A->boundtocpu = flg; 157f74ef234SStefano Zampini #endif 1581baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1591baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1603120d049SRichard Tran Mills 1613120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1623120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1633120d049SRichard Tran Mills * to differ from the parent matrix. */ 1641baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1651baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 167f74ef234SStefano Zampini } 168f74ef234SStefano Zampini 169ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 170d71ae5a4SJacob Faibussowitsch { 17126bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 17226bda2c4Sstefano_zampini 17326bda2c4Sstefano_zampini PetscFunctionBegin; 17446533700Sstefano_zampini if (mat->A) { 1759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 17746533700Sstefano_zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17926bda2c4Sstefano_zampini } 18026bda2c4Sstefano_zampini 181ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 182d71ae5a4SJacob Faibussowitsch { 18327d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 18427d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 18527d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 18627d4218bSShri Abhyankar const PetscInt *ia, *ib; 187ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 18827d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 18927d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 19027d4218bSShri Abhyankar 19127d4218bSShri Abhyankar PetscFunctionBegin; 192f4259b30SLisandro Dalcin *keptrows = NULL; 193ce496241SStefano Zampini 19427d4218bSShri Abhyankar ia = a->i; 19527d4218bSShri Abhyankar ib = b->i; 1969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 1979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 19827d4218bSShri Abhyankar for (i = 0; i < m; i++) { 19927d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 20027d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 20127d4218bSShri Abhyankar if (!na && !nb) { 20227d4218bSShri Abhyankar cnt++; 20327d4218bSShri Abhyankar goto ok1; 20427d4218bSShri Abhyankar } 205ce496241SStefano Zampini aa = aav + ia[i]; 20627d4218bSShri Abhyankar for (j = 0; j < na; j++) { 20727d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 20827d4218bSShri Abhyankar } 2098e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 21027d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 21127d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 21227d4218bSShri Abhyankar } 21327d4218bSShri Abhyankar cnt++; 21427d4218bSShri Abhyankar ok1:; 21527d4218bSShri Abhyankar } 2161c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 217ce496241SStefano Zampini if (!n0rows) { 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 221ce496241SStefano Zampini } 2229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 22327d4218bSShri Abhyankar cnt = 0; 22427d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22527d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22627d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22727d4218bSShri Abhyankar if (!na && !nb) continue; 228ce496241SStefano Zampini aa = aav + ia[i]; 22927d4218bSShri Abhyankar for (j = 0; j < na; j++) { 23027d4218bSShri Abhyankar if (aa[j] != 0.0) { 23127d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23227d4218bSShri Abhyankar goto ok2; 23327d4218bSShri Abhyankar } 23427d4218bSShri Abhyankar } 2358e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23627d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23727d4218bSShri Abhyankar if (bb[j] != 0.0) { 23827d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23927d4218bSShri Abhyankar goto ok2; 24027d4218bSShri Abhyankar } 24127d4218bSShri Abhyankar } 24227d4218bSShri Abhyankar ok2:; 24327d4218bSShri Abhyankar } 2449566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24827d4218bSShri Abhyankar } 24927d4218bSShri Abhyankar 250ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 251d71ae5a4SJacob Faibussowitsch { 25299e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 25394342113SStefano Zampini PetscBool cong; 25499e65526SBarry Smith 25599e65526SBarry Smith PetscFunctionBegin; 2569566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 25794342113SStefano Zampini if (Y->assembled && cong) { 2589566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 25999e65526SBarry Smith } else { 2609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 26199e65526SBarry Smith } 2623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26399e65526SBarry Smith } 26499e65526SBarry Smith 265ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 266d71ae5a4SJacob Faibussowitsch { 267f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 268f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 269f1f41ecbSJed Brown 270f1f41ecbSJed Brown PetscFunctionBegin; 2710298fd71SBarry Smith *zrows = NULL; 2729566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2739566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 274f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2759566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 277f1f41ecbSJed Brown } 278f1f41ecbSJed Brown 279ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 280d71ae5a4SJacob Faibussowitsch { 2810716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 282a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 2830716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 2840716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 2850716a85fSBarry Smith PetscReal *work; 286ce496241SStefano Zampini const PetscScalar *dummy; 2870716a85fSBarry Smith 2880716a85fSBarry Smith PetscFunctionBegin; 2899566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 2909566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 2919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 2929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 2939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 2949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 295857cbf51SRichard Tran Mills if (type == NORM_2) { 296ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 297ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 298857cbf51SRichard Tran Mills } else if (type == NORM_1) { 299ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 300ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 301857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 302ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 303ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 304857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 305ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 306ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 307857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 308ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 309ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 310857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 311857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 3121c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3130716a85fSBarry Smith } else { 3141c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3150716a85fSBarry Smith } 3169566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 319857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 320a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3210716a85fSBarry Smith } 3223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3230716a85fSBarry Smith } 3240716a85fSBarry Smith 325ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 326d71ae5a4SJacob Faibussowitsch { 327e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 328e52d2c62SBarry Smith IS sis, gis; 329e52d2c62SBarry Smith const PetscInt *isis, *igis; 330e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 331e52d2c62SBarry Smith 332e52d2c62SBarry Smith PetscFunctionBegin; 3339566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3349566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3359566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3369566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3379566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 339e52d2c62SBarry Smith 3409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3419566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3429566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 343e52d2c62SBarry Smith n = ngis + nsis; 3449566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3459566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 346e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3479566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 348e52d2c62SBarry Smith 3499566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 354e52d2c62SBarry Smith } 355e52d2c62SBarry Smith 356dd6ea824SBarry Smith /* 3570f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3589e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3590f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3600f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 36172fa4726SStefano Zampini has an order N integer array but is fast to access. 3629e25ed09SBarry Smith */ 363d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 364d71ae5a4SJacob Faibussowitsch { 36544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 366d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 367dbb450caSBarry Smith 3683a40ed3dSBarry Smith PetscFunctionBegin; 36908401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 370aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 371eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 372c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 373b1fc9764SSatish Balay #else 3749566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 375905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 376b1fc9764SSatish Balay #endif 3773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3789e25ed09SBarry Smith } 3799e25ed09SBarry Smith 380d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 381a8f51744SPierre Jolivet do { \ 382db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 383db4deed7SKarl Rupp else high1 = nrow1; \ 384fd3458f5SBarry Smith lastcol1 = col; \ 385fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 386fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 387fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 388fd3458f5SBarry Smith else low1 = t; \ 389ba4e3ef2SSatish Balay } \ 390fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 391fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 392fd3458f5SBarry Smith if (rp1[_i] == col) { \ 3930c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 3940c0d7e18SFande Kong ap1[_i] += value; \ 3950c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 3960c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 3979371c9d4SSatish Balay } else ap1[_i] = value; \ 39830770e4dSSatish Balay goto a_noinsert; \ 3990520107fSSatish Balay } \ 4000520107fSSatish Balay } \ 4019371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4029371c9d4SSatish Balay low1 = 0; \ 4039371c9d4SSatish Balay high1 = nrow1; \ 4049371c9d4SSatish Balay goto a_noinsert; \ 4059371c9d4SSatish Balay } \ 4069371c9d4SSatish Balay if (nonew == 1) { \ 4079371c9d4SSatish Balay low1 = 0; \ 4089371c9d4SSatish Balay high1 = nrow1; \ 4099371c9d4SSatish Balay goto a_noinsert; \ 4109371c9d4SSatish Balay } \ 41108401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 412fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4139371c9d4SSatish Balay N = nrow1++ - 1; \ 4149371c9d4SSatish Balay a->nz++; \ 4159371c9d4SSatish Balay high1++; \ 4160520107fSSatish Balay /* shift up all the later entries in this row */ \ 4179566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4189566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 419fd3458f5SBarry Smith rp1[_i] = col; \ 420fd3458f5SBarry Smith ap1[_i] = value; \ 42130770e4dSSatish Balay a_noinsert:; \ 422fd3458f5SBarry Smith ailen[row] = nrow1; \ 423a8f51744SPierre Jolivet } while (0) 4240a198c4cSBarry Smith 425d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 426a8f51744SPierre Jolivet do { \ 427db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 428db4deed7SKarl Rupp else high2 = nrow2; \ 429fd3458f5SBarry Smith lastcol2 = col; \ 430fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 431fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 432fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 433fd3458f5SBarry Smith else low2 = t; \ 434ba4e3ef2SSatish Balay } \ 435fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 436fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 437fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4380c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4390c0d7e18SFande Kong ap2[_i] += value; \ 4400c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4419371c9d4SSatish Balay } else ap2[_i] = value; \ 44230770e4dSSatish Balay goto b_noinsert; \ 44330770e4dSSatish Balay } \ 44430770e4dSSatish Balay } \ 4459371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4469371c9d4SSatish Balay low2 = 0; \ 4479371c9d4SSatish Balay high2 = nrow2; \ 4489371c9d4SSatish Balay goto b_noinsert; \ 4499371c9d4SSatish Balay } \ 4509371c9d4SSatish Balay if (nonew == 1) { \ 4519371c9d4SSatish Balay low2 = 0; \ 4529371c9d4SSatish Balay high2 = nrow2; \ 4539371c9d4SSatish Balay goto b_noinsert; \ 4549371c9d4SSatish Balay } \ 45508401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 456fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4579371c9d4SSatish Balay N = nrow2++ - 1; \ 4589371c9d4SSatish Balay b->nz++; \ 4599371c9d4SSatish Balay high2++; \ 46030770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4619566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4629566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 463fd3458f5SBarry Smith rp2[_i] = col; \ 464fd3458f5SBarry Smith ap2[_i] = value; \ 46530770e4dSSatish Balay b_noinsert:; \ 466fd3458f5SBarry Smith bilen[row] = nrow2; \ 467a8f51744SPierre Jolivet } while (0) 46830770e4dSSatish Balay 469ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 470d71ae5a4SJacob Faibussowitsch { 4712fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4722fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4732fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 474fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4752fd7e33dSBarry Smith 4762fd7e33dSBarry Smith PetscFunctionBegin; 4772fd7e33dSBarry Smith /* code only works for square matrices A */ 4782fd7e33dSBarry Smith 4792fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 4809566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 4812fd7e33dSBarry Smith row = row - diag; 4822fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 4832fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 4842fd7e33dSBarry Smith } 485fff043a9SJunchao Zhang if (l) { 4869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 4879566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 4889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 489fff043a9SJunchao Zhang } 4902fd7e33dSBarry Smith 4912fd7e33dSBarry Smith /* diagonal part */ 492fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 4939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 4949566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row]))); 4959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 496fff043a9SJunchao Zhang } 4972fd7e33dSBarry Smith 4982fd7e33dSBarry Smith /* right of diagonal part */ 499fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5019566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 503fff043a9SJunchao Zhang } 5043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5052fd7e33dSBarry Smith } 5062fd7e33dSBarry Smith 507d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 508d71ae5a4SJacob Faibussowitsch { 50944a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 510071fcb05SBarry Smith PetscScalar value = 0.0; 511d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 512d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 513ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5148a729477SBarry Smith 5150520107fSSatish Balay /* Some Variables required in the macro */ 5164ee7247eSSatish Balay Mat A = aij->A; 5174ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 51857809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 519ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 52030770e4dSSatish Balay Mat B = aij->B; 52130770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 522d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 523ce496241SStefano Zampini MatScalar *aa, *ba; 524fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5258d76821aSHong Zhang PetscInt nonew; 526a77337e4SBarry Smith MatScalar *ap1, *ap2; 5274ee7247eSSatish Balay 5283a40ed3dSBarry Smith PetscFunctionBegin; 5299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5318a729477SBarry Smith for (i = 0; i < m; i++) { 5325ef9f2a5SBarry Smith if (im[i] < 0) continue; 53308401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5344b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5354b0e389bSBarry Smith row = im[i] - rstart; 536fd3458f5SBarry Smith lastcol1 = -1; 5378e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5388e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 539fd3458f5SBarry Smith rmax1 = aimax[row]; 540fd3458f5SBarry Smith nrow1 = ailen[row]; 541fd3458f5SBarry Smith low1 = 0; 542fd3458f5SBarry Smith high1 = nrow1; 543fd3458f5SBarry Smith lastcol2 = -1; 5448e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5458e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 546fd3458f5SBarry Smith rmax2 = bimax[row]; 547d498b1e9SBarry Smith nrow2 = bilen[row]; 548fd3458f5SBarry Smith low2 = 0; 549fd3458f5SBarry Smith high2 = nrow2; 550fd3458f5SBarry Smith 5511eb62cbbSBarry Smith for (j = 0; j < n; j++) { 552071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 553c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 554fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 555fd3458f5SBarry Smith col = in[j] - cstart; 5568d76821aSHong Zhang nonew = a->nonew; 557d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 558f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 559f7d195e4SLawrence Mitchell continue; 560f7d195e4SLawrence Mitchell } else { 561f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 562227d817aSBarry Smith if (mat->was_assembled) { 56348a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 564aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 565eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 566fa46199cSSatish Balay col--; 567b1fc9764SSatish Balay #else 568905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 569b1fc9764SSatish Balay #endif 570f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 5719566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); /* Change aij->B from reduced/local format to expanded/global format */ 5724b0e389bSBarry Smith col = in[j]; 5739bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 574f9508a3cSSatish Balay B = aij->B; 575f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5769371c9d4SSatish Balay bimax = b->imax; 5779371c9d4SSatish Balay bi = b->i; 5789371c9d4SSatish Balay bilen = b->ilen; 5799371c9d4SSatish Balay bj = b->j; 5809371c9d4SSatish Balay ba = b->a; 581d498b1e9SBarry Smith rp2 = bj + bi[row]; 582d498b1e9SBarry Smith ap2 = ba + bi[row]; 583d498b1e9SBarry Smith rmax2 = bimax[row]; 584d498b1e9SBarry Smith nrow2 = bilen[row]; 585d498b1e9SBarry Smith low2 = 0; 586d498b1e9SBarry Smith high2 = nrow2; 587d0f46423SBarry Smith bm = aij->B->rmap->n; 588f9508a3cSSatish Balay ba = b->a; 589d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 590f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 5919566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 59298921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 5930587a0fcSBarry Smith } 594c48de900SBarry Smith } else col = in[j]; 5958d76821aSHong Zhang nonew = b->nonew; 596d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 5971eb62cbbSBarry Smith } 5981eb62cbbSBarry Smith } 5995ef9f2a5SBarry Smith } else { 60028b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 60190f02eecSBarry Smith if (!aij->donotstash) { 6025080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 603d36fbae8SSatish Balay if (roworiented) { 6048e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 605d36fbae8SSatish Balay } else { 6068e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6074b0e389bSBarry Smith } 6081eb62cbbSBarry Smith } 6098a729477SBarry Smith } 61090f02eecSBarry Smith } 6115519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6129566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6148a729477SBarry Smith } 6158a729477SBarry Smith 6162b08fdbeSandi selinger /* 617904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6182b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 619904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6202b08fdbeSandi selinger */ 621d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 622d71ae5a4SJacob Faibussowitsch { 623904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 624904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6254cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 626904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 627904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 628904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 629904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 630904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6316dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 632904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 633904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 634904d1e70Sandi selinger 635904d1e70Sandi selinger PetscFunctionBegin; 636904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 637904d1e70Sandi selinger for (j = 0; j < am; j++) { 638904d1e70Sandi selinger dnz = onz = 0; 639904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6406dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 641904d1e70Sandi selinger /* If column is in the diagonal */ 642904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 643904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 644904d1e70Sandi selinger dnz++; 645904d1e70Sandi selinger } else { /* off-diagonal entries */ 646904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 647904d1e70Sandi selinger onz++; 648904d1e70Sandi selinger } 649904d1e70Sandi selinger } 650904d1e70Sandi selinger ailen[j] = dnz; 651904d1e70Sandi selinger bilen[j] = onz; 652904d1e70Sandi selinger } 6533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 654904d1e70Sandi selinger } 655904d1e70Sandi selinger 656904d1e70Sandi selinger /* 657904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 658904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6591de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6601de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6611de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 662904d1e70Sandi selinger */ 663d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 664d71ae5a4SJacob Faibussowitsch { 6653a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6663a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6674cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 668f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6693a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6703a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6713a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6723a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6733a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6746dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6751de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 676904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 677904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 6783a063d27Sandi selinger 6793a063d27Sandi selinger PetscFunctionBegin; 6803a063d27Sandi selinger /* Iterate over all rows of the matrix */ 6813a063d27Sandi selinger for (j = 0; j < am; j++) { 682904d1e70Sandi selinger dnz_row = onz_row = 0; 683904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 684904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 685e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 686e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 687ae8e66a0Sandi selinger /* If column is in the diagonal */ 6883a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 689904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 690904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 691904d1e70Sandi selinger dnz_row++; 692ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 693904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 694904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 695904d1e70Sandi selinger onz_row++; 6963a063d27Sandi selinger } 6973a063d27Sandi selinger } 698904d1e70Sandi selinger ailen[j] = dnz_row; 699904d1e70Sandi selinger bilen[j] = onz_row; 7003a063d27Sandi selinger } 7013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7023a063d27Sandi selinger } 7033a063d27Sandi selinger 704ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 705d71ae5a4SJacob Faibussowitsch { 706b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 707d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 708d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 709b49de8d1SLois Curfman McInnes 7103a40ed3dSBarry Smith PetscFunctionBegin; 711b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 71254c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 71354c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 71485835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 715b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 716b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 71754c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 71854c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 719b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 720b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7219566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 722fa852ad4SSatish Balay } else { 72348a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 724aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 725eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 726fa46199cSSatish Balay col--; 727b1fc9764SSatish Balay #else 728905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 729b1fc9764SSatish Balay #endif 730e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 73148a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 732b49de8d1SLois Curfman McInnes } 733b49de8d1SLois Curfman McInnes } 734b49de8d1SLois Curfman McInnes } 7353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 736b49de8d1SLois Curfman McInnes } 737bc5ccf88SSatish Balay 738ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 739d71ae5a4SJacob Faibussowitsch { 740bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 741b1d57f15SBarry Smith PetscInt nstash, reallocs; 742bc5ccf88SSatish Balay 743bc5ccf88SSatish Balay PetscFunctionBegin; 7443ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 745bc5ccf88SSatish Balay 7469566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7479566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7489566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 750bc5ccf88SSatish Balay } 751bc5ccf88SSatish Balay 752d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 753d71ae5a4SJacob Faibussowitsch { 754bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 755b1d57f15SBarry Smith PetscMPIInt n; 756b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 757e44c0bd4SBarry Smith PetscInt *row, *col; 758ace3abfcSBarry Smith PetscBool other_disassembled; 75987828ca2SBarry Smith PetscScalar *val; 760bc5ccf88SSatish Balay 76191c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7626e111a19SKarl Rupp 763bc5ccf88SSatish Balay PetscFunctionBegin; 7644cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 765a2d1c673SSatish Balay while (1) { 7669566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 767a2d1c673SSatish Balay if (!flg) break; 768a2d1c673SSatish Balay 769bc5ccf88SSatish Balay for (i = 0; i < n;) { 770bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7712205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7722205254eSKarl Rupp if (row[j] != rstart) break; 7732205254eSKarl Rupp } 774bc5ccf88SSatish Balay if (j < n) ncols = j - i; 775bc5ccf88SSatish Balay else ncols = n - i; 776bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7779566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 778bc5ccf88SSatish Balay i = j; 779bc5ccf88SSatish Balay } 780bc5ccf88SSatish Balay } 7819566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 782bc5ccf88SSatish Balay } 7838c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 784c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 7859ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 7869ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 7879566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 7889566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 7899ecce9b1SRichard Tran Mills } 790e2cf4d64SStefano Zampini #endif 7919566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 7929566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 793bc5ccf88SSatish Balay 794bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 795071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 796bc5ccf88SSatish Balay /* 797bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 798bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 799bc5ccf88SSatish Balay */ 800bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 8015f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 80235cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 8039566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 804ad59fb31SSatish Balay } 805ad59fb31SSatish Balay } 80648a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8079566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8088c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 809c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 810e2cf4d64SStefano Zampini #endif 8119566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8129566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 813bc5ccf88SSatish Balay 8149566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8152205254eSKarl Rupp 816f4259b30SLisandro Dalcin aij->rowvalues = NULL; 817a30b2313SHong Zhang 8189566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 819e56f5c9eSBarry Smith 8204f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 821f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 822e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 8231c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 824e56f5c9eSBarry Smith } 8258c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 826c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 827e2cf4d64SStefano Zampini #endif 8283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 829bc5ccf88SSatish Balay } 830bc5ccf88SSatish Balay 831ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 832d71ae5a4SJacob Faibussowitsch { 83344a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8343a40ed3dSBarry Smith 8353a40ed3dSBarry Smith PetscFunctionBegin; 8369566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8379566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8391eb62cbbSBarry Smith } 8401eb62cbbSBarry Smith 841ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 842d71ae5a4SJacob Faibussowitsch { 8431b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8441b1dd7adSMatthew G. Knepley PetscInt *lrows; 8456e520ac8SStefano Zampini PetscInt r, len; 8469939a2d1SBarry Smith PetscBool cong; 8471eb62cbbSBarry Smith 8483a40ed3dSBarry Smith PetscFunctionBegin; 8496e520ac8SStefano Zampini /* get locally owned rows */ 8509566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8519566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 852dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 85397b48c8fSBarry Smith if (x && b) { 8541b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8551b1dd7adSMatthew G. Knepley PetscScalar *bb; 8561b1dd7adSMatthew G. Knepley 85728b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8589566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8599566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8601b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8619566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8629566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 86397b48c8fSBarry Smith } 864a92ad425SStefano Zampini 865a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8669566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8679566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 868a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 869a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 870a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 871a92ad425SStefano Zampini PetscInt nnwA, nnwB; 872a92ad425SStefano Zampini PetscBool nnzA, nnzB; 873a92ad425SStefano Zampini 874a92ad425SStefano Zampini nnwA = aijA->nonew; 875a92ad425SStefano Zampini nnwB = aijB->nonew; 876a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 877a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 878a92ad425SStefano Zampini if (!nnzA) { 8799566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 880a92ad425SStefano Zampini aijA->nonew = 0; 881a92ad425SStefano Zampini } 882a92ad425SStefano Zampini if (!nnzB) { 8839566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 884a92ad425SStefano Zampini aijB->nonew = 0; 885a92ad425SStefano Zampini } 886a92ad425SStefano Zampini /* Must zero here before the next loop */ 8879566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 8889566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 8891b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 8901b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 891a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 8929566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 893e2d53e46SBarry Smith } 894a92ad425SStefano Zampini aijA->nonew = nnwA; 895a92ad425SStefano Zampini aijB->nonew = nnwB; 8966eb55b6aSBarry Smith } else { 8979566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 8989566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 8996eb55b6aSBarry Smith } 9009566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9019566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9029566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9034f9cfa9eSBarry Smith 9049939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 905f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9069939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 9079939a2d1SBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9089939a2d1SBarry Smith } 9093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9101eb62cbbSBarry Smith } 9111eb62cbbSBarry Smith 912ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 913d71ae5a4SJacob Faibussowitsch { 9149c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9155ba17502SJed Brown PetscMPIInt n = A->rmap->n; 916131c27b5Sprj- PetscInt i, j, r, m, len = 0; 91754bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 918131c27b5Sprj- PetscMPIInt p = 0; 91954bd4135SMatthew G. Knepley PetscSFNode *rrows; 92054bd4135SMatthew G. Knepley PetscSF sf; 9219c7c4993SBarry Smith const PetscScalar *xx; 922fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 923564f14d6SBarry Smith Vec xmask, lmask; 924564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 925564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 926564f14d6SBarry Smith PetscScalar *aa; 9279c7c4993SBarry Smith 9289c7c4993SBarry Smith PetscFunctionBegin; 92954bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 93154bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 93354bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 93454bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 935aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9365ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9379566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9385ba17502SJed Brown } 93954bd4135SMatthew G. Knepley rrows[r].rank = p; 94054bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9419c7c4993SBarry Smith } 9429566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9439566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 94454bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9459566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9469566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9479566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 94854bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9499371c9d4SSatish Balay for (r = 0; r < n; ++r) 9509371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 951564f14d6SBarry Smith /* zero diagonal part of matrix */ 9529566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9534cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9549566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9559566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9569566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 95754bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9589566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9599566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9609566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 962a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 963a92ad425SStefano Zampini PetscBool cong; 964a92ad425SStefano Zampini 9659566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 96628b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9679566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9689566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9699566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9709566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 971377aa5a1SBarry Smith } 9729566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9734cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 975564f14d6SBarry Smith ii = aij->i; 9768e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 977564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 978564f14d6SBarry Smith if (aij->compressedrow.use) { 979564f14d6SBarry Smith m = aij->compressedrow.nrows; 980564f14d6SBarry Smith ii = aij->compressedrow.i; 981564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 982564f14d6SBarry Smith for (i = 0; i < m; i++) { 983564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 984564f14d6SBarry Smith aj = aij->j + ii[i]; 985fff043a9SJunchao Zhang aa = aij_a + ii[i]; 986564f14d6SBarry Smith 987564f14d6SBarry Smith for (j = 0; j < n; j++) { 98825266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 989377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 990564f14d6SBarry Smith *aa = 0.0; 991564f14d6SBarry Smith } 992564f14d6SBarry Smith aa++; 993564f14d6SBarry Smith aj++; 994564f14d6SBarry Smith } 995564f14d6SBarry Smith ridx++; 996564f14d6SBarry Smith } 997564f14d6SBarry Smith } else { /* do not use compressed row format */ 998564f14d6SBarry Smith m = l->B->rmap->n; 999564f14d6SBarry Smith for (i = 0; i < m; i++) { 1000564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1001564f14d6SBarry Smith aj = aij->j + ii[i]; 1002fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1003564f14d6SBarry Smith for (j = 0; j < n; j++) { 100425266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1005377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1006564f14d6SBarry Smith *aa = 0.0; 1007564f14d6SBarry Smith } 1008564f14d6SBarry Smith aa++; 1009564f14d6SBarry Smith aj++; 1010564f14d6SBarry Smith } 1011564f14d6SBarry Smith } 1012564f14d6SBarry Smith } 1013a92ad425SStefano Zampini if (x && b) { 10149566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1016377aa5a1SBarry Smith } 10179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10189566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10199566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10209566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10214f9cfa9eSBarry Smith 10224f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1023f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10244f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 10251c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10264f9cfa9eSBarry Smith } 10273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10289c7c4993SBarry Smith } 10299c7c4993SBarry Smith 1030ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1031d71ae5a4SJacob Faibussowitsch { 1032416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1033b1d57f15SBarry Smith PetscInt nt; 103419b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1035416022c9SBarry Smith 10363a40ed3dSBarry Smith PetscFunctionBegin; 10379566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 103808401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10399566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1040296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10419566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1042296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10441eb62cbbSBarry Smith } 10451eb62cbbSBarry Smith 1046ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1047d71ae5a4SJacob Faibussowitsch { 1048bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1049bd0c2dcbSBarry Smith 1050bd0c2dcbSBarry Smith PetscFunctionBegin; 10519566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1053bd0c2dcbSBarry Smith } 1054bd0c2dcbSBarry Smith 1055ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1056d71ae5a4SJacob Faibussowitsch { 1057416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 105801ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10593a40ed3dSBarry Smith 10603a40ed3dSBarry Smith PetscFunctionBegin; 10619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10629566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10649566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1066da3a660dSBarry Smith } 1067da3a660dSBarry Smith 1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1069d71ae5a4SJacob Faibussowitsch { 1070416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1071da3a660dSBarry Smith 10723a40ed3dSBarry Smith PetscFunctionBegin; 1073da3a660dSBarry Smith /* do nondiagonal part */ 10749566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1075da3a660dSBarry Smith /* do local part */ 10769566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10779613dc34SJunchao Zhang /* add partial results together */ 10789566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10799566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1081da3a660dSBarry Smith } 1082da3a660dSBarry Smith 1083ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1084d71ae5a4SJacob Faibussowitsch { 10854f423910Svictorle MPI_Comm comm; 1086ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1087ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1088cd0d46ebSvictorle IS Me, Notme; 1089b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 109054d735aeSStefano Zampini PetscBool lf; 1091b1d57f15SBarry Smith PetscMPIInt size; 1092cd0d46ebSvictorle 1093cd0d46ebSvictorle PetscFunctionBegin; 109442e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 10959566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 10961c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 10973ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 10989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 10999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11003ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 110142e5f5b4Svictorle 11027dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11039566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11049566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1106cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1107cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11089566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11099566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11109566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 111166501d38Svictorle Aoff = Aoffs[0]; 11129566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 111366501d38Svictorle Boff = Boffs[0]; 11149566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11159566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11169566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11179566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11199566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1121cd0d46ebSvictorle } 1122cd0d46ebSvictorle 1123ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1124d71ae5a4SJacob Faibussowitsch { 1125416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1126da3a660dSBarry Smith 11273a40ed3dSBarry Smith PetscFunctionBegin; 1128da3a660dSBarry Smith /* do nondiagonal part */ 11299566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1130da3a660dSBarry Smith /* do local part */ 11319566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11329613dc34SJunchao Zhang /* add partial results together */ 11339566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11349566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1136da3a660dSBarry Smith } 1137da3a660dSBarry Smith 11381eb62cbbSBarry Smith /* 11391eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11401eb62cbbSBarry Smith diagonal block 11411eb62cbbSBarry Smith */ 1142ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1143d71ae5a4SJacob Faibussowitsch { 1144416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11453a40ed3dSBarry Smith 11463a40ed3dSBarry Smith PetscFunctionBegin; 114708401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1148aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11499566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11511eb62cbbSBarry Smith } 11521eb62cbbSBarry Smith 1153ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1154d71ae5a4SJacob Faibussowitsch { 1155052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11563a40ed3dSBarry Smith 11573a40ed3dSBarry Smith PetscFunctionBegin; 11589566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11599566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1161052efed2SBarry Smith } 1162052efed2SBarry Smith 1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1164d71ae5a4SJacob Faibussowitsch { 11658e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11668e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11678e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11683ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11692e5835c6SStefano Zampini const PetscScalar *aa, *ba; 117017a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 117117a3732bSBarry Smith PetscInt64 nz, hnz; 11723ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11733ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11743ea6fe3dSLisandro Dalcin PetscScalar *matvals; 117517a3732bSBarry Smith PetscMPIInt rank; 11768e2fed03SBarry Smith 