1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 10674b392bSAlexander #define TYPE AIJ 11674b392bSAlexander #define TYPE_AIJ 12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h" 13674b392bSAlexander #undef TYPE 14674b392bSAlexander #undef TYPE_AIJ 15674b392bSAlexander 16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat) 1726cec326SBarry Smith { 1826cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1926cec326SBarry Smith 2026cec326SBarry Smith PetscFunctionBegin; 2126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 2226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 2326cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 2426cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 2526cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2826cec326SBarry Smith #else 2926cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 3026cec326SBarry Smith #endif 3126cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 3226cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 3326cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 3426cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 3526cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 36674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 37674b392bSAlexander } 38674b392bSAlexander 39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat) 40674b392bSAlexander { 41674b392bSAlexander Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 42674b392bSAlexander /* Save the nonzero states of the component matrices because those are what are used to determine 43674b392bSAlexander the nonzero state of mat */ 44674b392bSAlexander PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate; 45674b392bSAlexander 46674b392bSAlexander PetscFunctionBegin; 47674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 48674b392bSAlexander PetscCall(MatSetUp_MPI_Hash(mat)); 49674b392bSAlexander aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate; 50674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 51674b392bSAlexander } 52674b392bSAlexander 53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 54674b392bSAlexander { 55674b392bSAlexander PetscFunctionBegin; 56674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 5726cec326SBarry Smith 5826cec326SBarry Smith PetscCall(PetscFree(mat->data)); 5926cec326SBarry Smith 6026cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 6126cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 6226cec326SBarry Smith 6326cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 6426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 69674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 7126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 7326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 7626cec326SBarry Smith #endif 7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 7926cec326SBarry Smith #endif 8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 8126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 8226cec326SBarry Smith #endif 8326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 8526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 8626cec326SBarry Smith #endif 8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 8826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 8926cec326SBarry Smith #endif 9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 9126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 9226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 9326cec326SBarry Smith #endif 9426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 9526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 9626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 9726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 9826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 9926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 10126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 10226cec326SBarry Smith #endif 10326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 10426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 10526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 10626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 10726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 10826cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 10926cec326SBarry Smith } 11026cec326SBarry Smith 111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 112d71ae5a4SJacob Faibussowitsch { 1138a9c020eSBarry Smith Mat B; 1148a9c020eSBarry Smith 1158a9c020eSBarry Smith PetscFunctionBegin; 1168a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 1178a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 1188a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 119501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 1203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1218a9c020eSBarry Smith } 1228a9c020eSBarry Smith 123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 124d71ae5a4SJacob Faibussowitsch { 1258a9c020eSBarry Smith Mat B; 1268a9c020eSBarry Smith 1278a9c020eSBarry Smith PetscFunctionBegin; 1288a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1298a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 130501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1328a9c020eSBarry Smith } 1338a9c020eSBarry Smith 13401bebe75SBarry Smith /*MC 13501bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 13601bebe75SBarry Smith 13711a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 13811a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 13911a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 14001bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14101bebe75SBarry Smith the above preallocation routines for simplicity. 14201bebe75SBarry Smith 14327430b45SBarry Smith Options Database Key: 14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 14501bebe75SBarry Smith 14611a5261eSBarry Smith Developer Note: 1472ef1f0ffSBarry Smith Level: beginner 1482ef1f0ffSBarry Smith 14911a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 15001bebe75SBarry Smith enough exist. 15101bebe75SBarry Smith 1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 15301bebe75SBarry Smith M*/ 15401bebe75SBarry Smith 15501bebe75SBarry Smith /*MC 15601bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 15701bebe75SBarry Smith 15811a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 15911a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 16011a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 16101bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 16201bebe75SBarry Smith the above preallocation routines for simplicity. 16301bebe75SBarry Smith 16427430b45SBarry Smith Options Database Key: 16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 16601bebe75SBarry Smith 16701bebe75SBarry Smith Level: beginner 16801bebe75SBarry Smith 1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 17001bebe75SBarry Smith M*/ 17101bebe75SBarry Smith 172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 173d71ae5a4SJacob Faibussowitsch { 174f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 175f74ef234SStefano Zampini 176f74ef234SStefano Zampini PetscFunctionBegin; 177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 178b470e4b4SRichard Tran Mills A->boundtocpu = flg; 179f74ef234SStefano Zampini #endif 1801baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1811baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1823120d049SRichard Tran Mills 1833120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1843120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1853120d049SRichard Tran Mills * to differ from the parent matrix. */ 1861baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1871baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189f74ef234SStefano Zampini } 190f74ef234SStefano Zampini 191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 192d71ae5a4SJacob Faibussowitsch { 19326bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 19426bda2c4Sstefano_zampini 19526bda2c4Sstefano_zampini PetscFunctionBegin; 19646533700Sstefano_zampini if (mat->A) { 1979566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1989566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 19946533700Sstefano_zampini } 2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20126bda2c4Sstefano_zampini } 20226bda2c4Sstefano_zampini 203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 204d71ae5a4SJacob Faibussowitsch { 20527d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 20627d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 20727d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 20827d4218bSShri Abhyankar const PetscInt *ia, *ib; 209ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 21027d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 21127d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 21227d4218bSShri Abhyankar 21327d4218bSShri Abhyankar PetscFunctionBegin; 214f4259b30SLisandro Dalcin *keptrows = NULL; 215ce496241SStefano Zampini 21627d4218bSShri Abhyankar ia = a->i; 21727d4218bSShri Abhyankar ib = b->i; 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 22027d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22127d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22227d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22327d4218bSShri Abhyankar if (!na && !nb) { 22427d4218bSShri Abhyankar cnt++; 22527d4218bSShri Abhyankar goto ok1; 22627d4218bSShri Abhyankar } 227ce496241SStefano Zampini aa = aav + ia[i]; 22827d4218bSShri Abhyankar for (j = 0; j < na; j++) { 22927d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 23027d4218bSShri Abhyankar } 2318e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23227d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23327d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar cnt++; 23627d4218bSShri Abhyankar ok1:; 23727d4218bSShri Abhyankar } 238462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 239ce496241SStefano Zampini if (!n0rows) { 2409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243ce496241SStefano Zampini } 2449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 24527d4218bSShri Abhyankar cnt = 0; 24627d4218bSShri Abhyankar for (i = 0; i < m; i++) { 24727d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 24827d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 24927d4218bSShri Abhyankar if (!na && !nb) continue; 250ce496241SStefano Zampini aa = aav + ia[i]; 25127d4218bSShri Abhyankar for (j = 0; j < na; j++) { 25227d4218bSShri Abhyankar if (aa[j] != 0.0) { 25327d4218bSShri Abhyankar rows[cnt++] = rstart + i; 25427d4218bSShri Abhyankar goto ok2; 25527d4218bSShri Abhyankar } 25627d4218bSShri Abhyankar } 2578e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 25827d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 25927d4218bSShri Abhyankar if (bb[j] != 0.0) { 26027d4218bSShri Abhyankar rows[cnt++] = rstart + i; 26127d4218bSShri Abhyankar goto ok2; 26227d4218bSShri Abhyankar } 26327d4218bSShri Abhyankar } 26427d4218bSShri Abhyankar ok2:; 26527d4218bSShri Abhyankar } 2669566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27027d4218bSShri Abhyankar } 27127d4218bSShri Abhyankar 272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 273d71ae5a4SJacob Faibussowitsch { 27499e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 27594342113SStefano Zampini PetscBool cong; 27699e65526SBarry Smith 27799e65526SBarry Smith PetscFunctionBegin; 2789566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 27994342113SStefano Zampini if (Y->assembled && cong) { 2809566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 28199e65526SBarry Smith } else { 2829566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 28399e65526SBarry Smith } 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28599e65526SBarry Smith } 28699e65526SBarry Smith 287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 288d71ae5a4SJacob Faibussowitsch { 289f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 290f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 291f1f41ecbSJed Brown 292f1f41ecbSJed Brown PetscFunctionBegin; 2930298fd71SBarry Smith *zrows = NULL; 2949566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2959566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 296f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299f1f41ecbSJed Brown } 300f1f41ecbSJed Brown 301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 302d71ae5a4SJacob Faibussowitsch { 3030716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 304a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 3050716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 3060716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 3070716a85fSBarry Smith PetscReal *work; 308ce496241SStefano Zampini const PetscScalar *dummy; 3090716a85fSBarry Smith 3100716a85fSBarry Smith PetscFunctionBegin; 3119566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 3129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 3139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 3149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 3159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 3169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 319ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 320857cbf51SRichard Tran Mills } else if (type == NORM_1) { 321ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 322ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 323857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 324ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 325ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 326857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 327ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 328ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 329857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 330ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 331ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 332857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 333857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 334e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3350716a85fSBarry Smith } else { 336e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3370716a85fSBarry Smith } 3389566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 339857cbf51SRichard Tran Mills if (type == NORM_2) { 340a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 341857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 342a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3430716a85fSBarry Smith } 3443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3450716a85fSBarry Smith } 3460716a85fSBarry Smith 347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 348d71ae5a4SJacob Faibussowitsch { 349e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 350e52d2c62SBarry Smith IS sis, gis; 351e52d2c62SBarry Smith const PetscInt *isis, *igis; 352e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 353e52d2c62SBarry Smith 354e52d2c62SBarry Smith PetscFunctionBegin; 3559566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3569566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3579566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3589566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 361e52d2c62SBarry Smith 3629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3639566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 365e52d2c62SBarry Smith n = ngis + nsis; 3669566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3679566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 368e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 370e52d2c62SBarry Smith 3719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3729566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376e52d2c62SBarry Smith } 377e52d2c62SBarry Smith 378dd6ea824SBarry Smith /* 3790f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3810f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 38372fa4726SStefano Zampini has an order N integer array but is fast to access. 3849e25ed09SBarry Smith */ 385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 386d71ae5a4SJacob Faibussowitsch { 38744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 388d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 389dbb450caSBarry Smith 3903a40ed3dSBarry Smith PetscFunctionBegin; 39108401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 393eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 394c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 395b1fc9764SSatish Balay #else 3969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 397905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 398b1fc9764SSatish Balay #endif 3993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4009e25ed09SBarry Smith } 4019e25ed09SBarry Smith 402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 403a8f51744SPierre Jolivet do { \ 404db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 405db4deed7SKarl Rupp else high1 = nrow1; \ 406fd3458f5SBarry Smith lastcol1 = col; \ 407fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 408fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 409fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 410fd3458f5SBarry Smith else low1 = t; \ 411ba4e3ef2SSatish Balay } \ 412fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 413fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 414fd3458f5SBarry Smith if (rp1[_i] == col) { \ 4150c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4160c0d7e18SFande Kong ap1[_i] += value; \ 4170c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 4180c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4199371c9d4SSatish Balay } else ap1[_i] = value; \ 42030770e4dSSatish Balay goto a_noinsert; \ 4210520107fSSatish Balay } \ 4220520107fSSatish Balay } \ 4239371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4249371c9d4SSatish Balay low1 = 0; \ 4259371c9d4SSatish Balay high1 = nrow1; \ 4269371c9d4SSatish Balay goto a_noinsert; \ 4279371c9d4SSatish Balay } \ 4289371c9d4SSatish Balay if (nonew == 1) { \ 4299371c9d4SSatish Balay low1 = 0; \ 4309371c9d4SSatish Balay high1 = nrow1; \ 4319371c9d4SSatish Balay goto a_noinsert; \ 4329371c9d4SSatish Balay } \ 43308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 434fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4359371c9d4SSatish Balay N = nrow1++ - 1; \ 4369371c9d4SSatish Balay a->nz++; \ 4379371c9d4SSatish Balay high1++; \ 4380520107fSSatish Balay /* shift up all the later entries in this row */ \ 4399566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4409566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 441fd3458f5SBarry Smith rp1[_i] = col; \ 442fd3458f5SBarry Smith ap1[_i] = value; \ 44330770e4dSSatish Balay a_noinsert:; \ 444fd3458f5SBarry Smith ailen[row] = nrow1; \ 445a8f51744SPierre Jolivet } while (0) 4460a198c4cSBarry Smith 447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 448a8f51744SPierre Jolivet do { \ 449db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 450db4deed7SKarl Rupp else high2 = nrow2; \ 451fd3458f5SBarry Smith lastcol2 = col; \ 452fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 453fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 454fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 455fd3458f5SBarry Smith else low2 = t; \ 456ba4e3ef2SSatish Balay } \ 457fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 458fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 459fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4600c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4610c0d7e18SFande Kong ap2[_i] += value; \ 4620c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4639371c9d4SSatish Balay } else ap2[_i] = value; \ 46430770e4dSSatish Balay goto b_noinsert; \ 46530770e4dSSatish Balay } \ 46630770e4dSSatish Balay } \ 4679371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4689371c9d4SSatish Balay low2 = 0; \ 4699371c9d4SSatish Balay high2 = nrow2; \ 4709371c9d4SSatish Balay goto b_noinsert; \ 4719371c9d4SSatish Balay } \ 4729371c9d4SSatish Balay if (nonew == 1) { \ 4739371c9d4SSatish Balay low2 = 0; \ 4749371c9d4SSatish Balay high2 = nrow2; \ 4759371c9d4SSatish Balay goto b_noinsert; \ 4769371c9d4SSatish Balay } \ 47708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 478fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4799371c9d4SSatish Balay N = nrow2++ - 1; \ 4809371c9d4SSatish Balay b->nz++; \ 4819371c9d4SSatish Balay high2++; \ 48230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4839566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4849566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 485fd3458f5SBarry Smith rp2[_i] = col; \ 486fd3458f5SBarry Smith ap2[_i] = value; \ 48730770e4dSSatish Balay b_noinsert:; \ 488fd3458f5SBarry Smith bilen[row] = nrow2; \ 489a8f51744SPierre Jolivet } while (0) 49030770e4dSSatish Balay 491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 492d71ae5a4SJacob Faibussowitsch { 4932fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4942fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4952fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 496fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4972fd7e33dSBarry Smith 4982fd7e33dSBarry Smith PetscFunctionBegin; 4992fd7e33dSBarry Smith /* code only works for square matrices A */ 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 5029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 5032fd7e33dSBarry Smith row = row - diag; 5042fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 5052fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 5062fd7e33dSBarry Smith } 507fff043a9SJunchao Zhang if (l) { 5089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 5109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 511fff043a9SJunchao Zhang } 5122fd7e33dSBarry Smith 5132fd7e33dSBarry Smith /* diagonal part */ 514fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 5159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 51657508eceSPierre Jolivet PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row])); 5179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 518fff043a9SJunchao Zhang } 5192fd7e33dSBarry Smith 5202fd7e33dSBarry Smith /* right of diagonal part */ 521fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 525fff043a9SJunchao Zhang } 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5272fd7e33dSBarry Smith } 5282fd7e33dSBarry Smith 529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 530d71ae5a4SJacob Faibussowitsch { 53144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 532071fcb05SBarry Smith PetscScalar value = 0.0; 533d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 534d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 535ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5368a729477SBarry Smith 5370520107fSSatish Balay /* Some Variables required in the macro */ 5384ee7247eSSatish Balay Mat A = aij->A; 5394ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 54057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 541ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 54230770e4dSSatish Balay Mat B = aij->B; 54330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 544d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 545ce496241SStefano Zampini MatScalar *aa, *ba; 546fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5478d76821aSHong Zhang PetscInt nonew; 548a77337e4SBarry Smith MatScalar *ap1, *ap2; 5494ee7247eSSatish Balay 5503a40ed3dSBarry Smith PetscFunctionBegin; 5519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5538a729477SBarry Smith for (i = 0; i < m; i++) { 5545ef9f2a5SBarry Smith if (im[i] < 0) continue; 55508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5564b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5574b0e389bSBarry Smith row = im[i] - rstart; 558fd3458f5SBarry Smith lastcol1 = -1; 5598e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5608e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 561fd3458f5SBarry Smith rmax1 = aimax[row]; 562fd3458f5SBarry Smith nrow1 = ailen[row]; 563fd3458f5SBarry Smith low1 = 0; 564fd3458f5SBarry Smith high1 = nrow1; 565fd3458f5SBarry Smith lastcol2 = -1; 5668e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5678e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 568fd3458f5SBarry Smith rmax2 = bimax[row]; 569d498b1e9SBarry Smith nrow2 = bilen[row]; 570fd3458f5SBarry Smith low2 = 0; 571fd3458f5SBarry Smith high2 = nrow2; 572fd3458f5SBarry Smith 5731eb62cbbSBarry Smith for (j = 0; j < n; j++) { 574071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 575c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 576fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 577fd3458f5SBarry Smith col = in[j] - cstart; 5788d76821aSHong Zhang nonew = a->nonew; 579d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 580f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 581f7d195e4SLawrence Mitchell continue; 582f7d195e4SLawrence Mitchell } else { 583f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 584227d817aSBarry Smith if (mat->was_assembled) { 58548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 587eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 588fa46199cSSatish Balay col--; 589b1fc9764SSatish Balay #else 590905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 591b1fc9764SSatish Balay #endif 592f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 593eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); /* Change aij->B from reduced/local format to expanded/global format */ 5944b0e389bSBarry Smith col = in[j]; 5959bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 596f9508a3cSSatish Balay B = aij->B; 597f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5989371c9d4SSatish Balay bimax = b->imax; 5999371c9d4SSatish Balay bi = b->i; 6009371c9d4SSatish Balay bilen = b->ilen; 6019371c9d4SSatish Balay bj = b->j; 6029371c9d4SSatish Balay ba = b->a; 603cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 604cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 605d498b1e9SBarry Smith rmax2 = bimax[row]; 606d498b1e9SBarry Smith nrow2 = bilen[row]; 607d498b1e9SBarry Smith low2 = 0; 608d498b1e9SBarry Smith high2 = nrow2; 609d0f46423SBarry Smith bm = aij->B->rmap->n; 610f9508a3cSSatish Balay ba = b->a; 611d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 612f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 6139566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 61498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 6150587a0fcSBarry Smith } 616c48de900SBarry Smith } else col = in[j]; 6178d76821aSHong Zhang nonew = b->nonew; 618d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6191eb62cbbSBarry Smith } 6201eb62cbbSBarry Smith } 6215ef9f2a5SBarry Smith } else { 62228b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 62390f02eecSBarry Smith if (!aij->donotstash) { 6245080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 625d36fbae8SSatish Balay if (roworiented) { 6268e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 627d36fbae8SSatish Balay } else { 6288e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6294b0e389bSBarry Smith } 6301eb62cbbSBarry Smith } 6318a729477SBarry Smith } 63290f02eecSBarry Smith } 6335519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6368a729477SBarry Smith } 6378a729477SBarry Smith 6382b08fdbeSandi selinger /* 639904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6402b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 641904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6422b08fdbeSandi selinger */ 643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 644d71ae5a4SJacob Faibussowitsch { 645904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 646904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6474cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 648904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 649904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 650904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 651904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 652904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6536dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 654904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 655904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 656904d1e70Sandi selinger 657904d1e70Sandi selinger PetscFunctionBegin; 658904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 659904d1e70Sandi selinger for (j = 0; j < am; j++) { 660904d1e70Sandi selinger dnz = onz = 0; 661904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6626dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 663904d1e70Sandi selinger /* If column is in the diagonal */ 664904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 665904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 666904d1e70Sandi selinger dnz++; 667904d1e70Sandi selinger } else { /* off-diagonal entries */ 668904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 669904d1e70Sandi selinger onz++; 670904d1e70Sandi selinger } 671904d1e70Sandi selinger } 672904d1e70Sandi selinger ailen[j] = dnz; 673904d1e70Sandi selinger bilen[j] = onz; 674904d1e70Sandi selinger } 6753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 676904d1e70Sandi selinger } 677904d1e70Sandi selinger 678904d1e70Sandi selinger /* 679904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 680904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6811de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6821de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6831de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 684904d1e70Sandi selinger */ 685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 686d71ae5a4SJacob Faibussowitsch { 6873a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6883a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6894cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 690f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6913a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6923a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6933a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6943a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6953a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6966dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6971de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 698904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 699904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 7003a063d27Sandi selinger 7013a063d27Sandi selinger PetscFunctionBegin; 7023a063d27Sandi selinger /* Iterate over all rows of the matrix */ 7033a063d27Sandi selinger for (j = 0; j < am; j++) { 704904d1e70Sandi selinger dnz_row = onz_row = 0; 705904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 706904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 707e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 708e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 709ae8e66a0Sandi selinger /* If column is in the diagonal */ 7103a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 711904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 712904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 713904d1e70Sandi selinger dnz_row++; 714ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 715904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 716904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 717904d1e70Sandi selinger onz_row++; 7183a063d27Sandi selinger } 7193a063d27Sandi selinger } 720904d1e70Sandi selinger ailen[j] = dnz_row; 721904d1e70Sandi selinger bilen[j] = onz_row; 7223a063d27Sandi selinger } 7233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7243a063d27Sandi selinger } 7253a063d27Sandi selinger 726ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 727d71ae5a4SJacob Faibussowitsch { 728b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 729d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 730d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 731b49de8d1SLois Curfman McInnes 7323a40ed3dSBarry Smith PetscFunctionBegin; 733b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 73454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 73554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 73685835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 737b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 738b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 73954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 74054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 741b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 742b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7439566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 744fa852ad4SSatish Balay } else { 74548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 746aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 747eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 748fa46199cSSatish Balay col--; 749b1fc9764SSatish Balay #else 750905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 751b1fc9764SSatish Balay #endif 752e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 75348a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 754b49de8d1SLois Curfman McInnes } 755b49de8d1SLois Curfman McInnes } 756b49de8d1SLois Curfman McInnes } 7573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 758b49de8d1SLois Curfman McInnes } 759bc5ccf88SSatish Balay 760ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 761d71ae5a4SJacob Faibussowitsch { 762bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 763b1d57f15SBarry Smith PetscInt nstash, reallocs; 764bc5ccf88SSatish Balay 765bc5ccf88SSatish Balay PetscFunctionBegin; 7663ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 767bc5ccf88SSatish Balay 7689566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7699566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7709566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772bc5ccf88SSatish Balay } 773bc5ccf88SSatish Balay 774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 775d71ae5a4SJacob Faibussowitsch { 776bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 777b1d57f15SBarry Smith PetscMPIInt n; 778b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 779e44c0bd4SBarry Smith PetscInt *row, *col; 780ace3abfcSBarry Smith PetscBool other_disassembled; 78187828ca2SBarry Smith PetscScalar *val; 782bc5ccf88SSatish Balay 78391c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7846e111a19SKarl Rupp 785bc5ccf88SSatish Balay PetscFunctionBegin; 7864cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 787a2d1c673SSatish Balay while (1) { 7889566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 789a2d1c673SSatish Balay if (!flg) break; 790a2d1c673SSatish Balay 791bc5ccf88SSatish Balay for (i = 0; i < n;) { 792bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7932205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7942205254eSKarl Rupp if (row[j] != rstart) break; 7952205254eSKarl Rupp } 796bc5ccf88SSatish Balay if (j < n) ncols = j - i; 797bc5ccf88SSatish Balay else ncols = n - i; 798bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7999566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 800bc5ccf88SSatish Balay i = j; 801bc5ccf88SSatish Balay } 802bc5ccf88SSatish Balay } 8039566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 804bc5ccf88SSatish Balay } 8058c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 806c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 8079ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 8089ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 8099566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 8109566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 8119ecce9b1SRichard Tran Mills } 812e2cf4d64SStefano Zampini #endif 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 815bc5ccf88SSatish Balay 816bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 817071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 818bc5ccf88SSatish Balay /* 819bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 820bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 821bc5ccf88SSatish Balay */ 822bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 823462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 82435cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 825eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 826ad59fb31SSatish Balay } 827ad59fb31SSatish Balay } 82848a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8299566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8308c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 831c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 832e2cf4d64SStefano Zampini #endif 8339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 835bc5ccf88SSatish Balay 8369566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8372205254eSKarl Rupp 838f4259b30SLisandro Dalcin aij->rowvalues = NULL; 839a30b2313SHong Zhang 8409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 841e56f5c9eSBarry Smith 8424f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 843f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 844e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 845462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 846e56f5c9eSBarry Smith } 8478c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 848c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 849e2cf4d64SStefano Zampini #endif 8503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 851bc5ccf88SSatish Balay } 852bc5ccf88SSatish Balay 853ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 854d71ae5a4SJacob Faibussowitsch { 85544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8563a40ed3dSBarry Smith 8573a40ed3dSBarry Smith PetscFunctionBegin; 8589566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8599566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8611eb62cbbSBarry Smith } 8621eb62cbbSBarry Smith 863ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 864d71ae5a4SJacob Faibussowitsch { 8651b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8661b1dd7adSMatthew G. Knepley PetscInt *lrows; 8676e520ac8SStefano Zampini PetscInt r, len; 8689939a2d1SBarry Smith PetscBool cong; 8691eb62cbbSBarry Smith 8703a40ed3dSBarry Smith PetscFunctionBegin; 8716e520ac8SStefano Zampini /* get locally owned rows */ 8729566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8739566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 874dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 87597b48c8fSBarry Smith if (x && b) { 8761b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8771b1dd7adSMatthew G. Knepley PetscScalar *bb; 8781b1dd7adSMatthew G. Knepley 87928b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8809566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8819566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8821b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 88597b48c8fSBarry Smith } 886a92ad425SStefano Zampini 887a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8889566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8899566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 890a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 891a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 892a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 893a92ad425SStefano Zampini PetscInt nnwA, nnwB; 894a92ad425SStefano Zampini PetscBool nnzA, nnzB; 895a92ad425SStefano Zampini 896a92ad425SStefano Zampini nnwA = aijA->nonew; 897a92ad425SStefano Zampini nnwB = aijB->nonew; 898a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 899a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 900a92ad425SStefano Zampini if (!nnzA) { 9019566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 902a92ad425SStefano Zampini aijA->nonew = 0; 903a92ad425SStefano Zampini } 904a92ad425SStefano Zampini if (!nnzB) { 9059566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 906a92ad425SStefano Zampini aijB->nonew = 0; 907a92ad425SStefano Zampini } 908a92ad425SStefano Zampini /* Must zero here before the next loop */ 9099566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9109566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9111b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 9121b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 913a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 9149566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 915e2d53e46SBarry Smith } 916a92ad425SStefano Zampini aijA->nonew = nnwA; 917a92ad425SStefano Zampini aijB->nonew = nnwB; 9186eb55b6aSBarry Smith } else { 9199566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9209566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9216eb55b6aSBarry Smith } 9229566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9254f9cfa9eSBarry Smith 9269939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 927f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9289939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 929462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9309939a2d1SBarry Smith } 9313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9321eb62cbbSBarry Smith } 9331eb62cbbSBarry Smith 934ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 935d71ae5a4SJacob Faibussowitsch { 9369c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9376497c311SBarry Smith PetscInt n = A->rmap->n; 938131c27b5Sprj- PetscInt i, j, r, m, len = 0; 93954bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 940131c27b5Sprj- PetscMPIInt p = 0; 94154bd4135SMatthew G. Knepley PetscSFNode *rrows; 94254bd4135SMatthew G. Knepley PetscSF sf; 9439c7c4993SBarry Smith const PetscScalar *xx; 944fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 945564f14d6SBarry Smith Vec xmask, lmask; 946564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 947564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 948564f14d6SBarry Smith PetscScalar *aa; 9499c7c4993SBarry Smith 9509c7c4993SBarry Smith PetscFunctionBegin; 95154bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 95354bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 95554bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 95654bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 957aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9585ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9599566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9605ba17502SJed Brown } 96154bd4135SMatthew G. Knepley rrows[r].rank = p; 96254bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9639c7c4993SBarry Smith } 9649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 96654bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9679566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9689566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9699566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 97054bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9719371c9d4SSatish Balay for (r = 0; r < n; ++r) 9729371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 973564f14d6SBarry Smith /* zero diagonal part of matrix */ 9749566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9754cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9769566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9779566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9789566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 97954bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 984a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 985a92ad425SStefano Zampini PetscBool cong; 986a92ad425SStefano Zampini 9879566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 98828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9909566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9929566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 993377aa5a1SBarry Smith } 9949566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9954cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 997564f14d6SBarry Smith ii = aij->i; 9988e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 999564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 1000564f14d6SBarry Smith if (aij->compressedrow.use) { 1001564f14d6SBarry Smith m = aij->compressedrow.nrows; 1002564f14d6SBarry Smith ii = aij->compressedrow.i; 1003564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 1004564f14d6SBarry Smith for (i = 0; i < m; i++) { 1005564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1006564f14d6SBarry Smith aj = aij->j + ii[i]; 1007fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1008564f14d6SBarry Smith 1009564f14d6SBarry Smith for (j = 0; j < n; j++) { 101025266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1011377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 1012564f14d6SBarry Smith *aa = 0.0; 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith aa++; 1015564f14d6SBarry Smith aj++; 1016564f14d6SBarry Smith } 1017564f14d6SBarry Smith ridx++; 1018564f14d6SBarry Smith } 1019564f14d6SBarry Smith } else { /* do not use compressed row format */ 1020564f14d6SBarry Smith m = l->B->rmap->n; 1021564f14d6SBarry Smith for (i = 0; i < m; i++) { 1022564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1023564f14d6SBarry Smith aj = aij->j + ii[i]; 1024fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1025564f14d6SBarry Smith for (j = 0; j < n; j++) { 102625266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1027377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1028564f14d6SBarry Smith *aa = 0.0; 1029564f14d6SBarry Smith } 1030564f14d6SBarry Smith aa++; 1031564f14d6SBarry Smith aj++; 1032564f14d6SBarry Smith } 1033564f14d6SBarry Smith } 1034564f14d6SBarry Smith } 1035a92ad425SStefano Zampini if (x && b) { 10369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1038377aa5a1SBarry Smith } 10399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10429566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10434f9cfa9eSBarry Smith 10444f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1045f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10464f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1047462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10484f9cfa9eSBarry Smith } 10493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10509c7c4993SBarry Smith } 10519c7c4993SBarry Smith 1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1053d71ae5a4SJacob Faibussowitsch { 1054416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1055b1d57f15SBarry Smith PetscInt nt; 105619b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1057416022c9SBarry Smith 10583a40ed3dSBarry Smith PetscFunctionBegin; 10599566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 106008401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1062296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1064296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10661eb62cbbSBarry Smith } 10671eb62cbbSBarry Smith 1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1069d71ae5a4SJacob Faibussowitsch { 1070bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1071bd0c2dcbSBarry Smith 1072bd0c2dcbSBarry Smith PetscFunctionBegin; 10739566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1075bd0c2dcbSBarry Smith } 1076bd0c2dcbSBarry Smith 1077ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1078d71ae5a4SJacob Faibussowitsch { 1079416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 108001ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10813a40ed3dSBarry Smith 10823a40ed3dSBarry Smith PetscFunctionBegin; 10839566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10849566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10859566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10869566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1088da3a660dSBarry Smith } 1089da3a660dSBarry Smith 1090ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1091d71ae5a4SJacob