xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision f18d1d100c40f8a75da3bbc4f372c0143dc84211)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */
10674b392bSAlexander #define TYPE AIJ
11674b392bSAlexander #define TYPE_AIJ
12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h"
13674b392bSAlexander #undef TYPE
14674b392bSAlexander #undef TYPE_AIJ
15674b392bSAlexander 
16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat)
1726cec326SBarry Smith {
1826cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1926cec326SBarry Smith 
2026cec326SBarry Smith   PetscFunctionBegin;
2126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
2226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
2326cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
2426cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
2526cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2826cec326SBarry Smith #else
2926cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
3026cec326SBarry Smith #endif
3126cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
3226cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
3326cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
3426cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
3526cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
36674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
37674b392bSAlexander }
38674b392bSAlexander 
39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat)
40674b392bSAlexander {
41674b392bSAlexander   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
42674b392bSAlexander   /* Save the nonzero states of the component matrices because those are what are used to determine
43674b392bSAlexander     the nonzero state of mat */
44674b392bSAlexander   PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate;
45674b392bSAlexander 
46674b392bSAlexander   PetscFunctionBegin;
47674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
48674b392bSAlexander   PetscCall(MatSetUp_MPI_Hash(mat));
49674b392bSAlexander   aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate;
50674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
51674b392bSAlexander }
52674b392bSAlexander 
53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
54674b392bSAlexander {
55674b392bSAlexander   PetscFunctionBegin;
56674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
5726cec326SBarry Smith 
5826cec326SBarry Smith   PetscCall(PetscFree(mat->data));
5926cec326SBarry Smith 
6026cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
6126cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
6226cec326SBarry Smith 
6326cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
6426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
69674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
7126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
7326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
7626cec326SBarry Smith #endif
7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
7926cec326SBarry Smith #endif
8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
8126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
8226cec326SBarry Smith #endif
8326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
8526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
8626cec326SBarry Smith #endif
8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
8826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
8926cec326SBarry Smith #endif
9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
9126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
9226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
9326cec326SBarry Smith #endif
9426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
9526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
9626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
9726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
9826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
9926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
10126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
10226cec326SBarry Smith #endif
10326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
10426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
10526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
10626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
10726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
10826cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
10926cec326SBarry Smith }
11026cec326SBarry Smith 
111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
112d71ae5a4SJacob Faibussowitsch {
1138a9c020eSBarry Smith   Mat B;
1148a9c020eSBarry Smith 
1158a9c020eSBarry Smith   PetscFunctionBegin;
1168a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
1178a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
1188a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
119501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
1203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1218a9c020eSBarry Smith }
1228a9c020eSBarry Smith 
123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
124d71ae5a4SJacob Faibussowitsch {
1258a9c020eSBarry Smith   Mat B;
1268a9c020eSBarry Smith 
1278a9c020eSBarry Smith   PetscFunctionBegin;
1288a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1298a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
130501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1328a9c020eSBarry Smith }
1338a9c020eSBarry Smith 
13401bebe75SBarry Smith /*MC
13501bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
13601bebe75SBarry Smith 
13711a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
13811a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
13911a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
14001bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14101bebe75SBarry Smith   the above preallocation routines for simplicity.
14201bebe75SBarry Smith 
14327430b45SBarry Smith    Options Database Key:
14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
14501bebe75SBarry Smith 
14611a5261eSBarry Smith   Developer Note:
1472ef1f0ffSBarry Smith   Level: beginner
1482ef1f0ffSBarry Smith 
14911a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
15001bebe75SBarry Smith    enough exist.
15101bebe75SBarry Smith 
1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
15301bebe75SBarry Smith M*/
15401bebe75SBarry Smith 
15501bebe75SBarry Smith /*MC
15601bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
15701bebe75SBarry Smith 
15811a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
15911a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
16011a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
16101bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
16201bebe75SBarry Smith   the above preallocation routines for simplicity.
16301bebe75SBarry Smith 
16427430b45SBarry Smith    Options Database Key:
16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
16601bebe75SBarry Smith 
16701bebe75SBarry Smith   Level: beginner
16801bebe75SBarry Smith 
1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
17001bebe75SBarry Smith M*/
17101bebe75SBarry Smith 
172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
173d71ae5a4SJacob Faibussowitsch {
174f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
175f74ef234SStefano Zampini 
176f74ef234SStefano Zampini   PetscFunctionBegin;
177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
178b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
179f74ef234SStefano Zampini #endif
1801baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1811baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1823120d049SRichard Tran Mills 
1833120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1843120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1853120d049SRichard Tran Mills    * to differ from the parent matrix. */
1861baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1871baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189f74ef234SStefano Zampini }
190f74ef234SStefano Zampini 
191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
192d71ae5a4SJacob Faibussowitsch {
19326bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
19426bda2c4Sstefano_zampini 
19526bda2c4Sstefano_zampini   PetscFunctionBegin;
19646533700Sstefano_zampini   if (mat->A) {
1979566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1989566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
19946533700Sstefano_zampini   }
2003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20126bda2c4Sstefano_zampini }
20226bda2c4Sstefano_zampini 
203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
204d71ae5a4SJacob Faibussowitsch {
20527d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
20627d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
20727d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
20827d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
209ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
21027d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
21127d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
21227d4218bSShri Abhyankar 
21327d4218bSShri Abhyankar   PetscFunctionBegin;
214f4259b30SLisandro Dalcin   *keptrows = NULL;
215ce496241SStefano Zampini 
21627d4218bSShri Abhyankar   ia = a->i;
21727d4218bSShri Abhyankar   ib = b->i;
2189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
22027d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22127d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22227d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22327d4218bSShri Abhyankar     if (!na && !nb) {
22427d4218bSShri Abhyankar       cnt++;
22527d4218bSShri Abhyankar       goto ok1;
22627d4218bSShri Abhyankar     }
227ce496241SStefano Zampini     aa = aav + ia[i];
22827d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
22927d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
23027d4218bSShri Abhyankar     }
2318e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23227d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23327d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
23427d4218bSShri Abhyankar     }
23527d4218bSShri Abhyankar     cnt++;
23627d4218bSShri Abhyankar   ok1:;
23727d4218bSShri Abhyankar   }
238462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
239ce496241SStefano Zampini   if (!n0rows) {
2409566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2419566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
243ce496241SStefano Zampini   }
2449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
24527d4218bSShri Abhyankar   cnt = 0;
24627d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
24727d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
24827d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
24927d4218bSShri Abhyankar     if (!na && !nb) continue;
250ce496241SStefano Zampini     aa = aav + ia[i];
25127d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
25227d4218bSShri Abhyankar       if (aa[j] != 0.0) {
25327d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
25427d4218bSShri Abhyankar         goto ok2;
25527d4218bSShri Abhyankar       }
25627d4218bSShri Abhyankar     }
2578e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
25827d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
25927d4218bSShri Abhyankar       if (bb[j] != 0.0) {
26027d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
26127d4218bSShri Abhyankar         goto ok2;
26227d4218bSShri Abhyankar       }
26327d4218bSShri Abhyankar     }
26427d4218bSShri Abhyankar   ok2:;
26527d4218bSShri Abhyankar   }
2669566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27027d4218bSShri Abhyankar }
27127d4218bSShri Abhyankar 
272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
273d71ae5a4SJacob Faibussowitsch {
27499e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
27594342113SStefano Zampini   PetscBool   cong;
27699e65526SBarry Smith 
27799e65526SBarry Smith   PetscFunctionBegin;
2789566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
27994342113SStefano Zampini   if (Y->assembled && cong) {
2809566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
28199e65526SBarry Smith   } else {
2829566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
28399e65526SBarry Smith   }
2843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28599e65526SBarry Smith }
28699e65526SBarry Smith 
287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
288d71ae5a4SJacob Faibussowitsch {
289f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
290f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
291f1f41ecbSJed Brown 
292f1f41ecbSJed Brown   PetscFunctionBegin;
2930298fd71SBarry Smith   *zrows = NULL;
2949566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2959566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
296f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2979566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
299f1f41ecbSJed Brown }
300f1f41ecbSJed Brown 
301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
302d71ae5a4SJacob Faibussowitsch {
3030716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
304a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
3050716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
3060716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
3070716a85fSBarry Smith   PetscReal         *work;
308ce496241SStefano Zampini   const PetscScalar *dummy;
3090716a85fSBarry Smith 
3100716a85fSBarry Smith   PetscFunctionBegin;
3119566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
3129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
3139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
3149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
3159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
3169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
317857cbf51SRichard Tran Mills   if (type == NORM_2) {
318ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
319ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
320857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
321ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
322ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
323857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
324ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
325ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
326857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
327ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
328ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
329857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
330ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
331ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
332857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
333857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
334e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3350716a85fSBarry Smith   } else {
336e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3370716a85fSBarry Smith   }
3389566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
339857cbf51SRichard Tran Mills   if (type == NORM_2) {
340a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
341857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
342a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3430716a85fSBarry Smith   }
3443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3450716a85fSBarry Smith }
3460716a85fSBarry Smith 
347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
348d71ae5a4SJacob Faibussowitsch {
349e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
350e52d2c62SBarry Smith   IS              sis, gis;
351e52d2c62SBarry Smith   const PetscInt *isis, *igis;
352e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
353e52d2c62SBarry Smith 
354e52d2c62SBarry Smith   PetscFunctionBegin;
3559566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3569566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3579566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3589566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3599566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3609566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
361e52d2c62SBarry Smith 
3629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3639566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3649566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
365e52d2c62SBarry Smith   n = ngis + nsis;
3669566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3679566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
368e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3699566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
370e52d2c62SBarry Smith 
3719566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3729566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3739566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3749566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
376e52d2c62SBarry Smith }
377e52d2c62SBarry Smith 
378dd6ea824SBarry Smith /*
3790f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3810f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
38372fa4726SStefano Zampini has an order N integer array but is fast to access.