11778e2fed03SBarry Smith PetscFunctionBegin; 11789566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11793ea6fe3dSLisandro Dalcin 11803ea6fe3dSLisandro Dalcin M = mat->rmap->N; 11813ea6fe3dSLisandro Dalcin N = mat->cmap->N; 11823ea6fe3dSLisandro Dalcin m = mat->rmap->n; 11833ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 11843ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 11858e2fed03SBarry Smith nz = A->nz + B->nz; 11863ea6fe3dSLisandro Dalcin 11873ea6fe3dSLisandro Dalcin /* write matrix header */ 11880700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 11899371c9d4SSatish Balay header[1] = M; 11909371c9d4SSatish Balay header[2] = N; 119117a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 119217a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 119338b83642SBarry Smith if (rank == 0) { 119438b83642SBarry Smith if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT; 119538b83642SBarry Smith else header[3] = (PetscInt)hnz; 119638b83642SBarry Smith } 11979566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 11988e2fed03SBarry Smith 11993ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12013ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12029566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12039566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12048e2fed03SBarry Smith 12053ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12073ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12083ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12093ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12103ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12118e2fed03SBarry Smith } 12129371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12139371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12148e2fed03SBarry Smith } 121517a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12179566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12188e2fed03SBarry Smith 12193ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12233ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12243ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12253ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12262e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12278e2fed03SBarry Smith } 12289371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12299371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12308e2fed03SBarry Smith } 12319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 123317a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12349566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12359566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12368e2fed03SBarry Smith 12373ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12389566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12408e2fed03SBarry Smith } 12418e2fed03SBarry Smith 12429804daf3SBarry Smith #include <petscdraw.h> 1243ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1244d71ae5a4SJacob Faibussowitsch { 124544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 124632dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1247ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1248b0a32e0cSBarry Smith PetscViewer sviewer; 1249f3ef73ceSBarry Smith PetscViewerFormat format; 1250416022c9SBarry Smith 12513a40ed3dSBarry Smith PetscFunctionBegin; 12529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12539566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 125532077d6dSBarry Smith if (iascii) { 12569566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1257ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 1258f4f49eeaSPierre Jolivet PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1261ef5fdb51SBarry Smith for (i = 0; i < (PetscInt)size; i++) { 1262ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1263ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1264ef5fdb51SBarry Smith navg += nz[i]; 1265ef5fdb51SBarry Smith } 12669566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1267ef5fdb51SBarry Smith navg = navg / size; 12689566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1270ef5fdb51SBarry Smith } 12719566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1272456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12734e220ebcSLois Curfman McInnes MatInfo info; 12746335e310SSatish Balay PetscInt *inodes = NULL; 1275923f20ffSKris Buschelman 12769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12779566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12789566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12799566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1280923f20ffSKris Buschelman if (!inodes) { 12819371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12829371c9d4SSatish Balay (double)info.memory)); 12836831982aSBarry Smith } else { 12849371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12859371c9d4SSatish Balay (double)info.memory)); 12866831982aSBarry Smith } 12879566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 12889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12899566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12919566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 12929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 12939566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 12949566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 12953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1296fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1297923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 12989566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1299923f20ffSKris Buschelman if (inodes) { 13009566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1301d38fa0fbSBarry Smith } else { 13029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1303d38fa0fbSBarry Smith } 13043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13054aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 130708480c60SBarry Smith } 13088e2fed03SBarry Smith } else if (isbinary) { 13098e2fed03SBarry Smith if (size == 1) { 13109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13119566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13128e2fed03SBarry Smith } else { 13139566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13148e2fed03SBarry Smith } 13153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131671e56450SStefano Zampini } else if (iascii && size == 1) { 13179566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13189566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13200f5bd95cSBarry Smith } else if (isdraw) { 1321b0a32e0cSBarry Smith PetscDraw draw; 1322ace3abfcSBarry Smith PetscBool isnull; 13239566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13249566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13253ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 132619bcc07fSBarry Smith } 132719bcc07fSBarry Smith 132871e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 132971e56450SStefano Zampini Mat A = NULL, Av; 133071e56450SStefano Zampini IS isrow, iscol; 13312ee70a88SLois Curfman McInnes 13329566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13339566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13349566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13359566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 133671e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 133771e56450SStefano Zampini /* 133871e56450SStefano Zampini Mat *AA, A = NULL, Av; 133971e56450SStefano Zampini IS isrow,iscol; 134071e56450SStefano Zampini 13419566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13429566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13439566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1344dd400576SPatrick Sanan if (rank == 0) { 13459566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 134671e56450SStefano Zampini A = AA[0]; 134771e56450SStefano Zampini Av = AA[0]; 134895373324SBarry Smith } 13499566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 135071e56450SStefano Zampini */ 13519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 135355843e3eSBarry Smith /* 135455843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1355b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 135655843e3eSBarry Smith */ 13579566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1358dd400576SPatrick Sanan if (rank == 0) { 135948a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13609566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 136195373324SBarry Smith } 13629566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13639566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 136495373324SBarry Smith } 13653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13661eb62cbbSBarry Smith } 13671eb62cbbSBarry Smith 1368d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1369d71ae5a4SJacob Faibussowitsch { 1370ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1371416022c9SBarry Smith 13723a40ed3dSBarry Smith PetscFunctionBegin; 13739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13749566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 137748a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1379416022c9SBarry Smith } 1380416022c9SBarry Smith 1381ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1382d71ae5a4SJacob Faibussowitsch { 138344a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1384f4259b30SLisandro Dalcin Vec bb1 = NULL; 1385ace3abfcSBarry Smith PetscBool hasop; 13868a729477SBarry Smith 13873a40ed3dSBarry Smith PetscFunctionBegin; 1388a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 13899566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 13903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1391a2b30743SBarry Smith } 1392a2b30743SBarry Smith 139348a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 13944e980039SJed Brown 1395c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1396da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 13979566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 13982798e883SHong Zhang its--; 1399da3a660dSBarry Smith } 14002798e883SHong Zhang 14012798e883SHong Zhang while (its--) { 14029566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14039566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14042798e883SHong Zhang 1405c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14069566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14079566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14082798e883SHong Zhang 1409c14dc6b6SHong Zhang /* local sweep */ 14109566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14112798e883SHong Zhang } 14123a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1413da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14149566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14152798e883SHong Zhang its--; 1416da3a660dSBarry Smith } 14172798e883SHong Zhang while (its--) { 14189566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14199566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14202798e883SHong Zhang 1421c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14229566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14239566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1424c14dc6b6SHong Zhang 1425c14dc6b6SHong Zhang /* local sweep */ 14269566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14272798e883SHong Zhang } 14283a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1429da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14309566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14312798e883SHong Zhang its--; 1432da3a660dSBarry Smith } 14332798e883SHong Zhang while (its--) { 14349566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14359566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14362798e883SHong Zhang 1437c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14389566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14399566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14402798e883SHong Zhang 1441c14dc6b6SHong Zhang /* local sweep */ 14429566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14432798e883SHong Zhang } 1444a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1445a7420bb7SBarry Smith Vec xx1; 1446a7420bb7SBarry Smith 14479566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14489566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1449a7420bb7SBarry Smith 14509566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14519566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1452a7420bb7SBarry Smith if (!mat->diag) { 14539566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14549566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1455a7420bb7SBarry Smith } 14569566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1457bd0c2dcbSBarry Smith if (hasop) { 14589566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1459bd0c2dcbSBarry Smith } else { 14609566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1461bd0c2dcbSBarry Smith } 14629566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1463887ee2caSBarry Smith 14649566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1465a7420bb7SBarry Smith 1466a7420bb7SBarry Smith /* local sweep */ 14679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14689566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1470ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1471c14dc6b6SHong Zhang 14729566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1473a0808db4SHong Zhang 14747b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14768a729477SBarry Smith } 1477a66be287SLois Curfman McInnes 1478ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1479d71ae5a4SJacob Faibussowitsch { 148072e6a0cfSJed Brown Mat aA, aB, Aperm; 148172e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 148272e6a0cfSJed Brown PetscScalar *aa, *ba; 148372e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 148472e6a0cfSJed Brown PetscSF rowsf, sf; 14850298fd71SBarry Smith IS parcolp = NULL; 148672e6a0cfSJed Brown PetscBool done; 148742e855d1Svictor 148842e855d1Svictor PetscFunctionBegin; 14899566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 14909566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 14919566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 14929566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 149372e6a0cfSJed Brown 149472e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 14959566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 14969566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 14979566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 149872e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 14999566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15009566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 150172e6a0cfSJed Brown 150272e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15039566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15049566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15059566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 150672e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15079566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15089566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15099566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 151072e6a0cfSJed Brown 15119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15129566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15139566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 151472e6a0cfSJed Brown 151572e6a0cfSJed Brown /* Find out where my gcols should go */ 15169566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15189566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15199566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15209566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152472e6a0cfSJed Brown 15259566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15269566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15279566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 152872e6a0cfSJed Brown for (i = 0; i < m; i++) { 1529131c27b5Sprj- PetscInt row = rdest[i]; 1530131c27b5Sprj- PetscMPIInt rowner; 15319566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 153272e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1533131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1534131c27b5Sprj- PetscMPIInt cowner; 15359566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 153672e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 153772e6a0cfSJed Brown else onnz[i]++; 153872e6a0cfSJed Brown } 153972e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1540131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1541131c27b5Sprj- PetscMPIInt cowner; 15429566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 154372e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 154472e6a0cfSJed Brown else onnz[i]++; 154572e6a0cfSJed Brown } 154672e6a0cfSJed Brown } 15479566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15489566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15509566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15519566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 155272e6a0cfSJed Brown 15539566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 155672e6a0cfSJed Brown for (i = 0; i < m; i++) { 155772e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1558970468b0SJed Brown PetscInt j0, rowlen; 155972e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1560970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1561970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15629566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1563970468b0SJed Brown } 156472e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1565970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1566970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15679566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1568970468b0SJed Brown } 156972e6a0cfSJed Brown } 15709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15729566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15739566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15769566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15779566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15789566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15799566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 158072e6a0cfSJed Brown *B = Aperm; 15813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 158242e855d1Svictor } 158342e855d1Svictor 1584ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1585d71ae5a4SJacob Faibussowitsch { 1586c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1587c5e4d11fSDmitry Karpeev 1588c5e4d11fSDmitry Karpeev PetscFunctionBegin; 15899566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1590c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 15913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1592c5e4d11fSDmitry Karpeev } 1593c5e4d11fSDmitry Karpeev 1594ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1595d71ae5a4SJacob Faibussowitsch { 1596a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1597a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 15983966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1599a66be287SLois Curfman McInnes 16003a40ed3dSBarry Smith PetscFunctionBegin; 16014e220ebcSLois Curfman McInnes info->block_size = 1.0; 16029566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16032205254eSKarl Rupp 16049371c9d4SSatish Balay isend[0] = info->nz_used; 16059371c9d4SSatish Balay isend[1] = info->nz_allocated; 16069371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16079371c9d4SSatish Balay isend[3] = info->memory; 16089371c9d4SSatish Balay isend[4] = info->mallocs; 16092205254eSKarl Rupp 16109566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16112205254eSKarl Rupp 16129371c9d4SSatish Balay isend[0] += info->nz_used; 16139371c9d4SSatish Balay isend[1] += info->nz_allocated; 16149371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16159371c9d4SSatish Balay isend[3] += info->memory; 16169371c9d4SSatish Balay isend[4] += info->mallocs; 1617a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16184e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16194e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16204e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16214e220ebcSLois Curfman McInnes info->memory = isend[3]; 16224e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1623a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 16241c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16252205254eSKarl Rupp 16264e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16274e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16284e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16294e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16304e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1631a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 16321c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16332205254eSKarl Rupp 16344e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16354e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16364e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16374e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16384e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1639a66be287SLois Curfman McInnes } 16404e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16414e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16424e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1644a66be287SLois Curfman McInnes } 1645a66be287SLois Curfman McInnes 1646d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1647d71ae5a4SJacob Faibussowitsch { 1648c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1649c74985f6SBarry Smith 16503a40ed3dSBarry Smith PetscFunctionBegin; 165112c028f9SKris Buschelman switch (op) { 1652512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 165312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 165428b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1655a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 165612c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16570ad02fcaSStefano Zampini case MAT_USE_INODES: 165812c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16591a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1660fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16619566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16629566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 166312c028f9SKris Buschelman break; 166412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 166543674050SBarry Smith MatCheckPreallocated(A, 1); 16664e0d8c25SBarry Smith a->roworiented = flg; 16672205254eSKarl Rupp 16689566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16699566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 167012c028f9SKris Buschelman break; 16718c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1672d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1673d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1674d71ae5a4SJacob Faibussowitsch break; 1675d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1676d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1677d71ae5a4SJacob Faibussowitsch break; 1678c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1679ffa07934SHong Zhang case MAT_SPD: 168077e54ba9SKris Buschelman case MAT_SYMMETRIC: 168177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1682bf108f30SBarry Smith case MAT_HERMITIAN: 1683bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1684b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1685b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1686b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 168777e54ba9SKris Buschelman break; 1688d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1689d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1690d71ae5a4SJacob Faibussowitsch break; 1691957cac9fSHong Zhang case MAT_STRUCTURE_ONLY: 1692957cac9fSHong Zhang /* The option is handled directly by MatSetOption() */ 1693957cac9fSHong Zhang break; 1694d71ae5a4SJacob Faibussowitsch default: 1695d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 16963a40ed3dSBarry Smith } 16973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1698c74985f6SBarry Smith } 1699c74985f6SBarry Smith 1700d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1701d71ae5a4SJacob Faibussowitsch { 1702154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 170387828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1704d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1705d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1706b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 170739e00950SLois Curfman McInnes 17083a40ed3dSBarry Smith PetscFunctionBegin; 170928b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17107a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17117a0afa10SBarry Smith 171270f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17137a0afa10SBarry Smith /* 17147a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17157a0afa10SBarry Smith */ 17167a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1717b1d57f15SBarry Smith PetscInt max = 1, tmp; 1718d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17197a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17202205254eSKarl Rupp if (max < tmp) max = tmp; 17217a0afa10SBarry Smith } 17229566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17237a0afa10SBarry Smith } 17247a0afa10SBarry Smith 1725aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1726abc0e9e4SLois Curfman McInnes lrow = row - rstart; 172739e00950SLois Curfman McInnes 17289371c9d4SSatish Balay pvA = &vworkA; 17299371c9d4SSatish Balay pcA = &cworkA; 17309371c9d4SSatish Balay pvB = &vworkB; 17319371c9d4SSatish Balay pcB = &cworkB; 17329371c9d4SSatish Balay if (!v) { 17339371c9d4SSatish Balay pvA = NULL; 17349371c9d4SSatish Balay pvB = NULL; 17359371c9d4SSatish Balay } 17369371c9d4SSatish Balay if (!idx) { 17379371c9d4SSatish Balay pcA = NULL; 17389371c9d4SSatish Balay if (!v) pcB = NULL; 17399371c9d4SSatish Balay } 17409566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17419566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1742154123eaSLois Curfman McInnes nztot = nzA + nzB; 1743154123eaSLois Curfman McInnes 174470f0671dSBarry Smith cmap = mat->garray; 1745154123eaSLois Curfman McInnes if (v || idx) { 1746154123eaSLois Curfman McInnes if (nztot) { 1747154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1748b1d57f15SBarry Smith PetscInt imark = -1; 1749154123eaSLois Curfman McInnes if (v) { 175070f0671dSBarry Smith *v = v_p = mat->rowvalues; 175139e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 175270f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1753154123eaSLois Curfman McInnes else break; 1754154123eaSLois Curfman McInnes } 1755154123eaSLois Curfman McInnes imark = i; 175670f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 175770f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1758154123eaSLois Curfman McInnes } 1759154123eaSLois Curfman McInnes if (idx) { 176070f0671dSBarry Smith *idx = idx_p = mat->rowindices; 176170f0671dSBarry Smith if (imark > -1) { 1762ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 176370f0671dSBarry Smith } else { 1764154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 176570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1766154123eaSLois Curfman McInnes else break; 1767154123eaSLois Curfman McInnes } 1768154123eaSLois Curfman McInnes imark = i; 176970f0671dSBarry Smith } 177070f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 177170f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 177239e00950SLois Curfman McInnes } 17733f97c4b0SBarry Smith } else { 1774f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1775f4259b30SLisandro Dalcin if (v) *v = NULL; 17761ca473b0SSatish Balay } 1777154123eaSLois Curfman McInnes } 177839e00950SLois Curfman McInnes *nz = nztot; 17799566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17809566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 178239e00950SLois Curfman McInnes } 178339e00950SLois Curfman McInnes 1784d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1785d71ae5a4SJacob Faibussowitsch { 17867a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 17873a40ed3dSBarry Smith 17883a40ed3dSBarry Smith PetscFunctionBegin; 178928b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 17907a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 17913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179239e00950SLois Curfman McInnes } 179339e00950SLois Curfman McInnes 1794ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1795d71ae5a4SJacob Faibussowitsch { 1796855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1797ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1798d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1799329f5518SBarry Smith PetscReal sum = 0.0; 1800fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 180104ca555eSLois Curfman McInnes 18023a40ed3dSBarry Smith PetscFunctionBegin; 180317699dbbSLois Curfman McInnes if (aij->size == 1) { 18049566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 180537fa93a5SLois Curfman McInnes } else { 18069566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18079566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 180804ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1809fff043a9SJunchao Zhang v = amata; 181004ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18119371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18129371c9d4SSatish Balay v++; 181304ca555eSLois Curfman McInnes } 1814fff043a9SJunchao Zhang v = bmata; 181504ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18169371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18179371c9d4SSatish Balay v++; 181804ca555eSLois Curfman McInnes } 18191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18208f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18219566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18223a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1823329f5518SBarry Smith PetscReal *tmp, *tmp2; 1824b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18259566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 18269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2)); 182704ca555eSLois Curfman McInnes *norm = 0.0; 18289371c9d4SSatish Balay v = amata; 18299371c9d4SSatish Balay jj = amat->j; 183004ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18319371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18329371c9d4SSatish Balay v++; 183304ca555eSLois Curfman McInnes } 18349371c9d4SSatish Balay v = bmata; 18359371c9d4SSatish Balay jj = bmat->j; 183604ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18379371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18389371c9d4SSatish Balay v++; 183904ca555eSLois Curfman McInnes } 18401c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1841d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 184204ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 184304ca555eSLois Curfman McInnes } 18449566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18459566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 18469566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18473a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1848329f5518SBarry Smith PetscReal ntemp = 0.0; 1849d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18508e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 185104ca555eSLois Curfman McInnes sum = 0.0; 185204ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18539371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18549371c9d4SSatish Balay v++; 185504ca555eSLois Curfman McInnes } 18568e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 185704ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18589371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18599371c9d4SSatish Balay v++; 186004ca555eSLois Curfman McInnes } 1861515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 186204ca555eSLois Curfman McInnes } 18631c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18649566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1865ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 186837fa93a5SLois Curfman McInnes } 18693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1870855ac2c5SLois Curfman McInnes } 1871855ac2c5SLois Curfman McInnes 1872ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1873d71ae5a4SJacob Faibussowitsch { 1874a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1875a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1876071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1877071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1878a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1879ce496241SStefano Zampini const MatScalar *pbv, *bv; 1880b7c46309SBarry Smith 18813a40ed3dSBarry Smith PetscFunctionBegin; 18827fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18839371c9d4SSatish Balay ma = A->rmap->n; 18849371c9d4SSatish Balay na = A->cmap->n; 18859371c9d4SSatish Balay mb = a->B->rmap->n; 18869371c9d4SSatish Balay nb = a->B->cmap->n; 18879371c9d4SSatish Balay ai = Aloc->i; 18889371c9d4SSatish Balay aj = Aloc->j; 18899371c9d4SSatish Balay bi = Bloc->i; 18909371c9d4SSatish Balay bj = Bloc->j; 1891fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 189280bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 189380bcc5a1SJed Brown PetscSFNode *oloc; 1894713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 189580bcc5a1SJed Brown 18969566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 189780bcc5a1SJed Brown /* compute d_nnz for preallocation */ 18989566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1899cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 190080bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19019566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 190280bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 190380bcc5a1SJed Brown /* map those to global */ 19049566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19059566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19069566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19079566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 190857168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 190957168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19109566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1911d4bb536fSBarry Smith 19129566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 19149566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 19159566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19169566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19179566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1918fc4dec0aSBarry Smith } else { 1919fc4dec0aSBarry Smith B = *matout; 19209566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1921fc4dec0aSBarry Smith } 1922b7c46309SBarry Smith 1923f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1924a8661f62Sandi selinger A_diag = a->A; 1925a8661f62Sandi selinger B_diag = &b->A; 1926a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1927a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1928a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1929a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1930f79cb1a0Sandi selinger 1931f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1932ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1933f79cb1a0Sandi selinger 19344cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1935a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19367fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19379566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1938f79cb1a0Sandi selinger 1939b7c46309SBarry Smith /* copy over the B part */ 19409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1942ce496241SStefano Zampini pbv = bv; 1943d0f46423SBarry Smith row = A->rmap->rstart; 19442205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 194561a2fbbaSHong Zhang cols_tmp = cols; 1946da668accSHong Zhang for (i = 0; i < mb; i++) { 1947da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19489566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19492205254eSKarl Rupp row++; 1950720a2405SPierre Jolivet if (pbv) pbv += ncol; 1951720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1952b7c46309SBarry Smith } 19539566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1955fc73b1b3SBarry Smith 19569566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19579566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1958cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19590de55854SLois Curfman McInnes *matout = B; 19600de55854SLois Curfman McInnes } else { 19619566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19620de55854SLois Curfman McInnes } 19633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1964b7c46309SBarry Smith } 1965b7c46309SBarry Smith 1966ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1967d71ae5a4SJacob Faibussowitsch { 19684b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19694b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1970b1d57f15SBarry Smith PetscInt s1, s2, s3; 1971a008b906SSatish Balay 19723a40ed3dSBarry Smith PetscFunctionBegin; 19739566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19744b967eb1SSatish Balay if (rr) { 19759566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 197608401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19774b967eb1SSatish Balay /* Overlap communication with computation. */ 19789566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1979a008b906SSatish Balay } 19804b967eb1SSatish Balay if (ll) { 19819566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 198208401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1983dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19844b967eb1SSatish Balay } 19854b967eb1SSatish Balay /* scale the diagonal block */ 1986dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19874b967eb1SSatish Balay 19884b967eb1SSatish Balay if (rr) { 19894b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 19909566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1991dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 19924b967eb1SSatish Balay } 19933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1994a008b906SSatish Balay } 1995a008b906SSatish Balay 1996ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 1997d71ae5a4SJacob Faibussowitsch { 1998bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 19993a40ed3dSBarry Smith 20003a40ed3dSBarry Smith PetscFunctionBegin; 20019566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2003bb5a7306SBarry Smith } 2004bb5a7306SBarry Smith 2005ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2006d71ae5a4SJacob Faibussowitsch { 2007d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2008d4bb536fSBarry Smith Mat a, b, c, d; 2009ace3abfcSBarry Smith PetscBool flg; 2010d4bb536fSBarry Smith 20113a40ed3dSBarry Smith PetscFunctionBegin; 20129371c9d4SSatish Balay a = matA->A; 20139371c9d4SSatish Balay b = matA->B; 20149371c9d4SSatish Balay c = matB->A; 20159371c9d4SSatish Balay d = matB->B; 2016d4bb536fSBarry Smith 20179566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 201848a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 20191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2021d4bb536fSBarry Smith } 2022d4bb536fSBarry Smith 2023ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2024d71ae5a4SJacob Faibussowitsch { 2025cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2026cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2027cb5b572fSBarry Smith 2028cb5b572fSBarry Smith PetscFunctionBegin; 202933f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 203033f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2031cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2032cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2033cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2034cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2035cb5b572fSBarry Smith then copying the submatrices */ 20369566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2037cb5b572fSBarry Smith } else { 20389566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20399566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2040cb5b572fSBarry Smith } 20419566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2043cb5b572fSBarry Smith } 2044cb5b572fSBarry Smith 2045001ddc4fSHong Zhang /* 2046001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2047001ddc4fSHong Zhang have different nonzero structure. 