Faibussowitsch { 1092416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1093da3a660dSBarry Smith 10943a40ed3dSBarry Smith PetscFunctionBegin; 1095da3a660dSBarry Smith /* do nondiagonal part */ 10969566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1097da3a660dSBarry Smith /* do local part */ 10989566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10999613dc34SJunchao Zhang /* add partial results together */ 11009566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1103da3a660dSBarry Smith } 1104da3a660dSBarry Smith 1105ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1106d71ae5a4SJacob Faibussowitsch { 11074f423910Svictorle MPI_Comm comm; 1108ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1109ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1110cd0d46ebSvictorle IS Me, Notme; 1111b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 111254d735aeSStefano Zampini PetscBool lf; 1113b1d57f15SBarry Smith PetscMPIInt size; 1114cd0d46ebSvictorle 1115cd0d46ebSvictorle PetscFunctionBegin; 111642e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 11179566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 1118462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11193ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11223ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 112342e5f5b4Svictorle 11247dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11259566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11269566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1128cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1129cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11309566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11319566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11329566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 113366501d38Svictorle Aoff = Aoffs[0]; 11349566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 113566501d38Svictorle Boff = Boffs[0]; 11369566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11379566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11389566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11419566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1143cd0d46ebSvictorle } 1144cd0d46ebSvictorle 1145ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1146d71ae5a4SJacob Faibussowitsch { 1147416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1148da3a660dSBarry Smith 11493a40ed3dSBarry Smith PetscFunctionBegin; 1150da3a660dSBarry Smith /* do nondiagonal part */ 11519566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1152da3a660dSBarry Smith /* do local part */ 11539566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11549613dc34SJunchao Zhang /* add partial results together */ 11559566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11569566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1158da3a660dSBarry Smith } 1159da3a660dSBarry Smith 11601eb62cbbSBarry Smith /* 11611eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11621eb62cbbSBarry Smith diagonal block 11631eb62cbbSBarry Smith */ 1164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1165d71ae5a4SJacob Faibussowitsch { 1166416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11673a40ed3dSBarry Smith 11683a40ed3dSBarry Smith PetscFunctionBegin; 116908401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1170aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11719566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11731eb62cbbSBarry Smith } 11741eb62cbbSBarry Smith 1175ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1176d71ae5a4SJacob Faibussowitsch { 1177052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11783a40ed3dSBarry Smith 11793a40ed3dSBarry Smith PetscFunctionBegin; 11809566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11819566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1183052efed2SBarry Smith } 1184052efed2SBarry Smith 1185ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1186d71ae5a4SJacob Faibussowitsch { 11878e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11888e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11898e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11903ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11912e5835c6SStefano Zampini const PetscScalar *aa, *ba; 119217a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 119317a3732bSBarry Smith PetscInt64 nz, hnz; 11943ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11953ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11963ea6fe3dSLisandro Dalcin PetscScalar *matvals; 119717a3732bSBarry Smith PetscMPIInt rank; 11988e2fed03SBarry Smith 11998e2fed03SBarry Smith PetscFunctionBegin; 12009566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 12013ea6fe3dSLisandro Dalcin 12023ea6fe3dSLisandro Dalcin M = mat->rmap->N; 12033ea6fe3dSLisandro Dalcin N = mat->cmap->N; 12043ea6fe3dSLisandro Dalcin m = mat->rmap->n; 12053ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 12063ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 12078e2fed03SBarry Smith nz = A->nz + B->nz; 12083ea6fe3dSLisandro Dalcin 12093ea6fe3dSLisandro Dalcin /* write matrix header */ 12100700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 12119371c9d4SSatish Balay header[1] = M; 12129371c9d4SSatish Balay header[2] = N; 121317a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 121417a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 1215835f2295SStefano Zampini if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12178e2fed03SBarry Smith 12183ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12203ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12219566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12229566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12238e2fed03SBarry Smith 12243ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12263ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12273ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12283ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12293ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12308e2fed03SBarry Smith } 12319371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12329371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12338e2fed03SBarry Smith } 123417a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12369566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12378e2fed03SBarry Smith 12383ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12423ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12433ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12443ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12452e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12468e2fed03SBarry Smith } 12479371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12489371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12498e2fed03SBarry Smith } 12509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 125217a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12539566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12549566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12558e2fed03SBarry Smith 12563ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12579566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12598e2fed03SBarry Smith } 12608e2fed03SBarry Smith 12619804daf3SBarry Smith #include <petscdraw.h> 1262ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1263d71ae5a4SJacob Faibussowitsch { 126444a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 126532dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1266ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1267b0a32e0cSBarry Smith PetscViewer sviewer; 1268f3ef73ceSBarry Smith PetscViewerFormat format; 1269416022c9SBarry Smith 12703a40ed3dSBarry Smith PetscFunctionBegin; 12719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 127432077d6dSBarry Smith if (iascii) { 12759566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1276ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 12771690c2aeSBarry Smith PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1280835f2295SStefano Zampini for (i = 0; i < size; i++) { 1281ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1282ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1283ef5fdb51SBarry Smith navg += nz[i]; 1284ef5fdb51SBarry Smith } 12859566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1286ef5fdb51SBarry Smith navg = navg / size; 12879566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1289ef5fdb51SBarry Smith } 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1291456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12924e220ebcSLois Curfman McInnes MatInfo info; 12936335e310SSatish Balay PetscInt *inodes = NULL; 1294923f20ffSKris Buschelman 12959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12969566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12979566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1299923f20ffSKris Buschelman if (!inodes) { 13009371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1301835f2295SStefano Zampini info.memory)); 13026831982aSBarry Smith } else { 1303835f2295SStefano Zampini PetscCall( 1304835f2295SStefano Zampini PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory)); 13056831982aSBarry Smith } 13069566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 13079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13089566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13109566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13139566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1315fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1316923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13179566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1318923f20ffSKris Buschelman if (inodes) { 13199566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1320d38fa0fbSBarry Smith } else { 13219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1322d38fa0fbSBarry Smith } 13233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13244aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132608480c60SBarry Smith } 13278e2fed03SBarry Smith } else if (isbinary) { 13288e2fed03SBarry Smith if (size == 1) { 13299566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13309566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13318e2fed03SBarry Smith } else { 13329566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13338e2fed03SBarry Smith } 13343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 133571e56450SStefano Zampini } else if (iascii && size == 1) { 13369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13379566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13390f5bd95cSBarry Smith } else if (isdraw) { 1340b0a32e0cSBarry Smith PetscDraw draw; 1341ace3abfcSBarry Smith PetscBool isnull; 13429566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13439566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13443ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 134519bcc07fSBarry Smith } 134619bcc07fSBarry Smith 134771e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 134871e56450SStefano Zampini Mat A = NULL, Av; 134971e56450SStefano Zampini IS isrow, iscol; 13502ee70a88SLois Curfman McInnes 13519566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13529566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13539566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13549566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 135571e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 135671e56450SStefano Zampini /* 135771e56450SStefano Zampini Mat *AA, A = NULL, Av; 135871e56450SStefano Zampini IS isrow,iscol; 135971e56450SStefano Zampini 13609566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13619566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13629566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1363dd400576SPatrick Sanan if (rank == 0) { 13649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 136571e56450SStefano Zampini A = AA[0]; 136671e56450SStefano Zampini Av = AA[0]; 136795373324SBarry Smith } 13689566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136971e56450SStefano Zampini */ 13709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 137255843e3eSBarry Smith /* 137355843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1374b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 137555843e3eSBarry Smith */ 13769566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1377dd400576SPatrick Sanan if (rank == 0) { 137848a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13799566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 138095373324SBarry Smith } 13819566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 138395373324SBarry Smith } 13843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13851eb62cbbSBarry Smith } 13861eb62cbbSBarry Smith 1387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1388d71ae5a4SJacob Faibussowitsch { 1389ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1390416022c9SBarry Smith 13913a40ed3dSBarry Smith PetscFunctionBegin; 13929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13959566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 139648a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1398416022c9SBarry Smith } 1399416022c9SBarry Smith 1400ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1401d71ae5a4SJacob Faibussowitsch { 140244a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1403f4259b30SLisandro Dalcin Vec bb1 = NULL; 1404ace3abfcSBarry Smith PetscBool hasop; 14058a729477SBarry Smith 14063a40ed3dSBarry Smith PetscFunctionBegin; 1407a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 14089566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1410a2b30743SBarry Smith } 1411a2b30743SBarry Smith 141248a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14134e980039SJed Brown 1414c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1415da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14172798e883SHong Zhang its--; 1418da3a660dSBarry Smith } 14192798e883SHong Zhang 14202798e883SHong Zhang while (its--) { 14219566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14229566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14232798e883SHong Zhang 1424c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14259566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14269566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14272798e883SHong Zhang 1428c14dc6b6SHong Zhang /* local sweep */ 14299566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14302798e883SHong Zhang } 14313a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1432da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14339566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14342798e883SHong Zhang its--; 1435da3a660dSBarry Smith } 14362798e883SHong Zhang while (its--) { 14379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14389566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14392798e883SHong Zhang 1440c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14419566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14429566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1443c14dc6b6SHong Zhang 1444c14dc6b6SHong Zhang /* local sweep */ 14459566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14462798e883SHong Zhang } 14473a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1448da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14499566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14502798e883SHong Zhang its--; 1451da3a660dSBarry Smith } 14522798e883SHong Zhang while (its--) { 14539566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14549566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14552798e883SHong Zhang 1456c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14579566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14589566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14592798e883SHong Zhang 1460c14dc6b6SHong Zhang /* local sweep */ 14619566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14622798e883SHong Zhang } 1463a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1464a7420bb7SBarry Smith Vec xx1; 1465a7420bb7SBarry Smith 14669566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1468a7420bb7SBarry Smith 14699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1471a7420bb7SBarry Smith if (!mat->diag) { 14729566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14739566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1474a7420bb7SBarry Smith } 14759566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1476bd0c2dcbSBarry Smith if (hasop) { 14779566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1478bd0c2dcbSBarry Smith } else { 14799566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1480bd0c2dcbSBarry Smith } 14819566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1482887ee2caSBarry Smith 14839566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1484a7420bb7SBarry Smith 1485a7420bb7SBarry Smith /* local sweep */ 14869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14879566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1489ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1490c14dc6b6SHong Zhang 14919566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1492a0808db4SHong Zhang 14937b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14958a729477SBarry Smith } 1496a66be287SLois Curfman McInnes 1497ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1498d71ae5a4SJacob Faibussowitsch { 149972e6a0cfSJed Brown Mat aA, aB, Aperm; 150072e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 150172e6a0cfSJed Brown PetscScalar *aa, *ba; 150272e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 150372e6a0cfSJed Brown PetscSF rowsf, sf; 15040298fd71SBarry Smith IS parcolp = NULL; 150572e6a0cfSJed Brown PetscBool done; 150642e855d1Svictor 150742e855d1Svictor PetscFunctionBegin; 15089566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15119566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 151272e6a0cfSJed Brown 151372e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15169566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 151772e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15199566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 152072e6a0cfSJed Brown 152172e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15229566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15249566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 152572e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15269566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15279566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15289566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152972e6a0cfSJed Brown 15309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15329566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 153372e6a0cfSJed Brown 153472e6a0cfSJed Brown /* Find out where my gcols should go */ 15359566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15379566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15389566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15399566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15429566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 154372e6a0cfSJed Brown 15449566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15459566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15469566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 154772e6a0cfSJed Brown for (i = 0; i < m; i++) { 1548131c27b5Sprj- PetscInt row = rdest[i]; 1549131c27b5Sprj- PetscMPIInt rowner; 15509566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 155172e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1552131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1553131c27b5Sprj- PetscMPIInt cowner; 15549566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 155572e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155672e6a0cfSJed Brown else onnz[i]++; 155772e6a0cfSJed Brown } 155872e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1559131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1560131c27b5Sprj- PetscMPIInt cowner; 15619566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 156272e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 156372e6a0cfSJed Brown else onnz[i]++; 156472e6a0cfSJed Brown } 156572e6a0cfSJed Brown } 15669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15709566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 157172e6a0cfSJed Brown 15729566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 157572e6a0cfSJed Brown for (i = 0; i < m; i++) { 157672e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1577970468b0SJed Brown PetscInt j0, rowlen; 157872e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1579970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1580970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15819566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1582970468b0SJed Brown } 158372e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1584970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1585970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15869566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1587970468b0SJed Brown } 158872e6a0cfSJed Brown } 15899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15919566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15929566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15959566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15969566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15979566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15989566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159972e6a0cfSJed Brown *B = Aperm; 16003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 160142e855d1Svictor } 160242e855d1Svictor 1603ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1604d71ae5a4SJacob Faibussowitsch { 1605c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1606c5e4d11fSDmitry Karpeev 1607c5e4d11fSDmitry Karpeev PetscFunctionBegin; 16089566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1609c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1611c5e4d11fSDmitry Karpeev } 1612c5e4d11fSDmitry Karpeev 1613ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1614d71ae5a4SJacob Faibussowitsch { 1615a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1616a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16173966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1618a66be287SLois Curfman McInnes 16193a40ed3dSBarry Smith PetscFunctionBegin; 16204e220ebcSLois Curfman McInnes info->block_size = 1.0; 16219566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16222205254eSKarl Rupp 16239371c9d4SSatish Balay isend[0] = info->nz_used; 16249371c9d4SSatish Balay isend[1] = info->nz_allocated; 16259371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16269371c9d4SSatish Balay isend[3] = info->memory; 16279371c9d4SSatish Balay isend[4] = info->mallocs; 16282205254eSKarl Rupp 16299566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16302205254eSKarl Rupp 16319371c9d4SSatish Balay isend[0] += info->nz_used; 16329371c9d4SSatish Balay isend[1] += info->nz_allocated; 16339371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16349371c9d4SSatish Balay isend[3] += info->memory; 16359371c9d4SSatish Balay isend[4] += info->mallocs; 1636a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16374e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16384e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16394e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16404e220ebcSLois Curfman McInnes info->memory = isend[3]; 16414e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1642a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1643462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16442205254eSKarl Rupp 16454e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16464e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16474e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16484e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16494e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1650a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1651462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16522205254eSKarl Rupp 16534e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16544e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16554e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16564e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16574e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1658a66be287SLois Curfman McInnes } 16594e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16604e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16614e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1663a66be287SLois Curfman McInnes } 1664a66be287SLois Curfman McInnes 1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1666d71ae5a4SJacob Faibussowitsch { 1667c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1668c74985f6SBarry Smith 16693a40ed3dSBarry Smith PetscFunctionBegin; 167012c028f9SKris Buschelman switch (op) { 1671512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 167212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 167328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1674a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 167512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16760ad02fcaSStefano Zampini case MAT_USE_INODES: 167712c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16781a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1679fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168212c028f9SKris Buschelman break; 168312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 168443674050SBarry Smith MatCheckPreallocated(A, 1); 16854e0d8c25SBarry Smith a->roworiented = flg; 16862205254eSKarl Rupp 16879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16889566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168912c028f9SKris Buschelman break; 1690d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1691d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1692d71ae5a4SJacob Faibussowitsch break; 1693c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1694ffa07934SHong Zhang case MAT_SPD: 169577e54ba9SKris Buschelman case MAT_SYMMETRIC: 169677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1697bf108f30SBarry Smith case MAT_HERMITIAN: 1698bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1699b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1700b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1701b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 17029725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 170377e54ba9SKris Buschelman break; 1704d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1705d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1706d71ae5a4SJacob Faibussowitsch break; 1707d71ae5a4SJacob Faibussowitsch default: 1708888c827cSStefano Zampini break; 17093a40ed3dSBarry Smith } 17103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1711c74985f6SBarry Smith } 1712c74985f6SBarry Smith 1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1714d71ae5a4SJacob Faibussowitsch { 1715154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 171687828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1717d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1718d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1719b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 172039e00950SLois Curfman McInnes 17213a40ed3dSBarry Smith PetscFunctionBegin; 172228b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17237a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17247a0afa10SBarry Smith 172570f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17267a0afa10SBarry Smith /* 17277a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17287a0afa10SBarry Smith */ 17297a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1730b1d57f15SBarry Smith PetscInt max = 1, tmp; 1731d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17327a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17332205254eSKarl Rupp if (max < tmp) max = tmp; 17347a0afa10SBarry Smith } 17359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17367a0afa10SBarry Smith } 17377a0afa10SBarry Smith 1738aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1739abc0e9e4SLois Curfman McInnes lrow = row - rstart; 174039e00950SLois Curfman McInnes 17419371c9d4SSatish Balay pvA = &vworkA; 17429371c9d4SSatish Balay pcA = &cworkA; 17439371c9d4SSatish Balay pvB = &vworkB; 17449371c9d4SSatish Balay pcB = &cworkB; 17459371c9d4SSatish Balay if (!v) { 17469371c9d4SSatish Balay pvA = NULL; 17479371c9d4SSatish Balay pvB = NULL; 17489371c9d4SSatish Balay } 17499371c9d4SSatish Balay if (!idx) { 17509371c9d4SSatish Balay pcA = NULL; 17519371c9d4SSatish Balay if (!v) pcB = NULL; 17529371c9d4SSatish Balay } 17539566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17549566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1755154123eaSLois Curfman McInnes nztot = nzA + nzB; 1756154123eaSLois Curfman McInnes 175770f0671dSBarry Smith cmap = mat->garray; 1758154123eaSLois Curfman McInnes if (v || idx) { 1759154123eaSLois Curfman McInnes if (nztot) { 1760154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1761b1d57f15SBarry Smith PetscInt imark = -1; 1762154123eaSLois Curfman McInnes if (v) { 176370f0671dSBarry Smith *v = v_p = mat->rowvalues; 176439e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 176570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1766154123eaSLois Curfman McInnes else break; 1767154123eaSLois Curfman McInnes } 1768154123eaSLois Curfman McInnes imark = i; 176970f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 177070f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1771154123eaSLois Curfman McInnes } 1772154123eaSLois Curfman McInnes if (idx) { 177370f0671dSBarry Smith *idx = idx_p = mat->rowindices; 177470f0671dSBarry Smith if (imark > -1) { 1775ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 177670f0671dSBarry Smith } else { 1777154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 177870f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1779154123eaSLois Curfman McInnes else break; 1780154123eaSLois Curfman McInnes } 1781154123eaSLois Curfman McInnes imark = i; 178270f0671dSBarry Smith } 178370f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 178470f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 178539e00950SLois Curfman McInnes } 17863f97c4b0SBarry Smith } else { 1787f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1788f4259b30SLisandro Dalcin if (v) *v = NULL; 17891ca473b0SSatish Balay } 1790154123eaSLois Curfman McInnes } 179139e00950SLois Curfman McInnes *nz = nztot; 17929566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17939566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179539e00950SLois Curfman McInnes } 179639e00950SLois Curfman McInnes 1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1798d71ae5a4SJacob Faibussowitsch { 17997a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 18003a40ed3dSBarry Smith 18013a40ed3dSBarry Smith PetscFunctionBegin; 180228b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18037a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180539e00950SLois Curfman McInnes } 180639e00950SLois Curfman McInnes 1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1808d71ae5a4SJacob Faibussowitsch { 1809855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1810ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1811d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1812329f5518SBarry Smith PetscReal sum = 0.0; 1813fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 181404ca555eSLois Curfman McInnes 18153a40ed3dSBarry Smith PetscFunctionBegin; 181617699dbbSLois Curfman McInnes if (aij->size == 1) { 18179566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 181837fa93a5SLois Curfman McInnes } else { 18199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 182104ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1822fff043a9SJunchao Zhang v = amata; 182304ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18249371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18259371c9d4SSatish Balay v++; 182604ca555eSLois Curfman McInnes } 1827fff043a9SJunchao Zhang v = bmata; 182804ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18299371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18309371c9d4SSatish Balay v++; 183104ca555eSLois Curfman McInnes } 1832462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18338f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18349566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18353a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1836e91c04dfSPierre Jolivet PetscReal *tmp; 1837b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18389566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 183904ca555eSLois Curfman McInnes *norm = 0.0; 18409371c9d4SSatish Balay v = amata; 18419371c9d4SSatish Balay jj = amat->j; 184204ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18439371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18449371c9d4SSatish Balay v++; 184504ca555eSLois Curfman McInnes } 18469371c9d4SSatish Balay v = bmata; 18479371c9d4SSatish Balay jj = bmat->j; 184804ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18499371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18509371c9d4SSatish Balay v++; 185104ca555eSLois Curfman McInnes } 1852e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1853d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 1854e91c04dfSPierre Jolivet if (tmp[j] > *norm) *norm = tmp[j]; 185504ca555eSLois Curfman McInnes } 18569566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18579566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18583a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1859329f5518SBarry Smith PetscReal ntemp = 0.0; 1860d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18618e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186204ca555eSLois Curfman McInnes sum = 0.0; 186304ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18649371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18659371c9d4SSatish Balay v++; 186604ca555eSLois Curfman McInnes } 18678e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186804ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18699371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18709371c9d4SSatish Balay v++; 187104ca555eSLois Curfman McInnes } 1872515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187304ca555eSLois Curfman McInnes } 1874462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18759566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1876ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 187937fa93a5SLois Curfman McInnes } 18803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1881855ac2c5SLois Curfman McInnes } 1882855ac2c5SLois Curfman McInnes 1883ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1884d71ae5a4SJacob Faibussowitsch { 1885a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1886a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1887071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1888071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1889a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1890ce496241SStefano Zampini const MatScalar *pbv, *bv; 1891b7c46309SBarry Smith 18923a40ed3dSBarry Smith PetscFunctionBegin; 18937fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18949371c9d4SSatish Balay ma = A->rmap->n; 18959371c9d4SSatish Balay na = A->cmap->n; 18969371c9d4SSatish Balay mb = a->B->rmap->n; 18979371c9d4SSatish Balay nb = a->B->cmap->n; 18989371c9d4SSatish Balay ai = Aloc->i; 18999371c9d4SSatish Balay aj = Aloc->j; 19009371c9d4SSatish Balay bi = Bloc->i; 19019371c9d4SSatish Balay bj = Bloc->j; 1902fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190380bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 190480bcc5a1SJed Brown PetscSFNode *oloc; 1905713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190680bcc5a1SJed Brown 19079566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190880bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19099566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1910cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191180bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19129566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191380bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 191480bcc5a1SJed Brown /* map those to global */ 19159566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19169566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19179566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 191957168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 192057168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19219566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1922d4bb536fSBarry Smith 19239566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 192558b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(B, A->cmap->bs, A->rmap->bs)); 19269566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19289566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1929fc4dec0aSBarry Smith } else { 1930fc4dec0aSBarry Smith B = *matout; 19319566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1932fc4dec0aSBarry Smith } 1933b7c46309SBarry Smith 1934f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1935a8661f62Sandi selinger A_diag = a->A; 1936a8661f62Sandi selinger B_diag = &b->A; 1937a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1938a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1939a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1940a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1941f79cb1a0Sandi selinger 1942f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1943ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1944f79cb1a0Sandi selinger 19454cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1946a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19477fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19489566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1949f79cb1a0Sandi selinger 1950b7c46309SBarry Smith /* copy over the B part */ 19519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1953ce496241SStefano Zampini pbv = bv; 1954d0f46423SBarry Smith row = A->rmap->rstart; 19552205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195661a2fbbaSHong Zhang cols_tmp = cols; 1957da668accSHong Zhang for (i = 0; i < mb; i++) { 1958da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19599566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19602205254eSKarl Rupp row++; 1961720a2405SPierre Jolivet if (pbv) pbv += ncol; 1962720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1963b7c46309SBarry Smith } 19649566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1966fc73b1b3SBarry Smith 19679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1969cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19700de55854SLois Curfman McInnes *matout = B; 19710de55854SLois Curfman McInnes } else { 19729566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19730de55854SLois Curfman McInnes } 19743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1975b7c46309SBarry Smith } 1976b7c46309SBarry Smith 1977ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1978d71ae5a4SJacob Faibussowitsch { 19794b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19804b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1981b1d57f15SBarry Smith PetscInt s1, s2, s3; 1982a008b906SSatish Balay 19833a40ed3dSBarry Smith PetscFunctionBegin; 19849566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19854b967eb1SSatish Balay if (rr) { 19869566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198708401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19884b967eb1SSatish Balay /* Overlap communication with computation. */ 19899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1990a008b906SSatish Balay } 19914b967eb1SSatish Balay if (ll) { 19929566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199308401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1994dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19954b967eb1SSatish Balay } 19964b967eb1SSatish Balay /* scale the diagonal block */ 1997dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19984b967eb1SSatish Balay 19994b967eb1SSatish Balay if (rr) { 20004b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2002dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20034b967eb1SSatish Balay } 20043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2005a008b906SSatish Balay } 2006a008b906SSatish Balay 2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2008d71ae5a4SJacob Faibussowitsch { 2009bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20103a40ed3dSBarry Smith 20113a40ed3dSBarry Smith PetscFunctionBegin; 20129566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2014bb5a7306SBarry Smith } 2015bb5a7306SBarry Smith 2016ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2017d71ae5a4SJacob Faibussowitsch { 2018d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2019d4bb536fSBarry Smith Mat a, b, c, d; 2020ace3abfcSBarry Smith PetscBool flg; 2021d4bb536fSBarry Smith 20223a40ed3dSBarry Smith PetscFunctionBegin; 20239371c9d4SSatish Balay a = matA->A; 20249371c9d4SSatish Balay b = matA->B; 20259371c9d4SSatish Balay c = matB->A; 20269371c9d4SSatish Balay d = matB->B; 2027d4bb536fSBarry Smith 20289566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 202948a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 2030462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2032d4bb536fSBarry Smith } 2033d4bb536fSBarry Smith 2034ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2035d71ae5a4SJacob Faibussowitsch { 2036cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2037cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2038cb5b572fSBarry Smith 2039cb5b572fSBarry Smith PetscFunctionBegin; 204033f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204133f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2042cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2043cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2044cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2045cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2046cb5b572fSBarry Smith then copying the submatrices */ 20479566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2048cb5b572fSBarry Smith } else { 20499566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20509566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2051cb5b572fSBarry Smith } 20529566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2054cb5b572fSBarry Smith } 2055cb5b572fSBarry Smith 2056001ddc4fSHong Zhang /* 2057001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2058001ddc4fSHong Zhang have different nonzero structure. 