3849e25ed09SBarry Smith */
385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
386d71ae5a4SJacob Faibussowitsch {
38744a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
388d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
389dbb450caSBarry Smith 
3903a40ed3dSBarry Smith   PetscFunctionBegin;
39108401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
393eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
394c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
395b1fc9764SSatish Balay #else
3969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
397905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
398b1fc9764SSatish Balay #endif
3993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4009e25ed09SBarry Smith }
4019e25ed09SBarry Smith 
402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
403a8f51744SPierre Jolivet   do { \
404db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
405db4deed7SKarl Rupp     else high1 = nrow1; \
406fd3458f5SBarry Smith     lastcol1 = col; \
407fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
408fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
409fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
410fd3458f5SBarry Smith       else low1 = t; \
411ba4e3ef2SSatish Balay     } \
412fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
413fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
414fd3458f5SBarry Smith       if (rp1[_i] == col) { \
4150c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4160c0d7e18SFande Kong           ap1[_i] += value; \
4170c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
4180c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4199371c9d4SSatish Balay         } else ap1[_i] = value; \
42030770e4dSSatish Balay         goto a_noinsert; \
4210520107fSSatish Balay       } \
4220520107fSSatish Balay     } \
4239371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4249371c9d4SSatish Balay       low1  = 0; \
4259371c9d4SSatish Balay       high1 = nrow1; \
4269371c9d4SSatish Balay       goto a_noinsert; \
4279371c9d4SSatish Balay     } \
4289371c9d4SSatish Balay     if (nonew == 1) { \
4299371c9d4SSatish Balay       low1  = 0; \
4309371c9d4SSatish Balay       high1 = nrow1; \
4319371c9d4SSatish Balay       goto a_noinsert; \
4329371c9d4SSatish Balay     } \
43308401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
434fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4359371c9d4SSatish Balay     N = nrow1++ - 1; \
4369371c9d4SSatish Balay     a->nz++; \
4379371c9d4SSatish Balay     high1++; \
4380520107fSSatish Balay     /* shift up all the later entries in this row */ \
4399566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4409566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
441fd3458f5SBarry Smith     rp1[_i] = col; \
442fd3458f5SBarry Smith     ap1[_i] = value; \
44330770e4dSSatish Balay   a_noinsert:; \
444fd3458f5SBarry Smith     ailen[row] = nrow1; \
445a8f51744SPierre Jolivet   } while (0)
4460a198c4cSBarry Smith 
447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
448a8f51744SPierre Jolivet   do { \
449db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
450db4deed7SKarl Rupp     else high2 = nrow2; \
451fd3458f5SBarry Smith     lastcol2 = col; \
452fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
453fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
454fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
455fd3458f5SBarry Smith       else low2 = t; \
456ba4e3ef2SSatish Balay     } \
457fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
458fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
459fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4600c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4610c0d7e18SFande Kong           ap2[_i] += value; \
4620c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4639371c9d4SSatish Balay         } else ap2[_i] = value; \
46430770e4dSSatish Balay         goto b_noinsert; \
46530770e4dSSatish Balay       } \
46630770e4dSSatish Balay     } \
4679371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4689371c9d4SSatish Balay       low2  = 0; \
4699371c9d4SSatish Balay       high2 = nrow2; \
4709371c9d4SSatish Balay       goto b_noinsert; \
4719371c9d4SSatish Balay     } \
4729371c9d4SSatish Balay     if (nonew == 1) { \
4739371c9d4SSatish Balay       low2  = 0; \
4749371c9d4SSatish Balay       high2 = nrow2; \
4759371c9d4SSatish Balay       goto b_noinsert; \
4769371c9d4SSatish Balay     } \
47708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
478fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4799371c9d4SSatish Balay     N = nrow2++ - 1; \
4809371c9d4SSatish Balay     b->nz++; \
4819371c9d4SSatish Balay     high2++; \
48230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4839566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4849566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
485fd3458f5SBarry Smith     rp2[_i] = col; \
486fd3458f5SBarry Smith     ap2[_i] = value; \
48730770e4dSSatish Balay   b_noinsert:; \
488fd3458f5SBarry Smith     bilen[row] = nrow2; \
489a8f51744SPierre Jolivet   } while (0)
49030770e4dSSatish Balay 
491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
492d71ae5a4SJacob Faibussowitsch {
4932fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4942fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4952fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
496fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4972fd7e33dSBarry Smith 
4982fd7e33dSBarry Smith   PetscFunctionBegin;
4992fd7e33dSBarry Smith   /* code only works for square matrices A */
5002fd7e33dSBarry Smith 
5012fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
5029566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
5032fd7e33dSBarry Smith   row = row - diag;
5042fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
5052fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
5062fd7e33dSBarry Smith   }
507fff043a9SJunchao Zhang   if (l) {
5089566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5099566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
5109566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
511fff043a9SJunchao Zhang   }
5122fd7e33dSBarry Smith 
5132fd7e33dSBarry Smith   /* diagonal part */
514fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
5159566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
51657508eceSPierre Jolivet     PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row]));
5179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
518fff043a9SJunchao Zhang   }
5192fd7e33dSBarry Smith 
5202fd7e33dSBarry Smith   /* right of diagonal part */
521fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5229566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5239566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
525fff043a9SJunchao Zhang   }
5263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5272fd7e33dSBarry Smith }
5282fd7e33dSBarry Smith 
529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
530d71ae5a4SJacob Faibussowitsch {
53144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
532071fcb05SBarry Smith   PetscScalar value = 0.0;
533d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
534d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
535ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5368a729477SBarry Smith 
5370520107fSSatish Balay   /* Some Variables required in the macro */
5384ee7247eSSatish Balay   Mat         A     = aij->A;
5394ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
54057809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
541ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
54230770e4dSSatish Balay   Mat         B                 = aij->B;
54330770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
544d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
545ce496241SStefano Zampini   MatScalar  *aa, *ba;
546fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5478d76821aSHong Zhang   PetscInt    nonew;
548a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5494ee7247eSSatish Balay 
5503a40ed3dSBarry Smith   PetscFunctionBegin;
5519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5538a729477SBarry Smith   for (i = 0; i < m; i++) {
5545ef9f2a5SBarry Smith     if (im[i] < 0) continue;
55508401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5564b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5574b0e389bSBarry Smith       row      = im[i] - rstart;
558fd3458f5SBarry Smith       lastcol1 = -1;
5598e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5608e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
561fd3458f5SBarry Smith       rmax1    = aimax[row];
562fd3458f5SBarry Smith       nrow1    = ailen[row];
563fd3458f5SBarry Smith       low1     = 0;
564fd3458f5SBarry Smith       high1    = nrow1;
565fd3458f5SBarry Smith       lastcol2 = -1;
5668e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5678e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
568fd3458f5SBarry Smith       rmax2    = bimax[row];
569d498b1e9SBarry Smith       nrow2    = bilen[row];
570fd3458f5SBarry Smith       low2     = 0;
571fd3458f5SBarry Smith       high2    = nrow2;
572fd3458f5SBarry Smith 
5731eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
574071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
575c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
576fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
577fd3458f5SBarry Smith           col   = in[j] - cstart;
5788d76821aSHong Zhang           nonew = a->nonew;
579d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
580f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
581f7d195e4SLawrence Mitchell           continue;
582f7d195e4SLawrence Mitchell         } else {
583f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
584227d817aSBarry Smith           if (mat->was_assembled) {
58548a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
587eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
588fa46199cSSatish Balay             col--;
589b1fc9764SSatish Balay #else
590905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
591b1fc9764SSatish Balay #endif
592f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
593eb14dd14SAlex Lindsay               PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));  /* Change aij->B from reduced/local format to expanded/global format */
5944b0e389bSBarry Smith               col = in[j];
5959bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
596f9508a3cSSatish Balay               B     = aij->B;
597f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5989371c9d4SSatish Balay               bimax = b->imax;
5999371c9d4SSatish Balay               bi    = b->i;
6009371c9d4SSatish Balay               bilen = b->ilen;
6019371c9d4SSatish Balay               bj    = b->j;
6029371c9d4SSatish Balay               ba    = b->a;
603cff58d65SJunchao Zhang               rp2   = PetscSafePointerPlusOffset(bj, bi[row]);
604cff58d65SJunchao Zhang               ap2   = PetscSafePointerPlusOffset(ba, bi[row]);
605d498b1e9SBarry Smith               rmax2 = bimax[row];
606d498b1e9SBarry Smith               nrow2 = bilen[row];
607d498b1e9SBarry Smith               low2  = 0;
608d498b1e9SBarry Smith               high2 = nrow2;
609d0f46423SBarry Smith               bm    = aij->B->rmap->n;
610f9508a3cSSatish Balay               ba    = b->a;
611d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
612f4f49eeaSPierre Jolivet               if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) {
6139566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
61498921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
6150587a0fcSBarry Smith             }
616c48de900SBarry Smith           } else col = in[j];
6178d76821aSHong Zhang           nonew = b->nonew;
618d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
6191eb62cbbSBarry Smith         }
6201eb62cbbSBarry Smith       }
6215ef9f2a5SBarry Smith     } else {
62228b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
62390f02eecSBarry Smith       if (!aij->donotstash) {
6245080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
625d36fbae8SSatish Balay         if (roworiented) {
6268e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
627d36fbae8SSatish Balay         } else {
6288e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6294b0e389bSBarry Smith         }
6301eb62cbbSBarry Smith       }
6318a729477SBarry Smith     }
63290f02eecSBarry Smith   }
6335519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6368a729477SBarry Smith }
6378a729477SBarry Smith 
6382b08fdbeSandi selinger /*
639904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6402b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
641904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6422b08fdbeSandi selinger */
643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
644d71ae5a4SJacob Faibussowitsch {
645904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
646904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6474cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
648904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
649904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
650904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
651904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
652904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6536dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
654904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
655904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
656904d1e70Sandi selinger 
657904d1e70Sandi selinger   PetscFunctionBegin;
658904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
659904d1e70Sandi selinger   for (j = 0; j < am; j++) {
660904d1e70Sandi selinger     dnz = onz = 0;
661904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6626dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
663904d1e70Sandi selinger       /* If column is in the diagonal */
664904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
665904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
666904d1e70Sandi selinger         dnz++;
667904d1e70Sandi selinger       } else { /* off-diagonal entries */
668904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
669904d1e70Sandi selinger         onz++;
670904d1e70Sandi selinger       }
671904d1e70Sandi selinger     }
672904d1e70Sandi selinger     ailen[j] = dnz;
673904d1e70Sandi selinger     bilen[j] = onz;
674904d1e70Sandi selinger   }
6753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
676904d1e70Sandi selinger }
677904d1e70Sandi selinger 
678904d1e70Sandi selinger /*
679904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
680904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6811de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6821de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6831de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
684904d1e70Sandi selinger */
685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
686d71ae5a4SJacob Faibussowitsch {
6873a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6883a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6894cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
690f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6913a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6923a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6933a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6943a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6953a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6966dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6971de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
698904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
699904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
7003a063d27Sandi selinger 
7013a063d27Sandi selinger   PetscFunctionBegin;
7023a063d27Sandi selinger   /* Iterate over all rows of the matrix */
7033a063d27Sandi selinger   for (j = 0; j < am; j++) {
704904d1e70Sandi selinger     dnz_row = onz_row = 0;
705904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
706904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
707e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
708e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
709ae8e66a0Sandi selinger       /* If column is in the diagonal */
7103a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
711904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
712904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
713904d1e70Sandi selinger         dnz_row++;
714ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
715904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
716904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
717904d1e70Sandi selinger         onz_row++;
7183a063d27Sandi selinger       }
7193a063d27Sandi selinger     }
720904d1e70Sandi selinger     ailen[j] = dnz_row;
721904d1e70Sandi selinger     bilen[j] = onz_row;
7223a063d27Sandi selinger   }
7233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7243a063d27Sandi selinger }
7253a063d27Sandi selinger 
726ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
727d71ae5a4SJacob Faibussowitsch {
728b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
729d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
730d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
731b49de8d1SLois Curfman McInnes 
7323a40ed3dSBarry Smith   PetscFunctionBegin;
733b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
73454c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
73554c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
73685835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
737b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
738b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
73954c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
74054c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
741b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
742b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7439566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