2048001ddc4fSHong Zhang */ 2049d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2050d71ae5a4SJacob Faibussowitsch { 2051001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 205295b7e79eSJed Brown 205395b7e79eSJed Brown PetscFunctionBegin; 205495b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 205595b7e79eSJed Brown for (i = 0; i < m; i++) { 20568e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2057001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2058001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 205995b7e79eSJed Brown nnz[i] = 0; 206095b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2061001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2062001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 206395b7e79eSJed Brown nnz[i]++; 206495b7e79eSJed Brown } 206595b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 206695b7e79eSJed Brown } 20673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 206895b7e79eSJed Brown } 206995b7e79eSJed Brown 2070001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2071d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2072d71ae5a4SJacob Faibussowitsch { 2073001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2074001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2075001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2076001ddc4fSHong Zhang 2077001ddc4fSHong Zhang PetscFunctionBegin; 20789566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2080001ddc4fSHong Zhang } 2081001ddc4fSHong Zhang 2082ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2083d71ae5a4SJacob Faibussowitsch { 2084ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2085ac90fabeSBarry Smith 2086ac90fabeSBarry Smith PetscFunctionBegin; 2087ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20889566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 20899566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2090ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 20919566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2092ac90fabeSBarry Smith } else { 20939f5f6813SShri Abhyankar Mat B; 20949f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2095d9d719b4SStefano Zampini 20969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 20979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 20989566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 20999566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21009566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21019566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21029566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21039566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21049566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21059566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21069566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21079566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21089566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2109ac90fabeSBarry Smith } 21103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2111ac90fabeSBarry Smith } 2112ac90fabeSBarry Smith 21132726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2114354c94deSBarry Smith 2115ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2116d71ae5a4SJacob Faibussowitsch { 21175f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21185f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2119354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2120354c94deSBarry Smith 21219566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21229566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21235f80ce2aSJacob Faibussowitsch } 21243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2125354c94deSBarry Smith } 2126354c94deSBarry Smith 2127ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2128d71ae5a4SJacob Faibussowitsch { 212999cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 213099cafbc1SBarry Smith 213199cafbc1SBarry Smith PetscFunctionBegin; 21329566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21339566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 213599cafbc1SBarry Smith } 213699cafbc1SBarry Smith 2137ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2138d71ae5a4SJacob Faibussowitsch { 213999cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214099cafbc1SBarry Smith 214199cafbc1SBarry Smith PetscFunctionBegin; 21429566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21439566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214599cafbc1SBarry Smith } 214699cafbc1SBarry Smith 2147ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2148d71ae5a4SJacob Faibussowitsch { 2149c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2150475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 2151475b8b61SHong Zhang PetscScalar *va, *vv; 2152475b8b61SHong Zhang Vec vB, vA; 2153475b8b61SHong Zhang const PetscScalar *vb; 2154c91732d9SHong Zhang 2155c91732d9SHong Zhang PetscFunctionBegin; 21569566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 21579566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2158475b8b61SHong Zhang 21599566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 2160c91732d9SHong Zhang if (idx) { 2161475b8b61SHong Zhang for (i = 0; i < m; i++) { 2162d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2163c91732d9SHong Zhang } 2164c91732d9SHong Zhang } 2165c91732d9SHong Zhang 21669566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 21679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21689566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2169c91732d9SHong Zhang 21709566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21719566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2172475b8b61SHong Zhang for (i = 0; i < m; i++) { 2173c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2174475b8b61SHong Zhang vv[i] = vb[i]; 2175c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2176475b8b61SHong Zhang } else { 2177475b8b61SHong Zhang vv[i] = va[i]; 21789371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2179c91732d9SHong Zhang } 2180c91732d9SHong Zhang } 21819566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 21829566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 21839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21849566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2188c91732d9SHong Zhang } 2189c91732d9SHong Zhang 2190eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2191eede4a3fSMark Adams { 2192eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2193eede4a3fSMark Adams PetscInt m = A->rmap->n; 2194eede4a3fSMark Adams Vec vB, vA; 2195eede4a3fSMark Adams 2196eede4a3fSMark Adams PetscFunctionBegin; 2197eede4a3fSMark Adams PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 2198eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2199eede4a3fSMark Adams PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 2200eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2201eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2202eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2203eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2204eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2205eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2206eede4a3fSMark Adams } 2207eede4a3fSMark Adams 2208ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2209d71ae5a4SJacob Faibussowitsch { 2210f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2211f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2212f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2213f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2214f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2215f07e67edSHong Zhang Vec diagV, offdiagV; 2216ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2217ce496241SStefano Zampini const PetscScalar *ba, *bav; 2218f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2219f07e67edSHong Zhang Mat B = mat->B; 2220f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2221c87e5d42SMatthew Knepley 2222c87e5d42SMatthew Knepley PetscFunctionBegin; 2223f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2224f07e67edSHong Zhang if (A->cmap->N == n) { 22259566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22269566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22279566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22299566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2231f07e67edSHong Zhang } else if (n == 0) { 2232f07e67edSHong Zhang if (m) { 22339566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22349371c9d4SSatish Balay for (r = 0; r < m; r++) { 22359371c9d4SSatish Balay a[r] = 0.0; 22369371c9d4SSatish Balay if (idx) idx[r] = -1; 22379371c9d4SSatish Balay } 22389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2239f07e67edSHong Zhang } 22403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2241f07e67edSHong Zhang } 2242f07e67edSHong Zhang 22439566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22449566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22459566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22469566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2247f07e67edSHong Zhang 2248f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22499566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2250ce496241SStefano Zampini ba = bav; 2251f07e67edSHong Zhang bi = b->i; 2252f07e67edSHong Zhang bj = b->j; 22539566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2254f07e67edSHong Zhang for (r = 0; r < m; r++) { 2255f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2256f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22579371c9d4SSatish Balay offdiagA[r] = *ba; 22589371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2259f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2260f07e67edSHong Zhang offdiagA[r] = 0.0; 2261f07e67edSHong Zhang 2262f07e67edSHong Zhang /* Find first hole in the cmap */ 2263f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2264f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2265f07e67edSHong Zhang if (col > j && j < cstart) { 2266f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2267f07e67edSHong Zhang break; 2268f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2269f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2270f07e67edSHong Zhang break; 2271f07e67edSHong Zhang } 2272f07e67edSHong Zhang } 22734e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2274f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2275f07e67edSHong Zhang if (ncols == 0) { 2276f07e67edSHong Zhang if (cstart) { 2277f07e67edSHong Zhang offdiagIdx[r] = 0; 2278f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2279f07e67edSHong Zhang } else { /* ncols > 0 */ 2280f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2281f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2282f07e67edSHong Zhang } 2283f07e67edSHong Zhang } 2284f07e67edSHong Zhang } 2285f07e67edSHong Zhang 2286f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22879371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22889371c9d4SSatish Balay offdiagA[r] = *ba; 22899371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 22909371c9d4SSatish Balay } 22919371c9d4SSatish Balay ba++; 22929371c9d4SSatish Balay bj++; 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang } 2295f07e67edSHong Zhang 22969566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22979566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2298f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2299f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2300f07e67edSHong Zhang a[r] = diagA[r]; 2301f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2302f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2303f07e67edSHong Zhang a[r] = diagA[r]; 2304c87e5d42SMatthew Knepley if (idx) { 2305f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2306f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2307f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2308f07e67edSHong Zhang } 2309f07e67edSHong Zhang } else { 2310f07e67edSHong Zhang a[r] = offdiagA[r]; 2311f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2312c87e5d42SMatthew Knepley } 2313c87e5d42SMatthew Knepley } 23149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23169566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23189566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23199566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23209566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2322c87e5d42SMatthew Knepley } 2323c87e5d42SMatthew Knepley 2324ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2325d71ae5a4SJacob Faibussowitsch { 232603bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2327fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2328fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 232903bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 233003bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 233103bc72f1SMatthew Knepley Vec diagV, offdiagV; 2332ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2333ce496241SStefano Zampini const PetscScalar *ba, *bav; 2334fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2335fa213d2fSHong Zhang Mat B = mat->B; 2336fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 233703bc72f1SMatthew Knepley 233803bc72f1SMatthew Knepley PetscFunctionBegin; 2339fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2340fa213d2fSHong Zhang if (A->cmap->N == n) { 23419566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23429566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23439566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2347fa213d2fSHong Zhang } else if (n == 0) { 2348fa213d2fSHong Zhang if (m) { 23499566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23509371c9d4SSatish Balay for (r = 0; r < m; r++) { 23519371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23529371c9d4SSatish Balay if (idx) idx[r] = -1; 23539371c9d4SSatish Balay } 23549566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2355fa213d2fSHong Zhang } 23563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2357fa213d2fSHong Zhang } 2358fa213d2fSHong Zhang 23599566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23609566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23619566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23629566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2363fa213d2fSHong Zhang 2364fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2366ce496241SStefano Zampini ba = bav; 2367fa213d2fSHong Zhang bi = b->i; 2368fa213d2fSHong Zhang bj = b->j; 23699566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2370fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2371fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2372fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23739371c9d4SSatish Balay offdiagA[r] = *ba; 23749371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2375fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2376fa213d2fSHong Zhang offdiagA[r] = 0.0; 2377fa213d2fSHong Zhang 2378fa213d2fSHong Zhang /* Find first hole in the cmap */ 2379fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2380fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2381fa213d2fSHong Zhang if (col > j && j < cstart) { 2382fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2383fa213d2fSHong Zhang break; 2384fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2385fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2386fa213d2fSHong Zhang break; 2387fa213d2fSHong Zhang } 2388fa213d2fSHong Zhang } 23894e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2390fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2391fa213d2fSHong Zhang if (ncols == 0) { 2392fa213d2fSHong Zhang if (cstart) { 2393fa213d2fSHong Zhang offdiagIdx[r] = 0; 2394fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2395fa213d2fSHong Zhang } else { /* ncols > 0 */ 2396fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2397fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2398fa213d2fSHong Zhang } 2399fa213d2fSHong Zhang } 2400fa213d2fSHong Zhang } 2401fa213d2fSHong Zhang 2402fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24039371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24049371c9d4SSatish Balay offdiagA[r] = *ba; 24059371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24069371c9d4SSatish Balay } 24079371c9d4SSatish Balay ba++; 24089371c9d4SSatish Balay bj++; 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang } 2411fa213d2fSHong Zhang 24129566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24139566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2414fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2415fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 241603bc72f1SMatthew Knepley a[r] = diagA[r]; 2417fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2418fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2419fa213d2fSHong Zhang a[r] = diagA[r]; 2420fa213d2fSHong Zhang if (idx) { 2421fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 242203bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2423fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2424fa213d2fSHong Zhang } 242503bc72f1SMatthew Knepley } else { 242603bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2427fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 242803bc72f1SMatthew Knepley } 242903bc72f1SMatthew Knepley } 24309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24319566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24329566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24339566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24349566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24359566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24369566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243803bc72f1SMatthew Knepley } 243903bc72f1SMatthew Knepley 2440ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2441d71ae5a4SJacob Faibussowitsch { 2442c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24431a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24441a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2445c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2446c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2447c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2448ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2449ce496241SStefano Zampini const PetscScalar *ba, *bav; 24501a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24511a254869SHong Zhang Mat B = mat->B; 24521a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2453c87e5d42SMatthew Knepley 2454c87e5d42SMatthew Knepley PetscFunctionBegin; 24551a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24561a254869SHong Zhang if (A->cmap->N == n) { 24579566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24589566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24599566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24619566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24631a254869SHong Zhang } else if (n == 0) { 24641a254869SHong Zhang if (m) { 24659566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24669371c9d4SSatish Balay for (r = 0; r < m; r++) { 24679371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24689371c9d4SSatish Balay if (idx) idx[r] = -1; 24699371c9d4SSatish Balay } 24709566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24711a254869SHong Zhang } 24723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24731a254869SHong Zhang } 24741a254869SHong Zhang 24759566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24769566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24779566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24789566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24791a254869SHong Zhang 24801a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24819566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2482ce496241SStefano Zampini ba = bav; 24831a254869SHong Zhang bi = b->i; 24841a254869SHong Zhang bj = b->j; 24859566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24861a254869SHong Zhang for (r = 0; r < m; r++) { 24871a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24881a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24899371c9d4SSatish Balay offdiagA[r] = *ba; 24909371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 24911a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 24921a254869SHong Zhang offdiagA[r] = 0.0; 24931a254869SHong Zhang 24941a254869SHong Zhang /* Find first hole in the cmap */ 24951a254869SHong Zhang for (j = 0; j < ncols; j++) { 24961a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 24971a254869SHong Zhang if (col > j && j < cstart) { 24981a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 24991a254869SHong Zhang break; 25001a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25011a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25021a254869SHong Zhang break; 25031a254869SHong Zhang } 25041a254869SHong Zhang } 25054e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25061a254869SHong Zhang /* a hole is outside compressed Bcols */ 25071a254869SHong Zhang if (ncols == 0) { 25081a254869SHong Zhang if (cstart) { 25091a254869SHong Zhang offdiagIdx[r] = 0; 25101a254869SHong Zhang } else offdiagIdx[r] = cend; 25111a254869SHong Zhang } else { /* ncols > 0 */ 25121a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25131a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25141a254869SHong Zhang } 25151a254869SHong Zhang } 25161a254869SHong Zhang } 25171a254869SHong Zhang 25181a254869SHong Zhang for (j = 0; j < ncols; j++) { 25199371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25209371c9d4SSatish Balay offdiagA[r] = *ba; 25219371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25229371c9d4SSatish Balay } 25239371c9d4SSatish Balay ba++; 25249371c9d4SSatish Balay bj++; 25251a254869SHong Zhang } 25261a254869SHong Zhang } 25271a254869SHong Zhang 25289566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25299566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25301a254869SHong Zhang for (r = 0; r < m; ++r) { 25311a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2532c87e5d42SMatthew Knepley a[r] = diagA[r]; 25331a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25341a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25351a254869SHong Zhang a[r] = diagA[r]; 25361a254869SHong Zhang if (idx) { 25371a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2538c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25391a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25401a254869SHong Zhang } 2541c87e5d42SMatthew Knepley } else { 2542c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25431a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2544c87e5d42SMatthew Knepley } 2545c87e5d42SMatthew Knepley } 25469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25499566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25529566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2554c87e5d42SMatthew Knepley } 2555c87e5d42SMatthew Knepley 2556d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2557d71ae5a4SJacob Faibussowitsch { 2558f6d58c54SBarry Smith Mat *dummy; 25595494a064SHong Zhang 25605494a064SHong Zhang PetscFunctionBegin; 25619566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2562f6d58c54SBarry Smith *newmat = *dummy; 25639566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25655494a064SHong Zhang } 25665494a064SHong Zhang 2567ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2568d71ae5a4SJacob Faibussowitsch { 2569bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2570bbead8a2SBarry Smith 2571bbead8a2SBarry Smith PetscFunctionBegin; 25729566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25737b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2575bbead8a2SBarry Smith } 2576bbead8a2SBarry Smith 2577d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2578d71ae5a4SJacob Faibussowitsch { 257973a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 258073a71a0fSBarry Smith 258173a71a0fSBarry Smith PetscFunctionBegin; 258208401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25839566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2584679944adSJunchao Zhang if (x->assembled) { 25859566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2586679944adSJunchao Zhang } else { 25879566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2588679944adSJunchao Zhang } 25899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 25909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 25913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 259273a71a0fSBarry Smith } 2593bbead8a2SBarry Smith 2594ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2595d71ae5a4SJacob Faibussowitsch { 2596b1b1104fSBarry Smith PetscFunctionBegin; 2597b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2598b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 25993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2600b1b1104fSBarry Smith } 2601b1b1104fSBarry Smith 2602b1b1104fSBarry Smith /*@ 2603f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2604f2afee66SBarry Smith 26052ef1f0ffSBarry Smith Not Collective 2606f2afee66SBarry Smith 2607f2afee66SBarry Smith Input Parameter: 2608f2afee66SBarry Smith . A - the matrix 2609f2afee66SBarry Smith 2610f2afee66SBarry Smith Output Parameter: 2611f2afee66SBarry Smith . nz - the number of nonzeros 2612f2afee66SBarry Smith 2613f2afee66SBarry Smith Level: advanced 2614f2afee66SBarry Smith 2615fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2616f2afee66SBarry Smith @*/ 2617d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2618d71ae5a4SJacob Faibussowitsch { 2619f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2620f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2621dfebb78cSStefano Zampini PetscBool isaij; 2622f2afee66SBarry Smith 2623f2afee66SBarry Smith PetscFunctionBegin; 2624dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2625dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2626f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2628f2afee66SBarry Smith } 2629f2afee66SBarry Smith 2630f2afee66SBarry Smith /*@ 2631b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2632b1b1104fSBarry Smith 2633c3339decSBarry Smith Collective 2634b1b1104fSBarry Smith 2635b1b1104fSBarry Smith Input Parameters: 2636b1b1104fSBarry Smith + A - the matrix 263711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2638b1b1104fSBarry Smith 263996a0c994SBarry Smith Level: advanced 264096a0c994SBarry Smith 2641fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2642b1b1104fSBarry Smith @*/ 2643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2644d71ae5a4SJacob Faibussowitsch { 2645b1b1104fSBarry Smith PetscFunctionBegin; 2646cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2648b1b1104fSBarry Smith } 2649b1b1104fSBarry Smith 2650d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject) 2651d71ae5a4SJacob Faibussowitsch { 2652b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2653b1b1104fSBarry Smith 2654b1b1104fSBarry Smith PetscFunctionBegin; 2655d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2656b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26579566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26581baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2659d0609cedSBarry Smith PetscOptionsHeadEnd(); 26603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2661b1b1104fSBarry Smith } 2662b1b1104fSBarry Smith 2663ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2664d71ae5a4SJacob Faibussowitsch { 26657d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2666c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26677d68702bSBarry Smith 26687d68702bSBarry Smith PetscFunctionBegin; 2669c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26709566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26715519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2672b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2674b83222d8SBarry Smith aij->nonew = nonew; 26757d68702bSBarry Smith } 26769566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26787d68702bSBarry Smith } 26797d68702bSBarry Smith 2680ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2681d71ae5a4SJacob Faibussowitsch { 26823b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26833b49f96aSBarry Smith 26843b49f96aSBarry Smith PetscFunctionBegin; 268508401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26869566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26873b49f96aSBarry Smith if (d) { 26883b49f96aSBarry Smith PetscInt rstart; 26899566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 26903b49f96aSBarry Smith *d += rstart; 26913b49f96aSBarry Smith } 26923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26933b49f96aSBarry Smith } 26943b49f96aSBarry Smith 2695ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2696d71ae5a4SJacob Faibussowitsch { 2697a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2698a8ee9fb5SBarry Smith 2699a8ee9fb5SBarry Smith PetscFunctionBegin; 27009566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2702a8ee9fb5SBarry Smith } 27033b49f96aSBarry Smith 270458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2705dec0b466SHong Zhang { 2706dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2707dec0b466SHong Zhang 2708dec0b466SHong Zhang PetscFunctionBegin; 270958c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 271058c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2712dec0b466SHong Zhang } 2713dec0b466SHong Zhang 2714cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2715cda55fadSBarry Smith MatGetRow_MPIAIJ, 2716cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2717cda55fadSBarry Smith MatMult_MPIAIJ, 271897304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27197c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27207c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2721f4259b30SLisandro Dalcin NULL, 2722f4259b30SLisandro Dalcin NULL, 2723f4259b30SLisandro Dalcin NULL, 2724f4259b30SLisandro Dalcin /*10*/ NULL, 2725f4259b30SLisandro Dalcin NULL, 2726f4259b30SLisandro Dalcin NULL, 272741f059aeSBarry Smith MatSOR_MPIAIJ, 2728b7c46309SBarry Smith MatTranspose_MPIAIJ, 272997304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2730cda55fadSBarry Smith MatEqual_MPIAIJ, 2731cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2732cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2733cda55fadSBarry Smith MatNorm_MPIAIJ, 273497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2735cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2736cda55fadSBarry Smith MatSetOption_MPIAIJ, 2737cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2738d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2739f4259b30SLisandro Dalcin NULL, 2740f4259b30SLisandro Dalcin NULL, 2741f4259b30SLisandro Dalcin NULL, 2742f4259b30SLisandro Dalcin NULL, 274326cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2744f4259b30SLisandro Dalcin NULL, 2745f4259b30SLisandro Dalcin NULL, 2746a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2747f4259b30SLisandro Dalcin NULL, 2748d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2749f4259b30SLisandro Dalcin NULL, 2750f4259b30SLisandro Dalcin NULL, 2751f4259b30SLisandro Dalcin NULL, 2752f4259b30SLisandro Dalcin NULL, 2753d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27547dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2755cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2756cda55fadSBarry Smith MatGetValues_MPIAIJ, 2757cb5b572fSBarry Smith MatCopy_MPIAIJ, 2758d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2759cda55fadSBarry Smith MatScale_MPIAIJ, 27607d68702bSBarry Smith MatShift_MPIAIJ, 276199e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2762564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 276373a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27648a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27658a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2766f4259b30SLisandro Dalcin NULL, 2767f4259b30SLisandro Dalcin NULL, 276893dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2769f4259b30SLisandro Dalcin NULL, 2770cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 277172e6a0cfSJed Brown MatPermute_MPIAIJ, 2772f4259b30SLisandro Dalcin NULL, 27737dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2774e03a110bSBarry Smith MatDestroy_MPIAIJ, 2775e03a110bSBarry Smith MatView_MPIAIJ, 2776f4259b30SLisandro Dalcin NULL, 2777f4259b30SLisandro Dalcin NULL, 2778f4259b30SLisandro Dalcin /*64*/ NULL, 2779f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2780f4259b30SLisandro Dalcin NULL, 2781f4259b30SLisandro Dalcin NULL, 2782f4259b30SLisandro Dalcin NULL, 2783d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2784c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2785f4259b30SLisandro Dalcin NULL, 2786f4259b30SLisandro Dalcin NULL, 2787f4259b30SLisandro Dalcin NULL, 2788f4259b30SLisandro Dalcin NULL, 27893acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2790b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2791f4259b30SLisandro Dalcin NULL, 2792f4259b30SLisandro Dalcin NULL, 2793f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2794f4259b30SLisandro Dalcin /*80*/ NULL, 2795f4259b30SLisandro Dalcin NULL, 2796f4259b30SLisandro Dalcin NULL, 27975bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 27986cff0a6bSPierre Jolivet NULL, 2799f4259b30SLisandro Dalcin NULL, 2800f4259b30SLisandro Dalcin NULL, 2801f4259b30SLisandro Dalcin NULL, 2802f4259b30SLisandro Dalcin NULL, 2803f4259b30SLisandro Dalcin /*89*/ NULL, 2804f4259b30SLisandro Dalcin NULL, 280526be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2806f4259b30SLisandro Dalcin NULL, 2807f4259b30SLisandro Dalcin NULL, 2808cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2809f4259b30SLisandro Dalcin NULL, 2810f4259b30SLisandro Dalcin NULL, 2811f4259b30SLisandro Dalcin NULL, 2812b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28134222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2814f4259b30SLisandro Dalcin NULL, 2815f4259b30SLisandro Dalcin NULL, 28162fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2817f4259b30SLisandro Dalcin NULL, 2818d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 281999cafbc1SBarry Smith MatRealPart_MPIAIJ, 282069db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2821f4259b30SLisandro Dalcin NULL, 2822f4259b30SLisandro Dalcin NULL, 2823f4259b30SLisandro Dalcin /*109*/ NULL, 2824f4259b30SLisandro Dalcin NULL, 28255494a064SHong Zhang MatGetRowMin_MPIAIJ, 2826f4259b30SLisandro Dalcin NULL, 28273b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2828d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2829f4259b30SLisandro Dalcin NULL, 2830c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2831f4259b30SLisandro Dalcin NULL, 2832f4259b30SLisandro Dalcin NULL, 2833b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2834f4259b30SLisandro Dalcin NULL, 2835f4259b30SLisandro Dalcin NULL, 2836f4259b30SLisandro Dalcin NULL, 2837b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2838f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2839a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2840bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2841a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28427dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2843f4259b30SLisandro Dalcin /*129*/ NULL, 2844f4259b30SLisandro Dalcin NULL, 2845f4259b30SLisandro Dalcin NULL, 2846187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2847f4259b30SLisandro Dalcin NULL, 2848f4259b30SLisandro Dalcin /*134*/ NULL, 2849f4259b30SLisandro Dalcin NULL, 2850f4259b30SLisandro Dalcin NULL, 2851f4259b30SLisandro Dalcin NULL, 2852f4259b30SLisandro Dalcin NULL, 285346533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2854f4259b30SLisandro Dalcin NULL, 2855f4259b30SLisandro Dalcin NULL, 28569c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2857a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28584222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2859f4259b30SLisandro Dalcin /*145*/ NULL, 2860f4259b30SLisandro Dalcin NULL, 286172833a62Smarkadams4 NULL, 286272833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28632d776b49SBarry Smith NULL, 2864dec0b466SHong Zhang /*150*/ NULL, 2865eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 2866eede4a3fSMark Adams MatGetRowSumAbs_MPIAIJ}; 286736ce4990SBarry Smith 2868ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2869d71ae5a4SJacob Faibussowitsch { 28702e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28712e8a6d31SBarry Smith 28722e8a6d31SBarry Smith PetscFunctionBegin; 28739566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28749566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28762e8a6d31SBarry Smith } 28772e8a6d31SBarry Smith 2878ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2879d71ae5a4SJacob Faibussowitsch { 28802e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28812e8a6d31SBarry Smith 28822e8a6d31SBarry Smith PetscFunctionBegin; 28839566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28849566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28862e8a6d31SBarry Smith } 28878a729477SBarry Smith 2888d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2889d71ae5a4SJacob Faibussowitsch { 2890ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 28915d2a9ed1SStefano Zampini PetscMPIInt size; 2892a23d5eceSKris Buschelman 2893a23d5eceSKris Buschelman PetscFunctionBegin; 2894ad79cf63SBarry Smith if (B->hash_active) { 2895aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2896ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2897ad79cf63SBarry Smith } 28989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 28999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2900899cda47SBarry Smith 2901cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2902eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2903cb7b82ddSBarry Smith #else 29049566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2905cb7b82ddSBarry Smith #endif 29069566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29079566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29089566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2909cb7b82ddSBarry Smith 29109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2911c508b908SBarry Smith 2912c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29139566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29149566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29169566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29179566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2918c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2919cb7b82ddSBarry Smith 2920c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2921ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29229566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29249566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29259566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2926c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2927899cda47SBarry Smith 29289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2930526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2931cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 293215001458SStefano Zampini B->assembled = PETSC_FALSE; 29333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2934a23d5eceSKris Buschelman } 2935a23d5eceSKris Buschelman 2936ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2937d71ae5a4SJacob Faibussowitsch { 2938ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2939846b4da1SFande Kong 2940846b4da1SFande Kong PetscFunctionBegin; 2941846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29439566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2944846b4da1SFande Kong 2945846b4da1SFande Kong #if defined(PETSC_USE_CTABLE) 2946eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2947846b4da1SFande Kong #else 29489566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2949846b4da1SFande Kong #endif 29509566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29529566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2953846b4da1SFande Kong 29549566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->A)); 29559566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->B)); 2956846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2957846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2958846b4da1SFande Kong B->assembled = PETSC_FALSE; 29593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2960846b4da1SFande Kong } 2961846b4da1SFande Kong 2962d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2963d71ae5a4SJacob Faibussowitsch { 2964d6dfbf8fSBarry Smith Mat mat; 2965416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2966d6dfbf8fSBarry Smith 29673a40ed3dSBarry Smith PetscFunctionBegin; 2968f4259b30SLisandro Dalcin *newmat = NULL; 29699566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29709566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29719566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29729566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2973273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2974e1b6402fSHong Zhang 2975d5f3da31SBarry Smith mat->factortype = matin->factortype; 2976501880eeSStefano Zampini mat->assembled = matin->assembled; 2977e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2978d6dfbf8fSBarry Smith 297917699dbbSLois Curfman McInnes a->size = oldmat->size; 298017699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2981e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2982e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2983501880eeSStefano Zampini a->rowindices = NULL; 2984501880eeSStefano Zampini a->rowvalues = NULL; 2985bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2986d6dfbf8fSBarry Smith 29879566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29889566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2989420957c1SBarry Smith if (matin->hash_active) { 2990420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2991420957c1SBarry Smith } else { 2992420957c1SBarry Smith mat->preallocated = matin->preallocated; 29932ee70a88SLois Curfman McInnes if (oldmat->colmap) { 2994aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2995eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2996b1fc9764SSatish Balay #else 29979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 29989566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 2999b1fc9764SSatish Balay #endif 3000501880eeSStefano Zampini } else a->colmap = NULL; 30013f41c07dSBarry Smith if (oldmat->garray) { 3002b1d57f15SBarry Smith PetscInt len; 3003d0f46423SBarry Smith len = oldmat->B->cmap->n; 30049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30059566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3006501880eeSStefano Zampini } else a->garray = NULL; 3007d6dfbf8fSBarry Smith 30080de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30090de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30100de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3011aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3012aa624791SPierre Jolivet if (oldmat->Mvctx) PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 30139566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30149566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3015420957c1SBarry Smith } 30169566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30178a729477SBarry Smith *newmat = mat; 30183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30198a729477SBarry Smith } 3020416022c9SBarry Smith 3021d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3022d71ae5a4SJacob Faibussowitsch { 302352f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 302452f91c60SVaclav Hapla 302552f91c60SVaclav Hapla PetscFunctionBegin; 302652f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 302752f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3028c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30299566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30319566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 303252f91c60SVaclav Hapla if (isbinary) { 30339566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 303452f91c60SVaclav Hapla } else if (ishdf5) { 303552f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30369566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 303752f91c60SVaclav Hapla #else 303852f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 303952f91c60SVaclav Hapla #endif 304052f91c60SVaclav Hapla } else { 304198921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 304252f91c60SVaclav Hapla } 30433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 304452f91c60SVaclav Hapla } 304552f91c60SVaclav Hapla 3046d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3047d71ae5a4SJacob Faibussowitsch { 30483ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30493ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30503ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30518fb81238SShri Abhyankar 30528fb81238SShri Abhyankar PetscFunctionBegin; 30539566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30548fb81238SShri Abhyankar 30553ea6fe3dSLisandro Dalcin /* read in matrix header */ 30569566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 305708401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30589371c9d4SSatish Balay M = header[1]; 30599371c9d4SSatish Balay N = header[2]; 30609371c9d4SSatish Balay nz = header[3]; 306108401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 306208401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 306308401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 306408ea439dSMark F. Adams 30653ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30669566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30673ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30683ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30693ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30709566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30719566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30728fb81238SShri Abhyankar 30733ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30749566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3075aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30768fb81238SShri Abhyankar 30773ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30789566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30809566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30819371c9d4SSatish Balay rowidxs[0] = 0; 30829371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 308338b83642SBarry Smith if (nz != PETSC_MAX_INT) { 30841c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 308508401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 308638b83642SBarry Smith } 308738b83642SBarry Smith 30883ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 30899566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 30909566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 30919566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 30923ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 30939566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 30949566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 30959566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 30963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30978fb81238SShri Abhyankar } 30988fb81238SShri Abhyankar 30993782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3100ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3101d71ae5a4SJacob Faibussowitsch { 31024aa3045dSJed Brown IS iscol_local; 3103c5e4d11fSDmitry Karpeev PetscBool isstride; 3104c5e4d11fSDmitry Karpeev PetscMPIInt lisstride = 0, gisstride; 31053782ecc7SHong Zhang 31063782ecc7SHong Zhang PetscFunctionBegin; 31073782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31093782ecc7SHong Zhang 3110c5e4d11fSDmitry Karpeev if (isstride) { 3111c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31129566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31139566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31149566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 3115c5e4d11fSDmitry Karpeev if (mstart == start && mlen - mstart == len) lisstride = 1; 3116c5e4d11fSDmitry Karpeev } 31173782ecc7SHong Zhang 31181c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3119c5e4d11fSDmitry Karpeev if (gisstride) { 3120c5e4d11fSDmitry Karpeev PetscInt N; 31219566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31229566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31239566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31249566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3125c5e4d11fSDmitry Karpeev } else { 3126c5bfad50SMark F. Adams PetscInt cbs; 31279566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31289566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31299566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3130b79d0421SJed Brown } 31313782ecc7SHong Zhang 31323782ecc7SHong Zhang *isseq = iscol_local; 31333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3134c5e4d11fSDmitry Karpeev } 31358d2139bdSHong Zhang 3136ddfdf956SHong Zhang /* 31379c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31389c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3139ddfdf956SHong Zhang 3140ddfdf956SHong Zhang Input Parameters: 314127430b45SBarry Smith + mat - matrix 314227430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31439c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 314427430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3145ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 314627430b45SBarry Smith 314727430b45SBarry Smith Output Parameters: 314827430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 314927430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 315027430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 315127430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3152ddfdf956SHong Zhang */ 3153ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[]) 3154d71ae5a4SJacob Faibussowitsch { 3155040216a4SHong Zhang Vec x, cmap; 3156040216a4SHong Zhang const PetscInt *is_idx; 3157040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31589c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3159040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3160040216a4SHong Zhang Mat B = a->B; 3161040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3162a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31638b3fa1f7SHong Zhang MPI_Comm comm; 31643a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31653782ecc7SHong Zhang 31663782ecc7SHong Zhang PetscFunctionBegin; 31679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31689566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31698b3fa1f7SHong Zhang 3170ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31719566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31729566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31739566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31749566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31750a351717SHong Zhang 31769c988bcaSHong Zhang /* Get start indices */ 31779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3178ddfdf956SHong Zhang isstart -= ncols; 31799566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3180040216a4SHong Zhang 31819566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31829566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31839566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3185ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31868b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3187ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 31889c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 31898b3fa1f7SHong Zhang } 31909566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 31919566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 31929566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 31938b3fa1f7SHong Zhang 31949c988bcaSHong Zhang /* Get iscol_d */ 31959566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 31969566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 31979566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3198feb78a15SHong Zhang 31999c988bcaSHong Zhang /* Get isrow_d */ 32009566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3201feb78a15SHong Zhang rstart = mat->rmap->rstart; 32029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32039566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32049c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32059566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3206feb78a15SHong Zhang 32079566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32089566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32099566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3210feb78a15SHong Zhang 32119c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32129566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32139566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3214ddfdf956SHong Zhang 32159566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 321607250d77SHong Zhang 32179566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32189566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 321964efcef9SHong Zhang 32209c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3221ddfdf956SHong Zhang /* off-process column indices */ 32229c988bcaSHong Zhang count = 0; 32239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3225feb78a15SHong