2059001ddc4fSHong Zhang */ 2060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2061d71ae5a4SJacob Faibussowitsch { 2062001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206395b7e79eSJed Brown 206495b7e79eSJed Brown PetscFunctionBegin; 206595b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206695b7e79eSJed Brown for (i = 0; i < m; i++) { 20678e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2068001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2069001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 207095b7e79eSJed Brown nnz[i] = 0; 207195b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2072001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2073001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 207495b7e79eSJed Brown nnz[i]++; 207595b7e79eSJed Brown } 207695b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207795b7e79eSJed Brown } 20783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207995b7e79eSJed Brown } 208095b7e79eSJed Brown 2081001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2082d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2083d71ae5a4SJacob Faibussowitsch { 2084001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2085001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2086001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2087001ddc4fSHong Zhang 2088001ddc4fSHong Zhang PetscFunctionBegin; 20899566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2091001ddc4fSHong Zhang } 2092001ddc4fSHong Zhang 2093ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2094d71ae5a4SJacob Faibussowitsch { 2095ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2096ac90fabeSBarry Smith 2097ac90fabeSBarry Smith PetscFunctionBegin; 2098ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20999566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 21009566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2101ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21029566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2103ac90fabeSBarry Smith } else { 21049f5f6813SShri Abhyankar Mat B; 21059f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2106d9d719b4SStefano Zampini 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21099566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21119566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21129566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21139566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21149566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21159566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21169566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21179566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21189566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21199566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2120ac90fabeSBarry Smith } 21213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2122ac90fabeSBarry Smith } 2123ac90fabeSBarry Smith 21242726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2125354c94deSBarry Smith 2126ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2127d71ae5a4SJacob Faibussowitsch { 21285f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21295f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2130354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2131354c94deSBarry Smith 21329566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21339566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21345f80ce2aSJacob Faibussowitsch } 21353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2136354c94deSBarry Smith } 2137354c94deSBarry Smith 2138ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2139d71ae5a4SJacob Faibussowitsch { 214099cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214199cafbc1SBarry Smith 214299cafbc1SBarry Smith PetscFunctionBegin; 21439566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21449566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214699cafbc1SBarry Smith } 214799cafbc1SBarry Smith 2148ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2149d71ae5a4SJacob Faibussowitsch { 215099cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215199cafbc1SBarry Smith 215299cafbc1SBarry Smith PetscFunctionBegin; 21539566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21549566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215699cafbc1SBarry Smith } 215799cafbc1SBarry Smith 2158ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2159d71ae5a4SJacob Faibussowitsch { 2160c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2161475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 216262e5df07SMark Adams PetscScalar *vv; 2163475b8b61SHong Zhang Vec vB, vA; 216462e5df07SMark Adams const PetscScalar *va, *vb; 2165c91732d9SHong Zhang 2166c91732d9SHong Zhang PetscFunctionBegin; 2167c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21689566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2169475b8b61SHong Zhang 217062e5df07SMark Adams PetscCall(VecGetArrayRead(vA, &va)); 2171c91732d9SHong Zhang if (idx) { 2172475b8b61SHong Zhang for (i = 0; i < m; i++) { 2173d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2174c91732d9SHong Zhang } 2175c91732d9SHong Zhang } 2176c91732d9SHong Zhang 2177c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21799566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2180c91732d9SHong Zhang 21819566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21829566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2183475b8b61SHong Zhang for (i = 0; i < m; i++) { 2184c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2185475b8b61SHong Zhang vv[i] = vb[i]; 2186c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2187475b8b61SHong Zhang } else { 2188475b8b61SHong Zhang vv[i] = va[i]; 21899371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2190c91732d9SHong Zhang } 2191c91732d9SHong Zhang } 219262e5df07SMark Adams PetscCall(VecRestoreArrayWrite(v, &vv)); 219362e5df07SMark Adams PetscCall(VecRestoreArrayRead(vA, &va)); 21949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21959566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2199c91732d9SHong Zhang } 2200c91732d9SHong Zhang 2201eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2202eede4a3fSMark Adams { 2203eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2204eede4a3fSMark Adams Vec vB, vA; 2205eede4a3fSMark Adams 2206eede4a3fSMark Adams PetscFunctionBegin; 2207c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2208eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2209c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2210eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2211eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2212eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2213eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2214eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2215eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2216eede4a3fSMark Adams } 2217eede4a3fSMark Adams 2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2219d71ae5a4SJacob Faibussowitsch { 2220f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2221f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2222f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2223f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2224f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2225f07e67edSHong Zhang Vec diagV, offdiagV; 2226ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2227ce496241SStefano Zampini const PetscScalar *ba, *bav; 2228f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2229f07e67edSHong Zhang Mat B = mat->B; 2230f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2231c87e5d42SMatthew Knepley 2232c87e5d42SMatthew Knepley PetscFunctionBegin; 2233f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2234f07e67edSHong Zhang if (A->cmap->N == n) { 22359566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22369566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22379566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2241f07e67edSHong Zhang } else if (n == 0) { 2242f07e67edSHong Zhang if (m) { 22439566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22449371c9d4SSatish Balay for (r = 0; r < m; r++) { 22459371c9d4SSatish Balay a[r] = 0.0; 22469371c9d4SSatish Balay if (idx) idx[r] = -1; 22479371c9d4SSatish Balay } 22489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2249f07e67edSHong Zhang } 22503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2251f07e67edSHong Zhang } 2252f07e67edSHong Zhang 22539566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22549566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22559566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22569566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2257f07e67edSHong Zhang 2258f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2260ce496241SStefano Zampini ba = bav; 2261f07e67edSHong Zhang bi = b->i; 2262f07e67edSHong Zhang bj = b->j; 22639566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2264f07e67edSHong Zhang for (r = 0; r < m; r++) { 2265f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2266f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22679371c9d4SSatish Balay offdiagA[r] = *ba; 22689371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2269f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2270f07e67edSHong Zhang offdiagA[r] = 0.0; 2271f07e67edSHong Zhang 2272f07e67edSHong Zhang /* Find first hole in the cmap */ 2273f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2274f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2275f07e67edSHong Zhang if (col > j && j < cstart) { 2276f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2277f07e67edSHong Zhang break; 2278f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2279f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2280f07e67edSHong Zhang break; 2281f07e67edSHong Zhang } 2282f07e67edSHong Zhang } 22834e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2284f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2285f07e67edSHong Zhang if (ncols == 0) { 2286f07e67edSHong Zhang if (cstart) { 2287f07e67edSHong Zhang offdiagIdx[r] = 0; 2288f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2289f07e67edSHong Zhang } else { /* ncols > 0 */ 2290f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2291f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2292f07e67edSHong Zhang } 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang } 2295f07e67edSHong Zhang 2296f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22979371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22989371c9d4SSatish Balay offdiagA[r] = *ba; 22999371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 23009371c9d4SSatish Balay } 23019371c9d4SSatish Balay ba++; 23029371c9d4SSatish Balay bj++; 2303f07e67edSHong Zhang } 2304f07e67edSHong Zhang } 2305f07e67edSHong Zhang 23069566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23079566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2308f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2309f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2310f07e67edSHong Zhang a[r] = diagA[r]; 2311f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2312f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2313f07e67edSHong Zhang a[r] = diagA[r]; 2314c87e5d42SMatthew Knepley if (idx) { 2315f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2316f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2317f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2318f07e67edSHong Zhang } 2319f07e67edSHong Zhang } else { 2320f07e67edSHong Zhang a[r] = offdiagA[r]; 2321f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2322c87e5d42SMatthew Knepley } 2323c87e5d42SMatthew Knepley } 23249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23309566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2332c87e5d42SMatthew Knepley } 2333c87e5d42SMatthew Knepley 2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2335d71ae5a4SJacob Faibussowitsch { 233603bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2337fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2338fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233903bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 234003bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 234103bc72f1SMatthew Knepley Vec diagV, offdiagV; 2342ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2343ce496241SStefano Zampini const PetscScalar *ba, *bav; 2344fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2345fa213d2fSHong Zhang Mat B = mat->B; 2346fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234703bc72f1SMatthew Knepley 234803bc72f1SMatthew Knepley PetscFunctionBegin; 2349fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2350fa213d2fSHong Zhang if (A->cmap->N == n) { 23519566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23529566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23539566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2357fa213d2fSHong Zhang } else if (n == 0) { 2358fa213d2fSHong Zhang if (m) { 23599566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23609371c9d4SSatish Balay for (r = 0; r < m; r++) { 23619371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23629371c9d4SSatish Balay if (idx) idx[r] = -1; 23639371c9d4SSatish Balay } 23649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2365fa213d2fSHong Zhang } 23663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2367fa213d2fSHong Zhang } 2368fa213d2fSHong Zhang 23699566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23709566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23719566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23729566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2373fa213d2fSHong Zhang 2374fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2376ce496241SStefano Zampini ba = bav; 2377fa213d2fSHong Zhang bi = b->i; 2378fa213d2fSHong Zhang bj = b->j; 23799566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2380fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2381fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2382fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23839371c9d4SSatish Balay offdiagA[r] = *ba; 23849371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2385fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2386fa213d2fSHong Zhang offdiagA[r] = 0.0; 2387fa213d2fSHong Zhang 2388fa213d2fSHong Zhang /* Find first hole in the cmap */ 2389fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2390fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2391fa213d2fSHong Zhang if (col > j && j < cstart) { 2392fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2393fa213d2fSHong Zhang break; 2394fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2395fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2396fa213d2fSHong Zhang break; 2397fa213d2fSHong Zhang } 2398fa213d2fSHong Zhang } 23994e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2400fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2401fa213d2fSHong Zhang if (ncols == 0) { 2402fa213d2fSHong Zhang if (cstart) { 2403fa213d2fSHong Zhang offdiagIdx[r] = 0; 2404fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2405fa213d2fSHong Zhang } else { /* ncols > 0 */ 2406fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2407fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2408fa213d2fSHong Zhang } 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang } 2411fa213d2fSHong Zhang 2412fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24139371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24149371c9d4SSatish Balay offdiagA[r] = *ba; 24159371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24169371c9d4SSatish Balay } 24179371c9d4SSatish Balay ba++; 24189371c9d4SSatish Balay bj++; 2419fa213d2fSHong Zhang } 2420fa213d2fSHong Zhang } 2421fa213d2fSHong Zhang 24229566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2424fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2425fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242603bc72f1SMatthew Knepley a[r] = diagA[r]; 2427fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2428fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2429fa213d2fSHong Zhang a[r] = diagA[r]; 2430fa213d2fSHong Zhang if (idx) { 2431fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 243203bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2433fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2434fa213d2fSHong Zhang } 243503bc72f1SMatthew Knepley } else { 243603bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2437fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243803bc72f1SMatthew Knepley } 243903bc72f1SMatthew Knepley } 24409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24469566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244803bc72f1SMatthew Knepley } 244903bc72f1SMatthew Knepley 2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2451d71ae5a4SJacob Faibussowitsch { 2452c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24531a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24541a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2455c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2456c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2457c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2458ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2459ce496241SStefano Zampini const PetscScalar *ba, *bav; 24601a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24611a254869SHong Zhang Mat B = mat->B; 24621a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2463c87e5d42SMatthew Knepley 2464c87e5d42SMatthew Knepley PetscFunctionBegin; 24651a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24661a254869SHong Zhang if (A->cmap->N == n) { 24679566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24689566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24699566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24719566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24731a254869SHong Zhang } else if (n == 0) { 24741a254869SHong Zhang if (m) { 24759566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24769371c9d4SSatish Balay for (r = 0; r < m; r++) { 24779371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24789371c9d4SSatish Balay if (idx) idx[r] = -1; 24799371c9d4SSatish Balay } 24809566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24811a254869SHong Zhang } 24823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24831a254869SHong Zhang } 24841a254869SHong Zhang 24859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24869566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24879566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24889566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24891a254869SHong Zhang 24901a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2492ce496241SStefano Zampini ba = bav; 24931a254869SHong Zhang bi = b->i; 24941a254869SHong Zhang bj = b->j; 24959566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24961a254869SHong Zhang for (r = 0; r < m; r++) { 24971a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24981a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24999371c9d4SSatish Balay offdiagA[r] = *ba; 25009371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 25011a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 25021a254869SHong Zhang offdiagA[r] = 0.0; 25031a254869SHong Zhang 25041a254869SHong Zhang /* Find first hole in the cmap */ 25051a254869SHong Zhang for (j = 0; j < ncols; j++) { 25061a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25071a254869SHong Zhang if (col > j && j < cstart) { 25081a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25091a254869SHong Zhang break; 25101a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25111a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25121a254869SHong Zhang break; 25131a254869SHong Zhang } 25141a254869SHong Zhang } 25154e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25161a254869SHong Zhang /* a hole is outside compressed Bcols */ 25171a254869SHong Zhang if (ncols == 0) { 25181a254869SHong Zhang if (cstart) { 25191a254869SHong Zhang offdiagIdx[r] = 0; 25201a254869SHong Zhang } else offdiagIdx[r] = cend; 25211a254869SHong Zhang } else { /* ncols > 0 */ 25221a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25231a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25241a254869SHong Zhang } 25251a254869SHong Zhang } 25261a254869SHong Zhang } 25271a254869SHong Zhang 25281a254869SHong Zhang for (j = 0; j < ncols; j++) { 25299371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25309371c9d4SSatish Balay offdiagA[r] = *ba; 25319371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25329371c9d4SSatish Balay } 25339371c9d4SSatish Balay ba++; 25349371c9d4SSatish Balay bj++; 25351a254869SHong Zhang } 25361a254869SHong Zhang } 25371a254869SHong Zhang 25389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25399566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25401a254869SHong Zhang for (r = 0; r < m; ++r) { 25411a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2542c87e5d42SMatthew Knepley a[r] = diagA[r]; 25431a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25441a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25451a254869SHong Zhang a[r] = diagA[r]; 25461a254869SHong Zhang if (idx) { 25471a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2548c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25491a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25501a254869SHong Zhang } 2551c87e5d42SMatthew Knepley } else { 2552c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25531a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2554c87e5d42SMatthew Knepley } 2555c87e5d42SMatthew Knepley } 25569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25629566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2564c87e5d42SMatthew Knepley } 2565c87e5d42SMatthew Knepley 2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2567d71ae5a4SJacob Faibussowitsch { 2568f6d58c54SBarry Smith Mat *dummy; 25695494a064SHong Zhang 25705494a064SHong Zhang PetscFunctionBegin; 25719566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2572f6d58c54SBarry Smith *newmat = *dummy; 25739566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25755494a064SHong Zhang } 25765494a064SHong Zhang 2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2578d71ae5a4SJacob Faibussowitsch { 2579bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2580bbead8a2SBarry Smith 2581bbead8a2SBarry Smith PetscFunctionBegin; 25829566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25837b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2585bbead8a2SBarry Smith } 2586bbead8a2SBarry Smith 2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2588d71ae5a4SJacob Faibussowitsch { 258973a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 259073a71a0fSBarry Smith 259173a71a0fSBarry Smith PetscFunctionBegin; 259208401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25939566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2594679944adSJunchao Zhang if (x->assembled) { 25959566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2596679944adSJunchao Zhang } else { 25979566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2598679944adSJunchao Zhang } 25999566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 26009566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 26013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260273a71a0fSBarry Smith } 2603bbead8a2SBarry Smith 2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2605d71ae5a4SJacob Faibussowitsch { 2606b1b1104fSBarry Smith PetscFunctionBegin; 2607b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2608b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2610b1b1104fSBarry Smith } 2611b1b1104fSBarry Smith 2612b1b1104fSBarry Smith /*@ 2613f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2614f2afee66SBarry Smith 26152ef1f0ffSBarry Smith Not Collective 2616f2afee66SBarry Smith 2617f2afee66SBarry Smith Input Parameter: 2618f2afee66SBarry Smith . A - the matrix 2619f2afee66SBarry Smith 2620f2afee66SBarry Smith Output Parameter: 2621f2afee66SBarry Smith . nz - the number of nonzeros 2622f2afee66SBarry Smith 2623f2afee66SBarry Smith Level: advanced 2624f2afee66SBarry Smith 2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2626f2afee66SBarry Smith @*/ 2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2628d71ae5a4SJacob Faibussowitsch { 2629f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2630f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2631dfebb78cSStefano Zampini PetscBool isaij; 2632f2afee66SBarry Smith 2633f2afee66SBarry Smith PetscFunctionBegin; 2634dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2635dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2636f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2638f2afee66SBarry Smith } 2639f2afee66SBarry Smith 2640f2afee66SBarry Smith /*@ 2641b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2642b1b1104fSBarry Smith 2643c3339decSBarry Smith Collective 2644b1b1104fSBarry Smith 2645b1b1104fSBarry Smith Input Parameters: 2646b1b1104fSBarry Smith + A - the matrix 264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2648b1b1104fSBarry Smith 264996a0c994SBarry Smith Level: advanced 265096a0c994SBarry Smith 2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2652b1b1104fSBarry Smith @*/ 2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2654d71ae5a4SJacob Faibussowitsch { 2655b1b1104fSBarry Smith PetscFunctionBegin; 2656cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2658b1b1104fSBarry Smith } 2659b1b1104fSBarry Smith 2660ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject) 2661d71ae5a4SJacob Faibussowitsch { 2662b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2663b1b1104fSBarry Smith 2664b1b1104fSBarry Smith PetscFunctionBegin; 2665d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2666b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26679566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26681baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2669d0609cedSBarry Smith PetscOptionsHeadEnd(); 26703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2671b1b1104fSBarry Smith } 2672b1b1104fSBarry Smith 2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2674d71ae5a4SJacob Faibussowitsch { 26757d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2676c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26777d68702bSBarry Smith 26787d68702bSBarry Smith PetscFunctionBegin; 2679c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26809566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26815519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2682b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2684b83222d8SBarry Smith aij->nonew = nonew; 26857d68702bSBarry Smith } 26869566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26887d68702bSBarry Smith } 26897d68702bSBarry Smith 2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2691d71ae5a4SJacob Faibussowitsch { 26923b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26933b49f96aSBarry Smith 26943b49f96aSBarry Smith PetscFunctionBegin; 269508401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26969566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26973b49f96aSBarry Smith if (d) { 26983b49f96aSBarry Smith PetscInt rstart; 26999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 27003b49f96aSBarry Smith *d += rstart; 27013b49f96aSBarry Smith } 27023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27033b49f96aSBarry Smith } 27043b49f96aSBarry Smith 2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2706d71ae5a4SJacob Faibussowitsch { 2707a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2708a8ee9fb5SBarry Smith 2709a8ee9fb5SBarry Smith PetscFunctionBegin; 27109566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2712a8ee9fb5SBarry Smith } 27133b49f96aSBarry Smith 271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2715dec0b466SHong Zhang { 2716dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2717dec0b466SHong Zhang 2718dec0b466SHong Zhang PetscFunctionBegin; 271958c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 272058c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2722dec0b466SHong Zhang } 2723dec0b466SHong Zhang 2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2725cda55fadSBarry Smith MatGetRow_MPIAIJ, 2726cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2727cda55fadSBarry Smith MatMult_MPIAIJ, 272897304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27297c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27307c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2731f4259b30SLisandro Dalcin NULL, 2732f4259b30SLisandro Dalcin NULL, 2733f4259b30SLisandro Dalcin NULL, 2734f4259b30SLisandro Dalcin /*10*/ NULL, 2735f4259b30SLisandro Dalcin NULL, 2736f4259b30SLisandro Dalcin NULL, 273741f059aeSBarry Smith MatSOR_MPIAIJ, 2738b7c46309SBarry Smith MatTranspose_MPIAIJ, 273997304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2740cda55fadSBarry Smith MatEqual_MPIAIJ, 2741cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2742cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2743cda55fadSBarry Smith MatNorm_MPIAIJ, 274497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2745cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2746cda55fadSBarry Smith MatSetOption_MPIAIJ, 2747cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2748d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2749f4259b30SLisandro Dalcin NULL, 2750f4259b30SLisandro Dalcin NULL, 2751f4259b30SLisandro Dalcin NULL, 2752f4259b30SLisandro Dalcin NULL, 275326cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2754f4259b30SLisandro Dalcin NULL, 2755f4259b30SLisandro Dalcin NULL, 2756a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2757f4259b30SLisandro Dalcin NULL, 2758d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2759f4259b30SLisandro Dalcin NULL, 2760f4259b30SLisandro Dalcin NULL, 2761f4259b30SLisandro Dalcin NULL, 2762f4259b30SLisandro Dalcin NULL, 2763d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27647dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2765cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2766cda55fadSBarry Smith MatGetValues_MPIAIJ, 2767cb5b572fSBarry Smith MatCopy_MPIAIJ, 2768d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2769cda55fadSBarry Smith MatScale_MPIAIJ, 27707d68702bSBarry Smith MatShift_MPIAIJ, 277199e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2772564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 277373a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27748a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27758a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2776f4259b30SLisandro Dalcin NULL, 2777f4259b30SLisandro Dalcin NULL, 277893dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2779f4259b30SLisandro Dalcin NULL, 2780cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 278172e6a0cfSJed Brown MatPermute_MPIAIJ, 2782f4259b30SLisandro Dalcin NULL, 27837dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2784e03a110bSBarry Smith MatDestroy_MPIAIJ, 2785e03a110bSBarry Smith MatView_MPIAIJ, 2786f4259b30SLisandro Dalcin NULL, 2787f4259b30SLisandro Dalcin NULL, 2788f4259b30SLisandro Dalcin /*64*/ NULL, 2789f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 2792f4259b30SLisandro Dalcin NULL, 2793d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2794c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2795f4259b30SLisandro Dalcin NULL, 2796f4259b30SLisandro Dalcin NULL, 2797f4259b30SLisandro Dalcin NULL, 2798f4259b30SLisandro Dalcin NULL, 27993acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2800b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2801f4259b30SLisandro Dalcin NULL, 2802f4259b30SLisandro Dalcin NULL, 2803f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2804f4259b30SLisandro Dalcin /*80*/ NULL, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin NULL, 28075bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 28086cff0a6bSPierre Jolivet NULL, 2809f4259b30SLisandro Dalcin NULL, 2810f4259b30SLisandro Dalcin NULL, 2811f4259b30SLisandro Dalcin NULL, 2812f4259b30SLisandro Dalcin NULL, 2813f4259b30SLisandro Dalcin /*89*/ NULL, 2814f4259b30SLisandro Dalcin NULL, 281526be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2816f4259b30SLisandro Dalcin NULL, 2817f4259b30SLisandro Dalcin NULL, 2818cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2819f4259b30SLisandro Dalcin NULL, 2820f4259b30SLisandro Dalcin NULL, 2821f4259b30SLisandro Dalcin NULL, 2822b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28234222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2824f4259b30SLisandro Dalcin NULL, 2825f4259b30SLisandro Dalcin NULL, 28262fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2827f4259b30SLisandro Dalcin NULL, 2828d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 282999cafbc1SBarry Smith MatRealPart_MPIAIJ, 283069db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2831f4259b30SLisandro Dalcin NULL, 2832f4259b30SLisandro Dalcin NULL, 2833f4259b30SLisandro Dalcin /*109*/ NULL, 2834f4259b30SLisandro Dalcin NULL, 28355494a064SHong Zhang MatGetRowMin_MPIAIJ, 2836f4259b30SLisandro Dalcin NULL, 28373b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2838d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2839f4259b30SLisandro Dalcin NULL, 2840c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2841f4259b30SLisandro Dalcin NULL, 2842f4259b30SLisandro Dalcin NULL, 2843b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2844f4259b30SLisandro Dalcin NULL, 2845f4259b30SLisandro Dalcin NULL, 2846f4259b30SLisandro Dalcin NULL, 2847b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2848f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2849a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2850bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2851a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28527dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2853f4259b30SLisandro Dalcin /*129*/ NULL, 2854f4259b30SLisandro Dalcin NULL, 2855f4259b30SLisandro Dalcin NULL, 2856187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2857f4259b30SLisandro Dalcin NULL, 2858f4259b30SLisandro Dalcin /*134*/ NULL, 2859f4259b30SLisandro Dalcin NULL, 2860f4259b30SLisandro Dalcin NULL, 2861f4259b30SLisandro Dalcin NULL, 2862f4259b30SLisandro Dalcin NULL, 286346533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2864f4259b30SLisandro Dalcin NULL, 2865f4259b30SLisandro Dalcin NULL, 28669c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2867a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28684222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2869f4259b30SLisandro Dalcin /*145*/ NULL, 2870f4259b30SLisandro Dalcin NULL, 287172833a62Smarkadams4 NULL, 287272833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28732d776b49SBarry Smith NULL, 2874dec0b466SHong Zhang /*150*/ NULL, 2875eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 28764cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 287742ce410bSJunchao Zhang NULL, 287842ce410bSJunchao Zhang NULL, 2879fe1fc275SAlexander /*155*/ NULL, 2880fe1fc275SAlexander MatCopyHashToXAIJ_MPI_Hash}; 288136ce4990SBarry Smith 2882ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2883d71ae5a4SJacob Faibussowitsch { 28842e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28852e8a6d31SBarry Smith 28862e8a6d31SBarry Smith PetscFunctionBegin; 28879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28889566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28902e8a6d31SBarry Smith } 28912e8a6d31SBarry Smith 2892ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2893d71ae5a4SJacob Faibussowitsch { 28942e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28952e8a6d31SBarry Smith 28962e8a6d31SBarry Smith PetscFunctionBegin; 28979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28989566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29002e8a6d31SBarry Smith } 29018a729477SBarry Smith 2902d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2903d71ae5a4SJacob Faibussowitsch { 2904ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29055d2a9ed1SStefano Zampini PetscMPIInt size; 2906a23d5eceSKris Buschelman 2907a23d5eceSKris Buschelman PetscFunctionBegin; 2908ad79cf63SBarry Smith if (B->hash_active) { 2909aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2910ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2911ad79cf63SBarry Smith } 29129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29139566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2914899cda47SBarry Smith 2915cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2916eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2917cb7b82ddSBarry Smith #else 29189566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2919cb7b82ddSBarry Smith #endif 29209566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29229566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2923cb7b82ddSBarry Smith 29249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2925c508b908SBarry Smith 2926c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29279566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29289566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29309566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29319566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2932c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2933cb7b82ddSBarry Smith 2934c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2935ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29369566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29389566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29399566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2940c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2941899cda47SBarry Smith 29429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2944526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2945cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 294615001458SStefano Zampini B->assembled = PETSC_FALSE; 29473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2948a23d5eceSKris Buschelman } 2949a23d5eceSKris Buschelman 2950ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2951d71ae5a4SJacob Faibussowitsch { 2952ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29534c51d546SAlexander PetscBool ondiagreset, offdiagreset, memoryreset; 2954846b4da1SFande Kong 2955846b4da1SFande Kong PetscFunctionBegin; 2956846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29574c51d546SAlexander PetscCheck(B->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAssemblyEnd()"); 29584c51d546SAlexander if (B->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS); 29594c51d546SAlexander 29604c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->A, &ondiagreset)); 29614c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->B, &offdiagreset)); 29624c51d546SAlexander memoryreset = (PetscBool)(ondiagreset || offdiagreset); 29634c51d546SAlexander PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &memoryreset, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)B))); 29644c51d546SAlexander if (!memoryreset) PetscFunctionReturn(PETSC_SUCCESS); 29654c51d546SAlexander 29669566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29679566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 29684c51d546SAlexander PetscCheck(B->assembled || B->was_assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Should not need to reset preallocation if the matrix was never assembled"); 29694c51d546SAlexander PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE)); 29709566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2971846b4da1SFande Kong 2972846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2973846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2974846b4da1SFande Kong B->assembled = PETSC_FALSE; 2975b3a35320SAlex Lindsay /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */ 2976b3a35320SAlex Lindsay PetscCall(PetscObjectStateIncrease((PetscObject)B)); 29773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2978846b4da1SFande Kong } 2979846b4da1SFande Kong 2980d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2981d71ae5a4SJacob Faibussowitsch { 2982d6dfbf8fSBarry Smith Mat mat; 2983416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2984d6dfbf8fSBarry Smith 29853a40ed3dSBarry Smith PetscFunctionBegin; 2986f4259b30SLisandro Dalcin *newmat = NULL; 29879566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29899566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29909566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2991273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2992e1b6402fSHong Zhang 2993d5f3da31SBarry Smith mat->factortype = matin->factortype; 2994501880eeSStefano Zampini mat->assembled = matin->assembled; 2995e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2996d6dfbf8fSBarry Smith 299717699dbbSLois Curfman McInnes a->size = oldmat->size; 299817699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2999e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 3000e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 3001501880eeSStefano Zampini a->rowindices = NULL; 3002501880eeSStefano Zampini a->rowvalues = NULL; 3003bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 3004d6dfbf8fSBarry Smith 30059566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 30069566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3007420957c1SBarry Smith if (matin->hash_active) { 3008420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3009420957c1SBarry Smith } else { 3010420957c1SBarry Smith mat->preallocated = matin->preallocated; 30112ee70a88SLois Curfman McInnes if (oldmat->colmap) { 3012aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3013eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3014b1fc9764SSatish Balay #else 30159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30169566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3017b1fc9764SSatish Balay #endif 3018501880eeSStefano Zampini } else a->colmap = NULL; 30193f41c07dSBarry Smith if (oldmat->garray) { 3020b1d57f15SBarry Smith PetscInt len; 3021d0f46423SBarry Smith len = oldmat->B->cmap->n; 30229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30239566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3024501880eeSStefano Zampini } else a->garray = NULL; 3025d6dfbf8fSBarry Smith 30260de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30270de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30280de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3029aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3030cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3031cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3032cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3033cff58d65SJunchao Zhang } 30349566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30359566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3036420957c1SBarry Smith } 30379566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30388a729477SBarry Smith *newmat = mat; 30393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30408a729477SBarry Smith } 3041416022c9SBarry Smith 3042d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3043d71ae5a4SJacob Faibussowitsch { 304452f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 304552f91c60SVaclav Hapla 304652f91c60SVaclav Hapla PetscFunctionBegin; 304752f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 304852f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3049c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30509566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 305352f91c60SVaclav Hapla if (isbinary) { 30549566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 305552f91c60SVaclav Hapla } else if (ishdf5) { 305652f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30579566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 305852f91c60SVaclav Hapla #else 305952f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 306052f91c60SVaclav Hapla #endif 306152f91c60SVaclav Hapla } else { 306298921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 306352f91c60SVaclav Hapla } 30643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 306552f91c60SVaclav Hapla } 306652f91c60SVaclav Hapla 3067d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3068d71ae5a4SJacob Faibussowitsch { 30693ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30703ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30713ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30728fb81238SShri Abhyankar 30738fb81238SShri Abhyankar PetscFunctionBegin; 30749566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30758fb81238SShri Abhyankar 30763ea6fe3dSLisandro Dalcin /* read in matrix header */ 30779566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 307808401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30799371c9d4SSatish Balay M = header[1]; 30809371c9d4SSatish Balay N = header[2]; 30819371c9d4SSatish Balay nz = header[3]; 308208401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 308308401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 308408401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 308508ea439dSMark F. Adams 30863ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30879566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30883ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30893ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30903ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30919566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30929566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30938fb81238SShri Abhyankar 30943ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30959566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3096aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30978fb81238SShri Abhyankar 30983ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30999566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 31009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 31019566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 31029371c9d4SSatish Balay rowidxs[0] = 0; 31039371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 31041690c2aeSBarry Smith if (nz != PETSC_INT_MAX) { 3105462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 310608401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 310738b83642SBarry Smith } 310838b83642SBarry Smith 31093ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 31109566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 31119566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 31129566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 31133ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 31149566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 31159566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31169566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31188fb81238SShri Abhyankar } 31198fb81238SShri Abhyankar 31203782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3121ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3122d71ae5a4SJacob Faibussowitsch { 31234aa3045dSJed Brown IS iscol_local; 3124c5e4d11fSDmitry Karpeev PetscBool isstride; 31259725ddffSPierre Jolivet PetscMPIInt gisstride = 0; 31263782ecc7SHong Zhang 31273782ecc7SHong Zhang PetscFunctionBegin; 31283782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31303782ecc7SHong Zhang 3131c5e4d11fSDmitry Karpeev if (isstride) { 3132c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31339566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31349566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31359566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 31369725ddffSPierre Jolivet if (mstart == start && mlen - mstart == len) gisstride = 1; 3137c5e4d11fSDmitry Karpeev } 31383782ecc7SHong Zhang 31399725ddffSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3140c5e4d11fSDmitry Karpeev if (gisstride) { 3141c5e4d11fSDmitry Karpeev PetscInt N; 31429566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31439566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31449566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31459566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3146c5e4d11fSDmitry Karpeev } else { 3147c5bfad50SMark F. Adams PetscInt cbs; 31489566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31499566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31509566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3151b79d0421SJed Brown } 31523782ecc7SHong Zhang 31533782ecc7SHong Zhang *isseq = iscol_local; 31543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3155c5e4d11fSDmitry Karpeev } 31568d2139bdSHong Zhang 3157ddfdf956SHong Zhang /* 31589c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31599c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3160ddfdf956SHong Zhang 3161ddfdf956SHong Zhang Input Parameters: 316227430b45SBarry Smith + mat - matrix 316327430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31649c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 316527430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3166ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 316727430b45SBarry Smith 316827430b45SBarry Smith Output Parameters: 316927430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 317027430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 317127430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 317227430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3173ddfdf956SHong Zhang */ 3174835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[]) 3175d71ae5a4SJacob Faibussowitsch { 3176040216a4SHong Zhang Vec x, cmap; 3177040216a4SHong Zhang const PetscInt *is_idx; 3178040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31799c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3180040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3181040216a4SHong Zhang Mat B = a->B; 3182040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3183a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31848b3fa1f7SHong Zhang MPI_Comm comm; 31853a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31863782ecc7SHong Zhang 31873782ecc7SHong Zhang PetscFunctionBegin; 31889566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31899566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31908b3fa1f7SHong Zhang 3191ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31929566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31939566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31949566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31959566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31960a351717SHong Zhang 31979c988bcaSHong Zhang /* Get start indices */ 31989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3199ddfdf956SHong Zhang isstart -= ncols; 32009566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3201040216a4SHong Zhang 32029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 32039566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 32049566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 32059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3206ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 32078b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3208ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 32099c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 32108b3fa1f7SHong Zhang } 32119566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 32129566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 32139566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 32148b3fa1f7SHong Zhang 32159c988bcaSHong Zhang /* Get iscol_d */ 32169566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32179566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32189566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3219feb78a15SHong Zhang 32209c988bcaSHong Zhang /* Get isrow_d */ 32219566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3222feb78a15SHong Zhang rstart = mat->rmap->rstart; 32239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32249566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32259c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32269566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3227feb78a15SHong Zhang 32289566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32299566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32309566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3231feb78a15SHong Zhang 32329c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32339566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32349566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3235ddfdf956SHong