744fa852ad4SSatish Balay       } else {
74548a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
746aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
747eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
748fa46199cSSatish Balay         col--;
749b1fc9764SSatish Balay #else
750905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
751b1fc9764SSatish Balay #endif
752e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
75348a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
754b49de8d1SLois Curfman McInnes       }
755b49de8d1SLois Curfman McInnes     }
756b49de8d1SLois Curfman McInnes   }
7573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
758b49de8d1SLois Curfman McInnes }
759bc5ccf88SSatish Balay 
760ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
761d71ae5a4SJacob Faibussowitsch {
762bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
763b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
764bc5ccf88SSatish Balay 
765bc5ccf88SSatish Balay   PetscFunctionBegin;
7663ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
767bc5ccf88SSatish Balay 
7689566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7699566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7709566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
772bc5ccf88SSatish Balay }
773bc5ccf88SSatish Balay 
774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
775d71ae5a4SJacob Faibussowitsch {
776bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
777b1d57f15SBarry Smith   PetscMPIInt  n;
778b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
779e44c0bd4SBarry Smith   PetscInt    *row, *col;
780ace3abfcSBarry Smith   PetscBool    other_disassembled;
78187828ca2SBarry Smith   PetscScalar *val;
782bc5ccf88SSatish Balay 
78391c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7846e111a19SKarl Rupp 
785bc5ccf88SSatish Balay   PetscFunctionBegin;
7864cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
787a2d1c673SSatish Balay     while (1) {
7889566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
789a2d1c673SSatish Balay       if (!flg) break;
790a2d1c673SSatish Balay 
791bc5ccf88SSatish Balay       for (i = 0; i < n;) {
792bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7932205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7942205254eSKarl Rupp           if (row[j] != rstart) break;
7952205254eSKarl Rupp         }
796bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
797bc5ccf88SSatish Balay         else ncols = n - i;
798bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7999566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
800bc5ccf88SSatish Balay         i = j;
801bc5ccf88SSatish Balay       }
802bc5ccf88SSatish Balay     }
8039566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
804bc5ccf88SSatish Balay   }
8058c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
806c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
8079ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
8089ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
8099566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
8109566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
8119ecce9b1SRichard Tran Mills   }
812e2cf4d64SStefano Zampini #endif
8139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
8149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
815bc5ccf88SSatish Balay 
816bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
817071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
818bc5ccf88SSatish Balay   /*
819bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
820bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
821bc5ccf88SSatish Balay   */
822bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
823462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
82435cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
825eb14dd14SAlex Lindsay       PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
826ad59fb31SSatish Balay     }
827ad59fb31SSatish Balay   }
82848a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8299566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8308c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
831c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
832e2cf4d64SStefano Zampini #endif
8339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
835bc5ccf88SSatish Balay 
8369566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8372205254eSKarl Rupp 
838f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
839a30b2313SHong Zhang 
8409566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
841e56f5c9eSBarry Smith 
8424f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
843f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
844e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
845462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
846e56f5c9eSBarry Smith   }
8478c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
848c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
849e2cf4d64SStefano Zampini #endif
8503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
851bc5ccf88SSatish Balay }
852bc5ccf88SSatish Balay 
853ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
854d71ae5a4SJacob Faibussowitsch {
85544a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8563a40ed3dSBarry Smith 
8573a40ed3dSBarry Smith   PetscFunctionBegin;
8589566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8599566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8611eb62cbbSBarry Smith }
8621eb62cbbSBarry Smith 
863ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
864d71ae5a4SJacob Faibussowitsch {
8651b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8661b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8676e520ac8SStefano Zampini   PetscInt    r, len;
8689939a2d1SBarry Smith   PetscBool   cong;
8691eb62cbbSBarry Smith 
8703a40ed3dSBarry Smith   PetscFunctionBegin;
8716e520ac8SStefano Zampini   /* get locally owned rows */
8729566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8739566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
874dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
87597b48c8fSBarry Smith   if (x && b) {
8761b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8771b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8781b1dd7adSMatthew G. Knepley 
87928b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8809566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8819566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8821b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8839566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8849566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
88597b48c8fSBarry Smith   }
886a92ad425SStefano Zampini 
887a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8889566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8899566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
890a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
891a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
892a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
893a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
894a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
895a92ad425SStefano Zampini 
896a92ad425SStefano Zampini     nnwA = aijA->nonew;
897a92ad425SStefano Zampini     nnwB = aijB->nonew;
898a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
899a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
900a92ad425SStefano Zampini     if (!nnzA) {
9019566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
902a92ad425SStefano Zampini       aijA->nonew = 0;
903a92ad425SStefano Zampini     }
904a92ad425SStefano Zampini     if (!nnzB) {
9059566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
906a92ad425SStefano Zampini       aijB->nonew = 0;
907a92ad425SStefano Zampini     }
908a92ad425SStefano Zampini     /* Must zero here before the next loop */
9099566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9109566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9111b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
9121b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
913a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
9149566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
915e2d53e46SBarry Smith     }
916a92ad425SStefano Zampini     aijA->nonew = nnwA;
917a92ad425SStefano Zampini     aijB->nonew = nnwB;
9186eb55b6aSBarry Smith   } else {
9199566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9209566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9216eb55b6aSBarry Smith   }
9229566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9254f9cfa9eSBarry Smith 
9269939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
927f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9289939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
929462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9309939a2d1SBarry Smith   }
9313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9321eb62cbbSBarry Smith }
9331eb62cbbSBarry Smith 
934ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
935d71ae5a4SJacob Faibussowitsch {
9369c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9376497c311SBarry Smith   PetscInt           n = A->rmap->n;
938131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
93954bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
940131c27b5Sprj-   PetscMPIInt        p = 0;
94154bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
94254bd4135SMatthew G. Knepley   PetscSF            sf;
9439c7c4993SBarry Smith   const PetscScalar *xx;
944fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
945564f14d6SBarry Smith   Vec                xmask, lmask;
946564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
947564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
948564f14d6SBarry Smith   PetscScalar       *aa;
9499c7c4993SBarry Smith 
9509c7c4993SBarry Smith   PetscFunctionBegin;
95154bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
95354bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
95554bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
95654bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
957aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9585ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9599566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9605ba17502SJed Brown     }
96154bd4135SMatthew G. Knepley     rrows[r].rank  = p;
96254bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9639c7c4993SBarry Smith   }
9649566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9659566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
96654bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9679566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9689566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9699566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
97054bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9719371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9729371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
973564f14d6SBarry Smith   /* zero diagonal part of matrix */
9749566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9754cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9769566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9779566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9789566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
97954bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9809566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9819566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9829566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9839566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
984a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
985a92ad425SStefano Zampini     PetscBool cong;
986a92ad425SStefano Zampini 
9879566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
98828b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9899566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9909566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9919566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9929566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
993377aa5a1SBarry Smith   }
9949566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9954cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
997564f14d6SBarry Smith   ii = aij->i;
9988e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
999564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
1000564f14d6SBarry Smith   if (aij->compressedrow.use) {
1001564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
1002564f14d6SBarry Smith     ii   = aij->compressedrow.i;
1003564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
1004564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1005564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1006564f14d6SBarry Smith       aj = aij->j + ii[i];
1007fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1008564f14d6SBarry Smith 
1009564f14d6SBarry Smith       for (j = 0; j < n; j++) {
101025266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1011377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
1012564f14d6SBarry Smith           *aa = 0.0;
1013564f14d6SBarry Smith         }
1014564f14d6SBarry Smith         aa++;
1015564f14d6SBarry Smith         aj++;
1016564f14d6SBarry Smith       }
1017564f14d6SBarry Smith       ridx++;
1018564f14d6SBarry Smith     }
1019564f14d6SBarry Smith   } else { /* do not use compressed row format */
1020564f14d6SBarry Smith     m = l->B->rmap->n;
1021564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1022564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1023564f14d6SBarry Smith       aj = aij->j + ii[i];
1024fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1025564f14d6SBarry Smith       for (j = 0; j < n; j++) {
102625266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1027377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1028564f14d6SBarry Smith           *aa = 0.0;
1029564f14d6SBarry Smith         }
1030564f14d6SBarry Smith         aa++;
1031564f14d6SBarry Smith         aj++;
1032564f14d6SBarry Smith       }
1033564f14d6SBarry Smith     }
1034564f14d6SBarry Smith   }
1035a92ad425SStefano Zampini   if (x && b) {
10369566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10379566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1038377aa5a1SBarry Smith   }
10399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10419566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10429566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10434f9cfa9eSBarry Smith 
10444f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1045f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10464f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1047462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10484f9cfa9eSBarry Smith   }
10493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10509c7c4993SBarry Smith }
10519c7c4993SBarry Smith 
1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1053d71ae5a4SJacob Faibussowitsch {
1054416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1055b1d57f15SBarry Smith   PetscInt    nt;
105619b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1057416022c9SBarry Smith 
10583a40ed3dSBarry Smith   PetscFunctionBegin;
10599566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
106008401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10619566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1062296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10639566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1064296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10661eb62cbbSBarry Smith }
10671eb62cbbSBarry Smith 
1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1069d71ae5a4SJacob Faibussowitsch {
1070bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1071bd0c2dcbSBarry Smith 
1072bd0c2dcbSBarry Smith   PetscFunctionBegin;
10739566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1075bd0c2dcbSBarry Smith }
1076bd0c2dcbSBarry Smith 
1077ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1078d71ae5a4SJacob Faibussowitsch {
1079416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
108001ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10813a40ed3dSBarry Smith 
10823a40ed3dSBarry Smith   PetscFunctionBegin;
10839566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10849566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10859566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10869566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1088da3a660dSBarry Smith }
1089da3a660dSBarry Smith 
1090ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1091d71ae5a4SJacob Faibussowitsch {
1092416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1093da3a660dSBarry Smith 
10943a40ed3dSBarry Smith   PetscFunctionBegin;
1095da3a660dSBarry Smith   /* do nondiagonal part */
10969566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1097da3a660dSBarry Smith   /* do local part */
10989566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10999613dc34SJunchao Zhang   /* add partial results together */
11009566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11019566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1103da3a660dSBarry Smith }
1104da3a660dSBarry Smith 
1105ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1106d71ae5a4SJacob Faibussowitsch {
11074f423910Svictorle   MPI_Comm    comm;
1108ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1109ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1110cd0d46ebSvictorle   IS          Me, Notme;
1111b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
111254d735aeSStefano Zampini   PetscBool   lf;
1113b1d57f15SBarry Smith   PetscMPIInt size;
1114cd0d46ebSvictorle 
1115cd0d46ebSvictorle   PetscFunctionBegin;
111642e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
11179566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
1118462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