Zhang 32269566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32279566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32288b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3229f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32309c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32311c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32321c645242SHong Zhang count++; 32338b3fa1f7SHong Zhang } 32348b3fa1f7SHong Zhang } 32359566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 323707250d77SHong Zhang 32389566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3239b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3240b6d9b4e0SHong Zhang 32419566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32429c988bcaSHong Zhang *garray = cmap1; 32439c988bcaSHong Zhang 32449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32469566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3248040216a4SHong Zhang } 3249040216a4SHong Zhang 3250b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3251d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3252d71ae5a4SJacob Faibussowitsch { 3253b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32541fd43edeSHong Zhang Mat M = NULL; 32553b00a383SHong Zhang MPI_Comm comm; 3256b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32573b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3258b20e2604SHong Zhang PetscInt n; 32593b00a383SHong Zhang 32603b00a383SHong Zhang PetscFunctionBegin; 32619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32623b00a383SHong Zhang 32633b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3264b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32659566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 326628b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32673b00a383SHong Zhang 32689566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 326928b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32703b00a383SHong Zhang 32719566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 327228b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32733b00a383SHong Zhang 3274b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3275b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32769566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32779566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 327848a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32799566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32809566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32813b00a383SHong Zhang 32823b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 32839c988bcaSHong Zhang const PetscInt *garray; 3284b20e2604SHong Zhang PetscInt BsubN; 32853b00a383SHong Zhang 3286b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32879566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 32883b00a383SHong Zhang 3289b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 32909566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 32919566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 32923b00a383SHong Zhang 32939c988bcaSHong Zhang /* Create submatrix M */ 32949566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M)); 32953b00a383SHong Zhang 3296b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3297b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 32987cfce09cSHong Zhang 32999566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3300b20e2604SHong Zhang n = asub->B->cmap->N; 3301b20e2604SHong Zhang if (BsubN > n) { 3302c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33037cfce09cSHong Zhang const PetscInt *idx; 33049c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33059566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33067cfce09cSHong Zhang 33079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33087cfce09cSHong Zhang j = 0; 33099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3310b20e2604SHong Zhang for (i = 0; i < n; i++) { 33117cfce09cSHong Zhang if (j >= BsubN) break; 33129c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33137cfce09cSHong Zhang 33149c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33157cfce09cSHong Zhang idx_new[i] = idx[j++]; 331698921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33177cfce09cSHong Zhang } 33189566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33197cfce09cSHong Zhang 33209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33219566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33227cfce09cSHong Zhang 3323b20e2604SHong Zhang } else if (BsubN < n) { 332498921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3325b20e2604SHong Zhang } 33267cfce09cSHong Zhang 33279566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3328b20e2604SHong Zhang *submat = M; 33293b00a383SHong Zhang 3330e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33319566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33333b00a383SHong Zhang 33349566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33363b00a383SHong Zhang 33379566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33393b00a383SHong Zhang } 33403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33413b00a383SHong Zhang } 33423b00a383SHong Zhang 3343d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3344d71ae5a4SJacob Faibussowitsch { 33451358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33463782ecc7SHong Zhang PetscInt csize; 334718e627e3SHong Zhang PetscInt n, i, j, start, end; 33484a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33493782ecc7SHong Zhang MPI_Comm comm; 33503782ecc7SHong Zhang 33513782ecc7SHong Zhang PetscFunctionBegin; 3352bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3353a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33548f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33559566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3356d5761cdaSHong Zhang if (isrow_d) { 3357d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3358d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3359d5761cdaSHong Zhang } else { 33609566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3361d5761cdaSHong Zhang if (iscol_local) { 3362d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3363d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3364d5761cdaSHong Zhang } 3365d5761cdaSHong Zhang } 33668f69fa7bSHong Zhang } else { 3367e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 336818e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33699566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33703782ecc7SHong Zhang if (!n) { 337118e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33723782ecc7SHong Zhang } else { 33739566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33749566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3375ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33768f69fa7bSHong Zhang } 33773782ecc7SHong Zhang 3378e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 337918e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33809566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 338118e627e3SHong Zhang if (!n) { 338218e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 338318e627e3SHong Zhang } else { 33849566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33859566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 338618e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 338718e627e3SHong Zhang } 338818e627e3SHong Zhang 33899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 33901c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 339118e627e3SHong Zhang sameRowDist = tsameDist[0]; 339218e627e3SHong Zhang } 339318e627e3SHong Zhang 339418e627e3SHong Zhang if (sameRowDist) { 3395b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 33963b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 33979566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 33983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3399b20e2604SHong Zhang } else { /* sameRowDist */ 34003b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34011358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34021358a193SHong Zhang PetscBool sorted; 34039566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34059566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 340608401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34071358a193SHong Zhang 34089566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34091358a193SHong Zhang if (sorted) { 34101358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34119566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34133782ecc7SHong Zhang } 34141358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 341548c0d076SHong Zhang IS iscol_sub; 34169566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 341748c0d076SHong Zhang if (iscol_sub) { 34189566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 342048c0d076SHong Zhang } 34211358a193SHong Zhang } 34221358a193SHong Zhang } 34231358a193SHong Zhang } 34243782ecc7SHong Zhang 3425bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34263782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34279566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 342828b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34293782ecc7SHong Zhang } else { 343048a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34311358a193SHong Zhang } 34323782ecc7SHong Zhang 34339566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34349566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34358f69fa7bSHong Zhang 3436b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34379566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3439b79d0421SJed Brown } 34403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34414aa3045dSJed Brown } 34424aa3045dSJed Brown 3443feb78a15SHong Zhang /*@C 344411a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3445feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3446feb78a15SHong Zhang 3447d083f849SBarry Smith Collective 3448feb78a15SHong Zhang 3449feb78a15SHong Zhang Input Parameters: 3450feb78a15SHong Zhang + comm - MPI communicator 3451feb78a15SHong Zhang . A - "diagonal" portion of matrix 3452b20e2604SHong Zhang . B - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine 34532ef1f0ffSBarry Smith - garray - global index of `B` columns 3454feb78a15SHong Zhang 3455feb78a15SHong Zhang Output Parameter: 34562ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 345727430b45SBarry Smith 3458feb78a15SHong Zhang Level: advanced 3459feb78a15SHong Zhang 3460feb78a15SHong Zhang Notes: 346111a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 346211a5261eSBarry Smith 34632ef1f0ffSBarry Smith `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore. 3464feb78a15SHong Zhang 34651cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3466feb78a15SHong Zhang @*/ 3467d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat) 3468d71ae5a4SJacob Faibussowitsch { 3469feb78a15SHong Zhang Mat_MPIAIJ *maij; 3470e489de8fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data, *bnew; 3471a5348796SHong Zhang PetscInt *oi = b->i, *oj = b->j, i, nz, col; 3472ce496241SStefano Zampini const PetscScalar *oa; 3473e489de8fSHong Zhang Mat Bnew; 3474feb78a15SHong Zhang PetscInt m, n, N; 34754ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3476feb78a15SHong Zhang 3477feb78a15SHong Zhang PetscFunctionBegin; 34789566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 34799566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 348008401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 348137a5e0faSPierre Jolivet PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3482b6d9b4e0SHong Zhang /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */ 348308401ef6SPierre Jolivet /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */ 3484feb78a15SHong Zhang 3485e489de8fSHong Zhang /* Get global columns of mat */ 34861c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm)); 3487feb78a15SHong Zhang 34889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N)); 34894ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 34904ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 34914ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 34924ab4d6f4SRichard Tran Mills 349337a5e0faSPierre Jolivet if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3494feb78a15SHong Zhang maij = (Mat_MPIAIJ *)(*mat)->data; 3495feb78a15SHong Zhang 3496feb78a15SHong Zhang (*mat)->preallocated = PETSC_TRUE; 3497feb78a15SHong Zhang 34989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 34999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3500feb78a15SHong Zhang 3501e489de8fSHong Zhang /* Set A as diagonal portion of *mat */ 3502feb78a15SHong Zhang maij->A = A; 3503feb78a15SHong Zhang 3504a5348796SHong Zhang nz = oi[m]; 3505a5348796SHong Zhang for (i = 0; i < nz; i++) { 3506a5348796SHong Zhang col = oj[i]; 3507a5348796SHong Zhang oj[i] = garray[col]; 3508feb78a15SHong Zhang } 3509feb78a15SHong Zhang 3510e489de8fSHong Zhang /* Set Bnew as off-diagonal portion of *mat */ 35119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &oa)); 35129566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew)); 35139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &oa)); 3514e489de8fSHong Zhang bnew = (Mat_SeqAIJ *)Bnew->data; 3515e489de8fSHong Zhang bnew->maxnz = b->maxnz; /* allocated nonzeros of B */ 3516e489de8fSHong Zhang maij->B = Bnew; 3517d5761cdaSHong Zhang 351808401ef6SPierre Jolivet PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N); 3519d5761cdaSHong Zhang 3520e489de8fSHong Zhang b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */ 3521d5761cdaSHong Zhang b->free_a = PETSC_FALSE; 3522d5761cdaSHong Zhang b->free_ij = PETSC_FALSE; 35239566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 3524d5761cdaSHong Zhang 3525e489de8fSHong Zhang bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */ 3526e489de8fSHong Zhang bnew->free_a = PETSC_TRUE; 3527e489de8fSHong Zhang bnew->free_ij = PETSC_TRUE; 3528feb78a15SHong Zhang 3529a5348796SHong Zhang /* condense columns of maij->B */ 35309566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 35319566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 35329566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 35339566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 35349566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3536feb78a15SHong Zhang } 3537feb78a15SHong Zhang 3538ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35394aa3045dSJed Brown 3540d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3541d71ae5a4SJacob Faibussowitsch { 354298b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 354385f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 354498b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35451fd43edeSHong Zhang Mat M, Msub, B = a->B; 354698b658c4SHong Zhang MatScalar *aa; 354700e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3548a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 354998b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 355098b658c4SHong Zhang IS iscol_sub, iscmap; 355198b658c4SHong Zhang const PetscInt *is_idx, *cmap; 355218e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3553a31a438cSHong Zhang MPI_Comm comm; 35547e2c5f70SBarry Smith 3555a0ff6018SBarry Smith PetscFunctionBegin; 35569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3557d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35589566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 355928b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35609566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3561d5761cdaSHong Zhang 35629566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 356328b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3564d5761cdaSHong Zhang 35659566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 356628b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3567d5761cdaSHong Zhang 35689566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3569d5761cdaSHong Zhang 3570d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35713b00a383SHong Zhang PetscBool flg; 35723b00a383SHong Zhang 35739566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35749566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3575bcae8d28SHong Zhang 35763b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3577366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35789566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3579366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 35801c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3581366a327dSHong Zhang if (allcolumns) { 3582366a327dSHong Zhang iscol_sub = iscol_local; 35839566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35849566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3585366a327dSHong Zhang 35863b00a383SHong Zhang } else { 35871358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3588244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 35909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 35919566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 35928d2139bdSHong Zhang count = 0; 3593a31a438cSHong Zhang k = 0; 3594a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3595a31a438cSHong Zhang j = is_idx[i]; 3596a31a438cSHong Zhang if (j >= cstart && j < cend) { 3597a31a438cSHong Zhang /* diagonal part of mat */ 35988d2139bdSHong Zhang idx[count] = j; 3599366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36004a3daf6eSHong Zhang } else if (Bn) { 3601a31a438cSHong Zhang /* off-diagonal part of mat */ 3602a31a438cSHong Zhang if (j == garray[k]) { 36038d2139bdSHong Zhang idx[count] = j; 3604a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3605a31a438cSHong Zhang } else if (j > garray[k]) { 3606a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3607a31a438cSHong Zhang if (j == garray[k]) { 3608a31a438cSHong Zhang idx[count] = j; 3609a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36108d2139bdSHong Zhang } 36118d2139bdSHong Zhang } 36128d2139bdSHong Zhang } 36138d2139bdSHong Zhang } 36149566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36158d2139bdSHong Zhang 36169566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36179566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36189566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3619b6d9b4e0SHong Zhang 36209566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3621a31a438cSHong Zhang } 36228b3fa1f7SHong Zhang 36233b00a383SHong Zhang /* (3) Create sequential Msub */ 36249566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3625d5761cdaSHong Zhang } 36268d2139bdSHong Zhang 36279566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 362898b658c4SHong Zhang aij = (Mat_SeqAIJ *)(Msub)->data; 362998b658c4SHong Zhang ii = aij->i; 36309566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3631a0ff6018SBarry Smith 3632a0ff6018SBarry Smith /* 3633a0ff6018SBarry Smith m - number of local rows 3634a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3635a0ff6018SBarry Smith rstart - first row in new global matrix generated 3636a0ff6018SBarry Smith */ 36379566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 363898b658c4SHong Zhang 36393b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36403b00a383SHong Zhang /* (4) Create parallel newmat */ 364198b658c4SHong Zhang PetscMPIInt rank, size; 3642bcae8d28SHong Zhang PetscInt csize; 364398b658c4SHong Zhang 36449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 364600e6dbe6SBarry Smith 3647a0ff6018SBarry Smith /* 364800e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 364900e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3650a0ff6018SBarry Smith */ 365100e6dbe6SBarry Smith 365200e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36539566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36546a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36559566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3656a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3657e2c4fddaSBarry Smith nlocal = m; 36586a6a5d1dSBarry Smith } else { 3659a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3660ab50ec6bSBarry Smith } 3661ab50ec6bSBarry Smith } else { 36626a6a5d1dSBarry Smith nlocal = csize; 36636a6a5d1dSBarry Smith } 36649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 366500e6dbe6SBarry Smith rstart = rend - nlocal; 3666aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 366700e6dbe6SBarry Smith 366800e6dbe6SBarry Smith /* next, compute all the lengths */ 366998b658c4SHong Zhang jj = aij->j; 36709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 367100e6dbe6SBarry Smith olens = dlens + m; 367200e6dbe6SBarry Smith for (i = 0; i < m; i++) { 367300e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 367400e6dbe6SBarry Smith olen = 0; 367500e6dbe6SBarry Smith dlen = 0; 367600e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 367715b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 367800e6dbe6SBarry Smith else dlen++; 367900e6dbe6SBarry Smith jj++; 368000e6dbe6SBarry Smith } 368100e6dbe6SBarry Smith olens[i] = olen; 368200e6dbe6SBarry Smith dlens[i] = dlen; 368300e6dbe6SBarry Smith } 3684b6d9b4e0SHong Zhang 36859566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36869566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 368798b658c4SHong Zhang 36889566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36899566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 36909566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 36919566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 36929566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 36939566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3694d5761cdaSHong Zhang 3695d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3696a0ff6018SBarry Smith M = *newmat; 36979566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 369808401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 36999566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3700c48de900SBarry Smith /* 3701c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3702c48de900SBarry Smith rather than the slower MatSetValues(). 3703c48de900SBarry Smith */ 3704c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3705c48de900SBarry Smith M->assembled = PETSC_FALSE; 3706a0ff6018SBarry Smith } 3707548ecf4dSHong Zhang 37083b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37109566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 371198b658c4SHong Zhang 371298b658c4SHong Zhang jj = aij->j; 37139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3714a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3715a0ff6018SBarry Smith row = rstart + i; 371600e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 371715b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37189566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37199371c9d4SSatish Balay jj += nz; 37209371c9d4SSatish Balay aa += nz; 3721a0ff6018SBarry Smith } 37229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37239566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3724a0ff6018SBarry Smith 37259566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37269566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3727fee21e36SBarry Smith 37289566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 372998b658c4SHong Zhang 373098b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3731fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37323b00a383SHong Zhang *newmat = M; 3733f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 373598b658c4SHong Zhang 3736f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 373898b658c4SHong Zhang 3739f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3741bcae8d28SHong Zhang 3742bcae8d28SHong Zhang if (iscol_local) { 3743f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37449566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3745bcae8d28SHong Zhang } 374698b658c4SHong Zhang } 37473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3748a0ff6018SBarry Smith } 3749273d9f13SBarry Smith 3750df40acb1SHong Zhang /* 3751df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3752df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3753df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3754df40acb1SHong Zhang 375511a5261eSBarry Smith This requires a sequential iscol with all indices. 3756df40acb1SHong Zhang */ 3757d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3758d71ae5a4SJacob Faibussowitsch { 3759df40acb1SHong Zhang PetscMPIInt rank, size; 3760df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3761df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3762df40acb1SHong Zhang Mat M, Mreuse; 376398b658c4SHong Zhang MatScalar *aa, *vwork; 3764df40acb1SHong Zhang MPI_Comm comm; 3765df40acb1SHong Zhang Mat_SeqAIJ *aij; 37660b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3767df40acb1SHong Zhang 3768df40acb1SHong Zhang PetscFunctionBegin; 37699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3772df40acb1SHong Zhang 37730b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37749566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37759566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37760b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 37771c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37780b27a90eSHong Zhang 3779df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37809566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 378128b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37829566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3783df40acb1SHong Zhang } else { 37849566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3785df40acb1SHong Zhang } 3786df40acb1SHong Zhang 3787df40acb1SHong Zhang /* 3788df40acb1SHong Zhang m - number of local rows 3789df40acb1SHong Zhang n - number of columns (same on all processors) 3790df40acb1SHong Zhang rstart - first row in new global matrix generated 3791df40acb1SHong Zhang */ 37929566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 37939566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3794df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 3795df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3796df40acb1SHong Zhang ii = aij->i; 3797df40acb1SHong Zhang jj = aij->j; 3798df40acb1SHong Zhang 3799df40acb1SHong Zhang /* 3800df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3801df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3802df40acb1SHong Zhang */ 3803df40acb1SHong Zhang 3804df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3805df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38069566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3807df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3808df40acb1SHong Zhang nlocal = m; 3809df40acb1SHong Zhang } else { 3810df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3811df40acb1SHong Zhang } 3812df40acb1SHong Zhang } else { 3813df40acb1SHong Zhang nlocal = csize; 3814df40acb1SHong Zhang } 38159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3816df40acb1SHong Zhang rstart = rend - nlocal; 3817aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3818df40acb1SHong Zhang 3819df40acb1SHong Zhang /* next, compute all the lengths */ 38209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3821df40acb1SHong Zhang olens = dlens + m; 3822df40acb1SHong Zhang for (i = 0; i < m; i++) { 3823df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3824df40acb1SHong Zhang olen = 0; 3825df40acb1SHong Zhang dlen = 0; 3826df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3827df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3828df40acb1SHong Zhang else dlen++; 3829df40acb1SHong Zhang jj++; 3830df40acb1SHong Zhang } 3831df40acb1SHong Zhang olens[i] = olen; 3832df40acb1SHong Zhang dlens[i] = dlen; 3833df40acb1SHong Zhang } 38349566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38369566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38379566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38389566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38399566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3840df40acb1SHong Zhang } else { 3841df40acb1SHong Zhang PetscInt ml, nl; 3842df40acb1SHong Zhang 3843df40acb1SHong Zhang M = *newmat; 38449566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 384508401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3847df40acb1SHong Zhang /* 3848df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3849df40acb1SHong Zhang rather than the slower MatSetValues(). 3850df40acb1SHong Zhang */ 3851df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3852df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3853df40acb1SHong Zhang } 38549566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 3855df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3856df40acb1SHong Zhang ii = aij->i; 3857df40acb1SHong Zhang jj = aij->j; 38582e5835c6SStefano Zampini 38592e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3861df40acb1SHong Zhang for (i = 0; i < m; i++) { 3862df40acb1SHong Zhang row = rstart + i; 3863df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38649371c9d4SSatish Balay cwork = jj; 38658e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38669371c9d4SSatish Balay vwork = aa; 38678e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38689566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3869df40acb1SHong Zhang } 38709566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3871df40acb1SHong Zhang 38729566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38739566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3874df40acb1SHong Zhang *newmat = M; 3875df40acb1SHong Zhang 3876df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3877df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38789566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38799566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3880df40acb1SHong Zhang } 38813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3882df40acb1SHong Zhang } 3883df40acb1SHong Zhang 3884ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3885d71ae5a4SJacob Faibussowitsch { 38866a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 3887899cda47SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii; 3888ccd8e176SBarry Smith const PetscInt *JJ; 3889eeb24464SBarry Smith PetscBool nooffprocentries; 38906a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3891ccd8e176SBarry Smith 3892ccd8e176SBarry Smith PetscFunctionBegin; 3893aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]); 3894899cda47SBarry Smith 38959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 38969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3897d0f46423SBarry Smith m = B->rmap->n; 3898d0f46423SBarry Smith cstart = B->cmap->rstart; 3899d0f46423SBarry Smith cend = B->cmap->rend; 3900d0f46423SBarry Smith rstart = B->rmap->rstart; 3901899cda47SBarry Smith 39029566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3903ccd8e176SBarry Smith 390476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39058f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3906ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39078e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 390808401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 390908401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 391008401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3911ecc77c7aSBarry Smith } 391276bd3646SJed Brown } 3913ecc77c7aSBarry Smith 39148f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3915b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39168e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 3917ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3918ccd8e176SBarry Smith d = 0; 39190daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39200daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3921ccd8e176SBarry Smith } 3922ccd8e176SBarry Smith d_nnz[i] = d; 3923ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3924ccd8e176SBarry Smith } 39259566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39269566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3927ccd8e176SBarry Smith 39288f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3929ccd8e176SBarry Smith ii = i + rstart; 39308e3a54c0SPierre Jolivet PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES)); 3931ccd8e176SBarry Smith } 3932eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3933eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39349566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39359566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3936eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3937ccd8e176SBarry Smith 39386a3d2595SBarry Smith /* count number of entries below block diagonal */ 39396a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39406a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39416a3d2595SBarry Smith Aij->ld = ld; 39426a3d2595SBarry Smith for (i = 0; i < m; i++) { 39436a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39446a3d2595SBarry Smith j = 0; 3945ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39466a3d2595SBarry Smith ld[i] = j; 3947720a2405SPierre Jolivet if (J) J += nnz; 39486a3d2595SBarry Smith } 39496a3d2595SBarry Smith 39509566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3952ccd8e176SBarry Smith } 3953ccd8e176SBarry Smith 39541eea217eSSatish Balay /*@ 395511a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3956ccd8e176SBarry Smith (the default parallel PETSc format). 3957ccd8e176SBarry Smith 3958d083f849SBarry Smith Collective 3959ccd8e176SBarry Smith 3960ccd8e176SBarry Smith Input Parameters: 3961a1661176SMatthew Knepley + B - the matrix 3962d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3963d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3964ccd8e176SBarry Smith - v - optional values in the matrix 3965ccd8e176SBarry Smith 3966ccd8e176SBarry Smith Level: developer 3967ccd8e176SBarry Smith 396812251496SSatish Balay Notes: 39692ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39702ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 397111a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 397212251496SSatish Balay 39732ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 397412251496SSatish Balay 3975a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3976a4bd8bc0SBarry Smith 3977a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3978a4bd8bc0SBarry Smith 3979a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3980a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3981a4bd8bc0SBarry Smith 398212251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 398312251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3984c5e4d11fSDmitry Karpeev as shown 398527430b45SBarry Smith .vb 398627430b45SBarry Smith 1 0 0 398727430b45SBarry Smith 2 0 3 P0 398827430b45SBarry Smith ------- 398927430b45SBarry Smith 4 5 6 P1 399027430b45SBarry Smith 399127430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 399227430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 399327430b45SBarry Smith j = {0,0,2} [size = 3] 399427430b45SBarry Smith v = {1,2,3} [size = 3] 399527430b45SBarry Smith 399627430b45SBarry Smith Process1 [P1] rows_owned=[2] 399727430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 399827430b45SBarry Smith j = {0,1,2} [size = 3] 399927430b45SBarry Smith v = {4,5,6} [size = 3] 400027430b45SBarry Smith .ve 400112251496SSatish Balay 4002fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4003a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4004ccd8e176SBarry Smith @*/ 4005d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4006d71ae5a4SJacob Faibussowitsch { 4007ccd8e176SBarry Smith PetscFunctionBegin; 4008cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4010ccd8e176SBarry Smith } 4011ccd8e176SBarry Smith 4012273d9f13SBarry Smith /*@C 401311a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4014273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4015273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 401620f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4017273d9f13SBarry Smith 4018d083f849SBarry Smith Collective 4019273d9f13SBarry Smith 4020273d9f13SBarry Smith Input Parameters: 40211c4f3114SJed Brown + B - the matrix 4022273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4023273d9f13SBarry Smith (same value is used for all local rows) 4024273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4025273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40262ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4027273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40283287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40293287b5eaSJed Brown the diagonal entry even if it is zero. 4030273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4031273d9f13SBarry Smith submatrix (same value is used for all local rows). 4032273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4033273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40342ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4035273d9f13SBarry Smith structure. The size of this array is equal to the number 4036273d9f13SBarry Smith of local rows, i.e 'm'. 4037273d9f13SBarry Smith 40382920cce0SJacob Faibussowitsch Example Usage: 403927430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 404027430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 404127430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 404227430b45SBarry Smith as follows 404327430b45SBarry Smith 404427430b45SBarry Smith .vb 404527430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 404627430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 404727430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 404827430b45SBarry Smith ------------------------------------- 404927430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 405027430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 405127430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 405227430b45SBarry Smith ------------------------------------- 405327430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 405427430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 405527430b45SBarry Smith .ve 405627430b45SBarry Smith 405727430b45SBarry Smith This can be represented as a collection of submatrices as 405827430b45SBarry Smith .vb 405927430b45SBarry Smith A B C 406027430b45SBarry Smith D E F 406127430b45SBarry Smith G H I 406227430b45SBarry Smith .ve 406327430b45SBarry Smith 406427430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 406527430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 406627430b45SBarry Smith 406727430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 406827430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 406927430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 407027430b45SBarry Smith 407127430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 407227430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 407327430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 407427430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 407527430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 407627430b45SBarry Smith matrix, ans [DF] as another `MATSEQAIJ` matrix. 407727430b45SBarry Smith 407820f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 407920f4b53cSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 408027430b45SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 408120f4b53cSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 408227430b45SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 408320f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 408427430b45SBarry Smith .vb 408527430b45SBarry Smith proc0 dnz = 2, o_nz = 2 408627430b45SBarry Smith proc1 dnz = 3, o_nz = 2 408727430b45SBarry Smith proc2 dnz = 1, o_nz = 4 408827430b45SBarry Smith .ve 408920f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 409027430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 409127430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 409227430b45SBarry Smith 34 values. 409327430b45SBarry Smith 409420f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 409527430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 409620f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 409727430b45SBarry Smith .vb 409827430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 409927430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 410027430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 410127430b45SBarry Smith .ve 410227430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 410327430b45SBarry Smith hence pre-allocation is perfect. 410427430b45SBarry Smith 410527430b45SBarry Smith Level: intermediate 410627430b45SBarry Smith 410727430b45SBarry Smith Notes: 410849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 410949a6f317SBarry Smith 411027430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41110598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4112651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4113273d9f13SBarry Smith 4114273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4115273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4116273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4117273d9f13SBarry Smith 4118273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4119a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4120a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4121a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4122a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4123a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4124a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4125a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4126a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4127273d9f13SBarry Smith 41282ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4129273d9f13SBarry Smith 413027430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4131aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 413227430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4133aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4134aa95bbe8SBarry Smith 41351cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4136a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4137273d9f13SBarry Smith @*/ 4138d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4139d71ae5a4SJacob Faibussowitsch { 4140273d9f13SBarry Smith PetscFunctionBegin; 41416ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41426ba663aaSJed Brown PetscValidType(B, 1); 4143cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4145273d9f13SBarry Smith } 4146273d9f13SBarry Smith 414758d36128SBarry Smith /*@ 414811a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41498f8f2f0dSBarry Smith CSR format for the local rows. 41502fb0ec9aSBarry Smith 4151d083f849SBarry Smith Collective 41522fb0ec9aSBarry Smith 41532fb0ec9aSBarry Smith Input Parameters: 41542fb0ec9aSBarry Smith + comm - MPI communicator 415511a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41562fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4157d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4158d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4159d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4160d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41615693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41625693b835SJunchao Zhang . j - global column indices 4163f1f2ae84SBarry Smith - a - optional matrix values 41642fb0ec9aSBarry Smith 41652fb0ec9aSBarry Smith Output Parameter: 41662fb0ec9aSBarry Smith . mat - the matrix 416703bfb495SBarry Smith 41682fb0ec9aSBarry Smith Level: intermediate 41692fb0ec9aSBarry Smith 41702fb0ec9aSBarry Smith Notes: 41712ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4172d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4173d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41742fb0ec9aSBarry Smith 41752ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 417612251496SSatish Balay 41775693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4178a4bd8bc0SBarry Smith 41795693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4180a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4181a4bd8bc0SBarry Smith 418212251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4183d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4184c5e4d11fSDmitry Karpeev as shown 41852ef1f0ffSBarry Smith .vb 41862ef1f0ffSBarry Smith 1 0 0 41872ef1f0ffSBarry Smith 2 0 3 P0 41882ef1f0ffSBarry Smith ------- 41892ef1f0ffSBarry Smith 4 5 6 P1 41908f8f2f0dSBarry Smith 41912ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 41922ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 41932ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 41942ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 41952fb0ec9aSBarry Smith 41962ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 41972ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 41982ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 41992ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42002ef1f0ffSBarry Smith .ve 42012ef1f0ffSBarry Smith 4202d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42035693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42042fb0ec9aSBarry Smith @*/ 4205d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4206d71ae5a4SJacob Faibussowitsch { 42072fb0ec9aSBarry Smith PetscFunctionBegin; 420808401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 420908401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42109566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42119566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42129566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42139566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42149566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42162fb0ec9aSBarry Smith } 42172fb0ec9aSBarry Smith 42188f8f2f0dSBarry Smith /*@ 421911a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42202ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42212ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42226a3d2595SBarry Smith 42236a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42248f8f2f0dSBarry Smith 42258f8f2f0dSBarry Smith Collective 42268f8f2f0dSBarry Smith 42278f8f2f0dSBarry Smith Input Parameters: 42288f8f2f0dSBarry Smith + mat - the matrix 422911a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42308f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 423111a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42328f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 423311a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 423411a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42358f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42368f8f2f0dSBarry Smith . J - column indices 42378f8f2f0dSBarry Smith - v - matrix values 42388f8f2f0dSBarry Smith 42392ef1f0ffSBarry Smith Level: deprecated 42408f8f2f0dSBarry Smith 42411cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4242a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42438f8f2f0dSBarry Smith @*/ 4244d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4245d71ae5a4SJacob Faibussowitsch { 42466a3d2595SBarry Smith PetscInt nnz, i; 42478f8f2f0dSBarry Smith PetscBool nooffprocentries; 42488f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4249fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4250fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42518f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42526a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42536a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42548f8f2f0dSBarry Smith 42558f8f2f0dSBarry Smith PetscFunctionBegin; 4256aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 425708401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 425808401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 425908401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42608f8f2f0dSBarry Smith 42619566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42638f8f2f0dSBarry Smith 42648f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42654c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42664c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42674c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42684c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42694c17f1ccSBarry Smith } 42704c17f1ccSBarry Smith } 42718f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42728f8f2f0dSBarry Smith Iii = Ii[i]; 42738f8f2f0dSBarry Smith ldi = ld[i]; 42748f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42759566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42769566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42779566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42788f8f2f0dSBarry Smith ad += md; 42798f8f2f0dSBarry Smith ao += nnz - md; 42808f8f2f0dSBarry Smith } 42818f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42828f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42859566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42869566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42879566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42908f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 42913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42928f8f2f0dSBarry Smith } 42938f8f2f0dSBarry Smith 42946a3d2595SBarry Smith /*@ 429511a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 42966a3d2595SBarry Smith 42976a3d2595SBarry Smith Collective 42986a3d2595SBarry Smith 42996a3d2595SBarry Smith Input Parameters: 43006a3d2595SBarry Smith + mat - the matrix 43016a3d2595SBarry Smith - v - matrix values, stored by row 43026a3d2595SBarry Smith 43036a3d2595SBarry Smith Level: intermediate 43046a3d2595SBarry Smith 4305a4bd8bc0SBarry Smith Notes: 43066a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43076a3d2595SBarry Smith 4308a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4309a4bd8bc0SBarry Smith 43101cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4311a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43126a3d2595SBarry Smith @*/ 4313d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4314d71ae5a4SJacob Faibussowitsch { 43156a3d2595SBarry Smith PetscInt nnz, i, m; 43166a3d2595SBarry Smith PetscBool nooffprocentries; 43176a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43186a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43196a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43206a3d2595SBarry Smith PetscScalar *ad, *ao; 43216a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43226a3d2595SBarry Smith PetscInt ldi, Iii, md; 43236a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43246a3d2595SBarry Smith 43256a3d2595SBarry Smith PetscFunctionBegin; 43266a3d2595SBarry Smith m = mat->rmap->n; 43276a3d2595SBarry Smith 43286a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43296a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43306a3d2595SBarry Smith Iii = 0; 43316a3d2595SBarry Smith for (i = 0; i < m; i++) { 43326a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43336a3d2595SBarry Smith ldi = ld[i]; 43346a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43356a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43366a3d2595SBarry Smith ad += md; 4337810441c8SPierre Jolivet if (ao) { 4338810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4339810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43406a3d2595SBarry Smith ao += nnz - md; 4341810441c8SPierre Jolivet } 43426a3d2595SBarry Smith Iii += nnz; 43436a3d2595SBarry Smith } 43446a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43456a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43466a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43476a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43486a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43496a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43506a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43516a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43526a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43536a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43556a3d2595SBarry Smith } 43566a3d2595SBarry Smith 4357273d9f13SBarry Smith /*@C 435811a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4359273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4360273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43612ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4362273d9f13SBarry Smith 4363d083f849SBarry Smith Collective 4364273d9f13SBarry Smith 4365273d9f13SBarry Smith Input Parameters: 4366273d9f13SBarry Smith + comm - MPI communicator 436711a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4368273d9f13SBarry Smith This value should be the same as the local size used in creating the 4369273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4370273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 437145f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4372273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 437311a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 437411a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4375273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4376273d9f13SBarry Smith (same value is used for all local rows) 4377273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4378273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43792ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4380273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4381273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4382273d9f13SBarry Smith submatrix (same value is used for all local rows). 