Zhang 32369566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 323707250d77SHong Zhang 32389566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32399566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 324064efcef9SHong Zhang 32419c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3242ddfdf956SHong Zhang /* off-process column indices */ 32439c988bcaSHong Zhang count = 0; 32449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3246feb78a15SHong Zhang 32479566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32489566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32498b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3250f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32519c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32521c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32531c645242SHong Zhang count++; 32548b3fa1f7SHong Zhang } 32558b3fa1f7SHong Zhang } 32569566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32579566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 325807250d77SHong Zhang 32599566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3260b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3261b6d9b4e0SHong Zhang 32629566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32639c988bcaSHong Zhang *garray = cmap1; 32649c988bcaSHong Zhang 32659566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32669566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32679566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3269040216a4SHong Zhang } 3270040216a4SHong Zhang 3271b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3272d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3273d71ae5a4SJacob Faibussowitsch { 3274b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32751fd43edeSHong Zhang Mat M = NULL; 32763b00a383SHong Zhang MPI_Comm comm; 3277b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32783b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3279c0c276a7Ssdargavi PetscInt n, count, M_size, N_size; 32803b00a383SHong Zhang 32813b00a383SHong Zhang PetscFunctionBegin; 32829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32833b00a383SHong Zhang 32843b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3285b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32869566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 328728b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32883b00a383SHong Zhang 32899566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 329028b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32913b00a383SHong Zhang 32929566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 329328b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32943b00a383SHong Zhang 3295b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3296b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32979566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32989566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 329948a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 33009566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 33019566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 33023b00a383SHong Zhang 33033b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 3304c0c276a7Ssdargavi PetscInt *garray, *garray_compact; 3305b20e2604SHong Zhang PetscInt BsubN; 33063b00a383SHong Zhang 3307b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 33089566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 33093b00a383SHong Zhang 3310b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 33119566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 33129566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 33133b00a383SHong Zhang 3314c0c276a7Ssdargavi // Compact garray so its not of size Bn 3315c0c276a7Ssdargavi PetscCall(ISGetSize(iscol_o, &count)); 3316c0c276a7Ssdargavi PetscCall(PetscMalloc1(count, &garray_compact)); 3317c0c276a7Ssdargavi PetscCall(PetscArraycpy(garray_compact, garray, count)); 3318c0c276a7Ssdargavi 33199c988bcaSHong Zhang /* Create submatrix M */ 3320c0c276a7Ssdargavi PetscCall(ISGetSize(isrow, &M_size)); 3321c0c276a7Ssdargavi PetscCall(ISGetSize(iscol, &N_size)); 3322c0c276a7Ssdargavi PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M)); 33233b00a383SHong Zhang 3324b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3325b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33267cfce09cSHong Zhang 33279566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3328b20e2604SHong Zhang n = asub->B->cmap->N; 3329b20e2604SHong Zhang if (BsubN > n) { 3330c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33317cfce09cSHong Zhang const PetscInt *idx; 33329c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33339566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33347cfce09cSHong Zhang 33359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33367cfce09cSHong Zhang j = 0; 33379566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3338b20e2604SHong Zhang for (i = 0; i < n; i++) { 33397cfce09cSHong Zhang if (j >= BsubN) break; 33409c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33417cfce09cSHong Zhang 33429c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33437cfce09cSHong Zhang idx_new[i] = idx[j++]; 334498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33457cfce09cSHong Zhang } 33469566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33477cfce09cSHong Zhang 33489566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33499566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33507cfce09cSHong Zhang 3351b20e2604SHong Zhang } else if (BsubN < n) { 335298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3353b20e2604SHong Zhang } 33547cfce09cSHong Zhang 33559566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3356b20e2604SHong Zhang *submat = M; 33573b00a383SHong Zhang 3358e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33599566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33613b00a383SHong Zhang 33629566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33643b00a383SHong Zhang 33659566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33669566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33673b00a383SHong Zhang } 33683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33693b00a383SHong Zhang } 33703b00a383SHong Zhang 3371d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3372d71ae5a4SJacob Faibussowitsch { 33731358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33743782ecc7SHong Zhang PetscInt csize; 337518e627e3SHong Zhang PetscInt n, i, j, start, end; 33764a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33773782ecc7SHong Zhang MPI_Comm comm; 33783782ecc7SHong Zhang 33793782ecc7SHong Zhang PetscFunctionBegin; 3380bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3381a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33828f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33839566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3384d5761cdaSHong Zhang if (isrow_d) { 3385d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3386d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3387d5761cdaSHong Zhang } else { 33889566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3389d5761cdaSHong Zhang if (iscol_local) { 3390d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3391d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3392d5761cdaSHong Zhang } 3393d5761cdaSHong Zhang } 33948f69fa7bSHong Zhang } else { 3395e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 339618e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33979566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33983782ecc7SHong Zhang if (!n) { 339918e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 34003782ecc7SHong Zhang } else { 34019566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 34029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3403ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 34048f69fa7bSHong Zhang } 34053782ecc7SHong Zhang 3406e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 340718e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 34089566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 340918e627e3SHong Zhang if (!n) { 341018e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 341118e627e3SHong Zhang } else { 34129566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 34139566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 341418e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 341518e627e3SHong Zhang } 341618e627e3SHong Zhang 34179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3418462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 341918e627e3SHong Zhang sameRowDist = tsameDist[0]; 342018e627e3SHong Zhang } 342118e627e3SHong Zhang 342218e627e3SHong Zhang if (sameRowDist) { 3423b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34243b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34259566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3427b20e2604SHong Zhang } else { /* sameRowDist */ 34283b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34291358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34301358a193SHong Zhang PetscBool sorted; 34319566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34329566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34339566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 343408401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34351358a193SHong Zhang 34369566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34371358a193SHong Zhang if (sorted) { 34381358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34399566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34413782ecc7SHong Zhang } 34421358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 344348c0d076SHong Zhang IS iscol_sub; 34449566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 344548c0d076SHong Zhang if (iscol_sub) { 34469566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 344848c0d076SHong Zhang } 34491358a193SHong Zhang } 34501358a193SHong Zhang } 34511358a193SHong Zhang } 34523782ecc7SHong Zhang 3453bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34543782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34559566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 345628b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34573782ecc7SHong Zhang } else { 345848a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34591358a193SHong Zhang } 34603782ecc7SHong Zhang 34619566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34629566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34638f69fa7bSHong Zhang 3464b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34659566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34669566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3467b79d0421SJed Brown } 34683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34694aa3045dSJed Brown } 34704aa3045dSJed Brown 3471feb78a15SHong Zhang /*@C 347211a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3473feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3474feb78a15SHong Zhang 3475d083f849SBarry Smith Collective 3476feb78a15SHong Zhang 3477feb78a15SHong Zhang Input Parameters: 3478feb78a15SHong Zhang + comm - MPI communicator 3479c0c276a7Ssdargavi . M - the global row size 3480c0c276a7Ssdargavi . N - the global column size 3481feb78a15SHong Zhang . A - "diagonal" portion of matrix 3482c0c276a7Ssdargavi . B - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray 3483c0c276a7Ssdargavi - garray - either `NULL` or the global index of `B` columns 3484feb78a15SHong Zhang 3485feb78a15SHong Zhang Output Parameter: 34862ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 348727430b45SBarry Smith 3488feb78a15SHong Zhang Level: advanced 3489feb78a15SHong Zhang 3490feb78a15SHong Zhang Notes: 349111a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 349211a5261eSBarry Smith 3493c0c276a7Ssdargavi `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore. 3494feb78a15SHong Zhang 34951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3496feb78a15SHong Zhang @*/ 3497c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat) 3498d71ae5a4SJacob Faibussowitsch { 3499c0c276a7Ssdargavi PetscInt m, n; 35004ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3501*f18d1d10SJunchao Zhang Mat_MPIAIJ *mpiaij; 3502*f18d1d10SJunchao Zhang Mat C; 3503feb78a15SHong Zhang 3504feb78a15SHong Zhang PetscFunctionBegin; 3505*f18d1d10SJunchao Zhang PetscCall(MatCreate(comm, &C)); 35069566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 350708401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 350858b7e2c1SStefano Zampini PetscCheck(A->rmap->bs == B->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3509feb78a15SHong Zhang 3510*f18d1d10SJunchao Zhang PetscCall(MatSetSizes(C, m, n, M, N)); 35114ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 35124ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 3513*f18d1d10SJunchao Zhang PetscCall(MatSetType(C, mpi_mat_type)); 35144ab4d6f4SRichard Tran Mills 3515*f18d1d10SJunchao Zhang PetscCall(MatSetBlockSizes(C, A->rmap->bs, A->cmap->bs)); 3516*f18d1d10SJunchao Zhang PetscCall(PetscLayoutSetUp(C->rmap)); 3517*f18d1d10SJunchao Zhang PetscCall(PetscLayoutSetUp(C->cmap)); 3518feb78a15SHong Zhang 3519*f18d1d10SJunchao Zhang mpiaij = (Mat_MPIAIJ *)C->data; 3520c0c276a7Ssdargavi mpiaij->A = A; 3521c0c276a7Ssdargavi mpiaij->B = B; 3522c0c276a7Ssdargavi mpiaij->garray = garray; 3523*f18d1d10SJunchao Zhang C->preallocated = PETSC_TRUE; 3524*f18d1d10SJunchao Zhang C->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 3525c0c276a7Ssdargavi 3526*f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3527*f18d1d10SJunchao Zhang PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3528c0c276a7Ssdargavi /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 3529c0c276a7Ssdargavi also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced 3530c0c276a7Ssdargavi */ 3531*f18d1d10SJunchao Zhang PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3532*f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 3533*f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 3534*f18d1d10SJunchao Zhang *mat = C; 35353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3536feb78a15SHong Zhang } 3537feb78a15SHong Zhang 3538ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35394aa3045dSJed Brown 3540d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3541d71ae5a4SJacob Faibussowitsch { 354298b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 354385f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 354498b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35451fd43edeSHong Zhang Mat M, Msub, B = a->B; 354698b658c4SHong Zhang MatScalar *aa; 354700e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3548a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 354998b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 355098b658c4SHong Zhang IS iscol_sub, iscmap; 355198b658c4SHong Zhang const PetscInt *is_idx, *cmap; 355218e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3553a31a438cSHong Zhang MPI_Comm comm; 35547e2c5f70SBarry Smith 3555a0ff6018SBarry Smith PetscFunctionBegin; 35569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3557d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35589566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 355928b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35609566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3561d5761cdaSHong Zhang 35629566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 356328b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3564d5761cdaSHong Zhang 35659566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 356628b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3567d5761cdaSHong Zhang 35689566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3569d5761cdaSHong Zhang 3570d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35713b00a383SHong Zhang PetscBool flg; 35723b00a383SHong Zhang 35739566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35749566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3575bcae8d28SHong Zhang 35763b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3577366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35789566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3579366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3580462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3581366a327dSHong Zhang if (allcolumns) { 3582366a327dSHong Zhang iscol_sub = iscol_local; 35839566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35849566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3585366a327dSHong Zhang 35863b00a383SHong Zhang } else { 35871358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3588244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 35909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 35919566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 35928d2139bdSHong Zhang count = 0; 3593a31a438cSHong Zhang k = 0; 3594a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3595a31a438cSHong Zhang j = is_idx[i]; 3596a31a438cSHong Zhang if (j >= cstart && j < cend) { 3597a31a438cSHong Zhang /* diagonal part of mat */ 35988d2139bdSHong Zhang idx[count] = j; 3599366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36004a3daf6eSHong Zhang } else if (Bn) { 3601a31a438cSHong Zhang /* off-diagonal part of mat */ 3602a31a438cSHong Zhang if (j == garray[k]) { 36038d2139bdSHong Zhang idx[count] = j; 3604a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3605a31a438cSHong Zhang } else if (j > garray[k]) { 3606a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3607a31a438cSHong Zhang if (j == garray[k]) { 3608a31a438cSHong Zhang idx[count] = j; 3609a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36108d2139bdSHong Zhang } 36118d2139bdSHong Zhang } 36128d2139bdSHong Zhang } 36138d2139bdSHong Zhang } 36149566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36158d2139bdSHong Zhang 36169566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36179566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36189566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3619b6d9b4e0SHong Zhang 36209566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3621a31a438cSHong Zhang } 36228b3fa1f7SHong Zhang 36233b00a383SHong Zhang /* (3) Create sequential Msub */ 36249566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3625d5761cdaSHong Zhang } 36268d2139bdSHong Zhang 36279566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 362857508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Msub->data; 362998b658c4SHong Zhang ii = aij->i; 36309566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3631a0ff6018SBarry Smith 3632a0ff6018SBarry Smith /* 3633a0ff6018SBarry Smith m - number of local rows 3634a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3635a0ff6018SBarry Smith rstart - first row in new global matrix generated 3636a0ff6018SBarry Smith */ 36379566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 363898b658c4SHong Zhang 36393b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36403b00a383SHong Zhang /* (4) Create parallel newmat */ 364198b658c4SHong Zhang PetscMPIInt rank, size; 3642bcae8d28SHong Zhang PetscInt csize; 364398b658c4SHong Zhang 36449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 364600e6dbe6SBarry Smith 3647a0ff6018SBarry Smith /* 364800e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 364900e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3650a0ff6018SBarry Smith */ 365100e6dbe6SBarry Smith 365200e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36539566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36546a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36559566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3656a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3657e2c4fddaSBarry Smith nlocal = m; 36586a6a5d1dSBarry Smith } else { 3659a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3660ab50ec6bSBarry Smith } 3661ab50ec6bSBarry Smith } else { 36626a6a5d1dSBarry Smith nlocal = csize; 36636a6a5d1dSBarry Smith } 36649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 366500e6dbe6SBarry Smith rstart = rend - nlocal; 3666aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 366700e6dbe6SBarry Smith 366800e6dbe6SBarry Smith /* next, compute all the lengths */ 366998b658c4SHong Zhang jj = aij->j; 36709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 367100e6dbe6SBarry Smith olens = dlens + m; 367200e6dbe6SBarry Smith for (i = 0; i < m; i++) { 367300e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 367400e6dbe6SBarry Smith olen = 0; 367500e6dbe6SBarry Smith dlen = 0; 367600e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 367715b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 367800e6dbe6SBarry Smith else dlen++; 367900e6dbe6SBarry Smith jj++; 368000e6dbe6SBarry Smith } 368100e6dbe6SBarry Smith olens[i] = olen; 368200e6dbe6SBarry Smith dlens[i] = dlen; 368300e6dbe6SBarry Smith } 3684b6d9b4e0SHong Zhang 36859566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36869566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 368798b658c4SHong Zhang 36889566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36899566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 36909566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 36919566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 36929566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 36939566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3694d5761cdaSHong Zhang 3695d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3696a0ff6018SBarry Smith M = *newmat; 36979566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 369808401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 36999566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3700c48de900SBarry Smith /* 3701c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3702c48de900SBarry Smith rather than the slower MatSetValues(). 3703c48de900SBarry Smith */ 3704c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3705c48de900SBarry Smith M->assembled = PETSC_FALSE; 3706a0ff6018SBarry Smith } 3707548ecf4dSHong Zhang 37083b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37109566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 371198b658c4SHong Zhang 371298b658c4SHong Zhang jj = aij->j; 37139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3714a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3715a0ff6018SBarry Smith row = rstart + i; 371600e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 371715b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37189566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37199371c9d4SSatish Balay jj += nz; 37209371c9d4SSatish Balay aa += nz; 3721a0ff6018SBarry Smith } 37229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37239566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3724a0ff6018SBarry Smith 37259566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37269566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3727fee21e36SBarry Smith 37289566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 372998b658c4SHong Zhang 373098b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3731fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37323b00a383SHong Zhang *newmat = M; 3733f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 373598b658c4SHong Zhang 3736f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 373898b658c4SHong Zhang 3739f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3741bcae8d28SHong Zhang 3742bcae8d28SHong Zhang if (iscol_local) { 3743f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37449566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3745bcae8d28SHong Zhang } 374698b658c4SHong Zhang } 37473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3748a0ff6018SBarry Smith } 3749273d9f13SBarry Smith 3750df40acb1SHong Zhang /* 3751df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3752df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3753df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3754df40acb1SHong Zhang 375511a5261eSBarry Smith This requires a sequential iscol with all indices. 3756df40acb1SHong Zhang */ 3757d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3758d71ae5a4SJacob Faibussowitsch { 3759df40acb1SHong Zhang PetscMPIInt rank, size; 3760df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3761df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3762df40acb1SHong Zhang Mat M, Mreuse; 376398b658c4SHong Zhang MatScalar *aa, *vwork; 3764df40acb1SHong Zhang MPI_Comm comm; 3765df40acb1SHong Zhang Mat_SeqAIJ *aij; 37660b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3767df40acb1SHong Zhang 3768df40acb1SHong Zhang PetscFunctionBegin; 37699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3772df40acb1SHong Zhang 37730b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37749566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37759566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37760b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3777462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37780b27a90eSHong Zhang 3779df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37809566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 378128b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37829566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3783df40acb1SHong Zhang } else { 37849566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3785df40acb1SHong Zhang } 3786df40acb1SHong Zhang 3787df40acb1SHong Zhang /* 3788df40acb1SHong Zhang m - number of local rows 3789df40acb1SHong Zhang n - number of columns (same on all processors) 3790df40acb1SHong Zhang rstart - first row in new global matrix generated 3791df40acb1SHong Zhang */ 37929566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 37939566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3794df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 379557508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3796df40acb1SHong Zhang ii = aij->i; 3797df40acb1SHong Zhang jj = aij->j; 3798df40acb1SHong Zhang 3799df40acb1SHong Zhang /* 3800df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3801df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3802df40acb1SHong Zhang */ 3803df40acb1SHong Zhang 3804df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3805df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38069566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3807df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3808df40acb1SHong Zhang nlocal = m; 3809df40acb1SHong Zhang } else { 3810df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3811df40acb1SHong Zhang } 3812df40acb1SHong Zhang } else { 3813df40acb1SHong Zhang nlocal = csize; 3814df40acb1SHong Zhang } 38159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3816df40acb1SHong Zhang rstart = rend - nlocal; 3817aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3818df40acb1SHong Zhang 3819df40acb1SHong Zhang /* next, compute all the lengths */ 38209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3821df40acb1SHong Zhang olens = dlens + m; 3822df40acb1SHong Zhang for (i = 0; i < m; i++) { 3823df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3824df40acb1SHong Zhang olen = 0; 3825df40acb1SHong Zhang dlen = 0; 3826df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3827df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3828df40acb1SHong Zhang else dlen++; 3829df40acb1SHong Zhang jj++; 3830df40acb1SHong Zhang } 3831df40acb1SHong Zhang olens[i] = olen; 3832df40acb1SHong Zhang dlens[i] = dlen; 3833df40acb1SHong Zhang } 38349566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38369566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38379566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38389566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38399566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3840df40acb1SHong Zhang } else { 3841df40acb1SHong Zhang PetscInt ml, nl; 3842df40acb1SHong Zhang 3843df40acb1SHong Zhang M = *newmat; 38449566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 384508401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3847df40acb1SHong Zhang /* 3848df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3849df40acb1SHong Zhang rather than the slower MatSetValues(). 3850df40acb1SHong Zhang */ 3851df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3852df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3853df40acb1SHong Zhang } 38549566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 385557508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3856df40acb1SHong Zhang ii = aij->i; 3857df40acb1SHong Zhang jj = aij->j; 38582e5835c6SStefano Zampini 38592e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3861df40acb1SHong Zhang for (i = 0; i < m; i++) { 3862df40acb1SHong Zhang row = rstart + i; 3863df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38649371c9d4SSatish Balay cwork = jj; 38658e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38669371c9d4SSatish Balay vwork = aa; 38678e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38689566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3869df40acb1SHong Zhang } 38709566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3871df40acb1SHong Zhang 38729566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38739566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3874df40acb1SHong Zhang *newmat = M; 3875df40acb1SHong Zhang 3876df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3877df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38789566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38799566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3880df40acb1SHong Zhang } 38813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3882df40acb1SHong Zhang } 3883df40acb1SHong Zhang 3884ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3885d71ae5a4SJacob Faibussowitsch { 38866a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 38879f0612e4SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart; 3888ccd8e176SBarry Smith const PetscInt *JJ; 3889eeb24464SBarry Smith PetscBool nooffprocentries; 38906a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3891ccd8e176SBarry Smith 3892ccd8e176SBarry Smith PetscFunctionBegin; 38939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 38949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3895d0f46423SBarry Smith m = B->rmap->n; 3896d0f46423SBarry Smith cstart = B->cmap->rstart; 3897d0f46423SBarry Smith cend = B->cmap->rend; 3898d0f46423SBarry Smith rstart = B->rmap->rstart; 38999f0612e4SBarry Smith irstart = Ii[0]; 3900899cda47SBarry Smith 39019566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3902ccd8e176SBarry Smith 390376bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39048f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3905ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39069f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 390708401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 390808401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 390908401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3910ecc77c7aSBarry Smith } 391176bd3646SJed Brown } 3912ecc77c7aSBarry Smith 39138f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3914b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39159f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 3916ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3917ccd8e176SBarry Smith d = 0; 39180daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39190daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3920ccd8e176SBarry Smith } 3921ccd8e176SBarry Smith d_nnz[i] = d; 3922ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3923ccd8e176SBarry Smith } 39249566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39259566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3926ccd8e176SBarry Smith 39278f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3928ccd8e176SBarry Smith ii = i + rstart; 39299f0612e4SBarry Smith PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES)); 3930ccd8e176SBarry Smith } 3931eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3932eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3935eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3936ccd8e176SBarry Smith 39376a3d2595SBarry Smith /* count number of entries below block diagonal */ 39386a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39396a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39406a3d2595SBarry Smith Aij->ld = ld; 39416a3d2595SBarry Smith for (i = 0; i < m; i++) { 39426a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39436a3d2595SBarry Smith j = 0; 3944ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39456a3d2595SBarry Smith ld[i] = j; 3946720a2405SPierre Jolivet if (J) J += nnz; 39476a3d2595SBarry Smith } 39486a3d2595SBarry Smith 39499566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3951ccd8e176SBarry Smith } 3952ccd8e176SBarry Smith 39531eea217eSSatish Balay /*@ 395411a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3955ccd8e176SBarry Smith (the default parallel PETSc format). 3956ccd8e176SBarry Smith 3957d083f849SBarry Smith Collective 3958ccd8e176SBarry Smith 3959ccd8e176SBarry Smith Input Parameters: 3960a1661176SMatthew Knepley + B - the matrix 3961d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3962d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3963ccd8e176SBarry Smith - v - optional values in the matrix 3964ccd8e176SBarry Smith 3965ccd8e176SBarry Smith Level: developer 3966ccd8e176SBarry Smith 396712251496SSatish Balay Notes: 39682ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39692ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 397011a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 397112251496SSatish Balay 39722ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 397312251496SSatish Balay 3974a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3975a4bd8bc0SBarry Smith 3976a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3977a4bd8bc0SBarry Smith 3978a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3979a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3980a4bd8bc0SBarry Smith 398112251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 398212251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3983c5e4d11fSDmitry Karpeev as shown 398427430b45SBarry Smith .vb 398527430b45SBarry Smith 1 0 0 398627430b45SBarry Smith 2 0 3 P0 398727430b45SBarry Smith ------- 398827430b45SBarry Smith 4 5 6 P1 398927430b45SBarry Smith 399027430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 399127430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 399227430b45SBarry Smith j = {0,0,2} [size = 3] 399327430b45SBarry Smith v = {1,2,3} [size = 3] 399427430b45SBarry Smith 399527430b45SBarry Smith Process1 [P1] rows_owned=[2] 399627430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 399727430b45SBarry Smith j = {0,1,2} [size = 3] 399827430b45SBarry Smith v = {4,5,6} [size = 3] 399927430b45SBarry Smith .ve 400012251496SSatish Balay 4001fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4002a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4003ccd8e176SBarry Smith @*/ 4004d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4005d71ae5a4SJacob Faibussowitsch { 4006ccd8e176SBarry Smith PetscFunctionBegin; 4007cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4009ccd8e176SBarry Smith } 4010ccd8e176SBarry Smith 40115d83a8b1SBarry Smith /*@ 401211a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4013273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4014273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 401520f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4016273d9f13SBarry Smith 4017d083f849SBarry Smith Collective 4018273d9f13SBarry Smith 4019273d9f13SBarry Smith Input Parameters: 40201c4f3114SJed Brown + B - the matrix 4021273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4022273d9f13SBarry Smith (same value is used for all local rows) 4023273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4024273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40252ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4026273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40273287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40283287b5eaSJed Brown the diagonal entry even if it is zero. 4029273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4030273d9f13SBarry Smith submatrix (same value is used for all local rows). 4031273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4032273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40332ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4034273d9f13SBarry Smith structure. The size of this array is equal to the number 4035273d9f13SBarry Smith of local rows, i.e 'm'. 4036273d9f13SBarry Smith 40372920cce0SJacob Faibussowitsch Example Usage: 403827430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 403927430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 404027430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 404127430b45SBarry Smith as follows 404227430b45SBarry Smith 404327430b45SBarry Smith .vb 404427430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 404527430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 404627430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 404727430b45SBarry Smith ------------------------------------- 404827430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 404927430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 405027430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 405127430b45SBarry Smith ------------------------------------- 405227430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 405327430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 405427430b45SBarry Smith .ve 405527430b45SBarry Smith 405627430b45SBarry Smith This can be represented as a collection of submatrices as 405727430b45SBarry Smith .vb 405827430b45SBarry Smith A B C 405927430b45SBarry Smith D E F 406027430b45SBarry Smith G H I 406127430b45SBarry Smith .ve 406227430b45SBarry Smith 406327430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 406427430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 406527430b45SBarry Smith 406627430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 406727430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 406827430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 406927430b45SBarry Smith 407027430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 407127430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 407227430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 407327430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 407427430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 40755163b989SNuno Nobre matrix, and [DF] as another `MATSEQAIJ` matrix. 407627430b45SBarry Smith 407720f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 40785163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 40795163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 40805163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 40815163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 408220f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 408327430b45SBarry Smith .vb 408427430b45SBarry Smith proc0 dnz = 2, o_nz = 2 408527430b45SBarry Smith proc1 dnz = 3, o_nz = 2 408627430b45SBarry Smith proc2 dnz = 1, o_nz = 4 408727430b45SBarry Smith .ve 408820f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 408927430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 409027430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 409127430b45SBarry Smith 34 values. 409227430b45SBarry Smith 409320f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 409427430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 409520f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 409627430b45SBarry Smith .vb 409727430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 409827430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 409927430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 410027430b45SBarry Smith .ve 410127430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 410227430b45SBarry Smith hence pre-allocation is perfect. 410327430b45SBarry Smith 410427430b45SBarry Smith Level: intermediate 410527430b45SBarry Smith 410627430b45SBarry Smith Notes: 410749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 410849a6f317SBarry Smith 410927430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41100598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4111651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4112273d9f13SBarry Smith 4113273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4114273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4115273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4116273d9f13SBarry Smith 4117273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4118a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4119a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4120a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4121a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4122a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4123a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4124a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4125a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4126273d9f13SBarry Smith 41272ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4128273d9f13SBarry Smith 412927430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4130aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 413127430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4132aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4133aa95bbe8SBarry Smith 41341cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4135a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4136273d9f13SBarry Smith @*/ 4137d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4138d71ae5a4SJacob Faibussowitsch { 4139273d9f13SBarry Smith PetscFunctionBegin; 41406ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41416ba663aaSJed Brown PetscValidType(B, 1); 4142cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4144273d9f13SBarry Smith } 4145273d9f13SBarry Smith 414658d36128SBarry Smith /*@ 414711a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41488f8f2f0dSBarry Smith CSR format for the local rows. 41492fb0ec9aSBarry Smith 4150d083f849SBarry Smith Collective 41512fb0ec9aSBarry Smith 41522fb0ec9aSBarry Smith Input Parameters: 41532fb0ec9aSBarry Smith + comm - MPI communicator 415411a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41552fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4156d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4157d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4158d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4159d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41605693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41615693b835SJunchao Zhang . j - global column indices 4162f1f2ae84SBarry Smith - a - optional matrix values 41632fb0ec9aSBarry Smith 41642fb0ec9aSBarry Smith Output Parameter: 41652fb0ec9aSBarry Smith . mat - the matrix 416603bfb495SBarry Smith 41672fb0ec9aSBarry Smith Level: intermediate 41682fb0ec9aSBarry Smith 41692fb0ec9aSBarry Smith Notes: 41702ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4171d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4172d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41732fb0ec9aSBarry Smith 41742ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 417512251496SSatish Balay 41765693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4177a4bd8bc0SBarry Smith 41785693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4179a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4180a4bd8bc0SBarry Smith 418112251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4182d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4183c5e4d11fSDmitry Karpeev as shown 41842ef1f0ffSBarry Smith .vb 41852ef1f0ffSBarry Smith 1 0 0 41862ef1f0ffSBarry Smith 2 0 3 P0 41872ef1f0ffSBarry Smith ------- 41882ef1f0ffSBarry Smith 4 5 6 P1 41898f8f2f0dSBarry Smith 41902ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 41912ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 41922ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 41932ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 41942fb0ec9aSBarry Smith 41952ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 41962ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 41972ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 41982ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 41992ef1f0ffSBarry Smith .ve 42002ef1f0ffSBarry Smith 4201d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42025693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42032fb0ec9aSBarry Smith @*/ 4204d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4205d71ae5a4SJacob Faibussowitsch { 42062fb0ec9aSBarry Smith PetscFunctionBegin; 420708401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 420808401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42099566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42109566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42119566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42129566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42139566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42152fb0ec9aSBarry Smith } 42162fb0ec9aSBarry Smith 42178f8f2f0dSBarry Smith /*@ 421811a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42192ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42202ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42216a3d2595SBarry Smith 42226a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42238f8f2f0dSBarry Smith 42248f8f2f0dSBarry Smith Collective 42258f8f2f0dSBarry Smith 42268f8f2f0dSBarry Smith Input Parameters: 42278f8f2f0dSBarry Smith + mat - the matrix 422811a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42298f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 423011a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42318f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 423211a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 423311a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42348f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42358f8f2f0dSBarry Smith . J - column indices 42368f8f2f0dSBarry Smith - v - matrix values 42378f8f2f0dSBarry Smith 42382ef1f0ffSBarry Smith Level: deprecated 42398f8f2f0dSBarry Smith 42401cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4241a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42428f8f2f0dSBarry Smith @*/ 4243d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4244d71ae5a4SJacob Faibussowitsch { 42456a3d2595SBarry Smith PetscInt nnz, i; 42468f8f2f0dSBarry Smith PetscBool nooffprocentries; 42478f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4248fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4249fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42508f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42516a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42526a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42538f8f2f0dSBarry Smith 42548f8f2f0dSBarry Smith PetscFunctionBegin; 4255aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 425608401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 425708401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 425808401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42598f8f2f0dSBarry Smith 42609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42619566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42628f8f2f0dSBarry Smith 42638f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42644c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42654c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42664c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42674c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42684c17f1ccSBarry Smith } 42694c17f1ccSBarry Smith } 42708f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42718f8f2f0dSBarry Smith Iii = Ii[i]; 42728f8f2f0dSBarry Smith ldi = ld[i]; 42738f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42749566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42759566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42769566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42778f8f2f0dSBarry Smith ad += md; 42788f8f2f0dSBarry Smith ao += nnz - md; 42798f8f2f0dSBarry Smith } 42808f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42818f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42829566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42849566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42859566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42869566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42879566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42889566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42898f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 42903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42918f8f2f0dSBarry Smith } 42928f8f2f0dSBarry Smith 42936a3d2595SBarry Smith /*@ 429411a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 42956a3d2595SBarry Smith 42966a3d2595SBarry Smith Collective 42976a3d2595SBarry Smith 42986a3d2595SBarry Smith Input Parameters: 42996a3d2595SBarry Smith + mat - the matrix 43006a3d2595SBarry Smith - v - matrix values, stored by row 43016a3d2595SBarry Smith 43026a3d2595SBarry Smith Level: intermediate 43036a3d2595SBarry Smith 4304a4bd8bc0SBarry Smith Notes: 43056a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43066a3d2595SBarry Smith 4307a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4308a4bd8bc0SBarry Smith 43091cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4310a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43116a3d2595SBarry Smith @*/ 4312d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4313d71ae5a4SJacob Faibussowitsch { 43146a3d2595SBarry Smith PetscInt nnz, i, m; 43156a3d2595SBarry Smith PetscBool nooffprocentries; 43166a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43176a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43186a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43196a3d2595SBarry Smith PetscScalar *ad, *ao; 43206a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43216a3d2595SBarry Smith PetscInt ldi, Iii, md; 43226a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43236a3d2595SBarry Smith 43246a3d2595SBarry Smith PetscFunctionBegin; 43256a3d2595SBarry Smith m = mat->rmap->n; 43266a3d2595SBarry Smith 43276a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43286a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43296a3d2595SBarry Smith Iii = 0; 43306a3d2595SBarry Smith for (i = 0; i < m; i++) { 43316a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43326a3d2595SBarry Smith ldi = ld[i]; 43336a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43346a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43356a3d2595SBarry Smith ad += md; 4336810441c8SPierre Jolivet if (ao) { 4337810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4338810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43396a3d2595SBarry Smith ao += nnz - md; 4340810441c8SPierre Jolivet } 43416a3d2595SBarry Smith Iii += nnz; 43426a3d2595SBarry Smith } 43436a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43446a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43456a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43466a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43476a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43486a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43496a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43506a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43516a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43526a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43546a3d2595SBarry Smith } 43556a3d2595SBarry Smith 43565d83a8b1SBarry Smith /*@ 435711a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4358273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4359273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43602ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4361273d9f13SBarry Smith 4362d083f849SBarry Smith Collective 4363273d9f13SBarry Smith 4364273d9f13SBarry Smith Input Parameters: 4365273d9f13SBarry Smith + comm - MPI communicator 436611a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4367273d9f13SBarry Smith This value should be the same as the local size used in creating the 4368273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4369273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 437045f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4371273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 437211a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 437311a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4374273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4375273d9f13SBarry Smith (same value is used for all local rows) 4376273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4377273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43782ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4379273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4380273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4381273d9f13SBarry Smith submatrix (same value is used for all local rows). 