11193ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11209566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11223ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
112342e5f5b4Svictorle 
11247dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11259566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11269566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1128cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1129cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11309566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11319566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11329566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
113366501d38Svictorle   Aoff = Aoffs[0];
11349566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
113566501d38Svictorle   Boff = Boffs[0];
11369566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11379566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11389566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11399566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11409566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11419566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1143cd0d46ebSvictorle }
1144cd0d46ebSvictorle 
1145ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1146d71ae5a4SJacob Faibussowitsch {
1147416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1148da3a660dSBarry Smith 
11493a40ed3dSBarry Smith   PetscFunctionBegin;
1150da3a660dSBarry Smith   /* do nondiagonal part */
11519566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1152da3a660dSBarry Smith   /* do local part */
11539566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11549613dc34SJunchao Zhang   /* add partial results together */
11559566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11569566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1158da3a660dSBarry Smith }
1159da3a660dSBarry Smith 
11601eb62cbbSBarry Smith /*
11611eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11621eb62cbbSBarry Smith    diagonal block
11631eb62cbbSBarry Smith */
1164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1165d71ae5a4SJacob Faibussowitsch {
1166416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11673a40ed3dSBarry Smith 
11683a40ed3dSBarry Smith   PetscFunctionBegin;
116908401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1170aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11719566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11731eb62cbbSBarry Smith }
11741eb62cbbSBarry Smith 
1175ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1176d71ae5a4SJacob Faibussowitsch {
1177052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11783a40ed3dSBarry Smith 
11793a40ed3dSBarry Smith   PetscFunctionBegin;
11809566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11819566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1183052efed2SBarry Smith }
1184052efed2SBarry Smith 
1185ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1186d71ae5a4SJacob Faibussowitsch {
11878e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11888e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11898e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11903ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11912e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
119217a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
119317a3732bSBarry Smith   PetscInt64         nz, hnz;
11943ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11953ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11963ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
119717a3732bSBarry Smith   PetscMPIInt        rank;
11988e2fed03SBarry Smith 
11998e2fed03SBarry Smith   PetscFunctionBegin;
12009566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
12013ea6fe3dSLisandro Dalcin 
12023ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
12033ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
12043ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
12053ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
12063ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
12078e2fed03SBarry Smith   nz = A->nz + B->nz;
12083ea6fe3dSLisandro Dalcin 
12093ea6fe3dSLisandro Dalcin   /* write matrix header */
12100700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
12119371c9d4SSatish Balay   header[1] = M;
12129371c9d4SSatish Balay   header[2] = N;
121317a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
121417a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
1215835f2295SStefano Zampini   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
12169566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12178e2fed03SBarry Smith 
12183ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12203ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12219566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12229566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12238e2fed03SBarry Smith 
12243ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12263ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12273ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12283ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12293ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12308e2fed03SBarry Smith     }
12319371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12329371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12338e2fed03SBarry Smith   }
123417a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12359566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12369566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12378e2fed03SBarry Smith 
12383ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12423ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12433ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12443ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12452e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12468e2fed03SBarry Smith     }
12479371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12489371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12498e2fed03SBarry Smith   }
12509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
125217a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12539566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12549566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12558e2fed03SBarry Smith 
12563ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12579566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12598e2fed03SBarry Smith }
12608e2fed03SBarry Smith 
12619804daf3SBarry Smith #include <petscdraw.h>
1262ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1263d71ae5a4SJacob Faibussowitsch {
126444a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
126532dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1266ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1267b0a32e0cSBarry Smith   PetscViewer       sviewer;
1268f3ef73ceSBarry Smith   PetscViewerFormat format;
1269416022c9SBarry Smith 
12703a40ed3dSBarry Smith   PetscFunctionBegin;
12719566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12729566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12739566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
127432077d6dSBarry Smith   if (iascii) {
12759566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1276ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
12771690c2aeSBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12789566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12799566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1280835f2295SStefano Zampini       for (i = 0; i < size; i++) {
1281ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1282ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1283ef5fdb51SBarry Smith         navg += nz[i];
1284ef5fdb51SBarry Smith       }
12859566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1286ef5fdb51SBarry Smith       navg = navg / size;
12879566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12883ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1289ef5fdb51SBarry Smith     }
12909566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1291456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12924e220ebcSLois Curfman McInnes       MatInfo   info;
12936335e310SSatish Balay       PetscInt *inodes = NULL;
1294923f20ffSKris Buschelman 
12959566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12969566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12979566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12989566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1299923f20ffSKris Buschelman       if (!inodes) {
13009371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
1301835f2295SStefano Zampini                                                      info.memory));
13026831982aSBarry Smith       } else {
1303835f2295SStefano Zampini         PetscCall(
1304835f2295SStefano Zampini           PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory));
13056831982aSBarry Smith       }
13069566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
13079566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13089566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
13099566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13109566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
13119566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
13129566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
13139566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
13143ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1315fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1316923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13179566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1318923f20ffSKris Buschelman       if (inodes) {
13199566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1320d38fa0fbSBarry Smith       } else {
13219566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1322d38fa0fbSBarry Smith       }
13233ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13244aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13253ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
132608480c60SBarry Smith     }
13278e2fed03SBarry Smith   } else if (isbinary) {
13288e2fed03SBarry Smith     if (size == 1) {
13299566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13309566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13318e2fed03SBarry Smith     } else {
13329566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13338e2fed03SBarry Smith     }
13343ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
133571e56450SStefano Zampini   } else if (iascii && size == 1) {
13369566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13379566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13383ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13390f5bd95cSBarry Smith   } else if (isdraw) {
1340b0a32e0cSBarry Smith     PetscDraw draw;
1341ace3abfcSBarry Smith     PetscBool isnull;
13429566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13439566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13443ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
134519bcc07fSBarry Smith   }
134619bcc07fSBarry Smith 
134771e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
134871e56450SStefano Zampini     Mat A = NULL, Av;
134971e56450SStefano Zampini     IS  isrow, iscol;
13502ee70a88SLois Curfman McInnes 
13519566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13529566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13539566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13549566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
135571e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
135671e56450SStefano Zampini     /*
135771e56450SStefano Zampini     Mat *AA, A = NULL, Av;
135871e56450SStefano Zampini     IS  isrow,iscol;
135971e56450SStefano Zampini 
13609566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13619566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13629566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1363dd400576SPatrick Sanan     if (rank == 0) {
13649566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
136571e56450SStefano Zampini        A    = AA[0];
136671e56450SStefano Zampini        Av   = AA[0];
136795373324SBarry Smith     }
13689566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
136971e56450SStefano Zampini */
13709566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13719566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
137255843e3eSBarry Smith     /*
137355843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1374b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
137555843e3eSBarry Smith     */
13769566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1377dd400576SPatrick Sanan     if (rank == 0) {
137848a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13799566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
138095373324SBarry Smith     }
13819566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13829566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
138395373324SBarry Smith   }
13843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13851eb62cbbSBarry Smith }
13861eb62cbbSBarry Smith 
1387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1388d71ae5a4SJacob Faibussowitsch {
1389ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1390416022c9SBarry Smith 
13913a40ed3dSBarry Smith   PetscFunctionBegin;
13929566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13939566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13949566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13959566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
139648a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1398416022c9SBarry Smith }
1399416022c9SBarry Smith 
1400ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1401d71ae5a4SJacob Faibussowitsch {
140244a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1403f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1404ace3abfcSBarry Smith   PetscBool   hasop;
14058a729477SBarry Smith 
14063a40ed3dSBarry Smith   PetscFunctionBegin;
1407a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
14089566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14093ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1410a2b30743SBarry Smith   }
1411a2b30743SBarry Smith 
141248a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
14134e980039SJed Brown 
1414c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1415da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14169566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14172798e883SHong Zhang       its--;
1418da3a660dSBarry Smith     }
14192798e883SHong Zhang 
14202798e883SHong Zhang     while (its--) {
14219566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14229566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14232798e883SHong Zhang 
1424c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14259566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14269566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14272798e883SHong Zhang 
1428c14dc6b6SHong Zhang       /* local sweep */
14299566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14302798e883SHong Zhang     }
14313a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1432da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14339566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14342798e883SHong Zhang       its--;
1435da3a660dSBarry Smith     }
14362798e883SHong Zhang     while (its--) {
14379566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14389566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14392798e883SHong Zhang 
1440c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14419566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14429566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1443c14dc6b6SHong Zhang 
1444c14dc6b6SHong Zhang       /* local sweep */
14459566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14462798e883SHong Zhang     }
14473a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1448da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14499566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14502798e883SHong Zhang       its--;
1451da3a660dSBarry Smith     }
14522798e883SHong Zhang     while (its--) {
14539566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14549566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14552798e883SHong Zhang 
1456c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14579566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14589566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14592798e883SHong Zhang 
1460c14dc6b6SHong Zhang       /* local sweep */
14619566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14622798e883SHong Zhang     }
1463a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1464a7420bb7SBarry Smith     Vec xx1;
1465a7420bb7SBarry Smith 
14669566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14679566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1468a7420bb7SBarry Smith 
14699566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14709566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1471a7420bb7SBarry Smith     if (!mat->diag) {
14729566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14739566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1474a7420bb7SBarry Smith     }
14759566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1476bd0c2dcbSBarry Smith     if (hasop) {
14779566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1478bd0c2dcbSBarry Smith     } else {
14799566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1480bd0c2dcbSBarry Smith     }
14819566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1482887ee2caSBarry Smith 
14839566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1484a7420bb7SBarry Smith 
1485a7420bb7SBarry Smith     /* local sweep */