4383273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4384273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43852ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4386273d9f13SBarry Smith structure. The size of this array is equal to the number 4387273d9f13SBarry Smith of local rows, i.e 'm'. 4388273d9f13SBarry Smith 4389273d9f13SBarry Smith Output Parameter: 4390273d9f13SBarry Smith . A - the matrix 4391273d9f13SBarry Smith 439227430b45SBarry Smith Options Database Keys: 439327430b45SBarry Smith + -mat_no_inode - Do not use inodes 439427430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 439527430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4396727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4397727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 439827430b45SBarry Smith 43992ef1f0ffSBarry Smith Level: intermediate 44002ef1f0ffSBarry Smith 440127430b45SBarry Smith Notes: 440277433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4403f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 440411a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4405175b88e8SBarry Smith 440649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 440749a6f317SBarry Smith 44082ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44092ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4410273d9f13SBarry Smith storage requirements for this matrix. 4411273d9f13SBarry Smith 441211a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4413273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4414273d9f13SBarry Smith that argument. 4415273d9f13SBarry Smith 4416727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4417727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4418727bdf9bSBarry Smith 4419273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4420273d9f13SBarry Smith (possibly both). 4421273d9f13SBarry Smith 442233a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4423727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4424727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4425727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 442633a7c187SSatish Balay values corresponding to [m x N] submatrix. 4427273d9f13SBarry Smith 442833a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 442933a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4430df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 443133a7c187SSatish Balay 443233a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 443333a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 443433a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 443533a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 443633a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 443733a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 443833a7c187SSatish Balay illustrates this concept. 443933a7c187SSatish Balay 444033a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 444133a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 444233a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 444333a7c187SSatish Balay local matrix (a rectangular submatrix). 4444273d9f13SBarry Smith 44452ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4446273d9f13SBarry Smith 444797d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44482ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4449da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4450da57b5cdSKarl Rupp .vb 44512ef1f0ffSBarry Smith MatCreate(..., &A); 44522ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44532ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44542ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4455da57b5cdSKarl Rupp .ve 445697d05335SKris Buschelman 4457273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4458273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4459273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4460273d9f13SBarry Smith 44612920cce0SJacob Faibussowitsch Example Usage: 4462273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4463273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4464273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4465efc377ccSKarl Rupp as follows 4466273d9f13SBarry Smith 4467273d9f13SBarry Smith .vb 4468273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4469273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4470273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4471273d9f13SBarry Smith ------------------------------------- 4472273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4473273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4474273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4475273d9f13SBarry Smith ------------------------------------- 4476273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4477273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4478273d9f13SBarry Smith .ve 4479273d9f13SBarry Smith 4480da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4481273d9f13SBarry Smith 4482273d9f13SBarry Smith .vb 4483273d9f13SBarry Smith A B C 4484273d9f13SBarry Smith D E F 4485273d9f13SBarry Smith G H I 4486273d9f13SBarry Smith .ve 4487273d9f13SBarry Smith 4488273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4489273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4490273d9f13SBarry Smith 4491273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4492273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4493273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4494273d9f13SBarry Smith 4495273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4496273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4497273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4498273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 449927430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 4500273d9f13SBarry Smith matrix, ans [DF] as another SeqAIJ matrix. 4501273d9f13SBarry Smith 45022ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45032ef1f0ffSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 4504273d9f13SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 45052ef1f0ffSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 4506273d9f13SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45072ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4508273d9f13SBarry Smith .vb 450927430b45SBarry Smith proc0 dnz = 2, o_nz = 2 451027430b45SBarry Smith proc1 dnz = 3, o_nz = 2 451127430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4512273d9f13SBarry Smith .ve 45132ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4514273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4515273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4516273d9f13SBarry Smith 34 values. 4517273d9f13SBarry Smith 45182ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4519a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4520da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4521273d9f13SBarry Smith .vb 452227430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 452327430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 452427430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4525273d9f13SBarry Smith .ve 4526273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4527273d9f13SBarry Smith hence pre-allocation is perfect. 4528273d9f13SBarry Smith 45291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4530727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4531727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4532273d9f13SBarry Smith @*/ 4533d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4534d71ae5a4SJacob Faibussowitsch { 4535b1d57f15SBarry Smith PetscMPIInt size; 4536273d9f13SBarry Smith 4537273d9f13SBarry Smith PetscFunctionBegin; 45389566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45399566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4541273d9f13SBarry Smith if (size > 1) { 45429566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45439566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4544273d9f13SBarry Smith } else { 45459566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4547273d9f13SBarry Smith } 45483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4549273d9f13SBarry Smith } 4550195d93cdSBarry Smith 45510b98dbb4SBarry Smith /*MC 45520b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix 45530b98dbb4SBarry Smith 45540b98dbb4SBarry Smith Synopsis: 45550b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45560b98dbb4SBarry Smith 45570b98dbb4SBarry Smith Not Collective 45580b98dbb4SBarry Smith 45590b98dbb4SBarry Smith Input Parameter: 45600b98dbb4SBarry Smith . A - the `MATMPIAIJ` matrix 45610b98dbb4SBarry Smith 45620b98dbb4SBarry Smith Output Parameters: 45630b98dbb4SBarry Smith + Ad - the diagonal portion of the matrix 45644cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45652ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45660b98dbb4SBarry Smith - ierr - error code 45670b98dbb4SBarry Smith 45680b98dbb4SBarry Smith Level: advanced 45690b98dbb4SBarry Smith 45700b98dbb4SBarry Smith Note: 45710b98dbb4SBarry Smith Use `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45720b98dbb4SBarry Smith 45731cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()` 45740b98dbb4SBarry Smith M*/ 45750b98dbb4SBarry Smith 45760b98dbb4SBarry Smith /*MC 45770b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45780b98dbb4SBarry Smith 45790b98dbb4SBarry Smith Synopsis: 45800b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45810b98dbb4SBarry Smith 45820b98dbb4SBarry Smith Not Collective 45830b98dbb4SBarry Smith 45840b98dbb4SBarry Smith Input Parameters: 45850b98dbb4SBarry Smith + A - the `MATMPIAIJ` matrix 45860b98dbb4SBarry Smith . Ad - the diagonal portion of the matrix 45874cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45882ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45890b98dbb4SBarry Smith - ierr - error code 45900b98dbb4SBarry Smith 45910b98dbb4SBarry Smith Level: advanced 45920b98dbb4SBarry Smith 45931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()` 45940b98dbb4SBarry Smith M*/ 45950b98dbb4SBarry Smith 4596127ca0efSMatthew Knepley /*@C 45970ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4598127ca0efSMatthew Knepley 45992ef1f0ffSBarry Smith Not Collective 4600127ca0efSMatthew Knepley 4601127ca0efSMatthew Knepley Input Parameter: 460211a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4603127ca0efSMatthew Knepley 4604127ca0efSMatthew Knepley Output Parameters: 460511a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 460611a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46072ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4608127ca0efSMatthew Knepley 46090ab4885dSBarry Smith Level: intermediate 46100ab4885dSBarry Smith 461111a5261eSBarry Smith Note: 46122ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46132ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46142ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4615127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4616127ca0efSMatthew Knepley 4617fe59aa6dSJacob Faibussowitsch Fortran Notes: 46180ab4885dSBarry Smith `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()` 4619127ca0efSMatthew Knepley 4620fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4621127ca0efSMatthew Knepley @*/ 4622d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4623d71ae5a4SJacob Faibussowitsch { 4624195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 462504cf37c7SBarry Smith PetscBool flg; 4626b1d57f15SBarry Smith 4627195d93cdSBarry Smith PetscFunctionBegin; 46289566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 462928b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 463021e72a00SBarry Smith if (Ad) *Ad = a->A; 463121e72a00SBarry Smith if (Ao) *Ao = a->B; 463221e72a00SBarry Smith if (colmap) *colmap = a->garray; 46333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4634195d93cdSBarry Smith } 4635a2243be0SBarry Smith 4636d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4637d71ae5a4SJacob Faibussowitsch { 4638110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46399b8102ccSHong Zhang PetscInt *indx; 4640110bb6e1SHong Zhang PetscScalar *values; 4641421ddf4dSJunchao Zhang MatType rootType; 46429b8102ccSHong Zhang 46439b8102ccSHong Zhang PetscFunctionBegin; 46449566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4645110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4646110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4647110bb6e1SHong Zhang 464848a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4649a22543b6SHong Zhang /* Check sum(n) = N */ 46501c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 465108401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4652a22543b6SHong Zhang 46539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46549b8102ccSHong Zhang rstart -= m; 46559b8102ccSHong Zhang 4656d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46579b8102ccSHong Zhang for (i = 0; i < m; i++) { 46589566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46599566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46609566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46619b8102ccSHong Zhang } 46629b8102ccSHong Zhang 46639566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46659566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46669566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46679566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46689566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46709566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4671d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46729566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46739b8102ccSHong Zhang } 46749b8102ccSHong Zhang 4675110bb6e1SHong Zhang /* numeric phase */ 46769566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46779b8102ccSHong Zhang for (i = 0; i < m; i++) { 46789566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46799b8102ccSHong Zhang Ii = i + rstart; 46809566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46819566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46829b8102ccSHong Zhang } 46839566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46849566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4686c5d6d63eSBarry Smith } 4687c5d6d63eSBarry Smith 4688d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data) 4689d71ae5a4SJacob Faibussowitsch { 46906718818eSStefano Zampini Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data; 469151a7d1a8SHong Zhang 469251a7d1a8SHong Zhang PetscFunctionBegin; 46933ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46949566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46959566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 46969566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 46979566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 46989566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 46999566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 47009566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 47019566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 47029566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47039566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47049566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47059566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47069566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47079566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 470951a7d1a8SHong Zhang } 471051a7d1a8SHong Zhang 4711c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4712c6db04a5SJed Brown #include <petscbt.h> 47134ebed01fSBarry Smith 4714d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4715d71ae5a4SJacob Faibussowitsch { 4716ce94432eSBarry Smith MPI_Comm comm; 471755d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4718b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 4719a2ea699eSBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj; 4720b1d57f15SBarry Smith PetscInt proc, m; 4721b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 4722b1d57f15SBarry Smith PetscInt k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4723b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 472455d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 472555d1abb9SHong Zhang MPI_Status *status; 4726fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4727dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 472855d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4729776b82aeSLisandro Dalcin PetscContainer container; 473055d1abb9SHong Zhang 473155d1abb9SHong Zhang PetscFunctionBegin; 47329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47339566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47343c2c1871SHong Zhang 47359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 473755d1abb9SHong Zhang 47389566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 473928b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47409566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4742fff043a9SJunchao Zhang aa = a_a; 4743bf0cc555SLisandro Dalcin 474455d1abb9SHong Zhang bi = merge->bi; 474555d1abb9SHong Zhang bj = merge->bj; 474655d1abb9SHong Zhang buf_ri = merge->buf_ri; 474755d1abb9SHong Zhang buf_rj = merge->buf_rj; 474855d1abb9SHong Zhang 47499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47507a2fc3feSBarry Smith owners = merge->rowmap->range; 475155d1abb9SHong Zhang len_s = merge->len_s; 475255d1abb9SHong Zhang 475355d1abb9SHong Zhang /* send and recv matrix values */ 47549566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47559566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 475655d1abb9SHong Zhang 47579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 475855d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 475955d1abb9SHong Zhang if (!len_s[proc]) continue; 476055d1abb9SHong Zhang i = owners[proc]; 47619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 476255d1abb9SHong Zhang k++; 476355d1abb9SHong Zhang } 476455d1abb9SHong Zhang 47659566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47669566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47679566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 476855d1abb9SHong Zhang 47699566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47709566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 477155d1abb9SHong Zhang 477255d1abb9SHong Zhang /* insert mat values of mpimat */ 47739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47749566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 477555d1abb9SHong Zhang 477655d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 477755d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4778f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 477955d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4780a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 478155d1abb9SHong Zhang } 478255d1abb9SHong Zhang 478355d1abb9SHong Zhang /* set values of ba */ 47847a2fc3feSBarry Smith m = merge->rowmap->n; 478555d1abb9SHong Zhang for (i = 0; i < m; i++) { 478655d1abb9SHong Zhang arow = owners[rank] + i; 478755d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 478855d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47899566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 479055d1abb9SHong Zhang 479155d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 479255d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 479355d1abb9SHong Zhang aj = a->j + ai[arow]; 4794fff043a9SJunchao Zhang aa = a_a + ai[arow]; 479555d1abb9SHong Zhang nextaj = 0; 479655d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 479755d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 479855d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 479955d1abb9SHong Zhang } 480055d1abb9SHong Zhang } 480155d1abb9SHong Zhang 480255d1abb9SHong Zhang /* add received vals into ba */ 480355d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 480455d1abb9SHong Zhang /* i-th row */ 480555d1abb9SHong Zhang if (i == *nextrow[k]) { 480655d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4807f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4808f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 480955d1abb9SHong Zhang nextaj = 0; 481055d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 481155d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 481255d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 481355d1abb9SHong Zhang } 481455d1abb9SHong Zhang } 48159371c9d4SSatish Balay nextrow[k]++; 48169371c9d4SSatish Balay nextai[k]++; 481755d1abb9SHong Zhang } 481855d1abb9SHong Zhang } 48199566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 482055d1abb9SHong Zhang } 48219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48229566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48239566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 482455d1abb9SHong Zhang 48259566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48269566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48279566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48289566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48299566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 483155d1abb9SHong Zhang } 483238f152feSBarry Smith 4833d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4834d71ae5a4SJacob Faibussowitsch { 483555a3bba9SHong Zhang Mat B_mpi; 4836c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4837b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4838b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4839d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 4840a2f3521dSMark F. Adams PetscInt len, proc, *dnz, *onz, bs, cbs; 4841c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4842b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 484355d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 484458cb9c82SHong Zhang MPI_Status *status; 48450298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4846be0fcf8dSHong Zhang PetscBT lnkbt; 484751a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4848776b82aeSLisandro Dalcin PetscContainer container; 484902c68681SHong Zhang 4850e5f2cdd8SHong Zhang PetscFunctionBegin; 48519566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48523c2c1871SHong Zhang 485338f152feSBarry Smith /* make sure it is a PETSc comm */ 48549566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 485755d1abb9SHong Zhang 48589566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4860e5f2cdd8SHong Zhang 48616abd8857SHong Zhang /* determine row ownership */ 48629566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48639566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48649566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48659566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48669566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 486955d1abb9SHong Zhang 48707a2fc3feSBarry Smith m = merge->rowmap->n; 48717a2fc3feSBarry Smith owners = merge->rowmap->range; 48726abd8857SHong Zhang 48736abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48743e06a4e6SHong Zhang len_s = merge->len_s; 487551a7d1a8SHong Zhang 48762257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4877c2234fe3SHong Zhang merge->nsend = 0; 4878409913e3SHong Zhang for (proc = 0; proc < size; proc++) { 48792257cef7SHong Zhang len_si[proc] = 0; 48803e06a4e6SHong Zhang if (proc == rank) { 48816abd8857SHong Zhang len_s[proc] = 0; 48823e06a4e6SHong Zhang } else { 488302c68681SHong Zhang len_si[proc] = owners[proc + 1] - owners[proc] + 1; 48843e06a4e6SHong Zhang len_s[proc] = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */ 48853e06a4e6SHong Zhang } 48863e06a4e6SHong Zhang if (len_s[proc]) { 4887c2234fe3SHong Zhang merge->nsend++; 48882257cef7SHong Zhang nrows = 0; 48892257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48902257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48912257cef7SHong Zhang } 48922257cef7SHong Zhang len_si[proc] = 2 * (nrows + 1); 48932257cef7SHong Zhang len += len_si[proc]; 4894409913e3SHong Zhang } 489558cb9c82SHong Zhang } 4896409913e3SHong Zhang 48972257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 48989566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 48999566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4900671beff6SHong Zhang 49013e06a4e6SHong Zhang /* post the Irecv of j-structure */ 49029566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49039566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 490402c68681SHong Zhang 49053e06a4e6SHong Zhang /* post the Isend of j-structure */ 49069566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49073e06a4e6SHong Zhang 49082257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 4909409913e3SHong Zhang if (!len_s[proc]) continue; 491002c68681SHong Zhang i = owners[proc]; 49119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 491251a7d1a8SHong Zhang k++; 491351a7d1a8SHong Zhang } 491451a7d1a8SHong Zhang 49153e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49169566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49179566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 491802c68681SHong Zhang 491902c68681SHong Zhang /* send and recv i-structure */ 49209566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49219566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 492202c68681SHong Zhang 49239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49243e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49252257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 492602c68681SHong Zhang if (!len_s[proc]) continue; 49273e06a4e6SHong Zhang /* form outgoing message for i-structure: 49283e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49293e06a4e6SHong Zhang [1:nrows]: row index (global) 49303e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49313e06a4e6SHong Zhang */ 49322257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49333e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49343e06a4e6SHong Zhang buf_si[0] = nrows; 49353e06a4e6SHong Zhang buf_si_i[0] = 0; 49363e06a4e6SHong Zhang nrows = 0; 49373e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49383e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49393e06a4e6SHong Zhang if (anzi) { 49403e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49413e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49423e06a4e6SHong Zhang nrows++; 49433e06a4e6SHong Zhang } 49443e06a4e6SHong Zhang } 49459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 494602c68681SHong Zhang k++; 49472257cef7SHong Zhang buf_si += len_si[proc]; 494802c68681SHong Zhang } 49492257cef7SHong Zhang 49509566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49519566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 495202c68681SHong Zhang 49539566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 495448a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49553e06a4e6SHong Zhang 49569566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49579566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49589566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49599566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49609566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49619566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49629566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 496358cb9c82SHong Zhang 4964bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 496558cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 496758cb9c82SHong Zhang bi[0] = 0; 496858cb9c82SHong Zhang 4969be0fcf8dSHong Zhang /* create and initialize a linked list */ 4970be0fcf8dSHong Zhang nlnk = N + 1; 49719566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 497258cb9c82SHong Zhang 4973bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4974bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49759566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49762205254eSKarl Rupp 497758cb9c82SHong Zhang current_space = free_space; 497858cb9c82SHong Zhang 4979bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49809566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49811d79065fSBarry Smith 49823e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49832257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49843e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49853e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4986a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49873e06a4e6SHong Zhang } 49882257cef7SHong Zhang 4989d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4990bcc1bcd5SHong Zhang len = 0; 499158cb9c82SHong Zhang for (i = 0; i < m; i++) { 499258cb9c82SHong Zhang bnzi = 0; 499358cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 499458cb9c82SHong Zhang arow = owners[rank] + i; 499558cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 499658cb9c82SHong Zhang aj = a->j + ai[arow]; 49979566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 499858cb9c82SHong Zhang bnzi += nlnk; 499958cb9c82SHong Zhang /* add received col data into lnk */ 500051a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 500155d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 50023e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50033e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50049566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50053e06a4e6SHong Zhang bnzi += nlnk; 50069371c9d4SSatish Balay nextrow[k]++; 50079371c9d4SSatish Balay nextai[k]++; 50083e06a4e6SHong Zhang } 500958cb9c82SHong Zhang } 5010bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 501158cb9c82SHong Zhang 501258cb9c82SHong Zhang /* if free space is not available, make more free space */ 501348a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 501458cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50159566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50169566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5017bcc1bcd5SHong Zhang 501858cb9c82SHong Zhang current_space->array += bnzi; 501958cb9c82SHong Zhang current_space->local_used += bnzi; 502058cb9c82SHong Zhang current_space->local_remaining -= bnzi; 502158cb9c82SHong Zhang 502258cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 502358cb9c82SHong Zhang } 5024bcc1bcd5SHong Zhang 50259566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5026bcc1bcd5SHong Zhang 50279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50289566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50299566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5030409913e3SHong Zhang 5031bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50339566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 503454b84b50SHong Zhang if (n == PETSC_DECIDE) { 50359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 503654b84b50SHong Zhang } else { 50379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 503854b84b50SHong Zhang } 50399566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50409566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50419566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5042d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50439566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 504458cb9c82SHong Zhang 504590431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50466abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5047affca5deSHong Zhang merge->bi = bi; 5048affca5deSHong Zhang merge->bj = bj; 504902c68681SHong Zhang merge->buf_ri = buf_ri; 505002c68681SHong Zhang merge->buf_rj = buf_rj; 50510298fd71SBarry Smith merge->coi = NULL; 50520298fd71SBarry Smith merge->coj = NULL; 50530298fd71SBarry Smith merge->owners_co = NULL; 5054affca5deSHong Zhang 50559566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5056bf0cc555SLisandro Dalcin 5057affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50589566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50599566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 50609566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50619566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50629566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5063affca5deSHong Zhang *mpimat = B_mpi; 506438f152feSBarry Smith 50659566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5067e5f2cdd8SHong Zhang } 506825616d81SHong Zhang 5069d4036a1aSHong Zhang /*@C 507011a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5071d4036a1aSHong Zhang matrices from each processor 5072d4036a1aSHong Zhang 5073d083f849SBarry Smith Collective 5074d4036a1aSHong Zhang 5075d4036a1aSHong Zhang Input Parameters: 5076d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5077d4036a1aSHong Zhang . seqmat - the input sequential matrices 507811a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 507911a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 508011a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5081d4036a1aSHong Zhang 5082d4036a1aSHong Zhang Output Parameter: 5083d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5084d4036a1aSHong Zhang 5085d4036a1aSHong Zhang Level: advanced 5086d4036a1aSHong Zhang 508711a5261eSBarry Smith Note: 5088d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5089d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5090b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 50912ef1f0ffSBarry Smith 50921cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5093d4036a1aSHong Zhang @*/ 5094d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5095d71ae5a4SJacob Faibussowitsch { 50967e63b356SHong Zhang PetscMPIInt size; 509755d1abb9SHong Zhang 509855d1abb9SHong Zhang PetscFunctionBegin; 50999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 51007e63b356SHong Zhang if (size == 1) { 51019566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 51027e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51039566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51047e63b356SHong Zhang } else { 51059566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51067e63b356SHong Zhang } 51079566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51097e63b356SHong Zhang } 51109566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 511148a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51129566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51139566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 511555d1abb9SHong Zhang } 51164ebed01fSBarry Smith 5117bc08b0f1SBarry Smith /*@ 51182920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51198a9c020eSBarry Smith 51208a9c020eSBarry Smith Not Collective 51218a9c020eSBarry Smith 51222fe279fdSBarry Smith Input Parameter: 512320f4b53cSBarry Smith . A - the matrix 51248a9c020eSBarry Smith 51258a9c020eSBarry Smith Output Parameter: 51268a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51278a9c020eSBarry Smith 51288a9c020eSBarry Smith Level: developer 51298a9c020eSBarry Smith 51308a9c020eSBarry Smith Notes: 51312920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51322920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51332920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51342920cce0SJacob Faibussowitsch 513511a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51368a9c020eSBarry Smith 51372920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51382920cce0SJacob Faibussowitsch 513911a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51408a9c020eSBarry Smith 51411cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51428a9c020eSBarry Smith @*/ 5143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5144d71ae5a4SJacob Faibussowitsch { 51458a9c020eSBarry Smith PetscBool mpi; 51468a9c020eSBarry Smith 51478a9c020eSBarry Smith PetscFunctionBegin; 51488a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51498a9c020eSBarry Smith if (mpi) { 51508a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51518a9c020eSBarry Smith } else { 51528a9c020eSBarry Smith *A_loc = A; 51538a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51548a9c020eSBarry Smith } 51553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51568a9c020eSBarry Smith } 51578a9c020eSBarry Smith 51588a9c020eSBarry Smith /*@ 51592920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 516025616d81SHong Zhang 516132fba14fSHong Zhang Not Collective 516225616d81SHong Zhang 516325616d81SHong Zhang Input Parameters: 516425616d81SHong Zhang + A - the matrix 516511a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 516625616d81SHong Zhang 516725616d81SHong Zhang Output Parameter: 516825616d81SHong Zhang . A_loc - the local sequential matrix generated 516925616d81SHong Zhang 517025616d81SHong Zhang Level: developer 517125616d81SHong Zhang 517277c65a98SStefano Zampini Notes: 51732920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51742920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51752920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51762920cce0SJacob Faibussowitsch 517711a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51788a9c020eSBarry Smith 51792920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51802920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51812920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51822920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 518377c65a98SStefano Zampini 51841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 518525616d81SHong Zhang @*/ 5186d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5187d71ae5a4SJacob Faibussowitsch { 518801b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5189b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5190b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5191ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5192ce496241SStefano Zampini PetscScalar *ca, *cam; 519377c65a98SStefano Zampini PetscMPIInt size; 5194d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51955a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 51968661ff28SBarry Smith PetscBool match; 519725616d81SHong Zhang 519825616d81SHong Zhang PetscFunctionBegin; 51999566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 520028b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 52019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 520277c65a98SStefano Zampini if (size == 1) { 520377c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52049566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 520577c65a98SStefano Zampini *A_loc = mpimat->A; 520677c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52079566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 520877c65a98SStefano Zampini } 52093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 521077c65a98SStefano Zampini } 521170a9ba44SHong Zhang 52129566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5213f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5214f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 52159371c9d4SSatish Balay ai = a->i; 52169371c9d4SSatish Balay aj = a->j; 52179371c9d4SSatish Balay bi = b->i; 52189371c9d4SSatish Balay bj = b->j; 52199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5221ce496241SStefano Zampini aa = aav; 5222ce496241SStefano Zampini ba = bav; 522301b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5225dea91ad1SHong Zhang ci[0] = 0; 5226ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5229dea91ad1SHong Zhang k = 0; 523001b7ae99SHong Zhang for (i = 0; i < am; i++) { 52315a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52325a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 523301b7ae99SHong Zhang /* off-diagonal portion of A */ 52345a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52355a7d977cSHong Zhang col = cmap[*bj]; 52365a7d977cSHong Zhang if (col >= cstart) break; 52379371c9d4SSatish Balay cj[k] = col; 52389371c9d4SSatish Balay bj++; 52395a7d977cSHong Zhang ca[k++] = *ba++; 52405a7d977cSHong Zhang } 52415a7d977cSHong Zhang /* diagonal portion of A */ 52425a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52435a7d977cSHong Zhang cj[k] = cstart + *aj++; 52445a7d977cSHong Zhang ca[k++] = *aa++; 52455a7d977cSHong Zhang } 52465a7d977cSHong Zhang /* off-diagonal portion of A */ 52475a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52485a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52495a7d977cSHong Zhang ca[k++] = *ba++; 52505a7d977cSHong Zhang } 525125616d81SHong Zhang } 5252dea91ad1SHong Zhang /* put together the new matrix */ 52539566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5254dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5255dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5256dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5257e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5258e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5259dea91ad1SHong Zhang mat->nonew = 0; 52605a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52615a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5262fff043a9SJunchao