4382273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4383273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43842ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4385273d9f13SBarry Smith structure. The size of this array is equal to the number 4386273d9f13SBarry Smith of local rows, i.e 'm'. 4387273d9f13SBarry Smith 4388273d9f13SBarry Smith Output Parameter: 4389273d9f13SBarry Smith . A - the matrix 4390273d9f13SBarry Smith 439127430b45SBarry Smith Options Database Keys: 439227430b45SBarry Smith + -mat_no_inode - Do not use inodes 439327430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 439427430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4395727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4396727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 439727430b45SBarry Smith 43982ef1f0ffSBarry Smith Level: intermediate 43992ef1f0ffSBarry Smith 440027430b45SBarry Smith Notes: 440177433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4402f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 440311a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4404175b88e8SBarry Smith 440549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 440649a6f317SBarry Smith 44072ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44082ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4409273d9f13SBarry Smith storage requirements for this matrix. 4410273d9f13SBarry Smith 441111a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4412273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4413273d9f13SBarry Smith that argument. 4414273d9f13SBarry Smith 4415727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4416727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4417727bdf9bSBarry Smith 4418273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4419273d9f13SBarry Smith (possibly both). 4420273d9f13SBarry Smith 442133a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4422727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4423727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4424727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 442533a7c187SSatish Balay values corresponding to [m x N] submatrix. 4426273d9f13SBarry Smith 442733a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 442833a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4429df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 443033a7c187SSatish Balay 443133a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 443233a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 443333a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 443433a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 443533a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 443633a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 44370b4b7b1cSBarry Smith illustrates this concept. The two matrices, the DIAGONAL portion and 44380b4b7b1cSBarry Smith the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices. 443933a7c187SSatish Balay 444033a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 444133a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 444233a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 444333a7c187SSatish Balay local matrix (a rectangular submatrix). 4444273d9f13SBarry Smith 44452ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4446273d9f13SBarry Smith 444797d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44482ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4449da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4450da57b5cdSKarl Rupp .vb 44512ef1f0ffSBarry Smith MatCreate(..., &A); 44522ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44532ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44542ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4455da57b5cdSKarl Rupp .ve 445697d05335SKris Buschelman 4457273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4458273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4459273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4460273d9f13SBarry Smith 44612920cce0SJacob Faibussowitsch Example Usage: 4462273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4463273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4464273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4465efc377ccSKarl Rupp as follows 4466273d9f13SBarry Smith 4467273d9f13SBarry Smith .vb 4468273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4469273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4470273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4471273d9f13SBarry Smith ------------------------------------- 4472273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4473273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4474273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4475273d9f13SBarry Smith ------------------------------------- 4476273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4477273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4478273d9f13SBarry Smith .ve 4479273d9f13SBarry Smith 4480da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4481273d9f13SBarry Smith 4482273d9f13SBarry Smith .vb 4483273d9f13SBarry Smith A B C 4484273d9f13SBarry Smith D E F 4485273d9f13SBarry Smith G H I 4486273d9f13SBarry Smith .ve 4487273d9f13SBarry Smith 4488273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4489273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4490273d9f13SBarry Smith 4491273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4492273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4493273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4494273d9f13SBarry Smith 4495273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4496273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4497273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4498273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 449927430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 45005163b989SNuno Nobre matrix, and [DF] as another SeqAIJ matrix. 4501273d9f13SBarry Smith 45022ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45035163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 45045163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 45055163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 45065163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45072ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4508273d9f13SBarry Smith .vb 450927430b45SBarry Smith proc0 dnz = 2, o_nz = 2 451027430b45SBarry Smith proc1 dnz = 3, o_nz = 2 451127430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4512273d9f13SBarry Smith .ve 45132ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4514273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4515273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4516273d9f13SBarry Smith 34 values. 4517273d9f13SBarry Smith 45182ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4519a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4520da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4521273d9f13SBarry Smith .vb 452227430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 452327430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 452427430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4525273d9f13SBarry Smith .ve 4526273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4527273d9f13SBarry Smith hence pre-allocation is perfect. 4528273d9f13SBarry Smith 45291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4530727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4531727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4532273d9f13SBarry Smith @*/ 4533d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4534d71ae5a4SJacob Faibussowitsch { 4535b1d57f15SBarry Smith PetscMPIInt size; 4536273d9f13SBarry Smith 4537273d9f13SBarry Smith PetscFunctionBegin; 45389566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45399566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4541273d9f13SBarry Smith if (size > 1) { 45429566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45439566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4544273d9f13SBarry Smith } else { 45459566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4547273d9f13SBarry Smith } 45483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4549273d9f13SBarry Smith } 4550195d93cdSBarry Smith 4551127ca0efSMatthew Knepley /*@C 45520ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4553127ca0efSMatthew Knepley 45542ef1f0ffSBarry Smith Not Collective 4555127ca0efSMatthew Knepley 4556127ca0efSMatthew Knepley Input Parameter: 455711a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4558127ca0efSMatthew Knepley 4559127ca0efSMatthew Knepley Output Parameters: 456011a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 456111a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 45622ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4563127ca0efSMatthew Knepley 45640ab4885dSBarry Smith Level: intermediate 45650ab4885dSBarry Smith 456611a5261eSBarry Smith Note: 45672ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 45682ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 45692ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4570127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4571127ca0efSMatthew Knepley 4572ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4573127ca0efSMatthew Knepley @*/ 4574d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4575d71ae5a4SJacob Faibussowitsch { 4576195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 457704cf37c7SBarry Smith PetscBool flg; 4578b1d57f15SBarry Smith 4579195d93cdSBarry Smith PetscFunctionBegin; 45809566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 458128b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 458221e72a00SBarry Smith if (Ad) *Ad = a->A; 458321e72a00SBarry Smith if (Ao) *Ao = a->B; 458421e72a00SBarry Smith if (colmap) *colmap = a->garray; 45853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4586195d93cdSBarry Smith } 4587a2243be0SBarry Smith 4588d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4589d71ae5a4SJacob Faibussowitsch { 4590110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 45919b8102ccSHong Zhang PetscInt *indx; 4592110bb6e1SHong Zhang PetscScalar *values; 4593421ddf4dSJunchao Zhang MatType rootType; 45949b8102ccSHong Zhang 45959b8102ccSHong Zhang PetscFunctionBegin; 45969566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4597110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4598110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4599110bb6e1SHong Zhang 460048a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4601a22543b6SHong Zhang /* Check sum(n) = N */ 4602462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 460308401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4604a22543b6SHong Zhang 46059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46069b8102ccSHong Zhang rstart -= m; 46079b8102ccSHong Zhang 4608d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46099b8102ccSHong Zhang for (i = 0; i < m; i++) { 46109566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46119566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46129566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46139b8102ccSHong Zhang } 46149b8102ccSHong Zhang 46159566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46169566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46179566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46189566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46199566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46209566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46229566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4623d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46249566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46259b8102ccSHong Zhang } 46269b8102ccSHong Zhang 4627110bb6e1SHong Zhang /* numeric phase */ 46289566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46299b8102ccSHong Zhang for (i = 0; i < m; i++) { 46309566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46319b8102ccSHong Zhang Ii = i + rstart; 46329566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46339566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46349b8102ccSHong Zhang } 46359566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46369566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4638c5d6d63eSBarry Smith } 4639c5d6d63eSBarry Smith 464049abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data) 4641d71ae5a4SJacob Faibussowitsch { 464249abdd8aSBarry Smith Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data; 464351a7d1a8SHong Zhang 464451a7d1a8SHong Zhang PetscFunctionBegin; 46453ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46469566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46479566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 46489566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 46499566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 46509566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 46519566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 46529566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 46539566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 46549566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 46559566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 46569566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 46579566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 46589566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 46599566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 46603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 466151a7d1a8SHong Zhang } 466251a7d1a8SHong Zhang 4663c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4664c6db04a5SJed Brown #include <petscbt.h> 46654ebed01fSBarry Smith 4666d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4667d71ae5a4SJacob Faibussowitsch { 4668ce94432eSBarry Smith MPI_Comm comm; 466955d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4670b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 46716497c311SBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m; 46726497c311SBarry Smith PetscMPIInt proc, k; 4673b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 46746497c311SBarry Smith PetscInt anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4675b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 467655d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 467755d1abb9SHong Zhang MPI_Status *status; 4678fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4679dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 468055d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4681776b82aeSLisandro Dalcin PetscContainer container; 468255d1abb9SHong Zhang 468355d1abb9SHong Zhang PetscFunctionBegin; 46849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 46859566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 46863c2c1871SHong Zhang 46879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 46889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 468955d1abb9SHong Zhang 46909566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 469128b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 46929566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 46939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4694fff043a9SJunchao Zhang aa = a_a; 4695bf0cc555SLisandro Dalcin 469655d1abb9SHong Zhang bi = merge->bi; 469755d1abb9SHong Zhang bj = merge->bj; 469855d1abb9SHong Zhang buf_ri = merge->buf_ri; 469955d1abb9SHong Zhang buf_rj = merge->buf_rj; 470055d1abb9SHong Zhang 47019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47027a2fc3feSBarry Smith owners = merge->rowmap->range; 470355d1abb9SHong Zhang len_s = merge->len_s; 470455d1abb9SHong Zhang 470555d1abb9SHong Zhang /* send and recv matrix values */ 47069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47079566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 470855d1abb9SHong Zhang 47099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 471055d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 471155d1abb9SHong Zhang if (!len_s[proc]) continue; 471255d1abb9SHong Zhang i = owners[proc]; 47136497c311SBarry Smith PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 471455d1abb9SHong Zhang k++; 471555d1abb9SHong Zhang } 471655d1abb9SHong Zhang 47179566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47189566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47199566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 472055d1abb9SHong Zhang 47219566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47229566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 472355d1abb9SHong Zhang 472455d1abb9SHong Zhang /* insert mat values of mpimat */ 47259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47269566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 472755d1abb9SHong Zhang 472855d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 472955d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4730f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 473155d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4732a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 473355d1abb9SHong Zhang } 473455d1abb9SHong Zhang 473555d1abb9SHong Zhang /* set values of ba */ 47367a2fc3feSBarry Smith m = merge->rowmap->n; 473755d1abb9SHong Zhang for (i = 0; i < m; i++) { 473855d1abb9SHong Zhang arow = owners[rank] + i; 473955d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 474055d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47419566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 474255d1abb9SHong Zhang 474355d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 474455d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 474555d1abb9SHong Zhang aj = a->j + ai[arow]; 4746fff043a9SJunchao Zhang aa = a_a + ai[arow]; 474755d1abb9SHong Zhang nextaj = 0; 474855d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 474955d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 475055d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 475155d1abb9SHong Zhang } 475255d1abb9SHong Zhang } 475355d1abb9SHong Zhang 475455d1abb9SHong Zhang /* add received vals into ba */ 475555d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 475655d1abb9SHong Zhang /* i-th row */ 475755d1abb9SHong Zhang if (i == *nextrow[k]) { 475855d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4759f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4760f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 476155d1abb9SHong Zhang nextaj = 0; 476255d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 476355d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 476455d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 476555d1abb9SHong Zhang } 476655d1abb9SHong Zhang } 47679371c9d4SSatish Balay nextrow[k]++; 47689371c9d4SSatish Balay nextai[k]++; 476955d1abb9SHong Zhang } 477055d1abb9SHong Zhang } 47719566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 477255d1abb9SHong Zhang } 47739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 47749566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 47759566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 477655d1abb9SHong Zhang 47779566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 47789566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 47799566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 47809566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 47819566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 478355d1abb9SHong Zhang } 478438f152feSBarry Smith 4785d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4786d71ae5a4SJacob Faibussowitsch { 478755a3bba9SHong Zhang Mat B_mpi; 4788c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4789b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4790b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4791d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 47926497c311SBarry Smith PetscInt len, *dnz, *onz, bs, cbs; 4793c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4794b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 479555d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 479658cb9c82SHong Zhang MPI_Status *status; 47970298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4798be0fcf8dSHong Zhang PetscBT lnkbt; 479951a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4800776b82aeSLisandro Dalcin PetscContainer container; 480102c68681SHong Zhang 4802e5f2cdd8SHong Zhang PetscFunctionBegin; 48039566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48043c2c1871SHong Zhang 480538f152feSBarry Smith /* make sure it is a PETSc comm */ 48069566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 480955d1abb9SHong Zhang 48109566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4812e5f2cdd8SHong Zhang 48136abd8857SHong Zhang /* determine row ownership */ 48149566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48159566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48169566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48179566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48189566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 482155d1abb9SHong Zhang 48227a2fc3feSBarry Smith m = merge->rowmap->n; 48237a2fc3feSBarry Smith owners = merge->rowmap->range; 48246abd8857SHong Zhang 48256abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48263e06a4e6SHong Zhang len_s = merge->len_s; 482751a7d1a8SHong Zhang 48282257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4829c2234fe3SHong Zhang merge->nsend = 0; 48306497c311SBarry Smith for (PetscMPIInt proc = 0; proc < size; proc++) { 48312257cef7SHong Zhang len_si[proc] = 0; 48323e06a4e6SHong Zhang if (proc == rank) { 48336abd8857SHong Zhang len_s[proc] = 0; 48343e06a4e6SHong Zhang } else { 48356497c311SBarry Smith PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc])); 48366497c311SBarry Smith PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */ 48373e06a4e6SHong Zhang } 48383e06a4e6SHong Zhang if (len_s[proc]) { 4839c2234fe3SHong Zhang merge->nsend++; 48402257cef7SHong Zhang nrows = 0; 48412257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48422257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48432257cef7SHong Zhang } 48446497c311SBarry Smith PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc])); 48452257cef7SHong Zhang len += len_si[proc]; 4846409913e3SHong Zhang } 484758cb9c82SHong Zhang } 4848409913e3SHong Zhang 48492257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 48509566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 48519566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4852671beff6SHong Zhang 48533e06a4e6SHong Zhang /* post the Irecv of j-structure */ 48549566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 48559566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 485602c68681SHong Zhang 48573e06a4e6SHong Zhang /* post the Isend of j-structure */ 48589566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 48593e06a4e6SHong Zhang 48606497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 4861409913e3SHong Zhang if (!len_s[proc]) continue; 486202c68681SHong Zhang i = owners[proc]; 48636497c311SBarry Smith PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 486451a7d1a8SHong Zhang k++; 486551a7d1a8SHong Zhang } 486651a7d1a8SHong Zhang 48673e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 48689566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 48699566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 487002c68681SHong Zhang 487102c68681SHong Zhang /* send and recv i-structure */ 48729566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 48739566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 487402c68681SHong Zhang 48759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 48763e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 48776497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 487802c68681SHong Zhang if (!len_s[proc]) continue; 48793e06a4e6SHong Zhang /* form outgoing message for i-structure: 48803e06a4e6SHong Zhang buf_si[0]: nrows to be sent 48813e06a4e6SHong Zhang [1:nrows]: row index (global) 48823e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 48833e06a4e6SHong Zhang */ 48842257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 48853e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 48863e06a4e6SHong Zhang buf_si[0] = nrows; 48873e06a4e6SHong Zhang buf_si_i[0] = 0; 48883e06a4e6SHong Zhang nrows = 0; 48893e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48903e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 48913e06a4e6SHong Zhang if (anzi) { 48923e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 48933e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 48943e06a4e6SHong Zhang nrows++; 48953e06a4e6SHong Zhang } 48963e06a4e6SHong Zhang } 48976497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 489802c68681SHong Zhang k++; 48992257cef7SHong Zhang buf_si += len_si[proc]; 490002c68681SHong Zhang } 49012257cef7SHong Zhang 49029566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49039566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 490402c68681SHong Zhang 49059566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 490648a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49073e06a4e6SHong Zhang 49089566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49099566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49109566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49119566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49129566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49139566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49149566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 491558cb9c82SHong Zhang 4916bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 491758cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 491958cb9c82SHong Zhang bi[0] = 0; 492058cb9c82SHong Zhang 4921be0fcf8dSHong Zhang /* create and initialize a linked list */ 4922be0fcf8dSHong Zhang nlnk = N + 1; 49239566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 492458cb9c82SHong Zhang 4925bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4926bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49279566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49282205254eSKarl Rupp 492958cb9c82SHong Zhang current_space = free_space; 493058cb9c82SHong Zhang 4931bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49329566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49331d79065fSBarry Smith 49343e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49352257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49363e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49373e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4938a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49393e06a4e6SHong Zhang } 49402257cef7SHong Zhang 4941d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4942bcc1bcd5SHong Zhang len = 0; 494358cb9c82SHong Zhang for (i = 0; i < m; i++) { 494458cb9c82SHong Zhang bnzi = 0; 494558cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 494658cb9c82SHong Zhang arow = owners[rank] + i; 494758cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 494858cb9c82SHong Zhang aj = a->j + ai[arow]; 49499566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 495058cb9c82SHong Zhang bnzi += nlnk; 495158cb9c82SHong Zhang /* add received col data into lnk */ 495251a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 495355d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 49543e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 49553e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 49569566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 49573e06a4e6SHong Zhang bnzi += nlnk; 49589371c9d4SSatish Balay nextrow[k]++; 49599371c9d4SSatish Balay nextai[k]++; 49603e06a4e6SHong Zhang } 496158cb9c82SHong Zhang } 4962bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 496358cb9c82SHong Zhang 496458cb9c82SHong Zhang /* if free space is not available, make more free space */ 496548a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 496658cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 49679566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 49689566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 4969bcc1bcd5SHong Zhang 497058cb9c82SHong Zhang current_space->array += bnzi; 497158cb9c82SHong Zhang current_space->local_used += bnzi; 497258cb9c82SHong Zhang current_space->local_remaining -= bnzi; 497358cb9c82SHong Zhang 497458cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 497558cb9c82SHong Zhang } 4976bcc1bcd5SHong Zhang 49779566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 4978bcc1bcd5SHong Zhang 49799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 49809566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 49819566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 4982409913e3SHong Zhang 4983bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 49849566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 49859566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 498654b84b50SHong Zhang if (n == PETSC_DECIDE) { 49879566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 498854b84b50SHong Zhang } else { 49899566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 499054b84b50SHong Zhang } 49919566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 49929566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 49939566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 4994d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 49959566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 499658cb9c82SHong Zhang 499790431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 49986abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 4999affca5deSHong Zhang merge->bi = bi; 5000affca5deSHong Zhang merge->bj = bj; 500102c68681SHong Zhang merge->buf_ri = buf_ri; 500202c68681SHong Zhang merge->buf_rj = buf_rj; 50030298fd71SBarry Smith merge->coi = NULL; 50040298fd71SBarry Smith merge->coj = NULL; 50050298fd71SBarry Smith merge->owners_co = NULL; 5006affca5deSHong Zhang 50079566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5008bf0cc555SLisandro Dalcin 5009affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50109566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50119566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 501249abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50139566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50149566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5015affca5deSHong Zhang *mpimat = B_mpi; 501638f152feSBarry Smith 50179566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5019e5f2cdd8SHong Zhang } 502025616d81SHong Zhang 5021cc4c1da9SBarry Smith /*@ 502211a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5023d4036a1aSHong Zhang matrices from each processor 5024d4036a1aSHong Zhang 5025d083f849SBarry Smith Collective 5026d4036a1aSHong Zhang 5027d4036a1aSHong Zhang Input Parameters: 5028d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5029d4036a1aSHong Zhang . seqmat - the input sequential matrices 503011a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 503111a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 503211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5033d4036a1aSHong Zhang 5034d4036a1aSHong Zhang Output Parameter: 5035d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5036d4036a1aSHong Zhang 5037d4036a1aSHong Zhang Level: advanced 5038d4036a1aSHong Zhang 503911a5261eSBarry Smith Note: 5040d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5041d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5042b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 50432ef1f0ffSBarry Smith 50441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5045d4036a1aSHong Zhang @*/ 5046d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5047d71ae5a4SJacob Faibussowitsch { 50487e63b356SHong Zhang PetscMPIInt size; 504955d1abb9SHong Zhang 505055d1abb9SHong Zhang PetscFunctionBegin; 50519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 50527e63b356SHong Zhang if (size == 1) { 50539566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 50547e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 50559566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 50567e63b356SHong Zhang } else { 50579566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 50587e63b356SHong Zhang } 50599566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 50603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50617e63b356SHong Zhang } 50629566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 506348a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 50649566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 50659566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 50663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 506755d1abb9SHong Zhang } 50684ebed01fSBarry Smith 5069bc08b0f1SBarry Smith /*@ 50702920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 50718a9c020eSBarry Smith 50728a9c020eSBarry Smith Not Collective 50738a9c020eSBarry Smith 50742fe279fdSBarry Smith Input Parameter: 507520f4b53cSBarry Smith . A - the matrix 50768a9c020eSBarry Smith 50778a9c020eSBarry Smith Output Parameter: 50788a9c020eSBarry Smith . A_loc - the local sequential matrix generated 50798a9c020eSBarry Smith 50808a9c020eSBarry Smith Level: developer 50818a9c020eSBarry Smith 50828a9c020eSBarry Smith Notes: 50832920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 50842920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 50852920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 50862920cce0SJacob Faibussowitsch 508711a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 50888a9c020eSBarry Smith 50892920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 50902920cce0SJacob Faibussowitsch 509111a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 50928a9c020eSBarry Smith 50931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 50948a9c020eSBarry Smith @*/ 5095d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5096d71ae5a4SJacob Faibussowitsch { 50978a9c020eSBarry Smith PetscBool mpi; 50988a9c020eSBarry Smith 50998a9c020eSBarry Smith PetscFunctionBegin; 51008a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51018a9c020eSBarry Smith if (mpi) { 51028a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51038a9c020eSBarry Smith } else { 51048a9c020eSBarry Smith *A_loc = A; 51058a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51068a9c020eSBarry Smith } 51073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51088a9c020eSBarry Smith } 51098a9c020eSBarry Smith 51108a9c020eSBarry Smith /*@ 51112920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 511225616d81SHong Zhang 511332fba14fSHong Zhang Not Collective 511425616d81SHong Zhang 511525616d81SHong Zhang Input Parameters: 511625616d81SHong Zhang + A - the matrix 511711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 511825616d81SHong Zhang 511925616d81SHong Zhang Output Parameter: 512025616d81SHong Zhang . A_loc - the local sequential matrix generated 512125616d81SHong Zhang 512225616d81SHong Zhang Level: developer 512325616d81SHong Zhang 512477c65a98SStefano Zampini Notes: 51252920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51262920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51272920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51282920cce0SJacob Faibussowitsch 512911a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51308a9c020eSBarry Smith 51312920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51322920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51332920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51342920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 513577c65a98SStefano Zampini 51361cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 513725616d81SHong Zhang @*/ 5138d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5139d71ae5a4SJacob Faibussowitsch { 514001b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5141b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5142b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5143ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5144ce496241SStefano Zampini PetscScalar *ca, *cam; 514577c65a98SStefano Zampini PetscMPIInt size; 5146d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51475a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 51488661ff28SBarry Smith PetscBool match; 514925616d81SHong Zhang 515025616d81SHong Zhang PetscFunctionBegin; 51519566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 515228b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 51539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 515477c65a98SStefano Zampini if (size == 1) { 515577c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 51569566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 515777c65a98SStefano Zampini *A_loc = mpimat->A; 515877c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 51599566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 516077c65a98SStefano Zampini } 51613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 516277c65a98SStefano Zampini } 516370a9ba44SHong Zhang 51649566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5165f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5166f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 51679371c9d4SSatish Balay ai = a->i; 51689371c9d4SSatish Balay aj = a->j; 51699371c9d4SSatish Balay bi = b->i; 51709371c9d4SSatish Balay bj = b->j; 51719566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 51729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5173ce496241SStefano Zampini aa = aav; 5174ce496241SStefano Zampini ba = bav; 517501b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5177dea91ad1SHong Zhang ci[0] = 0; 5178ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 51799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 51809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5181dea91ad1SHong Zhang k = 0; 518201b7ae99SHong Zhang for (i = 0; i < am; i++) { 51835a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 51845a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 518501b7ae99SHong Zhang /* off-diagonal portion of A */ 51865a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 51875a7d977cSHong Zhang col = cmap[*bj]; 51885a7d977cSHong Zhang if (col >= cstart) break; 51899371c9d4SSatish Balay cj[k] = col; 51909371c9d4SSatish Balay bj++; 51915a7d977cSHong Zhang ca[k++] = *ba++; 51925a7d977cSHong Zhang } 51935a7d977cSHong Zhang /* diagonal portion of A */ 51945a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 51955a7d977cSHong Zhang cj[k] = cstart + *aj++; 51965a7d977cSHong Zhang ca[k++] = *aa++; 51975a7d977cSHong Zhang } 51985a7d977cSHong Zhang /* off-diagonal portion of A */ 51995a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52005a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52015a7d977cSHong Zhang ca[k++] = *ba++; 52025a7d977cSHong Zhang } 520325616d81SHong Zhang } 5204dea91ad1SHong Zhang /* put together the new matrix */ 52059566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5206dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5207dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5208dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5209e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5210e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5211dea91ad1SHong Zhang mat->nonew = 0; 52125a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52135a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5214fff043a9SJunchao Zhang ci = mat->i; 5215fff043a9SJunchao Zhang cj = mat->j; 52169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52175a7d977cSHong Zhang for (i = 0; i < am; i++) { 52185a7d977cSHong Zhang /* off-diagonal portion of A */ 52195a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52205a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52215a7d977cSHong Zhang col = cmap[*bj]; 52225a7d977cSHong Zhang if (col >= cstart) break; 52239371c9d4SSatish Balay *cam++ = *ba++; 52249371c9d4SSatish Balay bj++; 52255a7d977cSHong Zhang } 52265a7d977cSHong Zhang /* diagonal portion of A */ 5227ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5228a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52295a7d977cSHong Zhang /* off-diagonal portion of A */ 5230f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52319371c9d4SSatish Balay *cam++ = *ba++; 52329371c9d4SSatish Balay bj++; 5233f33d1a9aSHong Zhang } 52345a7d977cSHong Zhang } 52359566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 523698921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52379566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52399566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 524125616d81SHong Zhang } 524225616d81SHong Zhang 5243ed502f03SStefano Zampini /*@ 524411a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52454cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5246ed502f03SStefano Zampini 5247ed502f03SStefano Zampini Not Collective 5248ed502f03SStefano Zampini 5249ed502f03SStefano Zampini Input Parameters: 5250ed502f03SStefano Zampini + A - the matrix 525111a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5252ed502f03SStefano Zampini 5253d8d19677SJose E. Roman Output Parameters: 52542ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5255ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5256ed502f03SStefano Zampini 5257ed502f03SStefano Zampini Level: developer 5258ed502f03SStefano Zampini 525911a5261eSBarry Smith Note: 52602ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 52614cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5262ed502f03SStefano Zampini 52631cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5264ed502f03SStefano Zampini @*/ 5265d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5266d71ae5a4SJacob Faibussowitsch { 5267ed502f03SStefano Zampini Mat Ao, Ad; 5268ed502f03SStefano Zampini const PetscInt *cmap; 5269ed502f03SStefano Zampini PetscMPIInt size; 5270ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5271ed502f03SStefano Zampini 5272ed502f03SStefano Zampini PetscFunctionBegin; 52739566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 52749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5275ed502f03SStefano