14869566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14879566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14889566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1489ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1490c14dc6b6SHong Zhang 
14919566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1492a0808db4SHong Zhang 
14937b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14958a729477SBarry Smith }
1496a66be287SLois Curfman McInnes 
1497ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1498d71ae5a4SJacob Faibussowitsch {
149972e6a0cfSJed Brown   Mat             aA, aB, Aperm;
150072e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
150172e6a0cfSJed Brown   PetscScalar    *aa, *ba;
150272e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
150372e6a0cfSJed Brown   PetscSF         rowsf, sf;
15040298fd71SBarry Smith   IS              parcolp = NULL;
150572e6a0cfSJed Brown   PetscBool       done;
150642e855d1Svictor 
150742e855d1Svictor   PetscFunctionBegin;
15089566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
15099566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
15109566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
15119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
151272e6a0cfSJed Brown 
151372e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
15149566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
15159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
15169566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
151772e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15199566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
152072e6a0cfSJed Brown 
152172e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15249566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
152572e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15269566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15279566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15289566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152972e6a0cfSJed Brown 
15309566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15319566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15329566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
153372e6a0cfSJed Brown 
153472e6a0cfSJed Brown   /* Find out where my gcols should go */
15359566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15379566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15389566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15399566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15409566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15419566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15429566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
154372e6a0cfSJed Brown 
15449566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15459566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15469566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
154772e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1548131c27b5Sprj-     PetscInt    row = rdest[i];
1549131c27b5Sprj-     PetscMPIInt rowner;
15509566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
155172e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1552131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1553131c27b5Sprj-       PetscMPIInt cowner;
15549566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
155572e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155672e6a0cfSJed Brown       else onnz[i]++;
155772e6a0cfSJed Brown     }
155872e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1559131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1560131c27b5Sprj-       PetscMPIInt cowner;
15619566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
156272e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
156372e6a0cfSJed Brown       else onnz[i]++;
156472e6a0cfSJed Brown     }
156572e6a0cfSJed Brown   }
15669566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15679566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15689566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15699566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15709566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
157172e6a0cfSJed Brown 
15729566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15739566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15749566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
157572e6a0cfSJed Brown   for (i = 0; i < m; i++) {
157672e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1577970468b0SJed Brown     PetscInt  j0, rowlen;
157872e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1579970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1580970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15819566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1582970468b0SJed Brown     }
158372e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1584970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1585970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15869566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1587970468b0SJed Brown     }
158872e6a0cfSJed Brown   }
15899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15919566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15929566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15959566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15969566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15979566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15989566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
159972e6a0cfSJed Brown   *B = Aperm;
16003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
160142e855d1Svictor }
160242e855d1Svictor 
1603ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1604d71ae5a4SJacob Faibussowitsch {
1605c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1606c5e4d11fSDmitry Karpeev 
1607c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
16089566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1609c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
16103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1611c5e4d11fSDmitry Karpeev }
1612c5e4d11fSDmitry Karpeev 
1613ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1614d71ae5a4SJacob Faibussowitsch {
1615a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1616a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16173966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1618a66be287SLois Curfman McInnes 
16193a40ed3dSBarry Smith   PetscFunctionBegin;
16204e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16219566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16222205254eSKarl Rupp 
16239371c9d4SSatish Balay   isend[0] = info->nz_used;
16249371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16259371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16269371c9d4SSatish Balay   isend[3] = info->memory;
16279371c9d4SSatish Balay   isend[4] = info->mallocs;
16282205254eSKarl Rupp 
16299566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16302205254eSKarl Rupp 
16319371c9d4SSatish Balay   isend[0] += info->nz_used;
16329371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16339371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16349371c9d4SSatish Balay   isend[3] += info->memory;
16359371c9d4SSatish Balay   isend[4] += info->mallocs;
1636a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16374e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16384e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16394e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16404e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16414e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1642a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1643462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16442205254eSKarl Rupp 
16454e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16464e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16474e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16484e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16494e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1650a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1651462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16522205254eSKarl Rupp 
16534e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16544e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16554e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16564e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16574e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1658a66be287SLois Curfman McInnes   }
16594e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16604e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16614e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1663a66be287SLois Curfman McInnes }
1664a66be287SLois Curfman McInnes 
1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1666d71ae5a4SJacob Faibussowitsch {
1667c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1668c74985f6SBarry Smith 
16693a40ed3dSBarry Smith   PetscFunctionBegin;
167012c028f9SKris Buschelman   switch (op) {
1671512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
167212c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
167328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1674a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
167512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16760ad02fcaSStefano Zampini   case MAT_USE_INODES:
167712c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16781a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1679fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16809566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16819566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168212c028f9SKris Buschelman     break;
168312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
168443674050SBarry Smith     MatCheckPreallocated(A, 1);
16854e0d8c25SBarry Smith     a->roworiented = flg;
16862205254eSKarl Rupp 
16879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16889566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168912c028f9SKris Buschelman     break;
1690d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1691d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1692d71ae5a4SJacob Faibussowitsch     break;
1693c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1694ffa07934SHong Zhang   case MAT_SPD:
169577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
169677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1697bf108f30SBarry Smith   case MAT_HERMITIAN:
1698bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1699b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1700b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1701b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
17029725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
170377e54ba9SKris Buschelman     break;
1704d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1705d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1706d71ae5a4SJacob Faibussowitsch     break;
1707d71ae5a4SJacob Faibussowitsch   default:
1708888c827cSStefano Zampini     break;
17093a40ed3dSBarry Smith   }
17103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1711c74985f6SBarry Smith }
1712c74985f6SBarry Smith 
1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1714d71ae5a4SJacob Faibussowitsch {
1715154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
171687828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1717d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1718d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1719b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
172039e00950SLois Curfman McInnes 
17213a40ed3dSBarry Smith   PetscFunctionBegin;
172228b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17237a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17247a0afa10SBarry Smith 
172570f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17267a0afa10SBarry Smith     /*
17277a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17287a0afa10SBarry Smith     */
17297a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1730b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1731d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17327a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17332205254eSKarl Rupp       if (max < tmp) max = tmp;
17347a0afa10SBarry Smith     }
17359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17367a0afa10SBarry Smith   }
17377a0afa10SBarry Smith 
1738aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1739abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
174039e00950SLois Curfman McInnes 
17419371c9d4SSatish Balay   pvA = &vworkA;
17429371c9d4SSatish Balay   pcA = &cworkA;
17439371c9d4SSatish Balay   pvB = &vworkB;
17449371c9d4SSatish Balay   pcB = &cworkB;
17459371c9d4SSatish Balay   if (!v) {
17469371c9d4SSatish Balay     pvA = NULL;
17479371c9d4SSatish Balay     pvB = NULL;
17489371c9d4SSatish Balay   }
17499371c9d4SSatish Balay   if (!idx) {
17509371c9d4SSatish Balay     pcA = NULL;
17519371c9d4SSatish Balay     if (!v) pcB = NULL;
17529371c9d4SSatish Balay   }
17539566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17549566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1755154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1756154123eaSLois Curfman McInnes 
175770f0671dSBarry Smith   cmap = mat->garray;
1758154123eaSLois Curfman McInnes   if (v || idx) {
1759154123eaSLois Curfman McInnes     if (nztot) {
1760154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1761b1d57f15SBarry Smith       PetscInt imark = -1;
1762154123eaSLois Curfman McInnes       if (v) {
176370f0671dSBarry Smith         *v = v_p = mat->rowvalues;
176439e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
176570f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1766154123eaSLois Curfman McInnes           else break;
1767154123eaSLois Curfman McInnes         }
1768154123eaSLois Curfman McInnes         imark = i;
176970f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
177070f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1771154123eaSLois Curfman McInnes       }
1772154123eaSLois Curfman McInnes       if (idx) {
177370f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
177470f0671dSBarry Smith         if (imark > -1) {
1775ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
177670f0671dSBarry Smith         } else {
1777154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
177870f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1779154123eaSLois Curfman McInnes             else break;
1780154123eaSLois Curfman McInnes           }
1781154123eaSLois Curfman McInnes           imark = i;
178270f0671dSBarry Smith         }
178370f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
178470f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
178539e00950SLois Curfman McInnes       }
17863f97c4b0SBarry Smith     } else {
1787f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1788f4259b30SLisandro Dalcin       if (v) *v = NULL;
17891ca473b0SSatish Balay     }
1790154123eaSLois Curfman McInnes   }
179139e00950SLois Curfman McInnes   *nz = nztot;
17929566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17939566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179539e00950SLois Curfman McInnes }
179639e00950SLois Curfman McInnes 
1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1798d71ae5a4SJacob Faibussowitsch {
17997a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
18003a40ed3dSBarry Smith 
18013a40ed3dSBarry Smith   PetscFunctionBegin;
180228b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
18037a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
18043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
180539e00950SLois Curfman McInnes }
180639e00950SLois Curfman McInnes 
1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1808d71ae5a4SJacob Faibussowitsch {
1809855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1810ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1811d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1812329f5518SBarry Smith   PetscReal        sum = 0.0;
1813fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
181404ca555eSLois Curfman McInnes 
18153a40ed3dSBarry Smith   PetscFunctionBegin;
181617699dbbSLois Curfman McInnes   if (aij->size == 1) {
18179566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
181837fa93a5SLois Curfman McInnes   } else {
18199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
182104ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1822fff043a9SJunchao Zhang       v = amata;
182304ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18249371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18259371c9d4SSatish Balay         v++;
182604ca555eSLois Curfman McInnes       }
1827fff043a9SJunchao Zhang       v = bmata;
182804ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18299371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18309371c9d4SSatish Balay         v++;
183104ca555eSLois Curfman McInnes       }
1832462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18338f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18349566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18353a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1836e91c04dfSPierre Jolivet       PetscReal *tmp;
1837b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18389566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
183904ca555eSLois Curfman McInnes       *norm = 0.0;
18409371c9d4SSatish Balay       v     = amata;
18419371c9d4SSatish Balay       jj    = amat->j;
184204ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18439371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18449371c9d4SSatish Balay         v++;
184504ca555eSLois Curfman McInnes       }
18469371c9d4SSatish Balay       v  = bmata;
18479371c9d4SSatish Balay       jj = bmat->j;
184804ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18499371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18509371c9d4SSatish Balay         v++;
185104ca555eSLois Curfman McInnes       }