Zhang ci = mat->i; 5263fff043a9SJunchao Zhang cj = mat->j; 52649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52655a7d977cSHong Zhang for (i = 0; i < am; i++) { 52665a7d977cSHong Zhang /* off-diagonal portion of A */ 52675a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52685a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52695a7d977cSHong Zhang col = cmap[*bj]; 52705a7d977cSHong Zhang if (col >= cstart) break; 52719371c9d4SSatish Balay *cam++ = *ba++; 52729371c9d4SSatish Balay bj++; 52735a7d977cSHong Zhang } 52745a7d977cSHong Zhang /* diagonal portion of A */ 5275ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5276a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52775a7d977cSHong Zhang /* off-diagonal portion of A */ 5278f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52799371c9d4SSatish Balay *cam++ = *ba++; 52809371c9d4SSatish Balay bj++; 5281f33d1a9aSHong Zhang } 52825a7d977cSHong Zhang } 52839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 528498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52879566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 528925616d81SHong Zhang } 529025616d81SHong Zhang 5291ed502f03SStefano Zampini /*@ 529211a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52934cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5294ed502f03SStefano Zampini 5295ed502f03SStefano Zampini Not Collective 5296ed502f03SStefano Zampini 5297ed502f03SStefano Zampini Input Parameters: 5298ed502f03SStefano Zampini + A - the matrix 529911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5300ed502f03SStefano Zampini 5301d8d19677SJose E. Roman Output Parameters: 53022ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5303ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5304ed502f03SStefano Zampini 5305ed502f03SStefano Zampini Level: developer 5306ed502f03SStefano Zampini 530711a5261eSBarry Smith Note: 53082ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53094cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5310ed502f03SStefano Zampini 53111cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5312ed502f03SStefano Zampini @*/ 5313d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5314d71ae5a4SJacob Faibussowitsch { 5315ed502f03SStefano Zampini Mat Ao, Ad; 5316ed502f03SStefano Zampini const PetscInt *cmap; 5317ed502f03SStefano Zampini PetscMPIInt size; 5318ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5319ed502f03SStefano Zampini 5320ed502f03SStefano Zampini PetscFunctionBegin; 53219566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5323ed502f03SStefano Zampini if (size == 1) { 5324ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53259566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5326ed502f03SStefano Zampini *A_loc = Ad; 5327ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53289566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5329ed502f03SStefano Zampini } 53309566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5332ed502f03SStefano Zampini } 53339566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53349566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5335ed502f03SStefano Zampini if (f) { 53369566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5337ed502f03SStefano Zampini } else { 5338ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5339ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5340ed502f03SStefano Zampini Mat_SeqAIJ *c; 5341ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5342ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5343ed502f03SStefano Zampini PetscInt *ci, *cj; 5344ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5345ed502f03SStefano Zampini PetscScalar *ca; 5346ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5347ed502f03SStefano Zampini 53489566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53499566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5352ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5353ed502f03SStefano Zampini PetscInt k; 53549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5357ed502f03SStefano Zampini ci[0] = 0; 5358ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5359ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5360ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5361ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5362ed502f03SStefano Zampini /* diagonal portion of A */ 5363ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5364ed502f03SStefano Zampini cj[k] = *aj++; 5365ed502f03SStefano Zampini ca[k] = *aa++; 5366ed502f03SStefano Zampini } 5367ed502f03SStefano Zampini /* off-diagonal portion of A */ 5368ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5369ed502f03SStefano Zampini cj[k] = dn + *bj++; 5370ed502f03SStefano Zampini ca[k] = *ba++; 5371ed502f03SStefano Zampini } 5372ed502f03SStefano Zampini } 5373ed502f03SStefano Zampini /* put together the new matrix */ 53749566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5375ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5376ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5377ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5378ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5379ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5380ed502f03SStefano Zampini c->nonew = 0; 53819566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5382ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5384ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5385ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5386ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5387ed502f03SStefano Zampini /* diagonal portion of A */ 5388ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5389ed502f03SStefano Zampini /* off-diagonal portion of A */ 5390ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5391ed502f03SStefano Zampini } 53929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 539398921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5396ed502f03SStefano Zampini if (glob) { 5397ed502f03SStefano Zampini PetscInt cst, *gidx; 5398ed502f03SStefano Zampini 53999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 54009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5401ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5402ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54039566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5404ed502f03SStefano Zampini } 5405ed502f03SStefano Zampini } 54069566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5408ed502f03SStefano Zampini } 5409ed502f03SStefano Zampini 541032fba14fSHong Zhang /*@C 541111a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 541232fba14fSHong Zhang 541332fba14fSHong Zhang Not Collective 541432fba14fSHong Zhang 541532fba14fSHong Zhang Input Parameters: 541632fba14fSHong Zhang + A - the matrix 541711a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 541820f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 541920f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 542032fba14fSHong Zhang 542132fba14fSHong Zhang Output Parameter: 542232fba14fSHong Zhang . A_loc - the local sequential matrix generated 542332fba14fSHong Zhang 542432fba14fSHong Zhang Level: developer 542532fba14fSHong Zhang 54261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 542732fba14fSHong Zhang @*/ 5428d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5429d71ae5a4SJacob Faibussowitsch { 543032fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 543132fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 543232fba14fSHong Zhang IS isrowa, iscola; 543332fba14fSHong Zhang Mat *aloc; 54344a2b5492SBarry Smith PetscBool match; 543532fba14fSHong Zhang 543632fba14fSHong Zhang PetscFunctionBegin; 54379566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 543828b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54399566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 544032fba14fSHong Zhang if (!row) { 54419371c9d4SSatish Balay start = A->rmap->rstart; 54429371c9d4SSatish Balay end = A->rmap->rend; 54439566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 544432fba14fSHong Zhang } else { 544532fba14fSHong Zhang isrowa = *row; 544632fba14fSHong Zhang } 544732fba14fSHong Zhang if (!col) { 5448d0f46423SBarry Smith start = A->cmap->rstart; 544932fba14fSHong Zhang cmap = a->garray; 5450d0f46423SBarry Smith nzA = a->A->cmap->n; 5451d0f46423SBarry Smith nzB = a->B->cmap->n; 54529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 545332fba14fSHong Zhang ncols = 0; 545432fba14fSHong Zhang for (i = 0; i < nzB; i++) { 545532fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 545632fba14fSHong Zhang else break; 545732fba14fSHong Zhang } 545832fba14fSHong Zhang imark = i; 545932fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 546032fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54619566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 546232fba14fSHong Zhang } else { 546332fba14fSHong Zhang iscola = *col; 546432fba14fSHong Zhang } 546532fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 546732fba14fSHong Zhang aloc[0] = *A_loc; 546832fba14fSHong Zhang } 54699566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5470109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54719566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5472109e0772SStefano Zampini } 547332fba14fSHong Zhang *A_loc = aloc[0]; 54749566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 547548a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 547648a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54779566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 547932fba14fSHong Zhang } 548032fba14fSHong Zhang 54815c65b9ecSFande Kong /* 54825c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54835c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54845c65b9ecSFande Kong * on a global size. 54855c65b9ecSFande Kong * */ 5486ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5487d71ae5a4SJacob Faibussowitsch { 54885c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5489f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5490131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5491131c27b5Sprj- PetscMPIInt owner; 54925c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54935c65b9ecSFande Kong const PetscInt *lrowindices; 54945c65b9ecSFande Kong PetscSF sf, osf; 54955c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 54965c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 54975c65b9ecSFande Kong MPI_Comm comm; 54985c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5499fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 55005c65b9ecSFande Kong 55015c65b9ecSFande Kong PetscFunctionBegin; 55029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55035c65b9ecSFande Kong /* plocalsize is the number of roots 55045c65b9ecSFande Kong * nrows is the number of leaves 55055c65b9ecSFande Kong * */ 55069566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55079566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55089566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55105c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55115c65b9ecSFande Kong /* Find a remote index and an owner for a row 55125c65b9ecSFande Kong * The row could be local or remote 55135c65b9ecSFande Kong * */ 551434bcad68SFande Kong owner = 0; 551534bcad68SFande Kong lidx = 0; 55169566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55175c65b9ecSFande Kong iremote[i].index = lidx; 55185c65b9ecSFande Kong iremote[i].rank = owner; 55195c65b9ecSFande Kong } 55205c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55219566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5522f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55235c65b9ecSFande Kong * offsets 55245c65b9ecSFande Kong * */ 55259566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55269566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55279566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5528bc8e477aSFande Kong 55299566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55309566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55319566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55325c65b9ecSFande Kong roffsets[0] = 0; 55335c65b9ecSFande Kong roffsets[1] = 0; 55345c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55354cf0e950SBarry Smith /* diagonal */ 55365c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55374cf0e950SBarry Smith /* off-diagonal */ 55385c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55395c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55405c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55415c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55425c65b9ecSFande Kong } 55439566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55449566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55455c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55469566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55479566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55489566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55509566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55519566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55529566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55535c65b9ecSFande Kong dntotalcols = 0; 55545c65b9ecSFande Kong ontotalcols = 0; 5555bc8e477aSFande Kong ncol = 0; 55565c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55575c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5558bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55594cf0e950SBarry Smith /* diagonal */ 55605c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55614cf0e950SBarry Smith /* off-diagonal */ 55625c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55635c65b9ecSFande Kong } 55645c65b9ecSFande Kong /* We do not need to figure the right number of columns 55655c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55665c65b9ecSFande Kong * */ 55679566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55689566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55699566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55705c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55714cf0e950SBarry Smith /* diagonal */ 55729566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55734cf0e950SBarry Smith /* off-diagonal */ 55749566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55754cf0e950SBarry Smith /* diagonal */ 55769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55774cf0e950SBarry Smith /* off-diagonal */ 55789566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55795c65b9ecSFande Kong dntotalcols = 0; 55805c65b9ecSFande Kong ontotalcols = 0; 55815c65b9ecSFande Kong ntotalcols = 0; 55825c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 558334bcad68SFande Kong owner = 0; 55849566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55855c65b9ecSFande Kong /* Set iremote for diag matrix */ 55865c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55875c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55885c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55895c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55905c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55915c65b9ecSFande Kong } 55924cf0e950SBarry Smith /* off-diagonal */ 55935c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55945c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55955c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 55965c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 55975c65b9ecSFande Kong } 55985c65b9ecSFande Kong } 55999566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 56009566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 56019566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 56029566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56035c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56045c65b9ecSFande Kong * Diag matrix 56055c65b9ecSFande Kong * */ 56069566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56079566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56089566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56095c65b9ecSFande Kong 56109566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56114cf0e950SBarry Smith /* off-diagonal */ 56129566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56139566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56149566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56174cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56189566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56199566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56209566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56215c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56225c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56245c65b9ecSFande Kong /* We want P_oth store global indices */ 56259566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56265c65b9ecSFande Kong /* Use memory scalable approach */ 56279566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56289566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56299566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56309566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56315c65b9ecSFande Kong /* Convert back to local indices */ 56325c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56339566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56345c65b9ecSFande Kong nout = 0; 56359566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 563608401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56379566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56385c65b9ecSFande Kong /* Exchange values */ 56399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56435c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56445c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56459566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56469566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56475c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56489566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56499566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56509566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56519566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56535c65b9ecSFande Kong } 56545c65b9ecSFande Kong 56555c65b9ecSFande Kong /* 56565c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56575c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56585c65b9ecSFande Kong * */ 5659d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5660d71ae5a4SJacob Faibussowitsch { 56615c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5662bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5663bc8e477aSFande Kong IS rows, map; 5664bc8e477aSFande Kong PetscHMapI hamp; 5665bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56665c65b9ecSFande Kong MPI_Comm comm; 56675c65b9ecSFande Kong PetscSF sf, osf; 5668bc8e477aSFande Kong PetscBool has; 56695c65b9ecSFande Kong 56705c65b9ecSFande Kong PetscFunctionBegin; 56719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56729566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56735c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56745c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56755c65b9ecSFande Kong * */ 56765c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56775c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5678eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56799566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5680bc8e477aSFande Kong count = 0; 5681bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5682bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5683bc8e477aSFande Kong key = a->garray[i] / dof; 56849566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5685bc8e477aSFande Kong if (!has) { 5686bc8e477aSFande Kong mapping[i] = count; 56879566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5688bc8e477aSFande Kong } else { 5689bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5690bc8e477aSFande Kong mapping[i] = count - 1; 56915c65b9ecSFande Kong } 5692bc8e477aSFande Kong } 56939566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56949566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5695eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 56969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 56975c65b9ecSFande Kong off = 0; 56989566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 56999566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 57009566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 57019566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 57025c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57039566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57049566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57059566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57069566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57079566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57085c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57095c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 571035cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5711fff043a9SJunchao Zhang */ 5712fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5713fff043a9SJunchao Zhang 57149566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57159566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 571608401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57175c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57185c65b9ecSFande Kong /* Update values in place */ 57199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57249566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57276718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57289566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57305c65b9ecSFande Kong } 57315c65b9ecSFande Kong 573225616d81SHong Zhang /*@C 573320f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 573425616d81SHong Zhang 5735c3339decSBarry Smith Collective 573625616d81SHong Zhang 573725616d81SHong Zhang Input Parameters: 573811a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 573911a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 574011a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 574125616d81SHong Zhang 5742f1a722f8SMatthew G. Knepley Output Parameters: 574327430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 574427430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5745f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 574625616d81SHong Zhang 574725616d81SHong Zhang Level: developer 574825616d81SHong Zhang 574920f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 575025616d81SHong Zhang @*/ 5751d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5752d71ae5a4SJacob Faibussowitsch { 5753899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5754b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 575525616d81SHong Zhang IS isrowb, iscolb; 57560298fd71SBarry Smith Mat *bseq = NULL; 575725616d81SHong Zhang 575825616d81SHong Zhang PetscFunctionBegin; 575920f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 576020f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57619566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 576225616d81SHong Zhang 576325616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5764d0f46423SBarry Smith start = A->cmap->rstart; 576525616d81SHong Zhang cmap = a->garray; 5766d0f46423SBarry Smith nzA = a->A->cmap->n; 5767d0f46423SBarry Smith nzB = a->B->cmap->n; 57689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 576925616d81SHong Zhang ncols = 0; 57700390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 577125616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 577225616d81SHong Zhang else break; 577325616d81SHong Zhang } 577425616d81SHong Zhang imark = i; 57750390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57760390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57779566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57789566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 577925616d81SHong Zhang } else { 578008401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57819371c9d4SSatish Balay isrowb = *rowb; 57829371c9d4SSatish Balay iscolb = *colb; 57839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 578425616d81SHong Zhang bseq[0] = *B_seq; 578525616d81SHong Zhang } 57869566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 578725616d81SHong Zhang *B_seq = bseq[0]; 57889566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 578925616d81SHong Zhang if (!rowb) { 57909566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 579125616d81SHong Zhang } else { 579225616d81SHong Zhang *rowb = isrowb; 579325616d81SHong Zhang } 579425616d81SHong Zhang if (!colb) { 57959566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 579625616d81SHong Zhang } else { 579725616d81SHong Zhang *colb = iscolb; 579825616d81SHong Zhang } 57999566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 58003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 580125616d81SHong Zhang } 5802429d309bSHong Zhang 5803f8487c73SHong Zhang /* 580427430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 580501b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5806429d309bSHong Zhang 5807c3339decSBarry Smith Collective 5808429d309bSHong Zhang 5809429d309bSHong Zhang Input Parameters: 581027430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 581127430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5812429d309bSHong Zhang 5813429d309bSHong Zhang Output Parameter: 58140298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58150298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58160298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5817598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5818429d309bSHong Zhang 581911a5261eSBarry Smith Developer Note: 582011a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58216eb45d04SBarry Smith for this matrix. This is not desirable.. 58226eb45d04SBarry Smith 5823429d309bSHong Zhang Level: developer 5824429d309bSHong Zhang 5825f8487c73SHong Zhang */ 5826d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5827d71ae5a4SJacob Faibussowitsch { 5828899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 582987025532SHong Zhang Mat_SeqAIJ *b_oth; 58304b8d542aSHong Zhang VecScatter ctx; 5831ce94432eSBarry Smith MPI_Comm comm; 58323515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58333515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5834277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 5835f4259b30SLisandro Dalcin PetscInt i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len; 5836277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5837ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5838ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5839429d309bSHong Zhang 5840429d309bSHong Zhang PetscFunctionBegin; 58419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5843a7c7454dSHong Zhang 584420f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 584520f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58469566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5848a6b2eed2SHong Zhang 5849ec07b8f8SHong Zhang if (size == 1) { 5850ec07b8f8SHong Zhang startsj_s = NULL; 5851ec07b8f8SHong Zhang bufa_ptr = NULL; 585252f7967eSHong Zhang *B_oth = NULL; 58533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5854ec07b8f8SHong Zhang } 5855ec07b8f8SHong Zhang 5856fa83eaafSHong Zhang ctx = a->Mvctx; 58574b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58584b8d542aSHong Zhang 58599566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58603515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58619566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58629566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5864ddea5d60SJunchao Zhang rwaits = reqs; 58658e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5866429d309bSHong Zhang 5867b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5868429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5869a6b2eed2SHong Zhang /* i-array */ 5870a6b2eed2SHong Zhang /* post receives */ 58719566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5872a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 587374268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5874e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5876429d309bSHong Zhang } 5877a6b2eed2SHong Zhang 5878a6b2eed2SHong Zhang /* pack the outgoing message */ 58799566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58802205254eSKarl Rupp 58812205254eSKarl Rupp sstartsj[0] = 0; 58822205254eSKarl Rupp rstartsj[0] = 0; 5883a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58843515ee7fSJunchao Zhang if (nsends) { 58853515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58873515ee7fSJunchao Zhang } 5888a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58893515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5890e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 589187025532SHong Zhang for (j = 0; j < nrows; j++) { 5892d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5893e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 58949566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 58952205254eSKarl Rupp 5896e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 58972205254eSKarl Rupp 5898e42f35eeSHong Zhang len += ncols; 58999566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5900e42f35eeSHong Zhang } 5901a6b2eed2SHong Zhang k++; 5902429d309bSHong Zhang } 59039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59042205254eSKarl Rupp 5905dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5906429d309bSHong Zhang } 590787025532SHong Zhang /* recvs and sends of i-array are completed */ 59089566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59099566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5910e42f35eeSHong Zhang 5911a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5914a6b2eed2SHong Zhang 591587025532SHong Zhang /* create i-array of B_oth */ 59169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59172205254eSKarl Rupp 591887025532SHong Zhang b_othi[0] = 0; 5919a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5920a6b2eed2SHong Zhang k = 0; 5921a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59223515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59233515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 592487025532SHong Zhang for (j = 0; j < nrows; j++) { 592587025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59269566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5927f91af8c7SBarry Smith k++; 5928a6b2eed2SHong Zhang } 5929dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5930a6b2eed2SHong Zhang } 59319566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5932a6b2eed2SHong Zhang 59336aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5936a6b2eed2SHong Zhang 593787025532SHong Zhang /* j-array */ 5938a6b2eed2SHong Zhang /* post receives of j-array */ 5939a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 594087025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5942a6b2eed2SHong Zhang } 5943e42f35eeSHong Zhang 5944e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59453515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5946a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5947e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5948a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 594987025532SHong Zhang for (j = 0; j < nrows; j++) { 5950d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5951e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59529566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5953ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59549566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5955e42f35eeSHong Zhang } 595687025532SHong Zhang } 59579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 595887025532SHong Zhang } 595987025532SHong Zhang 596087025532SHong Zhang /* recvs and sends of j-array are completed */ 59619566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 596287025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5963b7f45c76SHong Zhang sstartsj = *startsj_s; 59641d79065fSBarry Smith rstartsj = *startsj_r; 596587025532SHong Zhang bufa = *bufa_ptr; 596687025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 59679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5968ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 596987025532SHong Zhang 597087025532SHong Zhang /* a-array */ 597187025532SHong Zhang /* post receives of a-array */ 597287025532SHong Zhang for (i = 0; i < nrecvs; i++) { 597387025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 597587025532SHong Zhang } 5976e42f35eeSHong Zhang 5977e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59783515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 597987025532SHong Zhang for (i = 0; i < nsends; i++) { 5980e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 598187025532SHong Zhang bufA = bufa + sstartsj[i]; 598287025532SHong Zhang for (j = 0; j < nrows; j++) { 5983d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5984e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59859566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5986ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59879566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5988e42f35eeSHong Zhang } 5989a6b2eed2SHong Zhang } 59909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5991a6b2eed2SHong Zhang } 599287025532SHong Zhang /* recvs and sends of a-array are completed */ 59939566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59949566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 5995a6b2eed2SHong Zhang 599687025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5997a6b2eed2SHong Zhang /* put together the new matrix */ 59989566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 5999a6b2eed2SHong Zhang 6000a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6001a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 600287025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6003e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6004e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 600587025532SHong Zhang b_oth->nonew = 0; 6006a6b2eed2SHong Zhang 60079566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6008b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60099566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60109566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6011dea91ad1SHong Zhang } else { 6012b7f45c76SHong Zhang *startsj_s = sstartsj; 60131d79065fSBarry Smith *startsj_r = rstartsj; 601487025532SHong Zhang *bufa_ptr = bufa; 601587025532SHong Zhang } 6016fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6018dea91ad1SHong Zhang } 60193515ee7fSJunchao Zhang 60209566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60219566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60229566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6024429d309bSHong Zhang } 6025ccd8e176SBarry Smith 6026cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6027cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6028ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60299779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6030a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6031191b95cbSRichard Tran Mills #endif 6032ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6033cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60345d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6035cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60365d7652ecSHong Zhang #endif 6037d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6038d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6039d24d4204SJose E. Roman #endif 604063c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 604163c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 604263c07aadSStefano Zampini #endif 60433338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60443338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60453338378cSStefano Zampini #endif 6046d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6047d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6048d5e393b6SSuyash Tandon #endif 60493d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60503d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60513d0639e7SStefano Zampini #endif 6052d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60534222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60544222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 605517667f90SBarry Smith 6056fc4dec0aSBarry Smith /* 6057fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6058fc4dec0aSBarry Smith 6059fc4dec0aSBarry Smith n p p 60602da392ccSBarry Smith [ ] [ ] [ ] 60612da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60622da392ccSBarry Smith [ ] [ ] [ ] 6063fc4dec0aSBarry Smith 6064fc4dec0aSBarry Smith */ 6065d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6066d71ae5a4SJacob Faibussowitsch { 6067fc4dec0aSBarry Smith Mat At, Bt, Ct; 6068fc4dec0aSBarry Smith 6069fc4dec0aSBarry Smith PetscFunctionBegin; 60709566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60719566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 60729566063dSJacob Faibussowitsch PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct)); 60739566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60757fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60769566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60779566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6079fc4dec0aSBarry Smith } 6080fc4dec0aSBarry Smith 6081d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6082d71ae5a4SJacob Faibussowitsch { 60836718818eSStefano Zampini PetscBool cisdense; 6084fc4dec0aSBarry Smith 6085fc4dec0aSBarry Smith PetscFunctionBegin; 608608401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60879566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60889566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6089d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 609048a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60919566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6092f75ecaa4SHong Zhang 60934222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 60943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6095fc4dec0aSBarry Smith } 6096fc4dec0aSBarry Smith 6097d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6098d71ae5a4SJacob Faibussowitsch { 60994222ddf1SHong Zhang Mat_Product *product = C->product; 61004222ddf1SHong Zhang Mat A = product->A, B = product->B; 6101fc4dec0aSBarry Smith 6102fc4dec0aSBarry Smith PetscFunctionBegin; 610320f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 610420f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61054222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61064222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6108fc4dec0aSBarry Smith } 6109fc4dec0aSBarry Smith 6110d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6111d71ae5a4SJacob Faibussowitsch { 61124222ddf1SHong Zhang Mat_Product *product = C->product; 61134222ddf1SHong Zhang 61144222ddf1SHong Zhang PetscFunctionBegin; 611548a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61174222ddf1SHong Zhang } 6118394ed5ebSJunchao Zhang 611927430b45SBarry Smith /* 612027430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6121394ed5ebSJunchao Zhang 6122394ed5ebSJunchao Zhang Input Parameters: 6123394ed5ebSJunchao Zhang 6124651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6125651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6126394ed5ebSJunchao Zhang 6127158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6128394ed5ebSJunchao Zhang 6129394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6130394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6131394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6132394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6133394ed5ebSJunchao Zhang 6134394ed5ebSJunchao Zhang Similar for Set2. 6135394ed5ebSJunchao Zhang 6136394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6137394ed5ebSJunchao Zhang 6138158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6139394ed5ebSJunchao Zhang 6140394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6141394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6142394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6143394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6144394ed5ebSJunchao Zhang */ 6145d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6146d71ae5a4SJacob Faibussowitsch { 6147394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6148394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6149394ed5ebSJunchao Zhang 6150394ed5ebSJunchao Zhang PetscFunctionBegin; 61519566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6152394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6153394ed5ebSJunchao Zhang i[0] = 0; 6154394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6155394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6156394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6157394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6158394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6159394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6160394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6161394ed5ebSJunchao Zhang j[t] = j1[b1]; 6162394ed5ebSJunchao Zhang imap1[t1] = t; 6163394ed5ebSJunchao Zhang imap2[t2] = t; 6164394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6165394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61669371c9d4SSatish Balay t1++; 61679371c9d4SSatish Balay t2++; 61689371c9d4SSatish Balay t++; 6169394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6170394ed5ebSJunchao Zhang j[t] = j1[b1]; 6171394ed5ebSJunchao Zhang imap1[t1] = t; 6172394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61739371c9d4SSatish Balay t1++; 61749371c9d4SSatish Balay t++; 6175394ed5ebSJunchao Zhang } else { 6176394ed5ebSJunchao Zhang j[t] = j2[b2]; 6177394ed5ebSJunchao Zhang imap2[t2] = t; 6178394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61799371c9d4SSatish Balay t2++; 61809371c9d4SSatish Balay t++; 6181394ed5ebSJunchao Zhang } 6182394ed5ebSJunchao Zhang } 6183394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6184394ed5ebSJunchao Zhang while (b1 < e1) { 6185394ed5ebSJunchao Zhang j[t] = j1[b1]; 6186394ed5ebSJunchao Zhang imap1[t1] = t; 6187394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61889371c9d4SSatish Balay t1++; 61899371c9d4SSatish Balay t++; 6190394ed5ebSJunchao Zhang } 6191394ed5ebSJunchao Zhang while (b2 < e2) { 6192394ed5ebSJunchao Zhang j[t] = j2[b2]; 6193394ed5ebSJunchao Zhang imap2[t2] = t; 6194394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61959371c9d4SSatish Balay t2++; 61969371c9d4SSatish Balay t++; 6197394ed5ebSJunchao Zhang } 6198394ed5ebSJunchao Zhang i[r + 1] = t; 6199394ed5ebSJunchao Zhang } 62003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6201394ed5ebSJunchao Zhang } 6202394ed5ebSJunchao Zhang 620327430b45SBarry Smith /* 620427430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6205394ed5ebSJunchao Zhang 6206394ed5ebSJunchao Zhang Input Parameters: 6207394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6208394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6209394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6210394ed5ebSJunchao Zhang 6211394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6212394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6213394ed5ebSJunchao Zhang 6214394ed5ebSJunchao Zhang Output Parameters: 6215394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6216394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6217394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6218394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6219394ed5ebSJunchao Zhang 6220394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6221158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6222158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6223394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6224394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6225394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6226394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6227394ed5ebSJunchao Zhang 6228394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6229394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6230394ed5ebSJunchao Zhang 6231394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6232394ed5ebSJunchao Zhang 6233158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6234394ed5ebSJunchao Zhang */ 6235d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6236d71ae5a4SJacob Faibussowitsch { 6237394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6238394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6239394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6240394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6241394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6242394ed5ebSJunchao Zhang 6243394ed5ebSJunchao Zhang PetscFunctionBegin; 62449566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62459566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6246394ed5ebSJunchao Zhang m = rend - rstart; 6247394ed5ebSJunchao Zhang 6248651b1cf9SStefano Zampini /* Skip negative rows */ 6249651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62509371c9d4SSatish Balay if (i[k] >= 0) break; 6251394ed5ebSJunchao Zhang 6252394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6253394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6254394ed5ebSJunchao Zhang */ 6255394ed5ebSJunchao Zhang while (k < n) { 6256394ed5ebSJunchao Zhang row = i[k]; 6257394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62589371c9d4SSatish Balay for (s = k; s < n; s++) 62599371c9d4SSatish Balay if (i[s] != row) break; 6260651b1cf9SStefano Zampini 6261651b1cf9SStefano Zampini /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */ 6262394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 6263651b1cf9SStefano Zampini if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT; 626454c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6265394ed5ebSJunchao Zhang } 62669566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6267158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6268394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6269394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6270394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6271394ed5ebSJunchao Zhang 6272394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6273394ed5ebSJunchao Zhang Atot += mid - k; 6274394ed5ebSJunchao Zhang Btot += s - mid; 6275394ed5ebSJunchao Zhang 6276651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6277394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6278394ed5ebSJunchao Zhang col = j[p]; 62799371c9d4SSatish Balay do { 6280651b1cf9SStefano Zampini j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */ 62819371c9d4SSatish Balay p++; 6282651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6283394ed5ebSJunchao