Zampini if (size == 1) { 5276ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52779566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5278ed502f03SStefano Zampini *A_loc = Ad; 5279ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52809566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5281ed502f03SStefano Zampini } 52829566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 52833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5284ed502f03SStefano Zampini } 52859566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 52869566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5287ed502f03SStefano Zampini if (f) { 52889566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5289ed502f03SStefano Zampini } else { 5290ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5291ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5292ed502f03SStefano Zampini Mat_SeqAIJ *c; 5293ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5294ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5295ed502f03SStefano Zampini PetscInt *ci, *cj; 5296ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5297ed502f03SStefano Zampini PetscScalar *ca; 5298ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5299ed502f03SStefano Zampini 53009566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53019566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5304ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5305ed502f03SStefano Zampini PetscInt k; 53069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5309ed502f03SStefano Zampini ci[0] = 0; 5310ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5311ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5312ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5313ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5314ed502f03SStefano Zampini /* diagonal portion of A */ 5315ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5316ed502f03SStefano Zampini cj[k] = *aj++; 5317ed502f03SStefano Zampini ca[k] = *aa++; 5318ed502f03SStefano Zampini } 5319ed502f03SStefano Zampini /* off-diagonal portion of A */ 5320ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5321ed502f03SStefano Zampini cj[k] = dn + *bj++; 5322ed502f03SStefano Zampini ca[k] = *ba++; 5323ed502f03SStefano Zampini } 5324ed502f03SStefano Zampini } 5325ed502f03SStefano Zampini /* put together the new matrix */ 53269566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5327ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5328ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5329ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5330ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5331ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5332ed502f03SStefano Zampini c->nonew = 0; 53339566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5334ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53359566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5336ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5337ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5338ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5339ed502f03SStefano Zampini /* diagonal portion of A */ 5340ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5341ed502f03SStefano Zampini /* off-diagonal portion of A */ 5342ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5343ed502f03SStefano Zampini } 53449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 534598921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5348ed502f03SStefano Zampini if (glob) { 5349ed502f03SStefano Zampini PetscInt cst, *gidx; 5350ed502f03SStefano Zampini 53519566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 53529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5353ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5354ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 53559566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5356ed502f03SStefano Zampini } 5357ed502f03SStefano Zampini } 53589566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 53593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5360ed502f03SStefano Zampini } 5361ed502f03SStefano Zampini 536232fba14fSHong Zhang /*@C 536311a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 536432fba14fSHong Zhang 536532fba14fSHong Zhang Not Collective 536632fba14fSHong Zhang 536732fba14fSHong Zhang Input Parameters: 536832fba14fSHong Zhang + A - the matrix 536911a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 537020f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 537120f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 537232fba14fSHong Zhang 537332fba14fSHong Zhang Output Parameter: 537432fba14fSHong Zhang . A_loc - the local sequential matrix generated 537532fba14fSHong Zhang 537632fba14fSHong Zhang Level: developer 537732fba14fSHong Zhang 53781cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 537932fba14fSHong Zhang @*/ 5380d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5381d71ae5a4SJacob Faibussowitsch { 538232fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 538332fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 538432fba14fSHong Zhang IS isrowa, iscola; 538532fba14fSHong Zhang Mat *aloc; 53864a2b5492SBarry Smith PetscBool match; 538732fba14fSHong Zhang 538832fba14fSHong Zhang PetscFunctionBegin; 53899566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 539028b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 53919566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 539232fba14fSHong Zhang if (!row) { 53939371c9d4SSatish Balay start = A->rmap->rstart; 53949371c9d4SSatish Balay end = A->rmap->rend; 53959566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 539632fba14fSHong Zhang } else { 539732fba14fSHong Zhang isrowa = *row; 539832fba14fSHong Zhang } 539932fba14fSHong Zhang if (!col) { 5400d0f46423SBarry Smith start = A->cmap->rstart; 540132fba14fSHong Zhang cmap = a->garray; 5402d0f46423SBarry Smith nzA = a->A->cmap->n; 5403d0f46423SBarry Smith nzB = a->B->cmap->n; 54049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 540532fba14fSHong Zhang ncols = 0; 540632fba14fSHong Zhang for (i = 0; i < nzB; i++) { 540732fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 540832fba14fSHong Zhang else break; 540932fba14fSHong Zhang } 541032fba14fSHong Zhang imark = i; 541132fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 541232fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54139566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 541432fba14fSHong Zhang } else { 541532fba14fSHong Zhang iscola = *col; 541632fba14fSHong Zhang } 541732fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 541932fba14fSHong Zhang aloc[0] = *A_loc; 542032fba14fSHong Zhang } 54219566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5422109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54239566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5424109e0772SStefano Zampini } 542532fba14fSHong Zhang *A_loc = aloc[0]; 54269566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 542748a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 542848a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54299566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 543132fba14fSHong Zhang } 543232fba14fSHong Zhang 54335c65b9ecSFande Kong /* 54345c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54355c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54365c65b9ecSFande Kong * on a global size. 54375c65b9ecSFande Kong * */ 5438ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5439d71ae5a4SJacob Faibussowitsch { 54405c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5441f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5442131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5443131c27b5Sprj- PetscMPIInt owner; 54445c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54455c65b9ecSFande Kong const PetscInt *lrowindices; 54465c65b9ecSFande Kong PetscSF sf, osf; 54475c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 54485c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 54495c65b9ecSFande Kong MPI_Comm comm; 54505c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5451fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 54525c65b9ecSFande Kong 54535c65b9ecSFande Kong PetscFunctionBegin; 54549566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 54555c65b9ecSFande Kong /* plocalsize is the number of roots 54565c65b9ecSFande Kong * nrows is the number of leaves 54575c65b9ecSFande Kong * */ 54589566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 54599566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 54609566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 54619566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 54625c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 54635c65b9ecSFande Kong /* Find a remote index and an owner for a row 54645c65b9ecSFande Kong * The row could be local or remote 54655c65b9ecSFande Kong * */ 546634bcad68SFande Kong owner = 0; 546734bcad68SFande Kong lidx = 0; 54689566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 54695c65b9ecSFande Kong iremote[i].index = lidx; 54705c65b9ecSFande Kong iremote[i].rank = owner; 54715c65b9ecSFande Kong } 54725c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 54739566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5474f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 54755c65b9ecSFande Kong * offsets 54765c65b9ecSFande Kong * */ 54779566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 54789566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 54799566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5480bc8e477aSFande Kong 54819566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 54829566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 54839566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 54845c65b9ecSFande Kong roffsets[0] = 0; 54855c65b9ecSFande Kong roffsets[1] = 0; 54865c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 54874cf0e950SBarry Smith /* diagonal */ 54885c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 54894cf0e950SBarry Smith /* off-diagonal */ 54905c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 54915c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 54925c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 54935c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 54945c65b9ecSFande Kong } 54959566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 54969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 54975c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 54989566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 54999566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55009566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55019566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55029566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55039566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55049566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55055c65b9ecSFande Kong dntotalcols = 0; 55065c65b9ecSFande Kong ontotalcols = 0; 5507bc8e477aSFande Kong ncol = 0; 55085c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55095c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5510bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55114cf0e950SBarry Smith /* diagonal */ 55125c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55134cf0e950SBarry Smith /* off-diagonal */ 55145c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55155c65b9ecSFande Kong } 55165c65b9ecSFande Kong /* We do not need to figure the right number of columns 55175c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55185c65b9ecSFande Kong * */ 55199566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55209566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55219566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55225c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55234cf0e950SBarry Smith /* diagonal */ 55249566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55254cf0e950SBarry Smith /* off-diagonal */ 55269566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55274cf0e950SBarry Smith /* diagonal */ 55289566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55294cf0e950SBarry Smith /* off-diagonal */ 55309566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55315c65b9ecSFande Kong dntotalcols = 0; 55325c65b9ecSFande Kong ontotalcols = 0; 55335c65b9ecSFande Kong ntotalcols = 0; 55345c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 553534bcad68SFande Kong owner = 0; 55369566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55375c65b9ecSFande Kong /* Set iremote for diag matrix */ 55385c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55395c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55405c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55415c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55425c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55435c65b9ecSFande Kong } 55444cf0e950SBarry Smith /* off-diagonal */ 55455c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55465c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55475c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 55485c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 55495c65b9ecSFande Kong } 55505c65b9ecSFande Kong } 55519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 55529566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 55539566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 55549566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 55555c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 55565c65b9ecSFande Kong * Diag matrix 55575c65b9ecSFande Kong * */ 55589566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55599566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55609566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 55615c65b9ecSFande Kong 55629566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 55634cf0e950SBarry Smith /* off-diagonal */ 55649566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 55659566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 55669566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 55679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 55689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 55694cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 55709566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 55719566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 55729566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 55735c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 55745c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 55759566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 55765c65b9ecSFande Kong /* We want P_oth store global indices */ 55779566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 55785c65b9ecSFande Kong /* Use memory scalable approach */ 55799566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 55809566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 55819566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 55829566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 55835c65b9ecSFande Kong /* Convert back to local indices */ 55845c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 55859566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 55865c65b9ecSFande Kong nout = 0; 55879566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 558808401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 55899566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 55905c65b9ecSFande Kong /* Exchange values */ 55919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 55929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 55939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 55949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 55955c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 55965c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 55979566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 55989566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 55995c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56009566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56019566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56029566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56039566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56055c65b9ecSFande Kong } 56065c65b9ecSFande Kong 56075c65b9ecSFande Kong /* 56085c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56095c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56105c65b9ecSFande Kong * */ 5611d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5612d71ae5a4SJacob Faibussowitsch { 56135c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5614bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5615bc8e477aSFande Kong IS rows, map; 5616bc8e477aSFande Kong PetscHMapI hamp; 5617bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56185c65b9ecSFande Kong MPI_Comm comm; 56195c65b9ecSFande Kong PetscSF sf, osf; 5620bc8e477aSFande Kong PetscBool has; 56215c65b9ecSFande Kong 56225c65b9ecSFande Kong PetscFunctionBegin; 56239566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56249566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56255c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56265c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56275c65b9ecSFande Kong * */ 56285c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56295c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5630eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56319566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5632bc8e477aSFande Kong count = 0; 5633bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5634bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5635bc8e477aSFande Kong key = a->garray[i] / dof; 56369566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5637bc8e477aSFande Kong if (!has) { 5638bc8e477aSFande Kong mapping[i] = count; 56399566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5640bc8e477aSFande Kong } else { 5641bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5642bc8e477aSFande Kong mapping[i] = count - 1; 56435c65b9ecSFande Kong } 5644bc8e477aSFande Kong } 56459566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56469566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5647eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 56489566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 56495c65b9ecSFande Kong off = 0; 56509566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 56519566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 56529566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 56539566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 56545c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 56559566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 56569566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 56579566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 56589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 56599566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 56605c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 56615c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 566235cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5663fff043a9SJunchao Zhang */ 5664fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5665fff043a9SJunchao Zhang 56669566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 56679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 566808401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 56695c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 56705c65b9ecSFande Kong /* Update values in place */ 56719566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56749566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56759566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56769566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56796718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 56809566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56825c65b9ecSFande Kong } 56835c65b9ecSFande Kong 568425616d81SHong Zhang /*@C 568520f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 568625616d81SHong Zhang 5687c3339decSBarry Smith Collective 568825616d81SHong Zhang 568925616d81SHong Zhang Input Parameters: 569011a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 569111a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 569211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 569325616d81SHong Zhang 5694f1a722f8SMatthew G. Knepley Output Parameters: 569527430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 569627430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5697f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 569825616d81SHong Zhang 569925616d81SHong Zhang Level: developer 570025616d81SHong Zhang 570120f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 570225616d81SHong Zhang @*/ 5703d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5704d71ae5a4SJacob Faibussowitsch { 5705899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5706b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 570725616d81SHong Zhang IS isrowb, iscolb; 57080298fd71SBarry Smith Mat *bseq = NULL; 570925616d81SHong Zhang 571025616d81SHong Zhang PetscFunctionBegin; 571120f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 571220f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57139566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 571425616d81SHong Zhang 571525616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5716d0f46423SBarry Smith start = A->cmap->rstart; 571725616d81SHong Zhang cmap = a->garray; 5718d0f46423SBarry Smith nzA = a->A->cmap->n; 5719d0f46423SBarry Smith nzB = a->B->cmap->n; 57209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 572125616d81SHong Zhang ncols = 0; 57220390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 572325616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 572425616d81SHong Zhang else break; 572525616d81SHong Zhang } 572625616d81SHong Zhang imark = i; 57270390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57280390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57299566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57309566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 573125616d81SHong Zhang } else { 573208401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57339371c9d4SSatish Balay isrowb = *rowb; 57349371c9d4SSatish Balay iscolb = *colb; 57359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 573625616d81SHong Zhang bseq[0] = *B_seq; 573725616d81SHong Zhang } 57389566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 573925616d81SHong Zhang *B_seq = bseq[0]; 57409566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 574125616d81SHong Zhang if (!rowb) { 57429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 574325616d81SHong Zhang } else { 574425616d81SHong Zhang *rowb = isrowb; 574525616d81SHong Zhang } 574625616d81SHong Zhang if (!colb) { 57479566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 574825616d81SHong Zhang } else { 574925616d81SHong Zhang *colb = iscolb; 575025616d81SHong Zhang } 57519566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 57523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 575325616d81SHong Zhang } 5754429d309bSHong Zhang 5755f8487c73SHong Zhang /* 575627430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 575701b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5758429d309bSHong Zhang 5759c3339decSBarry Smith Collective 5760429d309bSHong Zhang 5761429d309bSHong Zhang Input Parameters: 576227430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 576327430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5764429d309bSHong Zhang 5765429d309bSHong Zhang Output Parameter: 57660298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 57670298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 57680298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5769598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5770429d309bSHong Zhang 577111a5261eSBarry Smith Developer Note: 577211a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 57736eb45d04SBarry Smith for this matrix. This is not desirable.. 57746eb45d04SBarry Smith 5775429d309bSHong Zhang Level: developer 5776429d309bSHong Zhang 5777f8487c73SHong Zhang */ 57786497c311SBarry Smith 5779d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5780d71ae5a4SJacob Faibussowitsch { 5781899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 57824b8d542aSHong Zhang VecScatter ctx; 5783ce94432eSBarry Smith MPI_Comm comm; 57843515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 57856497c311SBarry Smith PetscMPIInt nrecvs, nsends; 57863515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5787277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 57886497c311SBarry Smith PetscInt i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len; 5789277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5790ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5791ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5792429d309bSHong Zhang 5793429d309bSHong Zhang PetscFunctionBegin; 57949566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 57959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5796a7c7454dSHong Zhang 579720f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 579820f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5801a6b2eed2SHong Zhang 5802ec07b8f8SHong Zhang if (size == 1) { 5803ec07b8f8SHong Zhang startsj_s = NULL; 5804ec07b8f8SHong Zhang bufa_ptr = NULL; 580552f7967eSHong Zhang *B_oth = NULL; 58063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5807ec07b8f8SHong Zhang } 5808ec07b8f8SHong Zhang 5809fa83eaafSHong Zhang ctx = a->Mvctx; 58104b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58114b8d542aSHong Zhang 58129566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58133515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58149566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58159566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5817ddea5d60SJunchao Zhang rwaits = reqs; 58188e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5819429d309bSHong Zhang 5820b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5821429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5822a6b2eed2SHong Zhang /* i-array */ 5823a6b2eed2SHong Zhang /* post receives */ 58249566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5825a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 582674268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5827e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58286497c311SBarry Smith PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5829429d309bSHong Zhang } 5830a6b2eed2SHong Zhang 5831a6b2eed2SHong Zhang /* pack the outgoing message */ 58329566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58332205254eSKarl Rupp 58342205254eSKarl Rupp sstartsj[0] = 0; 58352205254eSKarl Rupp rstartsj[0] = 0; 5836a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58373515ee7fSJunchao Zhang if (nsends) { 58383515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58403515ee7fSJunchao Zhang } 5841a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58423515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5843e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 584487025532SHong Zhang for (j = 0; j < nrows; j++) { 5845d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5846e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 58479566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 58482205254eSKarl Rupp 5849e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 58502205254eSKarl Rupp 5851e42f35eeSHong Zhang len += ncols; 58529566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5853e42f35eeSHong Zhang } 5854a6b2eed2SHong Zhang k++; 5855429d309bSHong Zhang } 58566497c311SBarry Smith PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 58572205254eSKarl Rupp 5858dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5859429d309bSHong Zhang } 586087025532SHong Zhang /* recvs and sends of i-array are completed */ 58619566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 58629566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5863e42f35eeSHong Zhang 5864a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 58659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 58669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5867a6b2eed2SHong Zhang 586887025532SHong Zhang /* create i-array of B_oth */ 58699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 58702205254eSKarl Rupp 587187025532SHong Zhang b_othi[0] = 0; 5872a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5873a6b2eed2SHong Zhang k = 0; 5874a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 58753515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 58763515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 587787025532SHong Zhang for (j = 0; j < nrows; j++) { 587887025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 58799566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5880f91af8c7SBarry Smith k++; 5881a6b2eed2SHong Zhang } 5882dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5883a6b2eed2SHong Zhang } 58849566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5885a6b2eed2SHong Zhang 58866aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 58879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 58889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5889a6b2eed2SHong Zhang 589087025532SHong Zhang /* j-array */ 5891a6b2eed2SHong Zhang /* post receives of j-array */ 5892a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 589387025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 58946497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5895a6b2eed2SHong Zhang } 5896e42f35eeSHong Zhang 5897e42f35eeSHong Zhang /* pack the outgoing message j-array */ 58983515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5899a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5900e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5901a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 590287025532SHong Zhang for (j = 0; j < nrows; j++) { 5903d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5904e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59059566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5906ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59079566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5908e42f35eeSHong Zhang } 590987025532SHong Zhang } 59106497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 591187025532SHong Zhang } 591287025532SHong Zhang 591387025532SHong Zhang /* recvs and sends of j-array are completed */ 59149566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 591587025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5916b7f45c76SHong Zhang sstartsj = *startsj_s; 59171d79065fSBarry Smith rstartsj = *startsj_r; 591887025532SHong Zhang bufa = *bufa_ptr; 59199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5920ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 592187025532SHong Zhang 592287025532SHong Zhang /* a-array */ 592387025532SHong Zhang /* post receives of a-array */ 592487025532SHong Zhang for (i = 0; i < nrecvs; i++) { 592587025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59266497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 592787025532SHong Zhang } 5928e42f35eeSHong Zhang 5929e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59303515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 593187025532SHong Zhang for (i = 0; i < nsends; i++) { 5932e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 593387025532SHong Zhang bufA = bufa + sstartsj[i]; 593487025532SHong Zhang for (j = 0; j < nrows; j++) { 5935d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5936e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59379566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5938ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59399566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5940e42f35eeSHong Zhang } 5941a6b2eed2SHong Zhang } 59426497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5943a6b2eed2SHong Zhang } 594487025532SHong Zhang /* recvs and sends of a-array are completed */ 59459566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59469566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 5947a6b2eed2SHong Zhang 594887025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5949dd460d27SBarry Smith Mat_SeqAIJ *b_oth; 5950dd460d27SBarry Smith 5951a6b2eed2SHong Zhang /* put together the new matrix */ 59529566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 5953a6b2eed2SHong Zhang 5954a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5955a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 595687025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 5957e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 5958e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 595987025532SHong Zhang b_oth->nonew = 0; 5960a6b2eed2SHong Zhang 59619566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 5962b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 59639566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 59649566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 5965dea91ad1SHong Zhang } else { 5966b7f45c76SHong Zhang *startsj_s = sstartsj; 59671d79065fSBarry Smith *startsj_r = rstartsj; 596887025532SHong Zhang *bufa_ptr = bufa; 596987025532SHong Zhang } 5970fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 59719566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 5972dea91ad1SHong Zhang } 59733515ee7fSJunchao Zhang 59749566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 59759566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 59769566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 59773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5978429d309bSHong Zhang } 5979ccd8e176SBarry Smith 5980cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 5981cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 5982ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 59839779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 5984a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 5985191b95cbSRichard Tran Mills #endif 5986ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 5987cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 59885d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5989cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 59905d7652ecSHong Zhang #endif 5991d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 5992d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 5993d24d4204SJose E. Roman #endif 599463c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 599563c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 599663c07aadSStefano Zampini #endif 59973338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 59983338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 59993338378cSStefano Zampini #endif 6000d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6001d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6002d5e393b6SSuyash Tandon #endif 60033d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60043d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60053d0639e7SStefano Zampini #endif 6006d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60074222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60084222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 600917667f90SBarry Smith 6010fc4dec0aSBarry Smith /* 6011fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6012fc4dec0aSBarry Smith 6013fc4dec0aSBarry Smith n p p 60142da392ccSBarry Smith [ ] [ ] [ ] 60152da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60162da392ccSBarry Smith [ ] [ ] [ ] 6017fc4dec0aSBarry Smith 6018fc4dec0aSBarry Smith */ 6019d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6020d71ae5a4SJacob Faibussowitsch { 6021fc4dec0aSBarry Smith Mat At, Bt, Ct; 6022fc4dec0aSBarry Smith 6023fc4dec0aSBarry Smith PetscFunctionBegin; 60249566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60259566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 6026fb842aefSJose E. Roman PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct)); 60279566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60289566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60297fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60309566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60319566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6033fc4dec0aSBarry Smith } 6034fc4dec0aSBarry Smith 6035d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6036d71ae5a4SJacob Faibussowitsch { 60376718818eSStefano Zampini PetscBool cisdense; 6038fc4dec0aSBarry Smith 6039fc4dec0aSBarry Smith PetscFunctionBegin; 604008401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60429566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6043d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 604448a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60459566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6046f75ecaa4SHong Zhang 60474222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 60483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6049fc4dec0aSBarry Smith } 6050fc4dec0aSBarry Smith 6051d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6052d71ae5a4SJacob Faibussowitsch { 60534222ddf1SHong Zhang Mat_Product *product = C->product; 60544222ddf1SHong Zhang Mat A = product->A, B = product->B; 6055fc4dec0aSBarry Smith 6056fc4dec0aSBarry Smith PetscFunctionBegin; 605720f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 605820f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 60594222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 60604222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 60613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6062fc4dec0aSBarry Smith } 6063fc4dec0aSBarry Smith 6064d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6065d71ae5a4SJacob Faibussowitsch { 60664222ddf1SHong Zhang Mat_Product *product = C->product; 60674222ddf1SHong Zhang 60684222ddf1SHong Zhang PetscFunctionBegin; 606948a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 60703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60714222ddf1SHong Zhang } 6072394ed5ebSJunchao Zhang 607327430b45SBarry Smith /* 607427430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6075394ed5ebSJunchao Zhang 6076394ed5ebSJunchao Zhang Input Parameters: 6077394ed5ebSJunchao Zhang 6078651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6079651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6080394ed5ebSJunchao Zhang 6081158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6082394ed5ebSJunchao Zhang 6083394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6084394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6085394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6086394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6087394ed5ebSJunchao Zhang 6088394ed5ebSJunchao Zhang Similar for Set2. 6089394ed5ebSJunchao Zhang 6090394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6091394ed5ebSJunchao Zhang 6092158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6093394ed5ebSJunchao Zhang 6094394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6095394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6096394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6097394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6098394ed5ebSJunchao Zhang */ 6099d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6100d71ae5a4SJacob Faibussowitsch { 6101394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6102394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6103394ed5ebSJunchao Zhang 6104394ed5ebSJunchao Zhang PetscFunctionBegin; 61059566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6106394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6107394ed5ebSJunchao Zhang i[0] = 0; 6108394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6109394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6110394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6111394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6112394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6113394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6114394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6115394ed5ebSJunchao Zhang j[t] = j1[b1]; 6116394ed5ebSJunchao Zhang imap1[t1] = t; 6117394ed5ebSJunchao Zhang imap2[t2] = t; 6118394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6119394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61209371c9d4SSatish Balay t1++; 61219371c9d4SSatish Balay t2++; 61229371c9d4SSatish Balay t++; 6123394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6124394ed5ebSJunchao Zhang j[t] = j1[b1]; 6125394ed5ebSJunchao Zhang imap1[t1] = t; 6126394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61279371c9d4SSatish Balay t1++; 61289371c9d4SSatish Balay t++; 6129394ed5ebSJunchao Zhang } else { 6130394ed5ebSJunchao Zhang j[t] = j2[b2]; 6131394ed5ebSJunchao Zhang imap2[t2] = t; 6132394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61339371c9d4SSatish Balay t2++; 61349371c9d4SSatish Balay t++; 6135394ed5ebSJunchao Zhang } 6136394ed5ebSJunchao Zhang } 6137394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6138394ed5ebSJunchao Zhang while (b1 < e1) { 6139394ed5ebSJunchao Zhang j[t] = j1[b1]; 6140394ed5ebSJunchao Zhang imap1[t1] = t; 6141394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61429371c9d4SSatish Balay t1++; 61439371c9d4SSatish Balay t++; 6144394ed5ebSJunchao Zhang } 6145394ed5ebSJunchao Zhang while (b2 < e2) { 6146394ed5ebSJunchao Zhang j[t] = j2[b2]; 6147394ed5ebSJunchao Zhang imap2[t2] = t; 6148394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61499371c9d4SSatish Balay t2++; 61509371c9d4SSatish Balay t++; 6151394ed5ebSJunchao Zhang } 61526497c311SBarry Smith PetscCall(PetscIntCast(t, i + r + 1)); 6153394ed5ebSJunchao Zhang } 61543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6155394ed5ebSJunchao Zhang } 6156394ed5ebSJunchao Zhang 615727430b45SBarry Smith /* 615827430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6159394ed5ebSJunchao Zhang 6160394ed5ebSJunchao Zhang Input Parameters: 6161394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6162394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6163394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6164394ed5ebSJunchao Zhang 6165394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6166394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6167394ed5ebSJunchao Zhang 6168394ed5ebSJunchao Zhang Output Parameters: 6169394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6170394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6171394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6172394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6173394ed5ebSJunchao Zhang 6174394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6175158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6176158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6177394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6178394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6179394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6180394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6181394ed5ebSJunchao Zhang 6182394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6183394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6184394ed5ebSJunchao Zhang 6185394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6186394ed5ebSJunchao Zhang 6187158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6188394ed5ebSJunchao Zhang */ 6189d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6190d71ae5a4SJacob Faibussowitsch { 6191394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6192394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6193394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6194394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6195394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6196394ed5ebSJunchao Zhang 6197394ed5ebSJunchao Zhang PetscFunctionBegin; 61989566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 61999566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6200394ed5ebSJunchao Zhang m = rend - rstart; 6201394ed5ebSJunchao Zhang 6202651b1cf9SStefano Zampini /* Skip negative rows */ 6203651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62049371c9d4SSatish Balay if (i[k] >= 0) break; 6205394ed5ebSJunchao Zhang 6206394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6207394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6208394ed5ebSJunchao Zhang */ 6209394ed5ebSJunchao Zhang while (k < n) { 6210394ed5ebSJunchao Zhang row = i[k]; 6211394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62129371c9d4SSatish Balay for (s = k; s < n; s++) 62139371c9d4SSatish Balay if (i[s] != row) break; 6214651b1cf9SStefano Zampini 62151690c2aeSBarry Smith /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */ 6216394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 62171690c2aeSBarry Smith if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX; 621854c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6219394ed5ebSJunchao Zhang } 62209566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6221158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6222394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6223394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6224394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6225394ed5ebSJunchao Zhang 6226394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6227394ed5ebSJunchao Zhang Atot += mid - k; 6228394ed5ebSJunchao Zhang Btot += s - mid; 6229394ed5ebSJunchao Zhang 6230651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6231394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6232394ed5ebSJunchao Zhang col = j[p]; 62339371c9d4SSatish Balay do { 62341690c2aeSBarry Smith j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */ 62359371c9d4SSatish Balay p++; 6236651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6237394ed5ebSJunchao Zhang Annz++; 6238394ed5ebSJunchao Zhang } 6239394ed5ebSJunchao Zhang 6240651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6241394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6242394ed5ebSJunchao Zhang col = j[p]; 6243d71ae5a4SJacob Faibussowitsch do { 6244d71ae5a4SJacob Faibussowitsch p++; 6245d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6246394ed5ebSJunchao Zhang Bnnz++; 6247394ed5ebSJunchao Zhang } 6248394ed5ebSJunchao Zhang k = s; 6249394ed5ebSJunchao Zhang } 6250394ed5ebSJunchao Zhang 6251394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6252158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6253158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6254158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6255158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6256394ed5ebSJunchao Zhang 62576aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6258394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6259394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6260394ed5ebSJunchao Zhang k = rowBegin[r]; 6261394ed5ebSJunchao Zhang mid = rowMid[r]; 6262394ed5ebSJunchao Zhang s = rowEnd[r]; 62638e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 62648e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6265394ed5ebSJunchao Zhang Atot += mid - k; 6266394ed5ebSJunchao Zhang Btot += s - mid; 6267394ed5ebSJunchao Zhang 6268394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6269394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6270394ed5ebSJunchao Zhang col = j[p]; 6271394ed5ebSJunchao Zhang q = p; 6272d71ae5a4SJacob Faibussowitsch do { 6273d71ae5a4SJacob Faibussowitsch p++; 6274d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6275394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6276394ed5ebSJunchao Zhang Annz++; 6277394ed5ebSJunchao Zhang } 6278394ed5ebSJunchao Zhang 6279394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6280394ed5ebSJunchao Zhang col = j[p]; 6281394ed5ebSJunchao Zhang q = p; 6282d71ae5a4SJacob Faibussowitsch do { 6283d71ae5a4SJacob Faibussowitsch p++; 6284d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6285394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6286394ed5ebSJunchao Zhang Bnnz++; 6287394ed5ebSJunchao Zhang } 6288394ed5ebSJunchao Zhang } 6289394ed5ebSJunchao Zhang /* Output */ 6290394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6291394ed5ebSJunchao Zhang *Annz_ = Annz; 6292394ed5ebSJunchao Zhang *Atot_ = Atot; 6293394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6294394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6295394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6296394ed5ebSJunchao Zhang *Btot_ = Btot; 6297394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 62983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6299394ed5ebSJunchao Zhang } 6300394ed5ebSJunchao Zhang 630127430b45SBarry Smith /* 630227430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6303158ec288SJunchao Zhang 6304158ec288SJunchao Zhang Input Parameters: 6305158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6306158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6307158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6308651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6309158ec288SJunchao Zhang 6310158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6311158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6312158ec288SJunchao Zhang 6313158ec288SJunchao Zhang Example: 6314158ec288SJunchao Zhang nnz1 = 4 6315158ec288SJunchao Zhang nnz = 6 6316158ec288SJunchao Zhang imap = [1,3,4,5] 6317158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6318158ec288SJunchao Zhang then, 6319158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6320158ec288SJunchao Zhang */ 6321d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6322d71ae5a4SJacob Faibussowitsch { 6323158ec288SJunchao Zhang PetscCount k, p; 6324158ec288SJunchao Zhang 6325158ec288SJunchao Zhang PetscFunctionBegin; 6326158ec288SJunchao Zhang jmap_new[0] = 0; 6327158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6328158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6329158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6330158ec288SJunchao Zhang } 6331158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6333158ec288SJunchao Zhang } 6334158ec288SJunchao Zhang 633549abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data) 63362c4ab24aSJunchao Zhang { 633749abdd8aSBarry Smith MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data; 63382c4ab24aSJunchao Zhang 63392c4ab24aSJunchao Zhang PetscFunctionBegin; 63402c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63412c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63422c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63432c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63442c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63452c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63462c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63472c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 63482c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 63492c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 63502c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 63512c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 63522c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 63532c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 63542c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 63552c4ab24aSJunchao Zhang } 63562c4ab24aSJunchao Zhang 6357d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6358d71ae5a4SJacob Faibussowitsch { 6359394ed5ebSJunchao Zhang MPI_Comm comm; 6360394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6361394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6362394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6363394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 63642c4ab24aSJunchao Zhang PetscContainer container; 63652c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6366394ed5ebSJunchao Zhang 6367394ed5ebSJunchao Zhang PetscFunctionBegin; 63689566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 63699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6370cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6371eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6372cbc6b225SStefano Zampini #else 63739566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6374cbc6b225SStefano Zampini #endif 63759566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6376cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6377cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6378cbc6b225SStefano Zampini 63799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 63809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 63819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 63829566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 63839566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 63849566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 63859566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 63869566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 63879566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6388394ed5ebSJunchao Zhang 63896aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6390394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6391394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6392e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6393e8729f6fSJunchao Zhang 6394e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6395394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6396394ed5ebSJunchao Zhang 6397394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6398394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6399394ed5ebSJunchao Zhang will have positive row indices. 