1852e91c04dfSPierre Jolivet       PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1853d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
1854e91c04dfSPierre Jolivet         if (tmp[j] > *norm) *norm = tmp[j];
185504ca555eSLois Curfman McInnes       }
18569566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18579566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18583a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1859329f5518SBarry Smith       PetscReal ntemp = 0.0;
1860d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18618e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
186204ca555eSLois Curfman McInnes         sum = 0.0;
186304ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18649371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18659371c9d4SSatish Balay           v++;
186604ca555eSLois Curfman McInnes         }
18678e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
186804ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18699371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18709371c9d4SSatish Balay           v++;
187104ca555eSLois Curfman McInnes         }
1872515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
187304ca555eSLois Curfman McInnes       }
1874462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18759566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1876ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18779566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18789566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
187937fa93a5SLois Curfman McInnes   }
18803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1881855ac2c5SLois Curfman McInnes }
1882855ac2c5SLois Curfman McInnes 
1883ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1884d71ae5a4SJacob Faibussowitsch {
1885a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1886a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1887071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1888071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1889a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1890ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1891b7c46309SBarry Smith 
18923a40ed3dSBarry Smith   PetscFunctionBegin;
18937fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18949371c9d4SSatish Balay   ma = A->rmap->n;
18959371c9d4SSatish Balay   na = A->cmap->n;
18969371c9d4SSatish Balay   mb = a->B->rmap->n;
18979371c9d4SSatish Balay   nb = a->B->cmap->n;
18989371c9d4SSatish Balay   ai = Aloc->i;
18999371c9d4SSatish Balay   aj = Aloc->j;
19009371c9d4SSatish Balay   bi = Bloc->i;
19019371c9d4SSatish Balay   bj = Bloc->j;
1902fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
190380bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
190480bcc5a1SJed Brown     PetscSFNode         *oloc;
1905713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
190680bcc5a1SJed Brown 
19079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
190880bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19099566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1910cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
191180bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19129566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
191380bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
191480bcc5a1SJed Brown     /* map those to global */
19159566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19169566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19179566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19189566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
191957168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
192057168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19219566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1922d4bb536fSBarry Smith 
19239566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19249566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
192558b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(B, A->cmap->bs, A->rmap->bs));
19269566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19279566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19289566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1929fc4dec0aSBarry Smith   } else {
1930fc4dec0aSBarry Smith     B = *matout;
19319566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1932fc4dec0aSBarry Smith   }
1933b7c46309SBarry Smith 
1934f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1935a8661f62Sandi selinger   A_diag      = a->A;
1936a8661f62Sandi selinger   B_diag      = &b->A;
1937a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1938a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1939a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1940a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1941f79cb1a0Sandi selinger 
1942f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1943ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1944f79cb1a0Sandi selinger 
19454cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1946a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19477fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19489566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1949f79cb1a0Sandi selinger 
1950b7c46309SBarry Smith   /* copy over the B part */
19519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1953ce496241SStefano Zampini   pbv = bv;
1954d0f46423SBarry Smith   row = A->rmap->rstart;
19552205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
195661a2fbbaSHong Zhang   cols_tmp = cols;
1957da668accSHong Zhang   for (i = 0; i < mb; i++) {
1958da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19599566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19602205254eSKarl Rupp     row++;
1961720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1962720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1963b7c46309SBarry Smith   }
19649566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1966fc73b1b3SBarry Smith 
19679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1969cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19700de55854SLois Curfman McInnes     *matout = B;
19710de55854SLois Curfman McInnes   } else {
19729566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19730de55854SLois Curfman McInnes   }
19743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1975b7c46309SBarry Smith }
1976b7c46309SBarry Smith 
1977ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1978d71ae5a4SJacob Faibussowitsch {
19794b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19804b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1981b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1982a008b906SSatish Balay 
19833a40ed3dSBarry Smith   PetscFunctionBegin;
19849566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19854b967eb1SSatish Balay   if (rr) {
19869566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
198708401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19884b967eb1SSatish Balay     /* Overlap communication with computation. */
19899566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1990a008b906SSatish Balay   }
19914b967eb1SSatish Balay   if (ll) {
19929566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
199308401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1994dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19954b967eb1SSatish Balay   }
19964b967eb1SSatish Balay   /* scale  the diagonal block */
1997dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19984b967eb1SSatish Balay 
19994b967eb1SSatish Balay   if (rr) {
20004b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
20019566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
2002dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
20034b967eb1SSatish Balay   }
20043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2005a008b906SSatish Balay }
2006a008b906SSatish Balay 
2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2008d71ae5a4SJacob Faibussowitsch {
2009bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20103a40ed3dSBarry Smith 
20113a40ed3dSBarry Smith   PetscFunctionBegin;
20129566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2014bb5a7306SBarry Smith }
2015bb5a7306SBarry Smith 
2016ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2017d71ae5a4SJacob Faibussowitsch {
2018d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2019d4bb536fSBarry Smith   Mat         a, b, c, d;
2020ace3abfcSBarry Smith   PetscBool   flg;
2021d4bb536fSBarry Smith 
20223a40ed3dSBarry Smith   PetscFunctionBegin;
20239371c9d4SSatish Balay   a = matA->A;
20249371c9d4SSatish Balay   b = matA->B;
20259371c9d4SSatish Balay   c = matB->A;
20269371c9d4SSatish Balay   d = matB->B;
2027d4bb536fSBarry Smith 
20289566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
202948a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
2030462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2032d4bb536fSBarry Smith }
2033d4bb536fSBarry Smith 
2034ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2035d71ae5a4SJacob Faibussowitsch {
2036cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2037cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2038cb5b572fSBarry Smith 
2039cb5b572fSBarry Smith   PetscFunctionBegin;
204033f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
204133f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2042cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2043cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2044cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2045cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2046cb5b572fSBarry Smith        then copying the submatrices */
20479566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2048cb5b572fSBarry Smith   } else {
20499566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20509566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2051cb5b572fSBarry Smith   }
20529566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2054cb5b572fSBarry Smith }
2055cb5b572fSBarry Smith 
2056001ddc4fSHong Zhang /*
2057001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2058001ddc4fSHong Zhang    have different nonzero structure.
2059001ddc4fSHong Zhang */
2060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2061d71ae5a4SJacob Faibussowitsch {
2062001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
206395b7e79eSJed Brown 
206495b7e79eSJed Brown   PetscFunctionBegin;
206595b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
206695b7e79eSJed Brown   for (i = 0; i < m; i++) {
20678e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2068001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2069001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
207095b7e79eSJed Brown     nnz[i] = 0;
207195b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2072001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2073001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
207495b7e79eSJed Brown       nnz[i]++;
207595b7e79eSJed Brown     }
207695b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
207795b7e79eSJed Brown   }
20783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207995b7e79eSJed Brown }
208095b7e79eSJed Brown 
2081001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2082d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2083d71ae5a4SJacob Faibussowitsch {
2084001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2085001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2086001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2087001ddc4fSHong Zhang 
2088001ddc4fSHong Zhang   PetscFunctionBegin;
20899566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2091001ddc4fSHong Zhang }
2092001ddc4fSHong Zhang 
2093ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2094d71ae5a4SJacob Faibussowitsch {
2095ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2096ac90fabeSBarry Smith 
2097ac90fabeSBarry Smith   PetscFunctionBegin;
2098ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
20999566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
21009566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2101ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
21029566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2103ac90fabeSBarry Smith   } else {
21049f5f6813SShri Abhyankar     Mat       B;
21059f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2106d9d719b4SStefano Zampini 
21079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21099566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21109566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21119566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21129566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21139566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21149566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21159566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21169566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21179566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21189566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21199566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2120ac90fabeSBarry Smith   }
21213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2122ac90fabeSBarry Smith }
2123ac90fabeSBarry Smith 
21242726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2125354c94deSBarry Smith 
2126ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2127d71ae5a4SJacob Faibussowitsch {
21285f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21295f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2130354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2131354c94deSBarry Smith 
21329566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21339566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21345f80ce2aSJacob Faibussowitsch   }
21353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2136354c94deSBarry Smith }
2137354c94deSBarry Smith 
2138ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2139d71ae5a4SJacob Faibussowitsch {
214099cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214199cafbc1SBarry Smith 
214299cafbc1SBarry Smith   PetscFunctionBegin;
21439566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21449566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214699cafbc1SBarry Smith }
214799cafbc1SBarry Smith 
2148ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2149d71ae5a4SJacob Faibussowitsch {
215099cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
215199cafbc1SBarry Smith 
215299cafbc1SBarry Smith   PetscFunctionBegin;
21539566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21549566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215699cafbc1SBarry Smith }
215799cafbc1SBarry Smith 
2158ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2159d71ae5a4SJacob Faibussowitsch {
2160c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2161475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
216262e5df07SMark Adams   PetscScalar       *vv;
2163475b8b61SHong Zhang   Vec                vB, vA;
216462e5df07SMark Adams   const PetscScalar *va, *vb;
2165c91732d9SHong Zhang 
2166c91732d9SHong Zhang   PetscFunctionBegin;
2167c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
21689566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2169475b8b61SHong Zhang 
217062e5df07SMark Adams   PetscCall(VecGetArrayRead(vA, &va));
2171c91732d9SHong Zhang   if (idx) {
2172475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2173d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2174c91732d9SHong Zhang     }
2175c91732d9SHong Zhang   }
2176c91732d9SHong Zhang 
2177c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
21789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21799566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2180c91732d9SHong Zhang 
21819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21829566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2183475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2184c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2185475b8b61SHong Zhang       vv[i] = vb[i];
2186c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2187475b8b61SHong Zhang     } else {
2188475b8b61SHong Zhang       vv[i] = va[i];
21899371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2190c91732d9SHong Zhang     }
2191c91732d9SHong Zhang   }
219262e5df07SMark Adams   PetscCall(VecRestoreArrayWrite(v, &vv));
219362e5df07SMark Adams   PetscCall(VecRestoreArrayRead(vA, &va));
21949566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21959566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21979566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2199c91732d9SHong Zhang }
2200c91732d9SHong Zhang 
2201eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2202eede4a3fSMark Adams {
2203eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2204eede4a3fSMark Adams   Vec         vB, vA;
2205eede4a3fSMark Adams 
2206eede4a3fSMark Adams   PetscFunctionBegin;
2207c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
2208eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2209c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
2210eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2211eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2212eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2213eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2214eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2215eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2216eede4a3fSMark Adams }
2217eede4a3fSMark Adams 
2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2219d71ae5a4SJacob Faibussowitsch {
2220f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2221f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2222f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2223f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2224f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2225f07e67edSHong Zhang   Vec                diagV, offdiagV;
2226ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2227ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2228f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2229f07e67edSHong Zhang   Mat                B = mat->B;