Zhang Annz++; 6284394ed5ebSJunchao Zhang } 6285394ed5ebSJunchao Zhang 6286651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6287394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6288394ed5ebSJunchao Zhang col = j[p]; 6289d71ae5a4SJacob Faibussowitsch do { 6290d71ae5a4SJacob Faibussowitsch p++; 6291d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6292394ed5ebSJunchao Zhang Bnnz++; 6293394ed5ebSJunchao Zhang } 6294394ed5ebSJunchao Zhang k = s; 6295394ed5ebSJunchao Zhang } 6296394ed5ebSJunchao Zhang 6297394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6298158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6299158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6300158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6301158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6302394ed5ebSJunchao Zhang 63036aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6304394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6305394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6306394ed5ebSJunchao Zhang k = rowBegin[r]; 6307394ed5ebSJunchao Zhang mid = rowMid[r]; 6308394ed5ebSJunchao Zhang s = rowEnd[r]; 63098e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63108e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6311394ed5ebSJunchao Zhang Atot += mid - k; 6312394ed5ebSJunchao Zhang Btot += s - mid; 6313394ed5ebSJunchao Zhang 6314394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6315394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6316394ed5ebSJunchao Zhang col = j[p]; 6317394ed5ebSJunchao Zhang q = p; 6318d71ae5a4SJacob Faibussowitsch do { 6319d71ae5a4SJacob Faibussowitsch p++; 6320d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6321394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6322394ed5ebSJunchao Zhang Annz++; 6323394ed5ebSJunchao Zhang } 6324394ed5ebSJunchao Zhang 6325394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6326394ed5ebSJunchao Zhang col = j[p]; 6327394ed5ebSJunchao Zhang q = p; 6328d71ae5a4SJacob Faibussowitsch do { 6329d71ae5a4SJacob Faibussowitsch p++; 6330d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6331394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6332394ed5ebSJunchao Zhang Bnnz++; 6333394ed5ebSJunchao Zhang } 6334394ed5ebSJunchao Zhang } 6335394ed5ebSJunchao Zhang /* Output */ 6336394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6337394ed5ebSJunchao Zhang *Annz_ = Annz; 6338394ed5ebSJunchao Zhang *Atot_ = Atot; 6339394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6340394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6341394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6342394ed5ebSJunchao Zhang *Btot_ = Btot; 6343394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6345394ed5ebSJunchao Zhang } 6346394ed5ebSJunchao Zhang 634727430b45SBarry Smith /* 634827430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6349158ec288SJunchao Zhang 6350158ec288SJunchao Zhang Input Parameters: 6351158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6352158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6353158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6354651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6355158ec288SJunchao Zhang 6356158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6357158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6358158ec288SJunchao Zhang 6359158ec288SJunchao Zhang Example: 6360158ec288SJunchao Zhang nnz1 = 4 6361158ec288SJunchao Zhang nnz = 6 6362158ec288SJunchao Zhang imap = [1,3,4,5] 6363158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6364158ec288SJunchao Zhang then, 6365158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6366158ec288SJunchao Zhang */ 6367d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6368d71ae5a4SJacob Faibussowitsch { 6369158ec288SJunchao Zhang PetscCount k, p; 6370158ec288SJunchao Zhang 6371158ec288SJunchao Zhang PetscFunctionBegin; 6372158ec288SJunchao Zhang jmap_new[0] = 0; 6373158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6374158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6375158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6376158ec288SJunchao Zhang } 6377158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6379158ec288SJunchao Zhang } 6380158ec288SJunchao Zhang 63812c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data) 63822c4ab24aSJunchao Zhang { 63832c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data; 63842c4ab24aSJunchao Zhang 63852c4ab24aSJunchao Zhang PetscFunctionBegin; 63862c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63872c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63882c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63892c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63902c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63912c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63922c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63932c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 63942c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 63952c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 63962c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 63972c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 63982c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 63992c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 64002c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 64012c4ab24aSJunchao Zhang } 64022c4ab24aSJunchao Zhang 6403d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6404d71ae5a4SJacob Faibussowitsch { 6405394ed5ebSJunchao Zhang MPI_Comm comm; 6406394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6407394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6408394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6409394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64102c4ab24aSJunchao Zhang PetscContainer container; 64112c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6412394ed5ebSJunchao Zhang 6413394ed5ebSJunchao Zhang PetscFunctionBegin; 64149566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64159566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6416cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6417eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6418cbc6b225SStefano Zampini #else 64199566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6420cbc6b225SStefano Zampini #endif 64219566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6422cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6423cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6424cbc6b225SStefano Zampini 64259566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64289566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64299566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64309566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64319566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64329566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64339566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6434394ed5ebSJunchao Zhang 64356aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6436394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6437394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6438e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6439e8729f6fSJunchao Zhang 6440e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6441394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6442394ed5ebSJunchao Zhang 6443394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6444394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6445394ed5ebSJunchao Zhang will have positive row indices. 6446394ed5ebSJunchao Zhang */ 6447394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 6448394ed5ebSJunchao Zhang if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT; /* e.g., -2^31, minimal to move them ahead */ 6449394ed5ebSJunchao Zhang else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */ 6450f7d195e4SLawrence Mitchell else { 6451f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 6452f7d195e4SLawrence Mitchell if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */ 6453f7d195e4SLawrence Mitchell } 6454394ed5ebSJunchao Zhang } 6455394ed5ebSJunchao Zhang 6456da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64579566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6458651b1cf9SStefano Zampini 6459651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6460651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64619371c9d4SSatish Balay if (i1[k] > PETSC_MIN_INT) break; 6462651b1cf9SStefano Zampini PetscInt i1start = k; 6463651b1cf9SStefano Zampini 64649566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */ 6465394ed5ebSJunchao Zhang for (; k < rem; k++) i1[k] += PETSC_MAX_INT; /* Revert row indices of local rows*/ 6466394ed5ebSJunchao Zhang 6467394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6468394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6469394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6470394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6471394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6472394ed5ebSJunchao Zhang const PetscInt *ranges; 6473394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6474394ed5ebSJunchao Zhang 64759566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64769566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6477394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6478394ed5ebSJunchao Zhang PetscMPIInt owner; 6479394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6480cbc6b225SStefano Zampini 6481394ed5ebSJunchao Zhang /* Locate a row range */ 6482394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64839566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6484394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6485394ed5ebSJunchao Zhang 6486394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 64879566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6488394ed5ebSJunchao Zhang 6489394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6490394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6491394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6492394ed5ebSJunchao Zhang PetscInt *nentries2; 6493394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6494cbc6b225SStefano Zampini 64959566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 64969566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 64979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 64989566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6499394ed5ebSJunchao Zhang sendto = sendto2; 6500394ed5ebSJunchao Zhang nentries = nentries2; 6501394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6502394ed5ebSJunchao Zhang } 6503394ed5ebSJunchao Zhang sendto[nsend] = owner; 6504394ed5ebSJunchao Zhang nentries[nsend] = p - k; 65059566063dSJacob Faibussowitsch PetscCall(PetscCountCast(p - k, &nentries[nsend])); 6506394ed5ebSJunchao Zhang nsend++; 6507394ed5ebSJunchao Zhang k = p; 6508394ed5ebSJunchao Zhang } 6509394ed5ebSJunchao Zhang 6510394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6511394ed5ebSJunchao Zhang PetscSF sf1; 6512394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6513394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6514394ed5ebSJunchao Zhang PetscInt *offsets; 6515394ed5ebSJunchao Zhang PetscSFNode *iremote; 6516394ed5ebSJunchao Zhang 65179566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6520394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6521394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6522394ed5ebSJunchao Zhang iremote[k].index = 0; 6523394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 652454c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6525394ed5ebSJunchao Zhang } 65269566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65279566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65289566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65299566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6530e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6531394ed5ebSJunchao Zhang 6532394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6533394ed5ebSJunchao Zhang PetscSF sf2; 6534394ed5ebSJunchao Zhang nroots = nroots2; 6535394ed5ebSJunchao Zhang nleaves = nleaves2; 65369566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65379566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6539394ed5ebSJunchao Zhang p = 0; 6540394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 654154c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6542394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6543394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 6544394ed5ebSJunchao Zhang iremote[p].index = offsets[k] + q; 6545394ed5ebSJunchao Zhang } 6546394ed5ebSJunchao Zhang } 65479566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6548394ed5ebSJunchao Zhang 6549394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6550394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6551394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65529566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6553834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6554834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6555834dcf29SHansol Suh PetscInt *i1prem = i1 ? i1 + rem : NULL; /* silence ubsan warnings about pointer arithmetic on null pointer */ 6556834dcf29SHansol Suh PetscInt *j1prem = j1 ? j1 + rem : NULL; 6557834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6558834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6559834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6560834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6561394ed5ebSJunchao Zhang 65629566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65639566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6564394ed5ebSJunchao Zhang 6565394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6566394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65679566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6568394ed5ebSJunchao Zhang 6569651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6570651b1cf9SStefano Zampini PetscCount *Cperm1; 6571834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6572834dcf29SHansol Suh PetscCount *perm1prem = perm1 ? perm1 + rem : NULL; 6573651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6574834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6575651b1cf9SStefano Zampini 6576651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6577651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6578651b1cf9SStefano Zampini PetscBool hypre; 6579651b1cf9SStefano Zampini const char *name; 6580651b1cf9SStefano Zampini PetscCall(PetscObjectGetName((PetscObject)mat, &name)); 6581651b1cf9SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre)); 6582651b1cf9SStefano Zampini if (hypre) { 6583651b1cf9SStefano Zampini PetscInt *minj; 6584651b1cf9SStefano Zampini PetscBT hasdiag; 6585651b1cf9SStefano Zampini 6586651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6587651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 6588651b1cf9SStefano Zampini for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT; 6589651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6590651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6591651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6592651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6593651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6594651b1cf9SStefano Zampini } 6595651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6596651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6597651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6598651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6599651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6600651b1cf9SStefano Zampini } 6601651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6602651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6603651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6604651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6605651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6606651b1cf9SStefano Zampini } 6607651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6608651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6609651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6610651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6611651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6612651b1cf9SStefano Zampini } 6613651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6614651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6615651b1cf9SStefano Zampini } 6616651b1cf9SStefano Zampini 6617651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6618651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6619651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6620651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6621394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6622394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6623394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6624394ed5ebSJunchao Zhang 6625651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66269566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6627651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66289566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6629394ed5ebSJunchao Zhang 6630394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6631394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6632394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6633394ed5ebSJunchao Zhang 66349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6638394ed5ebSJunchao Zhang 6639394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6640158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6641158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6642158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6643158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6644394ed5ebSJunchao Zhang 66459566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66469566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6647158ec288SJunchao Zhang 6648158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6649158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6650158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6651158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6652158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6653158ec288SJunchao Zhang 6654158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6655158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6656158ec288SJunchao Zhang 6657158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6658158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6659158ec288SJunchao Zhang 6660158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6661158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6662158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6663158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66649566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66659566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6666e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66679566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6668394ed5ebSJunchao Zhang 6669158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6670158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6671158ec288SJunchao Zhang 6672394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6673394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6674394ed5ebSJunchao Zhang PetscInt *Aj_new; 66759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66769566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66779566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6678394ed5ebSJunchao Zhang Aj = Aj_new; 6679394ed5ebSJunchao Zhang } 6680394ed5ebSJunchao Zhang 6681394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6682394ed5ebSJunchao Zhang PetscInt *Bj_new; 66839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66849566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66859566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6686394ed5ebSJunchao Zhang Bj = Bj_new; 6687394ed5ebSJunchao Zhang } 6688394ed5ebSJunchao Zhang 6689cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6690394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6691cbc6b225SStefano Zampini MatType rtype; 6692394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6693cf8ba265SJunchao Zhang PetscObjectState state; 66949566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66959566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6696394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 66979371c9d4SSatish Balay if (cstart) { 66989371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 66999371c9d4SSatish Balay } 6700c508b908SBarry Smith 67019566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6702c508b908SBarry Smith 6703c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6704c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 67059566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 67060da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6707c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6708c508b908SBarry Smith 6709c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6710c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 67119566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 67120da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6713c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6714c508b908SBarry Smith 67159566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67165bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6717cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6718cf8ba265SJunchao Zhang PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6719cbc6b225SStefano Zampini 6720394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6721394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 6722394ed5ebSJunchao Zhang a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */ 6723394ed5ebSJunchao Zhang a->free_a = b->free_a = PETSC_TRUE; 6724394ed5ebSJunchao Zhang a->free_ij = b->free_ij = PETSC_TRUE; 6725394ed5ebSJunchao Zhang 6726cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67279566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67289566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67309566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6731cbc6b225SStefano Zampini 67322c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67332c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67342c4ab24aSJunchao Zhang coo->n = coo_n; 67352c4ab24aSJunchao Zhang coo->sf = sf2; 67362c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67372c4ab24aSJunchao Zhang coo->recvlen = nroots; 67382c4ab24aSJunchao Zhang coo->Annz = Annz; 67392c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67402c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67412c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67422c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67432c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67442c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67452c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67462c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67472c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67482c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67492c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67502c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67512c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67522c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67532c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67542c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67552c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67562c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67572c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67582c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67592c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67602c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 67612c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67622c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67632c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6765394ed5ebSJunchao Zhang } 6766394ed5ebSJunchao Zhang 6767d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6768d71ae5a4SJacob Faibussowitsch { 6769394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6770394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6771394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67722c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67732c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67742c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67752c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67762c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67772c4ab24aSJunchao Zhang PetscContainer container; 67782c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6779394ed5ebSJunchao Zhang 6780394ed5ebSJunchao Zhang PetscFunctionBegin; 67812c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67822c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67832c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67842c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67852c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67862c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67872c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67882c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67892c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67902c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67912c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67922c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67932c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67942c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67952c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67962c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 67972c4ab24aSJunchao Zhang 67989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 67999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6800394ed5ebSJunchao Zhang 6801394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 68022c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6803394ed5ebSJunchao Zhang 6804394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 68052c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6806394ed5ebSJunchao Zhang /* Add local entries to A and B */ 68072c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6808da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6809158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6810158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6811394ed5ebSJunchao Zhang } 68122c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6813158ec288SJunchao Zhang PetscScalar sum = 0.0; 6814158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6815158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6816394ed5ebSJunchao Zhang } 68172c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6818394ed5ebSJunchao Zhang 6819394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68202c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6821394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6822394ed5ebSJunchao Zhang } 68232c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6824394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6825394ed5ebSJunchao Zhang } 68269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6829394ed5ebSJunchao Zhang } 6830394ed5ebSJunchao Zhang 6831ccd8e176SBarry Smith /*MC 6832ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6833ccd8e176SBarry Smith 6834ccd8e176SBarry Smith Options Database Keys: 683511a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6836ccd8e176SBarry Smith 6837ccd8e176SBarry Smith Level: beginner 68380cd7f59aSBarry Smith 68390cd7f59aSBarry Smith Notes: 68402ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68410cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68420cd7f59aSBarry Smith in the matrix 68430cd7f59aSBarry Smith 684411a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 684511a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6846ccd8e176SBarry Smith 68471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6848ccd8e176SBarry Smith M*/ 6849d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6850d71ae5a4SJacob Faibussowitsch { 6851ccd8e176SBarry Smith Mat_MPIAIJ *b; 6852ccd8e176SBarry Smith PetscMPIInt size; 6853ccd8e176SBarry Smith 6854ccd8e176SBarry Smith PetscFunctionBegin; 68559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68562205254eSKarl Rupp 68574dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6858ccd8e176SBarry Smith B->data = (void *)b; 6859aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6860ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6861ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6862ccd8e176SBarry Smith b->size = size; 68632205254eSKarl Rupp 68649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6865ccd8e176SBarry Smith 6866ccd8e176SBarry Smith /* build cache for off array entries formed */ 68679566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68682205254eSKarl Rupp 6869ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6870f4259b30SLisandro Dalcin b->colmap = NULL; 6871f4259b30SLisandro Dalcin b->garray = NULL; 6872ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6873ccd8e176SBarry Smith 6874ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68750298fd71SBarry Smith b->lvec = NULL; 68760298fd71SBarry Smith b->Mvctx = NULL; 6877ccd8e176SBarry Smith 6878ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6879f4259b30SLisandro Dalcin b->rowindices = NULL; 6880f4259b30SLisandro Dalcin b->rowvalues = NULL; 6881ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6882ccd8e176SBarry Smith 6883f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68840298fd71SBarry Smith b->spptr = NULL; 6885f60c3dc2SHong Zhang 68869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 68929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68963d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 68979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 68983d0639e7SStefano Zampini #endif 6899d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6900d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6901d5e393b6SSuyash Tandon #endif 69023d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 69039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 69043d0639e7SStefano Zampini #endif 69059779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 69069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6907191b95cbSRichard Tran Mills #endif 69089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 69099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 69109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 69119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 69125d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 69139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 69145d7652ecSHong Zhang #endif 6915d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6917d24d4204SJose E. Roman #endif 69189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69203dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69233dad0653Sstefano_zampini #endif 69249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69289566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6930ccd8e176SBarry Smith } 693181824310SBarry Smith 6932cce60c4dSBarry Smith /*@C 693311a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 693403bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 693503bfb495SBarry Smith 6936d083f849SBarry Smith Collective 693703bfb495SBarry Smith 693803bfb495SBarry Smith Input Parameters: 693903bfb495SBarry Smith + comm - MPI communicator 694011a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 694103bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6942d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 69432ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69442ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69452ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6946483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 694704ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 694803bfb495SBarry Smith . a - matrix values 6949483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69502ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 695103bfb495SBarry Smith - oa - matrix values 695203bfb495SBarry Smith 695303bfb495SBarry Smith Output Parameter: 695403bfb495SBarry Smith . mat - the matrix 695503bfb495SBarry Smith 695603bfb495SBarry Smith Level: advanced 695703bfb495SBarry Smith 695803bfb495SBarry Smith Notes: 6959*f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6960292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 696103bfb495SBarry Smith 69622ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 696303bfb495SBarry Smith 69642ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 696503bfb495SBarry Smith 69667b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69677b55108eSBarry Smith 6968dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6969dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6970dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6971dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 697211a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6973dca341c0SJed Brown communication if it is known that only local entries will be set. 697403bfb495SBarry Smith 69751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6976db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69772b26979fSBarry Smith @*/ 6978d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6979d71ae5a4SJacob Faibussowitsch { 698003bfb495SBarry Smith Mat_MPIAIJ *maij; 698103bfb495SBarry Smith 698203bfb495SBarry Smith PetscFunctionBegin; 698308401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6984aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6985aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69869566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69879566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69889566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 698903bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69902205254eSKarl Rupp 69918d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 699203bfb495SBarry Smith 69939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 699503bfb495SBarry Smith 69969566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 69979566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 699803bfb495SBarry Smith 69999566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 70009566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 70019566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 70029566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 70039566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 70043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 700503bfb495SBarry Smith } 700603bfb495SBarry Smith 70074e84afc0SStefano Zampini typedef struct { 70084e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 70094e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 70104e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 70114e84afc0SStefano Zampini 70124e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 70134e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 70144e84afc0SStefano Zampini PetscScalar *bufa; 70154e84afc0SStefano Zampini Mat P_oth; 70164e84afc0SStefano Zampini 70174e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7018ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70194e84afc0SStefano Zampini 7020ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70214e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70224e84afc0SStefano Zampini of the temporary storage */ 70234e84afc0SStefano Zampini PetscBool reusesym; 70244e84afc0SStefano Zampini 70254e84afc0SStefano Zampini /* support for COO values insertion */ 7026ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7027ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7028ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7029ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7030c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7031c215019aSStefano Zampini PetscMemType mtype; 70324e84afc0SStefano Zampini 70334e84afc0SStefano Zampini /* customization */ 70344e84afc0SStefano Zampini PetscBool abmerge; 7035abb89eb1SStefano Zampini PetscBool P_oth_bind; 70364e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70374e84afc0SStefano Zampini 7038ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7039d71ae5a4SJacob Faibussowitsch { 70404e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70414e84afc0SStefano Zampini PetscInt i; 70424e84afc0SStefano Zampini 70434e84afc0SStefano Zampini PetscFunctionBegin; 70449566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70459566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70469566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70479566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70489566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70499566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70509566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 705148a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70529566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70539566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70549566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70559566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70569566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70579566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70594e84afc0SStefano Zampini } 70604e84afc0SStefano Zampini 7061fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7062fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7063fff043a9SJunchao Zhang */ 7064d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7065d71ae5a4SJacob Faibussowitsch { 7066c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7067c215019aSStefano Zampini 7068c215019aSStefano Zampini PetscFunctionBegin; 70699566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7070c215019aSStefano Zampini if (f) { 70719566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7072c215019aSStefano Zampini } else { 7073c215019aSStefano Zampini const PetscScalar *vv; 7074c215019aSStefano Zampini 70759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7076c215019aSStefano Zampini if (n && idx) { 7077c215019aSStefano Zampini PetscScalar *w = v; 7078c215019aSStefano Zampini const PetscInt *oi = idx; 7079c215019aSStefano Zampini PetscInt j; 7080c215019aSStefano Zampini 7081c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7082c215019aSStefano Zampini } else { 70839566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7084c215019aSStefano Zampini } 70859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7086c215019aSStefano Zampini } 70873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7088c215019aSStefano Zampini } 7089c215019aSStefano Zampini 7090d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7091d71ae5a4SJacob Faibussowitsch { 70924e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70934e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70944e84afc0SStefano Zampini 70954e84afc0SStefano Zampini PetscFunctionBegin; 70964e84afc0SStefano Zampini MatCheckProduct(C, 1); 709728b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 70984e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 70994e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 710048a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 710148a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 71024e84afc0SStefano Zampini } 71034e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7104abb89eb1SStefano Zampini 7105abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 710608401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 71079566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7108abb89eb1SStefano Zampini } 71094e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 71104e84afc0SStefano Zampini PetscInt noff = mmdata->off[i + 1] - mmdata->off[i]; 71114e84afc0SStefano Zampini 71124e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 71134e84afc0SStefano Zampini if (noff) { 7114c215019aSStefano Zampini PetscInt nown = mmdata->own[i + 1] - mmdata->own[i]; 7115c215019aSStefano Zampini 71169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71184e84afc0SStefano Zampini n_o += noff; 71194e84afc0SStefano Zampini n_d += nown; 71204e84afc0SStefano Zampini } else { 7121c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7122c215019aSStefano Zampini 71239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71244e84afc0SStefano Zampini n_d += mm->nz; 71254e84afc0SStefano Zampini } 71264e84afc0SStefano Zampini } 7127c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71289566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71299566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71304e84afc0SStefano Zampini } 71319566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71334e84afc0SStefano Zampini } 71344e84afc0SStefano Zampini 71354e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71364e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7137d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7138d71ae5a4SJacob Faibussowitsch { 71394e84afc0SStefano Zampini Mat_Product *product = C->product; 7140ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71414e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71424e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71434e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71444e84afc0SStefano Zampini IS glob = NULL; 71454e84afc0SStefano Zampini const char *prefix; 71464e84afc0SStefano Zampini char pprefix[256]; 71474e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 714882a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 714982a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7150ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7151ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7152ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7153ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7154ddea5d60SJunchao Zhang 71554e84afc0SStefano Zampini MatProductType ptype; 7156d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71574e84afc0SStefano Zampini PetscMPIInt size; 71584e84afc0SStefano Zampini 71594e84afc0SStefano Zampini PetscFunctionBegin; 71604e84afc0SStefano Zampini MatCheckProduct(C, 1); 716128b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71624e84afc0SStefano Zampini ptype = product->type; 7163b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7164fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7165fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7166fa046f9fSJunchao Zhang } 71674e84afc0SStefano Zampini switch (ptype) { 71684e84afc0SStefano Zampini case MATPRODUCT_AB: 71694e84afc0SStefano Zampini A = product->A; 71704e84afc0SStefano Zampini P = product->B; 71714e84afc0SStefano Zampini m = A->rmap->n; 71724e84afc0SStefano Zampini n = P->cmap->n; 71734e84afc0SStefano Zampini M = A->rmap->N; 71744e84afc0SStefano Zampini N = P->cmap->N; 7175ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71764e84afc0SStefano Zampini break; 71774e84afc0SStefano Zampini case MATPRODUCT_AtB: 71784e84afc0SStefano Zampini P = product->A; 71794e84afc0SStefano Zampini A = product->B; 71804e84afc0SStefano Zampini m = P->cmap->n; 71814e84afc0SStefano Zampini n = A->cmap->n; 71824e84afc0SStefano Zampini M = P->cmap->N; 71834e84afc0SStefano Zampini N = A->cmap->N; 71844e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71854e84afc0SStefano Zampini break; 71864e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71874e84afc0SStefano Zampini A = product->A; 71884e84afc0SStefano Zampini P = product->B; 71894e84afc0SStefano Zampini m = P->cmap->n; 71904e84afc0SStefano Zampini n = P->cmap->n; 71914e84afc0SStefano Zampini M = P->cmap->N; 71924e84afc0SStefano Zampini N = P->cmap->N; 71934e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71944e84afc0SStefano Zampini break; 7195d71ae5a4SJacob Faibussowitsch default: 7196d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 71974e84afc0SStefano Zampini } 71989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 71994e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 72004e84afc0SStefano Zampini 72014e84afc0SStefano Zampini /* defaults */ 72024e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 72034e84afc0SStefano Zampini mp[i] = NULL; 72044e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 72054e84afc0SStefano Zampini rmapt[i] = -1; 72064e84afc0SStefano Zampini cmapt[i] = -1; 72074e84afc0SStefano Zampini rmapa[i] = NULL; 72084e84afc0SStefano Zampini cmapa[i] = NULL; 72094e84afc0SStefano Zampini } 72104e84afc0SStefano Zampini 72114e84afc0SStefano Zampini /* customization */ 72129566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 72134e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 72144e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72154e84afc0SStefano Zampini if (product->api_user) { 7216d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72179566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72189566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7219d0609cedSBarry Smith PetscOptionsEnd(); 72204e84afc0SStefano Zampini } else { 7221d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72229566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72239566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7224d0609cedSBarry Smith PetscOptionsEnd(); 7225abb89eb1SStefano Zampini } 7226abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7227abb89eb1SStefano Zampini if (product->api_user) { 7228d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72299566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7230d0609cedSBarry Smith PetscOptionsEnd(); 7231abb89eb1SStefano Zampini } else { 7232d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72339566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7234d0609cedSBarry Smith PetscOptionsEnd(); 72354e84afc0SStefano Zampini } 72364e84afc0SStefano Zampini } 72374e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72384e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72399566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72409566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72419566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72429566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72439566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7244ddea5d60SJunchao Zhang 7245ddea5d60SJunchao Zhang cp = 0; 72464e84afc0SStefano Zampini switch (ptype) { 72474e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72489566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72494e84afc0SStefano Zampini 7250ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7251ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72524e84afc0SStefano Zampini /* P is product->B */ 