6400394ed5ebSJunchao Zhang */ 6401394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 64021690c2aeSBarry Smith if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN; /* e.g., -2^31, minimal to move them ahead */ 64031690c2aeSBarry Smith else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */ 6404f7d195e4SLawrence Mitchell else { 6405f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 64061690c2aeSBarry Smith if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */ 6407f7d195e4SLawrence Mitchell } 6408394ed5ebSJunchao Zhang } 6409394ed5ebSJunchao Zhang 6410da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64119566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6412651b1cf9SStefano Zampini 6413651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6414651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64151690c2aeSBarry Smith if (i1[k] > PETSC_INT_MIN) break; 64166497c311SBarry Smith PetscCount i1start = k; 6417651b1cf9SStefano Zampini 64181690c2aeSBarry Smith PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */ 64191690c2aeSBarry Smith for (; k < rem; k++) i1[k] += PETSC_INT_MAX; /* Revert row indices of local rows*/ 6420394ed5ebSJunchao Zhang 6421394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6422394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6423394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6424394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6425394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6426394ed5ebSJunchao Zhang const PetscInt *ranges; 6427394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6428394ed5ebSJunchao Zhang 64299566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64309566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6431394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6432394ed5ebSJunchao Zhang PetscMPIInt owner; 6433394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6434cbc6b225SStefano Zampini 6435394ed5ebSJunchao Zhang /* Locate a row range */ 6436394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64379566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6438394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6439394ed5ebSJunchao Zhang 6440394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 64419566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6442394ed5ebSJunchao Zhang 6443394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6444394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6445394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6446394ed5ebSJunchao Zhang PetscInt *nentries2; 6447394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6448cbc6b225SStefano Zampini 64499566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 64509566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 64519566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 64529566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6453394ed5ebSJunchao Zhang sendto = sendto2; 6454394ed5ebSJunchao Zhang nentries = nentries2; 6455394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6456394ed5ebSJunchao Zhang } 6457394ed5ebSJunchao Zhang sendto[nsend] = owner; 64586497c311SBarry Smith PetscCall(PetscIntCast(p - k, &nentries[nsend])); 6459394ed5ebSJunchao Zhang nsend++; 6460394ed5ebSJunchao Zhang k = p; 6461394ed5ebSJunchao Zhang } 6462394ed5ebSJunchao Zhang 6463394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6464394ed5ebSJunchao Zhang PetscSF sf1; 6465394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6466394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6467394ed5ebSJunchao Zhang PetscInt *offsets; 6468394ed5ebSJunchao Zhang PetscSFNode *iremote; 6469394ed5ebSJunchao Zhang 64709566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 64719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 64729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6473394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6474394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6475394ed5ebSJunchao Zhang iremote[k].index = 0; 6476394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 647754c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6478394ed5ebSJunchao Zhang } 64799566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 64809566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 64819566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 64829566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6483e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6484394ed5ebSJunchao Zhang 6485394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6486394ed5ebSJunchao Zhang PetscSF sf2; 6487394ed5ebSJunchao Zhang nroots = nroots2; 6488394ed5ebSJunchao Zhang nleaves = nleaves2; 64899566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 64909566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 64919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6492394ed5ebSJunchao Zhang p = 0; 6493394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 649454c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6495394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6496394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 64976497c311SBarry Smith PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index)); 6498394ed5ebSJunchao Zhang } 6499394ed5ebSJunchao Zhang } 65009566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6501394ed5ebSJunchao Zhang 6502394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6503394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6504394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65059566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6506834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6507834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6508de0a9f35SPierre Jolivet PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem); 6509de0a9f35SPierre Jolivet PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem); 6510834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6511834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6512834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6513834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6514394ed5ebSJunchao Zhang 65159566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65169566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6517394ed5ebSJunchao Zhang 6518394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6519394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65209566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6521394ed5ebSJunchao Zhang 6522651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6523651b1cf9SStefano Zampini PetscCount *Cperm1; 6524834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6525de0a9f35SPierre Jolivet PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem); 6526651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6527834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6528651b1cf9SStefano Zampini 6529651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6530651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6531651b1cf9SStefano Zampini PetscBool hypre; 653217b874c6SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre)); 6533651b1cf9SStefano Zampini if (hypre) { 6534651b1cf9SStefano Zampini PetscInt *minj; 6535651b1cf9SStefano Zampini PetscBT hasdiag; 6536651b1cf9SStefano Zampini 6537651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6538651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 65391690c2aeSBarry Smith for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX; 6540651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6541651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6542651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6543651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6544651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6545651b1cf9SStefano Zampini } 6546651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6547651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6548651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6549651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6550651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6551651b1cf9SStefano Zampini } 6552651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6553651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6554651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6555651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6556651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6557651b1cf9SStefano Zampini } 6558651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6559651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6560651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6561651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6562651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6563651b1cf9SStefano Zampini } 6564651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6565651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6566651b1cf9SStefano Zampini } 6567651b1cf9SStefano Zampini 6568651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6569651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6570651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6571651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6572394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6573394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6574394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6575394ed5ebSJunchao Zhang 6576651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 65779566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6578651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 65799566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6580394ed5ebSJunchao Zhang 6581394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6582394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6583394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6584394ed5ebSJunchao Zhang 65859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 65869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 65879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 65889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6589394ed5ebSJunchao Zhang 6590394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6591158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6592158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6593158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6594158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6595394ed5ebSJunchao Zhang 65969566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 65979566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6598158ec288SJunchao Zhang 6599158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6600158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6601158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6602158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6603158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6604158ec288SJunchao Zhang 6605158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6606158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6607158ec288SJunchao Zhang 6608158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6609158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6610158ec288SJunchao Zhang 6611158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6612158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6613158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6614158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66159566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66169566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6617e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66189566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6619394ed5ebSJunchao Zhang 6620158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6621158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6622158ec288SJunchao Zhang 6623394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6624394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6625394ed5ebSJunchao Zhang PetscInt *Aj_new; 66269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66279566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66289566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6629394ed5ebSJunchao Zhang Aj = Aj_new; 6630394ed5ebSJunchao Zhang } 6631394ed5ebSJunchao Zhang 6632394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6633394ed5ebSJunchao Zhang PetscInt *Bj_new; 66349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66359566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66369566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6637394ed5ebSJunchao Zhang Bj = Bj_new; 6638394ed5ebSJunchao Zhang } 6639394ed5ebSJunchao Zhang 6640cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6641394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6642cbc6b225SStefano Zampini MatType rtype; 6643394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6644cf8ba265SJunchao Zhang PetscObjectState state; 66459566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66469566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6647394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 66489371c9d4SSatish Balay if (cstart) { 66499371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 66509371c9d4SSatish Balay } 6651c508b908SBarry Smith 66529566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6653c508b908SBarry Smith 6654c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6655c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 66569566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 66570da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6658c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6659c508b908SBarry Smith 6660c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6661c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 66629566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 66630da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6664c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6665c508b908SBarry Smith 66669566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 66675bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6668cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6669462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6670cbc6b225SStefano Zampini 6671394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6672394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 66739f0612e4SBarry Smith a->free_a = PETSC_TRUE; 66749f0612e4SBarry Smith a->free_ij = PETSC_TRUE; 66759f0612e4SBarry Smith b->free_a = PETSC_TRUE; 66769f0612e4SBarry Smith b->free_ij = PETSC_TRUE; 667717b874c6SStefano Zampini a->maxnz = a->nz; 667817b874c6SStefano Zampini b->maxnz = b->nz; 6679394ed5ebSJunchao Zhang 6680cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 66819566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 66829566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 66839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 66849566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6685cbc6b225SStefano Zampini 66862c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 66872c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 66882c4ab24aSJunchao Zhang coo->n = coo_n; 66892c4ab24aSJunchao Zhang coo->sf = sf2; 66902c4ab24aSJunchao Zhang coo->sendlen = nleaves; 66912c4ab24aSJunchao Zhang coo->recvlen = nroots; 66922c4ab24aSJunchao Zhang coo->Annz = Annz; 66932c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 66942c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 66952c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 66962c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 66972c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 66982c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 66992c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67002c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67012c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67022c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67032c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67042c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67052c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67062c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67072c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67082c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67092c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67102c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67112c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67122c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67132c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67142c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 671549abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67162c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67172c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6719394ed5ebSJunchao Zhang } 6720394ed5ebSJunchao Zhang 6721d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6722d71ae5a4SJacob Faibussowitsch { 6723394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6724394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6725394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67262c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67272c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67282c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67292c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67302c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67312c4ab24aSJunchao Zhang PetscContainer container; 67322c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6733394ed5ebSJunchao Zhang 6734394ed5ebSJunchao Zhang PetscFunctionBegin; 67352c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67362c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67372c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67382c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67392c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67402c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67412c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67422c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67432c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67442c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67452c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67462c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67472c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67482c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67492c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67502c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 67512c4ab24aSJunchao Zhang 67529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 67539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6754394ed5ebSJunchao Zhang 6755394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 67562c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6757394ed5ebSJunchao Zhang 6758394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 67592c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6760394ed5ebSJunchao Zhang /* Add local entries to A and B */ 67612c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6762da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6763158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6764158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6765394ed5ebSJunchao Zhang } 67662c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6767158ec288SJunchao Zhang PetscScalar sum = 0.0; 6768158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6769158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6770394ed5ebSJunchao Zhang } 67712c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6772394ed5ebSJunchao Zhang 6773394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 67742c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6775394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6776394ed5ebSJunchao Zhang } 67772c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6778394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6779394ed5ebSJunchao Zhang } 67809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 67819566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 67823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6783394ed5ebSJunchao Zhang } 6784394ed5ebSJunchao Zhang 6785ccd8e176SBarry Smith /*MC 6786ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6787ccd8e176SBarry Smith 6788ccd8e176SBarry Smith Options Database Keys: 678911a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6790ccd8e176SBarry Smith 6791ccd8e176SBarry Smith Level: beginner 67920cd7f59aSBarry Smith 67930cd7f59aSBarry Smith Notes: 67942ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 67950cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 67960cd7f59aSBarry Smith in the matrix 67970cd7f59aSBarry Smith 679811a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 679911a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6800ccd8e176SBarry Smith 68011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6802ccd8e176SBarry Smith M*/ 6803d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6804d71ae5a4SJacob Faibussowitsch { 6805ccd8e176SBarry Smith Mat_MPIAIJ *b; 6806ccd8e176SBarry Smith PetscMPIInt size; 6807ccd8e176SBarry Smith 6808ccd8e176SBarry Smith PetscFunctionBegin; 68099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68102205254eSKarl Rupp 68114dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6812ccd8e176SBarry Smith B->data = (void *)b; 6813aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6814ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6815ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6816ccd8e176SBarry Smith b->size = size; 68172205254eSKarl Rupp 68189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6819ccd8e176SBarry Smith 6820ccd8e176SBarry Smith /* build cache for off array entries formed */ 68219566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68222205254eSKarl Rupp 6823ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6824f4259b30SLisandro Dalcin b->colmap = NULL; 6825f4259b30SLisandro Dalcin b->garray = NULL; 6826ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6827ccd8e176SBarry Smith 6828ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68290298fd71SBarry Smith b->lvec = NULL; 68300298fd71SBarry Smith b->Mvctx = NULL; 6831ccd8e176SBarry Smith 6832ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6833f4259b30SLisandro Dalcin b->rowindices = NULL; 6834f4259b30SLisandro Dalcin b->rowvalues = NULL; 6835ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6836ccd8e176SBarry Smith 6837f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68380298fd71SBarry Smith b->spptr = NULL; 6839f60c3dc2SHong Zhang 68409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 6846674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ)); 68479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68513d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 68529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 68533d0639e7SStefano Zampini #endif 6854d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6855d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6856d5e393b6SSuyash Tandon #endif 68573d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 68589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 68593d0639e7SStefano Zampini #endif 68609779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 68619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6862191b95cbSRichard Tran Mills #endif 68639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 68649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 68659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 68669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 68675d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 68695d7652ecSHong Zhang #endif 6870d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 68719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6872d24d4204SJose E. Roman #endif 68739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 68749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 68753dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 68769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 68779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 68783dad0653Sstefano_zampini #endif 68799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 68809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 68819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 68829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 68839566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 68843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6885ccd8e176SBarry Smith } 688681824310SBarry Smith 68875d83a8b1SBarry Smith /*@ 688811a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 688903bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 689003bfb495SBarry Smith 6891d083f849SBarry Smith Collective 689203bfb495SBarry Smith 689303bfb495SBarry Smith Input Parameters: 689403bfb495SBarry Smith + comm - MPI communicator 689511a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 689603bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6897d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 68982ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 68992ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69002ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6901483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 690204ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 690303bfb495SBarry Smith . a - matrix values 6904483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69052ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 690603bfb495SBarry Smith - oa - matrix values 690703bfb495SBarry Smith 690803bfb495SBarry Smith Output Parameter: 690903bfb495SBarry Smith . mat - the matrix 691003bfb495SBarry Smith 691103bfb495SBarry Smith Level: advanced 691203bfb495SBarry Smith 691303bfb495SBarry Smith Notes: 6914f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6915292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 691603bfb495SBarry Smith 69172ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 691803bfb495SBarry Smith 69192ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 692003bfb495SBarry Smith 69217b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69227b55108eSBarry Smith 6923dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6924dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6925dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6926dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 692711a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6928dca341c0SJed Brown communication if it is known that only local entries will be set. 692903bfb495SBarry Smith 69301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6931db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69322b26979fSBarry Smith @*/ 6933d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6934d71ae5a4SJacob Faibussowitsch { 693503bfb495SBarry Smith Mat_MPIAIJ *maij; 693603bfb495SBarry Smith 693703bfb495SBarry Smith PetscFunctionBegin; 693808401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6939aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6940aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69419566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69429566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69439566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 694403bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69452205254eSKarl Rupp 69468d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 694703bfb495SBarry Smith 69489566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69499566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 695003bfb495SBarry Smith 69519566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 69529566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 695303bfb495SBarry Smith 69549566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 69559566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 69569566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 69579566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 69589566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 69593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 696003bfb495SBarry Smith } 696103bfb495SBarry Smith 69624e84afc0SStefano Zampini typedef struct { 69634e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 69644e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 69654e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 69664e84afc0SStefano Zampini 69674e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 69684e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 69694e84afc0SStefano Zampini PetscScalar *bufa; 69704e84afc0SStefano Zampini Mat P_oth; 69714e84afc0SStefano Zampini 69724e84afc0SStefano Zampini /* may take advantage of merging product->B */ 6973ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 69744e84afc0SStefano Zampini 6975ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 69764e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 69774e84afc0SStefano Zampini of the temporary storage */ 69784e84afc0SStefano Zampini PetscBool reusesym; 69794e84afc0SStefano Zampini 69804e84afc0SStefano Zampini /* support for COO values insertion */ 6981ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 6982ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 6983ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 6984ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 6985c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 6986c215019aSStefano Zampini PetscMemType mtype; 69874e84afc0SStefano Zampini 69884e84afc0SStefano Zampini /* customization */ 69894e84afc0SStefano Zampini PetscBool abmerge; 6990abb89eb1SStefano Zampini PetscBool P_oth_bind; 69914e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 69924e84afc0SStefano Zampini 6993ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 6994d71ae5a4SJacob Faibussowitsch { 69954e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 69964e84afc0SStefano Zampini PetscInt i; 69974e84afc0SStefano Zampini 69984e84afc0SStefano Zampini PetscFunctionBegin; 69999566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70009566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70019566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70029566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70039566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70049566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70059566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 700648a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70079566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70089566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70099566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70109566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70119566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70129566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70144e84afc0SStefano Zampini } 70154e84afc0SStefano Zampini 7016fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7017fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7018fff043a9SJunchao Zhang */ 7019d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7020d71ae5a4SJacob Faibussowitsch { 7021c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7022c215019aSStefano Zampini 7023c215019aSStefano Zampini PetscFunctionBegin; 70249566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7025c215019aSStefano Zampini if (f) { 70269566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7027c215019aSStefano Zampini } else { 7028c215019aSStefano Zampini const PetscScalar *vv; 7029c215019aSStefano Zampini 70309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7031c215019aSStefano Zampini if (n && idx) { 7032c215019aSStefano Zampini PetscScalar *w = v; 7033c215019aSStefano Zampini const PetscInt *oi = idx; 7034c215019aSStefano Zampini PetscInt j; 7035c215019aSStefano Zampini 7036c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7037c215019aSStefano Zampini } else { 70389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7039c215019aSStefano Zampini } 70409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7041c215019aSStefano Zampini } 70423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7043c215019aSStefano Zampini } 7044c215019aSStefano Zampini 7045d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7046d71ae5a4SJacob Faibussowitsch { 70474e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70484e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70494e84afc0SStefano Zampini 70504e84afc0SStefano Zampini PetscFunctionBegin; 70514e84afc0SStefano Zampini MatCheckProduct(C, 1); 705228b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 70534e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 70544e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 705548a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 705648a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 70574e84afc0SStefano Zampini } 70584e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7059abb89eb1SStefano Zampini 7060abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 706108401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 70629566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7063abb89eb1SStefano Zampini } 70644e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 70656497c311SBarry Smith PetscInt noff; 70664e84afc0SStefano Zampini 70676497c311SBarry Smith PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff)); 70684e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 70694e84afc0SStefano Zampini if (noff) { 70706497c311SBarry Smith PetscInt nown; 7071c215019aSStefano Zampini 70726497c311SBarry Smith PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown)); 70739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 70749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 70754e84afc0SStefano Zampini n_o += noff; 70764e84afc0SStefano Zampini n_d += nown; 70774e84afc0SStefano Zampini } else { 7078c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7079c215019aSStefano Zampini 70809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 70814e84afc0SStefano Zampini n_d += mm->nz; 70824e84afc0SStefano Zampini } 70834e84afc0SStefano Zampini } 7084c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 70859566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 70869566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 70874e84afc0SStefano Zampini } 70889566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 70893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70904e84afc0SStefano Zampini } 70914e84afc0SStefano Zampini 70924e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 70934e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7094d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7095d71ae5a4SJacob Faibussowitsch { 70964e84afc0SStefano Zampini Mat_Product *product = C->product; 7097ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 70984e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 70994e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71004e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71014e84afc0SStefano Zampini IS glob = NULL; 71024e84afc0SStefano Zampini const char *prefix; 71034e84afc0SStefano Zampini char pprefix[256]; 71044e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 710582a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 710682a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7107ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7108ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7109ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7110ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7111ddea5d60SJunchao Zhang 71124e84afc0SStefano Zampini MatProductType ptype; 7113d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71144e84afc0SStefano Zampini PetscMPIInt size; 71154e84afc0SStefano Zampini 71164e84afc0SStefano Zampini PetscFunctionBegin; 71174e84afc0SStefano Zampini MatCheckProduct(C, 1); 711828b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71194e84afc0SStefano Zampini ptype = product->type; 7120b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7121fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7122fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7123fa046f9fSJunchao Zhang } 71244e84afc0SStefano Zampini switch (ptype) { 71254e84afc0SStefano Zampini case MATPRODUCT_AB: 71264e84afc0SStefano Zampini A = product->A; 71274e84afc0SStefano Zampini P = product->B; 71284e84afc0SStefano Zampini m = A->rmap->n; 71294e84afc0SStefano Zampini n = P->cmap->n; 71304e84afc0SStefano Zampini M = A->rmap->N; 71314e84afc0SStefano Zampini N = P->cmap->N; 7132ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71334e84afc0SStefano Zampini break; 71344e84afc0SStefano Zampini case MATPRODUCT_AtB: 71354e84afc0SStefano Zampini P = product->A; 71364e84afc0SStefano Zampini A = product->B; 71374e84afc0SStefano Zampini m = P->cmap->n; 71384e84afc0SStefano Zampini n = A->cmap->n; 71394e84afc0SStefano Zampini M = P->cmap->N; 71404e84afc0SStefano Zampini N = A->cmap->N; 71414e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71424e84afc0SStefano Zampini break; 71434e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71444e84afc0SStefano Zampini A = product->A; 71454e84afc0SStefano Zampini P = product->B; 71464e84afc0SStefano Zampini m = P->cmap->n; 71474e84afc0SStefano Zampini n = P->cmap->n; 71484e84afc0SStefano Zampini M = P->cmap->N; 71494e84afc0SStefano Zampini N = P->cmap->N; 71504e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71514e84afc0SStefano Zampini break; 7152d71ae5a4SJacob Faibussowitsch default: 7153d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 71544e84afc0SStefano Zampini } 71559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 71564e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 71574e84afc0SStefano Zampini 71584e84afc0SStefano Zampini /* defaults */ 71594e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 71604e84afc0SStefano Zampini mp[i] = NULL; 71614e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 71624e84afc0SStefano Zampini rmapt[i] = -1; 71634e84afc0SStefano Zampini cmapt[i] = -1; 71644e84afc0SStefano Zampini rmapa[i] = NULL; 71654e84afc0SStefano Zampini cmapa[i] = NULL; 71664e84afc0SStefano Zampini } 71674e84afc0SStefano Zampini 71684e84afc0SStefano Zampini /* customization */ 71699566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 71704e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 71714e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 71724e84afc0SStefano Zampini if (product->api_user) { 7173d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 71749566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 71759566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7176d0609cedSBarry Smith PetscOptionsEnd(); 71774e84afc0SStefano Zampini } else { 7178d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 71799566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 71809566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7181d0609cedSBarry Smith PetscOptionsEnd(); 7182abb89eb1SStefano Zampini } 7183abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7184abb89eb1SStefano Zampini if (product->api_user) { 7185d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 71869566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7187d0609cedSBarry Smith PetscOptionsEnd(); 7188abb89eb1SStefano Zampini } else { 7189d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 71909566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7191d0609cedSBarry Smith PetscOptionsEnd(); 71924e84afc0SStefano Zampini } 71934e84afc0SStefano Zampini } 71944e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 71954e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 71969566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 71979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 71989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 71999566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72009566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7201ddea5d60SJunchao Zhang 7202ddea5d60SJunchao Zhang cp = 0; 72034e84afc0SStefano Zampini switch (ptype) { 72044e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72059566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72064e84afc0SStefano Zampini 7207ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7208ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72094e84afc0SStefano Zampini /* P is product->B */ 72109566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72119566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72129566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72139566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72149566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72159566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72169566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72174e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72189566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72199566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72209566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72214e84afc0SStefano Zampini rmapt[cp] = 1; 72224e84afc0SStefano Zampini cmapt[cp] = 2; 72234e84afc0SStefano Zampini cmapa[cp] = globidx; 72244e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72254e84afc0SStefano Zampini cp++; 