2230f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2231c87e5d42SMatthew Knepley 
2232c87e5d42SMatthew Knepley   PetscFunctionBegin;
2233f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2234f07e67edSHong Zhang   if (A->cmap->N == n) {
22359566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22369566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22379566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22389566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22399566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22403ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2241f07e67edSHong Zhang   } else if (n == 0) {
2242f07e67edSHong Zhang     if (m) {
22439566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22449371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22459371c9d4SSatish Balay         a[r] = 0.0;
22469371c9d4SSatish Balay         if (idx) idx[r] = -1;
22479371c9d4SSatish Balay       }
22489566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2249f07e67edSHong Zhang     }
22503ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2251f07e67edSHong Zhang   }
2252f07e67edSHong Zhang 
22539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22549566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22559566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22569566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2257f07e67edSHong Zhang 
2258f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22599566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2260ce496241SStefano Zampini   ba = bav;
2261f07e67edSHong Zhang   bi = b->i;
2262f07e67edSHong Zhang   bj = b->j;
22639566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2264f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2265f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2266f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22679371c9d4SSatish Balay       offdiagA[r]   = *ba;
22689371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2269f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2270f07e67edSHong Zhang       offdiagA[r] = 0.0;
2271f07e67edSHong Zhang 
2272f07e67edSHong Zhang       /* Find first hole in the cmap */
2273f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2274f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2275f07e67edSHong Zhang         if (col > j && j < cstart) {
2276f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2277f07e67edSHong Zhang           break;
2278f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2279f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2280f07e67edSHong Zhang           break;
2281f07e67edSHong Zhang         }
2282f07e67edSHong Zhang       }
22834e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2284f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2285f07e67edSHong Zhang         if (ncols == 0) {
2286f07e67edSHong Zhang           if (cstart) {
2287f07e67edSHong Zhang             offdiagIdx[r] = 0;
2288f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2289f07e67edSHong Zhang         } else { /* ncols > 0 */
2290f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2291f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2292f07e67edSHong Zhang         }
2293f07e67edSHong Zhang       }
2294f07e67edSHong Zhang     }
2295f07e67edSHong Zhang 
2296f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22979371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22989371c9d4SSatish Balay         offdiagA[r]   = *ba;
22999371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
23009371c9d4SSatish Balay       }
23019371c9d4SSatish Balay       ba++;
23029371c9d4SSatish Balay       bj++;
2303f07e67edSHong Zhang     }
2304f07e67edSHong Zhang   }
2305f07e67edSHong Zhang 
23069566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
23079566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2308f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2309f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2310f07e67edSHong Zhang       a[r] = diagA[r];
2311f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2312f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2313f07e67edSHong Zhang       a[r] = diagA[r];
2314c87e5d42SMatthew Knepley       if (idx) {
2315f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2316f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2317f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2318f07e67edSHong Zhang       }
2319f07e67edSHong Zhang     } else {
2320f07e67edSHong Zhang       a[r] = offdiagA[r];
2321f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2322c87e5d42SMatthew Knepley     }
2323c87e5d42SMatthew Knepley   }
23249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23279566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23289566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23299566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23309566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2332c87e5d42SMatthew Knepley }
2333c87e5d42SMatthew Knepley 
2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2335d71ae5a4SJacob Faibussowitsch {
233603bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2337fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2338fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
233903bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
234003bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
234103bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2342ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2343ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2344fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2345fa213d2fSHong Zhang   Mat                B = mat->B;
2346fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
234703bc72f1SMatthew Knepley 
234803bc72f1SMatthew Knepley   PetscFunctionBegin;
2349fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2350fa213d2fSHong Zhang   if (A->cmap->N == n) {
23519566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23529566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23539566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23549566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23559566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23563ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2357fa213d2fSHong Zhang   } else if (n == 0) {
2358fa213d2fSHong Zhang     if (m) {
23599566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23609371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23619371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23629371c9d4SSatish Balay         if (idx) idx[r] = -1;
23639371c9d4SSatish Balay       }
23649566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2365fa213d2fSHong Zhang     }
23663ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2367fa213d2fSHong Zhang   }
2368fa213d2fSHong Zhang 
23699566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23709566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23719566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23729566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2373fa213d2fSHong Zhang 
2374fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23759566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2376ce496241SStefano Zampini   ba = bav;
2377fa213d2fSHong Zhang   bi = b->i;
2378fa213d2fSHong Zhang   bj = b->j;
23799566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2380fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2381fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2382fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23839371c9d4SSatish Balay       offdiagA[r]   = *ba;
23849371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2385fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2386fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2387fa213d2fSHong Zhang 
2388fa213d2fSHong Zhang       /* Find first hole in the cmap */
2389fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2390fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2391fa213d2fSHong Zhang         if (col > j && j < cstart) {
2392fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2393fa213d2fSHong Zhang           break;
2394fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2395fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2396fa213d2fSHong Zhang           break;
2397fa213d2fSHong Zhang         }
2398fa213d2fSHong Zhang       }
23994e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2400fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2401fa213d2fSHong Zhang         if (ncols == 0) {
2402fa213d2fSHong Zhang           if (cstart) {
2403fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2404fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2405fa213d2fSHong Zhang         } else { /* ncols > 0 */
2406fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2407fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2408fa213d2fSHong Zhang         }
2409fa213d2fSHong Zhang       }
2410fa213d2fSHong Zhang     }
2411fa213d2fSHong Zhang 
2412fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24139371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24149371c9d4SSatish Balay         offdiagA[r]   = *ba;
24159371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24169371c9d4SSatish Balay       }
24179371c9d4SSatish Balay       ba++;
24189371c9d4SSatish Balay       bj++;
2419fa213d2fSHong Zhang     }
2420fa213d2fSHong Zhang   }
2421fa213d2fSHong Zhang 
24229566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24239566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2424fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2425fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
242603bc72f1SMatthew Knepley       a[r] = diagA[r];
2427fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2428fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2429fa213d2fSHong Zhang       a[r] = diagA[r];
2430fa213d2fSHong Zhang       if (idx) {
2431fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
243203bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2433fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2434fa213d2fSHong Zhang       }
243503bc72f1SMatthew Knepley     } else {
243603bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2437fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
243803bc72f1SMatthew Knepley     }
243903bc72f1SMatthew Knepley   }
24409566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24419566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24439566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24449566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24459566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24469566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244803bc72f1SMatthew Knepley }
244903bc72f1SMatthew Knepley 
2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2451d71ae5a4SJacob Faibussowitsch {
2452c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24531a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24541a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2455c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2456c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2457c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2458ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2459ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24601a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24611a254869SHong Zhang   Mat                B = mat->B;
24621a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2463c87e5d42SMatthew Knepley 
2464c87e5d42SMatthew Knepley   PetscFunctionBegin;
24651a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24661a254869SHong Zhang   if (A->cmap->N == n) {
24679566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24689566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24699566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24709566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24719566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24723ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24731a254869SHong Zhang   } else if (n == 0) {
24741a254869SHong Zhang     if (m) {
24759566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24769371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24779371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24789371c9d4SSatish Balay         if (idx) idx[r] = -1;
24799371c9d4SSatish Balay       }
24809566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24811a254869SHong Zhang     }
24823ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24831a254869SHong Zhang   }
24841a254869SHong Zhang 
24859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24869566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24879566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24889566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24891a254869SHong Zhang 
24901a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2492ce496241SStefano Zampini   ba = bav;
24931a254869SHong Zhang   bi = b->i;
24941a254869SHong Zhang   bj = b->j;
24959566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24961a254869SHong Zhang   for (r = 0; r < m; r++) {
24971a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24981a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24999371c9d4SSatish Balay       offdiagA[r]   = *ba;
25009371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
25011a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
25021a254869SHong Zhang       offdiagA[r] = 0.0;
25031a254869SHong Zhang 
25041a254869SHong Zhang       /* Find first hole in the cmap */
25051a254869SHong Zhang       for (j = 0; j < ncols; j++) {
25061a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
25071a254869SHong Zhang         if (col > j && j < cstart) {
25081a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25091a254869SHong Zhang           break;
25101a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25111a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25121a254869SHong Zhang           break;
25131a254869SHong Zhang         }
25141a254869SHong Zhang       }
25154e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25161a254869SHong Zhang         /* a hole is outside compressed Bcols */
25171a254869SHong Zhang         if (ncols == 0) {
25181a254869SHong Zhang           if (cstart) {
25191a254869SHong Zhang             offdiagIdx[r] = 0;
25201a254869SHong Zhang           } else offdiagIdx[r] = cend;
25211a254869SHong Zhang         } else { /* ncols > 0 */
25221a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25231a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25241a254869SHong Zhang         }
25251a254869SHong Zhang       }
25261a254869SHong Zhang     }
25271a254869SHong Zhang 
25281a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25299371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25309371c9d4SSatish Balay         offdiagA[r]   = *ba;
25319371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25329371c9d4SSatish Balay       }
25339371c9d4SSatish Balay       ba++;
25349371c9d4SSatish Balay       bj++;
25351a254869SHong Zhang     }
25361a254869SHong Zhang   }
25371a254869SHong Zhang 
25389566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25399566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25401a254869SHong Zhang   for (r = 0; r < m; ++r) {
25411a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2542c87e5d42SMatthew Knepley       a[r] = diagA[r];
25431a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25441a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25451a254869SHong Zhang       a[r] = diagA[r];
25461a254869SHong Zhang       if (idx) {
25471a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2548c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25491a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25501a254869SHong Zhang       }
2551c87e5d42SMatthew Knepley     } else {
2552c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25531a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2554c87e5d42SMatthew Knepley     }
2555c87e5d42SMatthew Knepley   }
25569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25579566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25599566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25609566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25619566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25629566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2564c87e5d42SMatthew Knepley }
2565c87e5d42SMatthew Knepley 
2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2567d71ae5a4SJacob Faibussowitsch {
2568f6d58c54SBarry Smith   Mat *dummy;
25695494a064SHong Zhang 
25705494a064SHong Zhang   PetscFunctionBegin;
25719566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2572f6d58c54SBarry Smith   *newmat = *dummy;
25739566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25755494a064SHong Zhang }
25765494a064SHong Zhang 
2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2578d71ae5a4SJacob Faibussowitsch {
2579bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2580bbead8a2SBarry Smith 
2581bbead8a2SBarry Smith   PetscFunctionBegin;
25829566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25837b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2585bbead8a2SBarry Smith }
2586bbead8a2SBarry Smith 
2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2588d71ae5a4SJacob Faibussowitsch {
258973a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
259073a71a0fSBarry Smith 
259173a71a0fSBarry Smith   PetscFunctionBegin;
259208401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25939566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2594679944adSJunchao Zhang   if (x->assembled) {
25959566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2596679944adSJunchao Zhang   } else {
25979566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2598679944adSJunchao Zhang   }