72539566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72549566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72559566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72569566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72579566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72589566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72599566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72604e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72619566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72629566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72639566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72644e84afc0SStefano Zampini rmapt[cp] = 1; 72654e84afc0SStefano Zampini cmapt[cp] = 2; 72664e84afc0SStefano Zampini cmapa[cp] = globidx; 72674e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72684e84afc0SStefano Zampini cp++; 7269ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72709566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72719566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72729566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72739566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72749566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72759566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72764e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72779566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72789566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72794e84afc0SStefano Zampini rmapt[cp] = 1; 72804e84afc0SStefano Zampini cmapt[cp] = 1; 72814e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72824e84afc0SStefano Zampini cp++; 72839566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72849566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72859566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72869566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72879566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72889566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72894e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72909566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72919566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72924e84afc0SStefano Zampini rmapt[cp] = 1; 72934e84afc0SStefano Zampini cmapt[cp] = 2; 72944e84afc0SStefano Zampini cmapa[cp] = p->garray; 72954e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72964e84afc0SStefano Zampini cp++; 72974e84afc0SStefano Zampini } 7298ddea5d60SJunchao Zhang 7299ddea5d60SJunchao Zhang /* A_off * P_other */ 73004e84afc0SStefano Zampini if (mmdata->P_oth) { 73019566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 73029566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7303f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73049566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73059566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73069566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73079566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73089566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73099566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73109566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73114e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73129566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73139566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73144e84afc0SStefano Zampini rmapt[cp] = 1; 73154e84afc0SStefano Zampini cmapt[cp] = 2; 73164e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73174e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73184e84afc0SStefano Zampini cp++; 73194e84afc0SStefano Zampini } 73204e84afc0SStefano Zampini break; 7321ddea5d60SJunchao Zhang 73224e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73234e84afc0SStefano Zampini /* A is product->B */ 73249566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7325ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73269566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73279566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73289566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73299566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73309566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73319566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73324e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73339566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73349566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73359566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73364e84afc0SStefano Zampini rmapt[cp] = 2; 73374e84afc0SStefano Zampini rmapa[cp] = globidx; 73384e84afc0SStefano Zampini cmapt[cp] = 2; 73394e84afc0SStefano Zampini cmapa[cp] = globidx; 73404e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73414e84afc0SStefano Zampini cp++; 73424e84afc0SStefano Zampini } else { 73439566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73449566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73459566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73469566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73479566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73489566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73494e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73509566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73519566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73529566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73534e84afc0SStefano Zampini rmapt[cp] = 1; 73544e84afc0SStefano Zampini cmapt[cp] = 2; 73554e84afc0SStefano Zampini cmapa[cp] = globidx; 73564e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73574e84afc0SStefano Zampini cp++; 73589566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73599566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73609566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73619566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73629566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73639566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73644e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73659566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73669566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73674e84afc0SStefano Zampini rmapt[cp] = 2; 73684e84afc0SStefano Zampini rmapa[cp] = p->garray; 73694e84afc0SStefano Zampini cmapt[cp] = 2; 73704e84afc0SStefano Zampini cmapa[cp] = globidx; 73714e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73724e84afc0SStefano Zampini cp++; 73734e84afc0SStefano Zampini } 73744e84afc0SStefano Zampini break; 73754e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73769566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73774e84afc0SStefano Zampini /* P is product->B */ 73789566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73799566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73809566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73819566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73829566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73839566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73849566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73854e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73869566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73879566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73894e84afc0SStefano Zampini rmapt[cp] = 2; 73904e84afc0SStefano Zampini rmapa[cp] = globidx; 73914e84afc0SStefano Zampini cmapt[cp] = 2; 73924e84afc0SStefano Zampini cmapa[cp] = globidx; 73934e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73944e84afc0SStefano Zampini cp++; 73954e84afc0SStefano Zampini if (mmdata->P_oth) { 73969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 73979566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7398f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73999566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 74009566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 74019566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 74029566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74039566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74049566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74059566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74064e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74079566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74089566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74094e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 74104e84afc0SStefano Zampini cp++; 74119566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 74129566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74139566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74149566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74159566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74169566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74174e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74189566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74199566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74204e84afc0SStefano Zampini rmapt[cp] = 2; 74214e84afc0SStefano Zampini rmapa[cp] = globidx; 74224e84afc0SStefano Zampini cmapt[cp] = 2; 74234e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74244e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74254e84afc0SStefano Zampini cp++; 74264e84afc0SStefano Zampini } 74274e84afc0SStefano Zampini break; 7428d71ae5a4SJacob Faibussowitsch default: 7429d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74304e84afc0SStefano Zampini } 74314e84afc0SStefano Zampini /* sanity check */ 74329371c9d4SSatish Balay if (size > 1) 74339371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74344e84afc0SStefano Zampini 74359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7436ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7437ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7438ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7439ddea5d60SJunchao Zhang } 74404e84afc0SStefano Zampini mmdata->cp = cp; 74414e84afc0SStefano Zampini C->product->data = mmdata; 74424e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74434e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74444e84afc0SStefano Zampini 7445c215019aSStefano Zampini /* memory type */ 7446c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74479566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7448d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7450c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7451d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74523214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7453c215019aSStefano Zampini 74544e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7455ddea5d60SJunchao Zhang 7456ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7457ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7458ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7459ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7460ddea5d60SJunchao Zhang */ 74614e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74624e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74634e84afc0SStefano Zampini if (mptmp[cp]) continue; 7464ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74654e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74664e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74674e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74684e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74694e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74704e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74714e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74724e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7473ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7474ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74754e84afc0SStefano Zampini } 74764e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74774e84afc0SStefano Zampini } 7478ddea5d60SJunchao Zhang 7479ddea5d60SJunchao Zhang /* 7480ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7481ddea5d60SJunchao Zhang 7482ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7483ddea5d60SJunchao Zhang 7484d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7485ddea5d60SJunchao Zhang 7486ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7487ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7488ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7489ddea5d60SJunchao Zhang 7490ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7491da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7492ddea5d60SJunchao Zhang */ 74939566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74949566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7495ddea5d60SJunchao Zhang 7496ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7497ddea5d60SJunchao Zhang if (hasoffproc) { 74984e84afc0SStefano Zampini PetscSF msf; 74994e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 75004e84afc0SStefano Zampini 75019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 75029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 75039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7504ddea5d60SJunchao Zhang 75054e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 75064e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75074e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 75084e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7509ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 75104e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75114e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75124e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75134e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 75144e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75154e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75164e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75174e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75184e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75194e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75204e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75214e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75224e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7523ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75244e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75254e84afc0SStefano Zampini *coi++ = gr; 75264e84afc0SStefano Zampini *idxoff++ = j; 75274e84afc0SStefano Zampini } 75284e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75294e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75304e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75314e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75324e84afc0SStefano Zampini } else { /* offdiag */ 75334e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75344e84afc0SStefano Zampini } 75354e84afc0SStefano Zampini ncoo_o += nz; 7536ddea5d60SJunchao Zhang } else { /* this is a local row */ 75374e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75384e84afc0SStefano Zampini } 75394e84afc0SStefano Zampini } 75404e84afc0SStefano Zampini } 75414e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75424e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75434e84afc0SStefano Zampini } 75444e84afc0SStefano Zampini 75459566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75469566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75479566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75489566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75494e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75509566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75519566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75529566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75539566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75549566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75559566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7556ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75579566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75584e84afc0SStefano Zampini coo_i = coo_i2; 75594e84afc0SStefano Zampini coo_j = coo_j2; 75604e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75614e84afc0SStefano Zampini ncoo = ncoo_d; 75629566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7563c215019aSStefano Zampini 75649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75669566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75674e84afc0SStefano Zampini } 7568c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75694e84afc0SStefano Zampini 7570ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75714e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75724e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75734e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75744e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75754e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75764e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75774e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75784e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75794e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75804e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75814e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75824e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75834e84afc0SStefano Zampini 75844e84afc0SStefano Zampini if (mptmp[cp]) continue; 7585ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7586ddea5d60SJunchao Zhang /* fill coo_i */ 75874e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75884e84afc0SStefano Zampini const PetscInt gr = i + rs; 75894e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75904e84afc0SStefano Zampini } 7591ddea5d60SJunchao Zhang /* fill coo_j */ 7592ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75939566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7594ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7595ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7596ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75974e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 75984e84afc0SStefano Zampini } 75994e84afc0SStefano Zampini ncoo_d += mm->nz; 7600ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 76014e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76024e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 76034e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 76044e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7605ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 76064e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7607ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76084e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 76094e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 76104e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7611ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76124e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 76134e84afc0SStefano Zampini } 76144e84afc0SStefano Zampini ncoo_d += nz; 76154e84afc0SStefano Zampini } 76164e84afc0SStefano Zampini } 76174e84afc0SStefano Zampini } 76184e84afc0SStefano Zampini } 761948a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 762148a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76229566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7623ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76249566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76254e84afc0SStefano Zampini 76264e84afc0SStefano Zampini /* preallocate with COO data */ 76279566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76289566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76304e84afc0SStefano Zampini } 76314e84afc0SStefano Zampini 7632d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7633d71ae5a4SJacob Faibussowitsch { 76344e84afc0SStefano Zampini Mat_Product *product = mat->product; 76354e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76364e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7637abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76384e84afc0SStefano Zampini #else 76394e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76404e84afc0SStefano Zampini #endif 76414e84afc0SStefano Zampini 76424e84afc0SStefano Zampini PetscFunctionBegin; 76434e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76444e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 764548a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 764665e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7647abb89eb1SStefano Zampini switch (product->type) { 7648abb89eb1SStefano Zampini case MATPRODUCT_AB: 7649abb89eb1SStefano Zampini if (product->api_user) { 7650d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76519566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7652d0609cedSBarry Smith PetscOptionsEnd(); 7653abb89eb1SStefano Zampini } else { 7654d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76559566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7656d0609cedSBarry Smith PetscOptionsEnd(); 7657abb89eb1SStefano Zampini } 7658abb89eb1SStefano Zampini break; 7659abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7660abb89eb1SStefano Zampini if (product->api_user) { 7661d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76629566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7663d0609cedSBarry Smith PetscOptionsEnd(); 7664abb89eb1SStefano Zampini } else { 7665d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76669566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7667d0609cedSBarry Smith PetscOptionsEnd(); 7668abb89eb1SStefano Zampini } 7669abb89eb1SStefano Zampini break; 7670abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7671abb89eb1SStefano Zampini if (product->api_user) { 7672d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76739566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7674d0609cedSBarry Smith PetscOptionsEnd(); 7675abb89eb1SStefano Zampini } else { 7676d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76779566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7678d0609cedSBarry Smith PetscOptionsEnd(); 7679abb89eb1SStefano Zampini } 7680abb89eb1SStefano Zampini break; 7681d71ae5a4SJacob Faibussowitsch default: 7682d71ae5a4SJacob Faibussowitsch break; 7683abb89eb1SStefano Zampini } 7684abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7685abb89eb1SStefano Zampini } 76864e84afc0SStefano Zampini #endif 76874e84afc0SStefano Zampini if (match) { 76884e84afc0SStefano Zampini switch (product->type) { 76894e84afc0SStefano Zampini case MATPRODUCT_AB: 76904e84afc0SStefano Zampini case MATPRODUCT_AtB: 7691d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7692d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7693d71ae5a4SJacob Faibussowitsch break; 7694d71ae5a4SJacob Faibussowitsch default: 7695d71ae5a4SJacob Faibussowitsch break; 76964e84afc0SStefano Zampini } 76974e84afc0SStefano Zampini } 76984e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 76999566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 77003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 770181824310SBarry Smith } 770298921bdaSJacob Faibussowitsch 770398921bdaSJacob Faibussowitsch /* 770472833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 770572833a62Smarkadams4 770672833a62Smarkadams4 n - the number of block indices in cc[] 770772833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 770872833a62Smarkadams4 */ 7709d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7710d71ae5a4SJacob Faibussowitsch { 771172833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 771272833a62Smarkadams4 const PetscInt *idx; 771372833a62Smarkadams4 771472833a62Smarkadams4 PetscFunctionBegin; 771572833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 771672833a62Smarkadams4 if (nidx) { 771772833a62Smarkadams4 cnt = 0; 771872833a62Smarkadams4 cc[cnt] = idx[0] / bs; 771972833a62Smarkadams4 for (j = 1; j < nidx; j++) { 772072833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 772172833a62Smarkadams4 } 772272833a62Smarkadams4 } 772372833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 772472833a62Smarkadams4 *n = cnt + 1; 77253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772672833a62Smarkadams4 } 772772833a62Smarkadams4 772872833a62Smarkadams4 /* 772972833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 773072833a62Smarkadams4 773172833a62Smarkadams4 ncollapsed - the number of block indices 773272833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 773372833a62Smarkadams4 */ 7734d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7735d71ae5a4SJacob Faibussowitsch { 773672833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 773772833a62Smarkadams4 773872833a62Smarkadams4 PetscFunctionBegin; 773972833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 774072833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 774172833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 774272833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77439371c9d4SSatish Balay cprevtmp = cprev; 77449371c9d4SSatish Balay cprev = merged; 77459371c9d4SSatish Balay merged = cprevtmp; 774672833a62Smarkadams4 } 774772833a62Smarkadams4 *ncollapsed = nprev; 774872833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 775072833a62Smarkadams4 } 775172833a62Smarkadams4 77522d776b49SBarry Smith /* 775372833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 775472833a62Smarkadams4 775572833a62Smarkadams4 Input Parameter: 775672833a62Smarkadams4 . Amat - matrix 775772833a62Smarkadams4 - symmetrize - make the result symmetric 775872833a62Smarkadams4 + scale - scale with diagonal 775972833a62Smarkadams4 776072833a62Smarkadams4 Output Parameter: 776172833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 776272833a62Smarkadams4 776372833a62Smarkadams4 */ 7764e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7765d71ae5a4SJacob Faibussowitsch { 776672833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 776772833a62Smarkadams4 MPI_Comm comm; 776872833a62Smarkadams4 Mat Gmat; 776972833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 777072833a62Smarkadams4 Mat a, b, c; 777172833a62Smarkadams4 MatType jtype; 777272833a62Smarkadams4 777372833a62Smarkadams4 PetscFunctionBegin; 777472833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 777572833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 777672833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 777772833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 777872833a62Smarkadams4 nloc = (Iend - Istart) / bs; 777972833a62Smarkadams4 778072833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 778172833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 778272833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 778372833a62Smarkadams4 778472833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 778572833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 778672833a62Smarkadams4 implementation */ 778772833a62Smarkadams4 if (bs > 1) { 778872833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 778972833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 779072833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 779172833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 779272833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 779372833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 779472833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 77952cf69117Smarkadams4 MatScalar *aa, val, *AA; 77962cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 77979371c9d4SSatish Balay if (isseqaij) { 77989371c9d4SSatish Balay a = Amat; 77999371c9d4SSatish Balay b = NULL; 78009371c9d4SSatish Balay } else { 780172833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 78029371c9d4SSatish Balay a = d->A; 78039371c9d4SSatish Balay b = d->B; 780472833a62Smarkadams4 } 780572833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 780672833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 780772833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 78082cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 780959ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 781059ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 781159ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 781259ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 781359ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 781472833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 781559ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 781659ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 781759ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 781859ee9f9fSPierre Jolivet else { 781959ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 782059ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 782159ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 782272833a62Smarkadams4 } 782359ee9f9fSPierre Jolivet } 782459ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 782559ee9f9fSPierre Jolivet } 782659ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 782772833a62Smarkadams4 if (!ok) { 782872833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 782959ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 783072833a62Smarkadams4 goto old_bs; 783172833a62Smarkadams4 } 783272833a62Smarkadams4 } 783372833a62Smarkadams4 } 783472833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 783572833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 783672833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78372cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 783872833a62Smarkadams4 // diag 783972833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 784072833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 784172833a62Smarkadams4 ai = aseq->i; 784272833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 784372833a62Smarkadams4 aj = aseq->j + ai[brow]; 784472833a62Smarkadams4 for (int k = 0; k < n; k += bs) { // block columns 784572833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 784672833a62Smarkadams4 val = 0; 7847e02fb3cdSMark Adams if (index_size == 0) { 784872833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 784972833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 785072833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // columns in block 785172833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 785272833a62Smarkadams4 } 785372833a62Smarkadams4 } 7854e02fb3cdSMark Adams } else { // use (index,index) value if provided 7855e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7856e02fb3cdSMark Adams int ii = index[iii]; 7857e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 7858e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // columns in block 7859e02fb3cdSMark Adams int jj = index[jjj]; 7860cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7861e02fb3cdSMark Adams } 7862e02fb3cdSMark Adams } 7863e02fb3cdSMark Adams } 786459ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 786572833a62Smarkadams4 AA[k / bs] = val; 786672833a62Smarkadams4 } 786772833a62Smarkadams4 grow = Istart / bs + brow / bs; 786866521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 786972833a62Smarkadams4 } 787072833a62Smarkadams4 // off-diag 787172833a62Smarkadams4 if (ismpiaij) { 787272833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 787372833a62Smarkadams4 const PetscScalar *vals; 787472833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 787572833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 787672833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 787772833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 787872833a62Smarkadams4 for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 787959ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 788072833a62Smarkadams4 AA[k / bs] = 0; 788172833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 788272833a62Smarkadams4 } 788372833a62Smarkadams4 nc = ncols / bs; 788472833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7885e02fb3cdSMark Adams if (index_size == 0) { 788672833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 788772833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 788872833a62Smarkadams4 for (int k = 0; k < ncols; k += bs) { 788972833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // cols in block 789059ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 789172833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 789272833a62Smarkadams4 } 789372833a62Smarkadams4 } 789472833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 789572833a62Smarkadams4 } 7896e02fb3cdSMark Adams } else { // use (index,index) value if provided 7897e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7898e02fb3cdSMark Adams int ii = index[iii]; 7899e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 7900e02fb3cdSMark Adams for (int k = 0; k < ncols; k += bs) { 7901e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // cols in block 7902e02fb3cdSMark Adams int jj = index[jjj]; 7903e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7904e02fb3cdSMark Adams } 7905e02fb3cdSMark Adams } 7906e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7907e02fb3cdSMark Adams } 7908e02fb3cdSMark Adams } 790972833a62Smarkadams4 grow = Istart / bs + brow / bs; 791066521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 791172833a62Smarkadams4 } 791272833a62Smarkadams4 } 791372833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 791472833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79152cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 791672833a62Smarkadams4 } else { 791772833a62Smarkadams4 const PetscScalar *vals; 791872833a62Smarkadams4 const PetscInt *idx; 791972833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 792072833a62Smarkadams4 old_bs: 792172833a62Smarkadams4 /* 792272833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 792372833a62Smarkadams4 */ 792472833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 792572833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 792672833a62Smarkadams4 if (isseqaij) { 792772833a62Smarkadams4 PetscInt max_d_nnz; 792872833a62Smarkadams4 /* 792972833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 793072833a62Smarkadams4 */ 793172833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 793272833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 793372833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 793448a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 793572833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 793672833a62Smarkadams4 } else if (ismpiaij) { 793772833a62Smarkadams4 Mat Daij, Oaij; 793872833a62Smarkadams4 const PetscInt *garray; 793972833a62Smarkadams4 PetscInt max_d_nnz; 794072833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 794172833a62Smarkadams4 /* 794272833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 794372833a62Smarkadams4 */ 794472833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 794572833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 794672833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 794748a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 794872833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 794972833a62Smarkadams4 /* 795072833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 795172833a62Smarkadams4 */ 795272833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 795372833a62Smarkadams4 o_nnz[jj] = 0; 795472833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 795572833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 795672833a62Smarkadams4 o_nnz[jj] += ncols; 795772833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 795872833a62Smarkadams4 } 795972833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 796072833a62Smarkadams4 } 796172833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 796272833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 796372833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 796472833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 796572833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 796672833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 796772833a62Smarkadams4 PetscInt dest_row = Ii / bs; 796872833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 796972833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 797072833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 797172833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 797272833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 797372833a62Smarkadams4 } 797472833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 797572833a62Smarkadams4 } 797672833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 797772833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 797872833a62Smarkadams4 } 797972833a62Smarkadams4 } else { 79802d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79812d776b49SBarry Smith else { 79822d776b49SBarry Smith Gmat = Amat; 79832d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 79842d776b49SBarry Smith } 79859371c9d4SSatish Balay if (isseqaij) { 79869371c9d4SSatish Balay a = Gmat; 79879371c9d4SSatish Balay b = NULL; 79889371c9d4SSatish Balay } else { 798972833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 79909371c9d4SSatish Balay a = d->A; 79919371c9d4SSatish Balay b = d->B; 799272833a62Smarkadams4 } 79932d776b49SBarry Smith if (filter >= 0 || scale) { 79942d776b49SBarry Smith /* take absolute value of each entry */ 799572833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 799672833a62Smarkadams4 MatInfo info; 799772833a62Smarkadams4 PetscScalar *avals; 799872833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 799972833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 800072833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 800172833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 800272833a62Smarkadams4 } 800372833a62Smarkadams4 } 80042d776b49SBarry Smith } 800572833a62Smarkadams4 if (symmetrize) { 8006b94d7dedSBarry Smith PetscBool isset, issym; 8007b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8008b94d7dedSBarry Smith if (!isset || !issym) { 800972833a62Smarkadams4 Mat matTrans; 801072833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80111fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 801272833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 801372833a62Smarkadams4 } 801472833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80152d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 801672833a62Smarkadams4 if (scale) { 801772833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 801872833a62Smarkadams4 Vec diag; 801972833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 802072833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 802172833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 802272833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 802372833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 802472833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 802572833a62Smarkadams4 } 802672833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80272d776b49SBarry Smith 80282d776b49SBarry Smith if (filter >= 0) { 80292ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80302ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80312d776b49SBarry Smith } 803272833a62Smarkadams4 *a_Gmat = Gmat; 80333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 803472833a62Smarkadams4 } 803572833a62Smarkadams4 803672833a62Smarkadams4 /* 803798921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 803898921bdaSJacob Faibussowitsch */ 803998921bdaSJacob Faibussowitsch 804098921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80419566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80429566063dSJacob Faibussowitsch #undef PetscCall 80439371c9d4SSatish Balay #define PetscCall(...) \ 80449371c9d4SSatish Balay do { \ 80455f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 804698921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 804798921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 804898921bdaSJacob Faibussowitsch return; \ 804998921bdaSJacob Faibussowitsch } \ 805098921bdaSJacob Faibussowitsch } while (0) 805198921bdaSJacob Faibussowitsch 805298921bdaSJacob Faibussowitsch #undef SETERRQ 80539371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80549371c9d4SSatish Balay do { \ 805598921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 805698921bdaSJacob Faibussowitsch return; \ 805798921bdaSJacob Faibussowitsch } while (0) 805898921bdaSJacob Faibussowitsch 805998921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 806098921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 806198921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 806298921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 806398921bdaSJacob Faibussowitsch #else 806498921bdaSJacob Faibussowitsch #endif 8065d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8066d71ae5a4SJacob Faibussowitsch { 806798921bdaSJacob Faibussowitsch Mat mat = *mmat; 806898921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 806998921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 807098921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 807198921bdaSJacob Faibussowitsch PetscScalar value; 807298921bdaSJacob Faibussowitsch 807398921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 807498921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80755f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 807698921bdaSJacob Faibussowitsch { 807798921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 807898921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 807998921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 808098921bdaSJacob Faibussowitsch 808198921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 808298921bdaSJacob Faibussowitsch Mat A = aij->A; 808398921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 808498921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 808598921bdaSJacob Faibussowitsch MatScalar *aa; 8086f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 808798921bdaSJacob Faibussowitsch Mat B = aij->B; 808898921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 808998921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 809098921bdaSJacob Faibussowitsch MatScalar *ba; 809198921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 809298921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 809398921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 809498921bdaSJacob Faibussowitsch 809598921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 809698921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 809798921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 809898921bdaSJacob Faibussowitsch 809998921bdaSJacob Faibussowitsch PetscFunctionBegin; 81009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81019566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 810298921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 810398921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81046bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 810598921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 810698921bdaSJacob Faibussowitsch row = im[i] - rstart; 810798921bdaSJacob Faibussowitsch lastcol1 = -1; 810898921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 810998921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 811098921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 811198921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 811298921bdaSJacob Faibussowitsch low1 = 0; 811398921bdaSJacob Faibussowitsch high1 = nrow1; 811498921bdaSJacob Faibussowitsch lastcol2 = -1; 811598921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 811698921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 811798921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 811898921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 811998921bdaSJacob Faibussowitsch low2 = 0; 812098921bdaSJacob Faibussowitsch high2 = nrow2; 812198921bdaSJacob Faibussowitsch 812298921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 812398921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 812498921bdaSJacob Faibussowitsch else value = v[i + j * m]; 812598921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 812698921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 812798921bdaSJacob Faibussowitsch col = in[j] - cstart; 812898921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 812998921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 813098921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 813163a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 813298921bdaSJacob Faibussowitsch } else { 813398921bdaSJacob Faibussowitsch if (mat->was_assembled) { 813448a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 813598921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8136eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 813798921bdaSJacob Faibussowitsch col--; 813898921bdaSJacob Faibussowitsch #else 813998921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 814098921bdaSJacob Faibussowitsch #endif 8141f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 81429566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 814398921bdaSJacob Faibussowitsch col = in[j]; 814498921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 814598921bdaSJacob Faibussowitsch B = aij->B; 814698921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81479371c9d4SSatish Balay bimax = b->imax; 81489371c9d4SSatish Balay bi = b->i; 81499371c9d4SSatish Balay bilen = b->ilen; 81509371c9d4SSatish Balay bj = b->j; 815198921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 815298921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 815398921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 815498921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 815598921bdaSJacob Faibussowitsch low2 = 0; 815698921bdaSJacob Faibussowitsch high2 = nrow2; 815798921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 815898921bdaSJacob Faibussowitsch ba = b->a; 815998921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 816098921bdaSJacob Faibussowitsch } 816198921bdaSJacob Faibussowitsch } else col = in[j]; 816298921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 816398921bdaSJacob Faibussowitsch } 816498921bdaSJacob Faibussowitsch } 816598921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 816698921bdaSJacob Faibussowitsch if (roworiented) { 81679566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 816898921bdaSJacob Faibussowitsch } else { 81699566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 817098921bdaSJacob Faibussowitsch } 817198921bdaSJacob Faibussowitsch } 817298921bdaSJacob Faibussowitsch } 81739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 817598921bdaSJacob Faibussowitsch } 817698921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 817798921bdaSJacob Faibussowitsch } 817872833a62Smarkadams4 817998921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 818098921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 818198921bdaSJacob Faibussowitsch * original definitions */ 81829566063dSJacob Faibussowitsch #undef PetscCall 818398921bdaSJacob Faibussowitsch #undef SETERRQ 8184