7226ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72279566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72289566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72299566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72309566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72319566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72329566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72334e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72349566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72359566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72364e84afc0SStefano Zampini rmapt[cp] = 1; 72374e84afc0SStefano Zampini cmapt[cp] = 1; 72384e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72394e84afc0SStefano Zampini cp++; 72409566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72419566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72429566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72439566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72449566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72459566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72464e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72479566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72489566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72494e84afc0SStefano Zampini rmapt[cp] = 1; 72504e84afc0SStefano Zampini cmapt[cp] = 2; 72514e84afc0SStefano Zampini cmapa[cp] = p->garray; 72524e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72534e84afc0SStefano Zampini cp++; 72544e84afc0SStefano Zampini } 7255ddea5d60SJunchao Zhang 7256ddea5d60SJunchao Zhang /* A_off * P_other */ 72574e84afc0SStefano Zampini if (mmdata->P_oth) { 72589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 72599566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7260f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 72619566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 72629566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 72639566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72649566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72659566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72669566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72679566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72684e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72699566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72709566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72714e84afc0SStefano Zampini rmapt[cp] = 1; 72724e84afc0SStefano Zampini cmapt[cp] = 2; 72734e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 72744e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72754e84afc0SStefano Zampini cp++; 72764e84afc0SStefano Zampini } 72774e84afc0SStefano Zampini break; 7278ddea5d60SJunchao Zhang 72794e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 72804e84afc0SStefano Zampini /* A is product->B */ 72819566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7282ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 72839566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 72849566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 72859566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72869566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72879566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72889566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72894e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72909566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72919566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72929566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72934e84afc0SStefano Zampini rmapt[cp] = 2; 72944e84afc0SStefano Zampini rmapa[cp] = globidx; 72954e84afc0SStefano Zampini cmapt[cp] = 2; 72964e84afc0SStefano Zampini cmapa[cp] = globidx; 72974e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72984e84afc0SStefano Zampini cp++; 72994e84afc0SStefano Zampini } else { 73009566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73019566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73029566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73039566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73049566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73059566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73064e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73079566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73089566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73104e84afc0SStefano Zampini rmapt[cp] = 1; 73114e84afc0SStefano Zampini cmapt[cp] = 2; 73124e84afc0SStefano Zampini cmapa[cp] = globidx; 73134e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73144e84afc0SStefano Zampini cp++; 73159566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73169566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73179566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73189566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73199566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73209566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73214e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73229566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73239566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73244e84afc0SStefano Zampini rmapt[cp] = 2; 73254e84afc0SStefano Zampini rmapa[cp] = p->garray; 73264e84afc0SStefano Zampini cmapt[cp] = 2; 73274e84afc0SStefano Zampini cmapa[cp] = globidx; 73284e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73294e84afc0SStefano Zampini cp++; 73304e84afc0SStefano Zampini } 73314e84afc0SStefano Zampini break; 73324e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73339566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73344e84afc0SStefano Zampini /* P is product->B */ 73359566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73369566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73379566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73389566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73399566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73409566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73419566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73424e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73439566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73449566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73459566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73464e84afc0SStefano Zampini rmapt[cp] = 2; 73474e84afc0SStefano Zampini rmapa[cp] = globidx; 73484e84afc0SStefano Zampini cmapt[cp] = 2; 73494e84afc0SStefano Zampini cmapa[cp] = globidx; 73504e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73514e84afc0SStefano Zampini cp++; 73524e84afc0SStefano Zampini if (mmdata->P_oth) { 73539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 73549566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7355f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73569566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73579566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73589566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73599566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73609566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73619566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73629566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73634e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73649566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73659566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73664e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 73674e84afc0SStefano Zampini cp++; 73689566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 73699566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73709566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73719566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73729566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73739566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73744e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73759566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73769566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73774e84afc0SStefano Zampini rmapt[cp] = 2; 73784e84afc0SStefano Zampini rmapa[cp] = globidx; 73794e84afc0SStefano Zampini cmapt[cp] = 2; 73804e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73814e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73824e84afc0SStefano Zampini cp++; 73834e84afc0SStefano Zampini } 73844e84afc0SStefano Zampini break; 7385d71ae5a4SJacob Faibussowitsch default: 7386d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 73874e84afc0SStefano Zampini } 73884e84afc0SStefano Zampini /* sanity check */ 73899371c9d4SSatish Balay if (size > 1) 73909371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 73914e84afc0SStefano Zampini 73929566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7393ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7394ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7395ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7396ddea5d60SJunchao Zhang } 73974e84afc0SStefano Zampini mmdata->cp = cp; 73984e84afc0SStefano Zampini C->product->data = mmdata; 73994e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74004e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74014e84afc0SStefano Zampini 7402c215019aSStefano Zampini /* memory type */ 7403c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74049566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7405d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74069566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7407c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7408d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74093214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7410c215019aSStefano Zampini 74114e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7412ddea5d60SJunchao Zhang 7413ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7414ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7415ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7416ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7417ddea5d60SJunchao Zhang */ 74184e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74194e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74204e84afc0SStefano Zampini if (mptmp[cp]) continue; 7421ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74224e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74234e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74244e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74254e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74264e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74274e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74284e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74294e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7430ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7431ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74324e84afc0SStefano Zampini } 74334e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74344e84afc0SStefano Zampini } 7435ddea5d60SJunchao Zhang 7436ddea5d60SJunchao Zhang /* 7437ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7438ddea5d60SJunchao Zhang 7439ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7440ddea5d60SJunchao Zhang 7441d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7442ddea5d60SJunchao Zhang 7443ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7444ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7445ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7446ddea5d60SJunchao Zhang 7447ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7448da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7449ddea5d60SJunchao Zhang */ 74509566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74519566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7452ddea5d60SJunchao Zhang 7453ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7454ddea5d60SJunchao Zhang if (hasoffproc) { 74554e84afc0SStefano Zampini PetscSF msf; 74564e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 74574e84afc0SStefano Zampini 74589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 74599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 74609566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7461ddea5d60SJunchao Zhang 74624e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 74634e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74644e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 74654e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7466ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 74674e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74684e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 74694e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74704e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 74714e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 74724e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74734e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74744e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74754e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 74764e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74774e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 74784e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74794e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7480ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 74814e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 74824e84afc0SStefano Zampini *coi++ = gr; 74834e84afc0SStefano Zampini *idxoff++ = j; 74844e84afc0SStefano Zampini } 74854e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 74864e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 74874e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 74884e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 74894e84afc0SStefano Zampini } else { /* offdiag */ 74904e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 74914e84afc0SStefano Zampini } 74924e84afc0SStefano Zampini ncoo_o += nz; 7493ddea5d60SJunchao Zhang } else { /* this is a local row */ 74944e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 74954e84afc0SStefano Zampini } 74964e84afc0SStefano Zampini } 74974e84afc0SStefano Zampini } 74984e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 74994e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75004e84afc0SStefano Zampini } 75014e84afc0SStefano Zampini 75029566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75036497c311SBarry Smith PetscInt incoo_o; 75046497c311SBarry Smith PetscCall(PetscIntCast(ncoo_o, &incoo_o)); 75056497c311SBarry Smith PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75069566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75079566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75084e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75099566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75109566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75119566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75129566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75139566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75149566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7515ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75169566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75174e84afc0SStefano Zampini coo_i = coo_i2; 75184e84afc0SStefano Zampini coo_j = coo_j2; 75194e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75204e84afc0SStefano Zampini ncoo = ncoo_d; 75219566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7522c215019aSStefano Zampini 75239566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75249566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75259566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75264e84afc0SStefano Zampini } 7527c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75284e84afc0SStefano Zampini 7529ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75304e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75314e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75324e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75334e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75344e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75354e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75364e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75374e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75384e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75394e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75404e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75414e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75424e84afc0SStefano Zampini 75434e84afc0SStefano Zampini if (mptmp[cp]) continue; 7544ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7545ddea5d60SJunchao Zhang /* fill coo_i */ 75464e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75474e84afc0SStefano Zampini const PetscInt gr = i + rs; 75484e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75494e84afc0SStefano Zampini } 7550ddea5d60SJunchao Zhang /* fill coo_j */ 7551ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75529566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7553ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7554ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7555ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75564e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 75574e84afc0SStefano Zampini } 75584e84afc0SStefano Zampini ncoo_d += mm->nz; 7559ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 75604e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75614e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75624e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75634e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7564ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 75654e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7566ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75674e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75684e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75694e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7570ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75714e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75724e84afc0SStefano Zampini } 75734e84afc0SStefano Zampini ncoo_d += nz; 75744e84afc0SStefano Zampini } 75754e84afc0SStefano Zampini } 75764e84afc0SStefano Zampini } 75774e84afc0SStefano Zampini } 757848a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 75799566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 758048a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 75819566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7582ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 75839566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 75844e84afc0SStefano Zampini 758539cfb508SMark Adams /* set block sizes */ 758639cfb508SMark Adams A = product->A; 758739cfb508SMark Adams P = product->B; 758839cfb508SMark Adams switch (ptype) { 758939cfb508SMark Adams case MATPRODUCT_PtAP: 759058b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs)); 759139cfb508SMark Adams break; 759239cfb508SMark Adams case MATPRODUCT_RARt: 759358b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs)); 759439cfb508SMark Adams break; 759539cfb508SMark Adams case MATPRODUCT_ABC: 759639cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, product->C)); 759739cfb508SMark Adams break; 759839cfb508SMark Adams case MATPRODUCT_AB: 759939cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, P)); 760039cfb508SMark Adams break; 760139cfb508SMark Adams case MATPRODUCT_AtB: 760258b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs)); 760339cfb508SMark Adams break; 760439cfb508SMark Adams case MATPRODUCT_ABt: 760558b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs)); 760639cfb508SMark Adams break; 760739cfb508SMark Adams default: 760839cfb508SMark Adams SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]); 760939cfb508SMark Adams } 761039cfb508SMark Adams 76114e84afc0SStefano Zampini /* preallocate with COO data */ 76129566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76139566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76154e84afc0SStefano Zampini } 76164e84afc0SStefano Zampini 7617d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7618d71ae5a4SJacob Faibussowitsch { 76194e84afc0SStefano Zampini Mat_Product *product = mat->product; 76204e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76214e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7622abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76234e84afc0SStefano Zampini #else 76244e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76254e84afc0SStefano Zampini #endif 76264e84afc0SStefano Zampini 76274e84afc0SStefano Zampini PetscFunctionBegin; 76284e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76294e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 763048a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 763165e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7632abb89eb1SStefano Zampini switch (product->type) { 7633abb89eb1SStefano Zampini case MATPRODUCT_AB: 7634abb89eb1SStefano Zampini if (product->api_user) { 7635d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76369566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7637d0609cedSBarry Smith PetscOptionsEnd(); 7638abb89eb1SStefano Zampini } else { 7639d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76409566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7641d0609cedSBarry Smith PetscOptionsEnd(); 7642abb89eb1SStefano Zampini } 7643abb89eb1SStefano Zampini break; 7644abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7645abb89eb1SStefano Zampini if (product->api_user) { 7646d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76479566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7648d0609cedSBarry Smith PetscOptionsEnd(); 7649abb89eb1SStefano Zampini } else { 7650d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76519566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7652d0609cedSBarry Smith PetscOptionsEnd(); 7653abb89eb1SStefano Zampini } 7654abb89eb1SStefano Zampini break; 7655abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7656abb89eb1SStefano Zampini if (product->api_user) { 7657d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76589566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7659d0609cedSBarry Smith PetscOptionsEnd(); 7660abb89eb1SStefano Zampini } else { 7661d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76629566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7663d0609cedSBarry Smith PetscOptionsEnd(); 7664abb89eb1SStefano Zampini } 7665abb89eb1SStefano Zampini break; 7666d71ae5a4SJacob Faibussowitsch default: 7667d71ae5a4SJacob Faibussowitsch break; 7668abb89eb1SStefano Zampini } 7669abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7670abb89eb1SStefano Zampini } 76714e84afc0SStefano Zampini #endif 76724e84afc0SStefano Zampini if (match) { 76734e84afc0SStefano Zampini switch (product->type) { 76744e84afc0SStefano Zampini case MATPRODUCT_AB: 76754e84afc0SStefano Zampini case MATPRODUCT_AtB: 7676d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7677d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7678d71ae5a4SJacob Faibussowitsch break; 7679d71ae5a4SJacob Faibussowitsch default: 7680d71ae5a4SJacob Faibussowitsch break; 76814e84afc0SStefano Zampini } 76824e84afc0SStefano Zampini } 76834e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 76849566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 76853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 768681824310SBarry Smith } 768798921bdaSJacob Faibussowitsch 768898921bdaSJacob Faibussowitsch /* 768972833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 769072833a62Smarkadams4 769172833a62Smarkadams4 n - the number of block indices in cc[] 769272833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 769372833a62Smarkadams4 */ 7694d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7695d71ae5a4SJacob Faibussowitsch { 769672833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 769772833a62Smarkadams4 const PetscInt *idx; 769872833a62Smarkadams4 769972833a62Smarkadams4 PetscFunctionBegin; 770072833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 770172833a62Smarkadams4 if (nidx) { 770272833a62Smarkadams4 cnt = 0; 770372833a62Smarkadams4 cc[cnt] = idx[0] / bs; 770472833a62Smarkadams4 for (j = 1; j < nidx; j++) { 770572833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 770672833a62Smarkadams4 } 770772833a62Smarkadams4 } 770872833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 770972833a62Smarkadams4 *n = cnt + 1; 77103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771172833a62Smarkadams4 } 771272833a62Smarkadams4 771372833a62Smarkadams4 /* 771472833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 771572833a62Smarkadams4 771672833a62Smarkadams4 ncollapsed - the number of block indices 771772833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 771872833a62Smarkadams4 */ 7719d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7720d71ae5a4SJacob Faibussowitsch { 772172833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 772272833a62Smarkadams4 772372833a62Smarkadams4 PetscFunctionBegin; 772472833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 772572833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 772672833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 772772833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77289371c9d4SSatish Balay cprevtmp = cprev; 77299371c9d4SSatish Balay cprev = merged; 77309371c9d4SSatish Balay merged = cprevtmp; 773172833a62Smarkadams4 } 773272833a62Smarkadams4 *ncollapsed = nprev; 773372833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 773572833a62Smarkadams4 } 773672833a62Smarkadams4 77372d776b49SBarry Smith /* 773872833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 773972833a62Smarkadams4 774072833a62Smarkadams4 Input Parameter: 774172833a62Smarkadams4 . Amat - matrix 774272833a62Smarkadams4 - symmetrize - make the result symmetric 774372833a62Smarkadams4 + scale - scale with diagonal 774472833a62Smarkadams4 774572833a62Smarkadams4 Output Parameter: 774672833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 774772833a62Smarkadams4 774872833a62Smarkadams4 */ 7749e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7750d71ae5a4SJacob Faibussowitsch { 775172833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 775272833a62Smarkadams4 MPI_Comm comm; 775372833a62Smarkadams4 Mat Gmat; 775472833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 775572833a62Smarkadams4 Mat a, b, c; 775672833a62Smarkadams4 MatType jtype; 775772833a62Smarkadams4 775872833a62Smarkadams4 PetscFunctionBegin; 775972833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 776072833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 776172833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 776272833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 776372833a62Smarkadams4 nloc = (Iend - Istart) / bs; 776472833a62Smarkadams4 776572833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 776672833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 776772833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 776872833a62Smarkadams4 776972833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 777072833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 777172833a62Smarkadams4 implementation */ 777272833a62Smarkadams4 if (bs > 1) { 777372833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 777472833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 777572833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 777672833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 777772833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 777872833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 777972833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 77802cf69117Smarkadams4 MatScalar *aa, val, *AA; 77812cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 77826497c311SBarry Smith 77839371c9d4SSatish Balay if (isseqaij) { 77849371c9d4SSatish Balay a = Amat; 77859371c9d4SSatish Balay b = NULL; 77869371c9d4SSatish Balay } else { 778772833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 77889371c9d4SSatish Balay a = d->A; 77899371c9d4SSatish Balay b = d->B; 779072833a62Smarkadams4 } 779172833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 779232603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 779372833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 77942cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 779559ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 77966497c311SBarry Smith 779759ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 779859ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 779959ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 780059ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 780172833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 780259ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 780359ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 780459ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 780559ee9f9fSPierre Jolivet else { 780659ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 780759ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 780859ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 780972833a62Smarkadams4 } 781059ee9f9fSPierre Jolivet } 781159ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 781259ee9f9fSPierre Jolivet } 781359ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 781472833a62Smarkadams4 if (!ok) { 781572833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 781659ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 781772833a62Smarkadams4 goto old_bs; 781872833a62Smarkadams4 } 781972833a62Smarkadams4 } 782072833a62Smarkadams4 } 782172833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 782272833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 782372833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78242cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 782572833a62Smarkadams4 // diag 782672833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 782772833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 78286497c311SBarry Smith 782972833a62Smarkadams4 ai = aseq->i; 783072833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 783172833a62Smarkadams4 aj = aseq->j + ai[brow]; 78326497c311SBarry Smith for (PetscInt k = 0; k < n; k += bs) { // block columns 783372833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 783472833a62Smarkadams4 val = 0; 7835e02fb3cdSMark Adams if (index_size == 0) { 78366497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 783772833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 78386497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // columns in block 783972833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 784072833a62Smarkadams4 } 784172833a62Smarkadams4 } 7842e02fb3cdSMark Adams } else { // use (index,index) value if provided 78436497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78446497c311SBarry Smith PetscInt ii = index[iii]; 7845e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 78466497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block 78476497c311SBarry Smith PetscInt jj = index[jjj]; 7848cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7849e02fb3cdSMark Adams } 7850e02fb3cdSMark Adams } 7851e02fb3cdSMark Adams } 7852835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 785372833a62Smarkadams4 AA[k / bs] = val; 785472833a62Smarkadams4 } 785572833a62Smarkadams4 grow = Istart / bs + brow / bs; 785666521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 785772833a62Smarkadams4 } 785872833a62Smarkadams4 // off-diag 785972833a62Smarkadams4 if (ismpiaij) { 786072833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 786172833a62Smarkadams4 const PetscScalar *vals; 786272833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 78636497c311SBarry Smith 786472833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 786572833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 786672833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 78676497c311SBarry Smith for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 786859ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 786972833a62Smarkadams4 AA[k / bs] = 0; 787072833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 787172833a62Smarkadams4 } 787272833a62Smarkadams4 nc = ncols / bs; 787372833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7874e02fb3cdSMark Adams if (index_size == 0) { 78756497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 787672833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 78776497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 78786497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // cols in block 7879835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 788072833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 788172833a62Smarkadams4 } 788272833a62Smarkadams4 } 788372833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 788472833a62Smarkadams4 } 7885e02fb3cdSMark Adams } else { // use (index,index) value if provided 78866497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78876497c311SBarry Smith PetscInt ii = index[iii]; 7888e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 78896497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 78906497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block 78916497c311SBarry Smith PetscInt jj = index[jjj]; 7892e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7893e02fb3cdSMark Adams } 7894e02fb3cdSMark Adams } 7895e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7896e02fb3cdSMark Adams } 7897e02fb3cdSMark Adams } 789872833a62Smarkadams4 grow = Istart / bs + brow / bs; 789966521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 790072833a62Smarkadams4 } 790172833a62Smarkadams4 } 790272833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 790372833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79042cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 790572833a62Smarkadams4 } else { 790672833a62Smarkadams4 const PetscScalar *vals; 790772833a62Smarkadams4 const PetscInt *idx; 790872833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 790972833a62Smarkadams4 old_bs: 791072833a62Smarkadams4 /* 791172833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 791272833a62Smarkadams4 */ 791372833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 791432603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 791572833a62Smarkadams4 if (isseqaij) { 791672833a62Smarkadams4 PetscInt max_d_nnz; 79176497c311SBarry Smith 791872833a62Smarkadams4 /* 791972833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 792072833a62Smarkadams4 */ 792172833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 792272833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 792372833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 792448a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 792572833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 792672833a62Smarkadams4 } else if (ismpiaij) { 792772833a62Smarkadams4 Mat Daij, Oaij; 792872833a62Smarkadams4 const PetscInt *garray; 792972833a62Smarkadams4 PetscInt max_d_nnz; 79306497c311SBarry Smith 793172833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 793272833a62Smarkadams4 /* 793372833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 793472833a62Smarkadams4 */ 793572833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 793672833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 793772833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 793848a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 793972833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 794072833a62Smarkadams4 /* 794172833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 794272833a62Smarkadams4 */ 794372833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 794472833a62Smarkadams4 o_nnz[jj] = 0; 794572833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 794672833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 794772833a62Smarkadams4 o_nnz[jj] += ncols; 794872833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 794972833a62Smarkadams4 } 795072833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 795172833a62Smarkadams4 } 795272833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 795372833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 795472833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 795572833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 795672833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 795772833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 795872833a62Smarkadams4 PetscInt dest_row = Ii / bs; 79596497c311SBarry Smith 796072833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 796172833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 796272833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 796372833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 79646497c311SBarry Smith 796572833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 796672833a62Smarkadams4 } 796772833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 796872833a62Smarkadams4 } 796972833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 797072833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 797172833a62Smarkadams4 } 797272833a62Smarkadams4 } else { 79732d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79742d776b49SBarry Smith else { 79752d776b49SBarry Smith Gmat = Amat; 79762d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 79772d776b49SBarry Smith } 79789371c9d4SSatish Balay if (isseqaij) { 79799371c9d4SSatish Balay a = Gmat; 79809371c9d4SSatish Balay b = NULL; 79819371c9d4SSatish Balay } else { 798272833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 79839371c9d4SSatish Balay a = d->A; 79849371c9d4SSatish Balay b = d->B; 798572833a62Smarkadams4 } 79862d776b49SBarry Smith if (filter >= 0 || scale) { 79872d776b49SBarry Smith /* take absolute value of each entry */ 798872833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 798972833a62Smarkadams4 MatInfo info; 799072833a62Smarkadams4 PetscScalar *avals; 79916497c311SBarry Smith 799272833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 799372833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 799472833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 799572833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 799672833a62Smarkadams4 } 799772833a62Smarkadams4 } 79982d776b49SBarry Smith } 799972833a62Smarkadams4 if (symmetrize) { 8000b94d7dedSBarry Smith PetscBool isset, issym; 80016497c311SBarry Smith 8002b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8003b94d7dedSBarry Smith if (!isset || !issym) { 800472833a62Smarkadams4 Mat matTrans; 80056497c311SBarry Smith 800672833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80071fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 800872833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 800972833a62Smarkadams4 } 801072833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80112d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 801272833a62Smarkadams4 if (scale) { 801372833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 801472833a62Smarkadams4 Vec diag; 80156497c311SBarry Smith 801672833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 801772833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 801872833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 801972833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 802072833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 802172833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 802272833a62Smarkadams4 } 802372833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80242d776b49SBarry Smith if (filter >= 0) { 80252ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80262ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80272d776b49SBarry Smith } 802872833a62Smarkadams4 *a_Gmat = Gmat; 80293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 803072833a62Smarkadams4 } 803172833a62Smarkadams4 803272833a62Smarkadams4 /* 803398921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 803498921bdaSJacob Faibussowitsch */ 803598921bdaSJacob Faibussowitsch 803698921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80379566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80389566063dSJacob Faibussowitsch #undef PetscCall 80399371c9d4SSatish Balay #define PetscCall(...) \ 80409371c9d4SSatish Balay do { \ 80415f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 804298921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 804398921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 804498921bdaSJacob Faibussowitsch return; \ 804598921bdaSJacob Faibussowitsch } \ 804698921bdaSJacob Faibussowitsch } while (0) 804798921bdaSJacob Faibussowitsch 804898921bdaSJacob Faibussowitsch #undef SETERRQ 80499371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80509371c9d4SSatish Balay do { \ 805198921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 805298921bdaSJacob Faibussowitsch return; \ 805398921bdaSJacob Faibussowitsch } while (0) 805498921bdaSJacob Faibussowitsch 805598921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 805698921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 805798921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 805898921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 805998921bdaSJacob Faibussowitsch #else 806098921bdaSJacob Faibussowitsch #endif 8061d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8062d71ae5a4SJacob Faibussowitsch { 806398921bdaSJacob Faibussowitsch Mat mat = *mmat; 806498921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 806598921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 806698921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 806798921bdaSJacob Faibussowitsch PetscScalar value; 806898921bdaSJacob Faibussowitsch 806998921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 807098921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80715f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 807298921bdaSJacob Faibussowitsch { 807398921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 807498921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 807598921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 807698921bdaSJacob Faibussowitsch 807798921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 807898921bdaSJacob Faibussowitsch Mat A = aij->A; 807998921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 808098921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 808198921bdaSJacob Faibussowitsch MatScalar *aa; 8082f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 808398921bdaSJacob Faibussowitsch Mat B = aij->B; 808498921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 808598921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 808698921bdaSJacob Faibussowitsch MatScalar *ba; 808798921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 808898921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 808998921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 809098921bdaSJacob Faibussowitsch 809198921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 809298921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 809398921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 809498921bdaSJacob Faibussowitsch 809598921bdaSJacob Faibussowitsch PetscFunctionBegin; 80969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 80979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 809898921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 809998921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81006bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 810198921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 810298921bdaSJacob Faibussowitsch row = im[i] - rstart; 810398921bdaSJacob Faibussowitsch lastcol1 = -1; 810498921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 810598921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 810698921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 810798921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 810898921bdaSJacob Faibussowitsch low1 = 0; 810998921bdaSJacob Faibussowitsch high1 = nrow1; 811098921bdaSJacob Faibussowitsch lastcol2 = -1; 811198921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 811298921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 811398921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 811498921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 811598921bdaSJacob Faibussowitsch low2 = 0; 811698921bdaSJacob Faibussowitsch high2 = nrow2; 811798921bdaSJacob Faibussowitsch 811898921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 811998921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 812098921bdaSJacob Faibussowitsch else value = v[i + j * m]; 812198921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 812298921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 812398921bdaSJacob Faibussowitsch col = in[j] - cstart; 812498921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 812598921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 812698921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 812763a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 812898921bdaSJacob Faibussowitsch } else { 812998921bdaSJacob Faibussowitsch if (mat->was_assembled) { 813048a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 813198921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8132eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 813398921bdaSJacob Faibussowitsch col--; 813498921bdaSJacob Faibussowitsch #else 813598921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 813698921bdaSJacob Faibussowitsch #endif 8137f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 8138eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 813998921bdaSJacob Faibussowitsch col = in[j]; 814098921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 814198921bdaSJacob Faibussowitsch B = aij->B; 814298921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81439371c9d4SSatish Balay bimax = b->imax; 81449371c9d4SSatish Balay bi = b->i; 81459371c9d4SSatish Balay bilen = b->ilen; 81469371c9d4SSatish Balay bj = b->j; 814798921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 814898921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 814998921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 815098921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 815198921bdaSJacob Faibussowitsch low2 = 0; 815298921bdaSJacob Faibussowitsch high2 = nrow2; 815398921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 815498921bdaSJacob Faibussowitsch ba = b->a; 815598921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 815698921bdaSJacob Faibussowitsch } 815798921bdaSJacob Faibussowitsch } else col = in[j]; 815898921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 815998921bdaSJacob Faibussowitsch } 816098921bdaSJacob Faibussowitsch } 816198921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 816298921bdaSJacob Faibussowitsch if (roworiented) { 81639566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 816498921bdaSJacob Faibussowitsch } else { 81659566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 816698921bdaSJacob Faibussowitsch } 816798921bdaSJacob Faibussowitsch } 816898921bdaSJacob Faibussowitsch } 81699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81709566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 817198921bdaSJacob Faibussowitsch } 817298921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 817398921bdaSJacob Faibussowitsch } 817472833a62Smarkadams4 817598921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 817698921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 817798921bdaSJacob Faibussowitsch * original definitions */ 81789566063dSJacob Faibussowitsch #undef PetscCall 817998921bdaSJacob Faibussowitsch #undef SETERRQ 8180