25999566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
26009566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
26013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
260273a71a0fSBarry Smith }
2603bbead8a2SBarry Smith 
2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2605d71ae5a4SJacob Faibussowitsch {
2606b1b1104fSBarry Smith   PetscFunctionBegin;
2607b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2608b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2610b1b1104fSBarry Smith }
2611b1b1104fSBarry Smith 
2612b1b1104fSBarry Smith /*@
2613f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2614f2afee66SBarry Smith 
26152ef1f0ffSBarry Smith   Not Collective
2616f2afee66SBarry Smith 
2617f2afee66SBarry Smith   Input Parameter:
2618f2afee66SBarry Smith . A - the matrix
2619f2afee66SBarry Smith 
2620f2afee66SBarry Smith   Output Parameter:
2621f2afee66SBarry Smith . nz - the number of nonzeros
2622f2afee66SBarry Smith 
2623f2afee66SBarry Smith   Level: advanced
2624f2afee66SBarry Smith 
2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2626f2afee66SBarry Smith @*/
2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2628d71ae5a4SJacob Faibussowitsch {
2629f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2630f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2631dfebb78cSStefano Zampini   PetscBool   isaij;
2632f2afee66SBarry Smith 
2633f2afee66SBarry Smith   PetscFunctionBegin;
2634dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2635dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2636f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2638f2afee66SBarry Smith }
2639f2afee66SBarry Smith 
2640f2afee66SBarry Smith /*@
2641b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2642b1b1104fSBarry Smith 
2643c3339decSBarry Smith   Collective
2644b1b1104fSBarry Smith 
2645b1b1104fSBarry Smith   Input Parameters:
2646b1b1104fSBarry Smith + A  - the matrix
264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2648b1b1104fSBarry Smith 
264996a0c994SBarry Smith   Level: advanced
265096a0c994SBarry Smith 
2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2652b1b1104fSBarry Smith @*/
2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2654d71ae5a4SJacob Faibussowitsch {
2655b1b1104fSBarry Smith   PetscFunctionBegin;
2656cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2658b1b1104fSBarry Smith }
2659b1b1104fSBarry Smith 
2660ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject)
2661d71ae5a4SJacob Faibussowitsch {
2662b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2663b1b1104fSBarry Smith 
2664b1b1104fSBarry Smith   PetscFunctionBegin;
2665d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2666b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26679566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26681baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2669d0609cedSBarry Smith   PetscOptionsHeadEnd();
26703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2671b1b1104fSBarry Smith }
2672b1b1104fSBarry Smith 
2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2674d71ae5a4SJacob Faibussowitsch {
26757d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2676c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26777d68702bSBarry Smith 
26787d68702bSBarry Smith   PetscFunctionBegin;
2679c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26809566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26815519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2682b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26839566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2684b83222d8SBarry Smith     aij->nonew = nonew;
26857d68702bSBarry Smith   }
26869566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26887d68702bSBarry Smith }
26897d68702bSBarry Smith 
2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2691d71ae5a4SJacob Faibussowitsch {
26923b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26933b49f96aSBarry Smith 
26943b49f96aSBarry Smith   PetscFunctionBegin;
269508401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26969566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26973b49f96aSBarry Smith   if (d) {
26983b49f96aSBarry Smith     PetscInt rstart;
26999566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
27003b49f96aSBarry Smith     *d += rstart;
27013b49f96aSBarry Smith   }
27023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27033b49f96aSBarry Smith }
27043b49f96aSBarry Smith 
2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2706d71ae5a4SJacob Faibussowitsch {
2707a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2708a8ee9fb5SBarry Smith 
2709a8ee9fb5SBarry Smith   PetscFunctionBegin;
27109566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2712a8ee9fb5SBarry Smith }
27133b49f96aSBarry Smith 
271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2715dec0b466SHong Zhang {
2716dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2717dec0b466SHong Zhang 
2718dec0b466SHong Zhang   PetscFunctionBegin;
271958c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
272058c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2722dec0b466SHong Zhang }
2723dec0b466SHong Zhang 
2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2725cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2726cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2727cda55fadSBarry Smith                                        MatMult_MPIAIJ,
272897304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27297c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27307c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2731f4259b30SLisandro Dalcin                                        NULL,
2732f4259b30SLisandro Dalcin                                        NULL,
2733f4259b30SLisandro Dalcin                                        NULL,
2734f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2735f4259b30SLisandro Dalcin                                        NULL,
2736f4259b30SLisandro Dalcin                                        NULL,
273741f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2738b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
273997304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2740cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2741cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2742cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2743cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
274497304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2745cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2746cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2747cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2748d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2749f4259b30SLisandro Dalcin                                        NULL,
2750f4259b30SLisandro Dalcin                                        NULL,
2751f4259b30SLisandro Dalcin                                        NULL,
2752f4259b30SLisandro Dalcin                                        NULL,
275326cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2754f4259b30SLisandro Dalcin                                        NULL,
2755f4259b30SLisandro Dalcin                                        NULL,
2756a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2757f4259b30SLisandro Dalcin                                        NULL,
2758d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2759f4259b30SLisandro Dalcin                                        NULL,
2760f4259b30SLisandro Dalcin                                        NULL,
2761f4259b30SLisandro Dalcin                                        NULL,
2762f4259b30SLisandro Dalcin                                        NULL,
2763d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27647dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2765cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2766cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2767cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2768d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2769cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27707d68702bSBarry Smith                                        MatShift_MPIAIJ,
277199e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2772564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
277373a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27748a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27758a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2776f4259b30SLisandro Dalcin                                        NULL,
2777f4259b30SLisandro Dalcin                                        NULL,
277893dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2779f4259b30SLisandro Dalcin                                        NULL,
2780cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
278172e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2782f4259b30SLisandro Dalcin                                        NULL,
27837dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2784e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2785e03a110bSBarry Smith                                        MatView_MPIAIJ,
2786f4259b30SLisandro Dalcin                                        NULL,
2787f4259b30SLisandro Dalcin                                        NULL,
2788f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2789f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2790f4259b30SLisandro Dalcin                                        NULL,
2791f4259b30SLisandro Dalcin                                        NULL,
2792f4259b30SLisandro Dalcin                                        NULL,
2793d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2794c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2795f4259b30SLisandro Dalcin                                        NULL,
2796f4259b30SLisandro Dalcin                                        NULL,
2797f4259b30SLisandro Dalcin                                        NULL,
2798f4259b30SLisandro Dalcin                                        NULL,
27993acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2800b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2801f4259b30SLisandro Dalcin                                        NULL,
2802f4259b30SLisandro Dalcin                                        NULL,
2803f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2804f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2805f4259b30SLisandro Dalcin                                        NULL,
2806f4259b30SLisandro Dalcin                                        NULL,
28075bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
28086cff0a6bSPierre Jolivet                                        NULL,
2809f4259b30SLisandro Dalcin                                        NULL,
2810f4259b30SLisandro Dalcin                                        NULL,
2811f4259b30SLisandro Dalcin                                        NULL,
2812f4259b30SLisandro Dalcin                                        NULL,
2813f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2814f4259b30SLisandro Dalcin                                        NULL,
281526be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2816f4259b30SLisandro Dalcin                                        NULL,
2817f4259b30SLisandro Dalcin                                        NULL,
2818cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2819f4259b30SLisandro Dalcin                                        NULL,
2820f4259b30SLisandro Dalcin                                        NULL,
2821f4259b30SLisandro Dalcin                                        NULL,
2822b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28234222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2824f4259b30SLisandro Dalcin                                        NULL,
2825f4259b30SLisandro Dalcin                                        NULL,
28262fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2827f4259b30SLisandro Dalcin                                        NULL,
2828d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
282999cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
283069db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2831f4259b30SLisandro Dalcin                                        NULL,
2832f4259b30SLisandro Dalcin                                        NULL,
2833f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2834f4259b30SLisandro Dalcin                                        NULL,
28355494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2836f4259b30SLisandro Dalcin                                        NULL,
28373b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2838d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2839f4259b30SLisandro Dalcin                                        NULL,
2840c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2841f4259b30SLisandro Dalcin                                        NULL,
2842f4259b30SLisandro Dalcin                                        NULL,
2843b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2844f4259b30SLisandro Dalcin                                        NULL,
2845f4259b30SLisandro Dalcin                                        NULL,
2846f4259b30SLisandro Dalcin                                        NULL,
2847b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2848f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2849a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2850bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2851a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28527dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2853f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2854f4259b30SLisandro Dalcin                                        NULL,
2855f4259b30SLisandro Dalcin                                        NULL,
2856187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2857f4259b30SLisandro Dalcin                                        NULL,
2858f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2859f4259b30SLisandro Dalcin                                        NULL,
2860f4259b30SLisandro Dalcin                                        NULL,
2861f4259b30SLisandro Dalcin                                        NULL,
2862f4259b30SLisandro Dalcin                                        NULL,
286346533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2864f4259b30SLisandro Dalcin                                        NULL,
2865f4259b30SLisandro Dalcin                                        NULL,
28669c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2867a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28684222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2869f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2870f4259b30SLisandro Dalcin                                        NULL,
287172833a62Smarkadams4                                        NULL,
287272833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28732d776b49SBarry Smith                                        NULL,
2874dec0b466SHong Zhang                                        /*150*/ NULL,
2875eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
28764cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIAIJ,
287742ce410bSJunchao Zhang                                        NULL,
287842ce410bSJunchao Zhang                                        NULL,
2879fe1fc275SAlexander                                        /*155*/ NULL,
2880fe1fc275SAlexander                                        MatCopyHashToXAIJ_MPI_Hash};
288136ce4990SBarry Smith 
2882ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2883d71ae5a4SJacob Faibussowitsch {
28842e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28852e8a6d31SBarry Smith 
28862e8a6d31SBarry Smith   PetscFunctionBegin;
28879566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28889566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28902e8a6d31SBarry Smith }
28912e8a6d31SBarry Smith 
2892ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2893d71ae5a4SJacob Faibussowitsch {
28942e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28952e8a6d31SBarry Smith 
28962e8a6d31SBarry Smith   PetscFunctionBegin;
28979566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28989566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29002e8a6d31SBarry Smith }
29018a729477SBarry Smith 
2902d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2903d71ae5a4SJacob Faibussowitsch {
2904ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
29055d2a9ed1SStefano Zampini   PetscMPIInt size;
2906a23d5eceSKris Buschelman 
2907a23d5eceSKris Buschelman   PetscFunctionBegin;
2908ad79cf63SBarry Smith   if (B->hash_active) {
2909aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2910ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2911ad79cf63SBarry Smith   }
29129566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29139566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2914899cda47SBarry Smith 
2915cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2916eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2917cb7b82ddSBarry Smith #else
29189566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2919cb7b82ddSBarry Smith #endif
29209566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29229566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2923cb7b82ddSBarry Smith 
29249566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2925c508b908SBarry Smith 
2926c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29279566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29289566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29299566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29309566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29319566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2932c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2933cb7b82ddSBarry Smith 
2934c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2935ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29369566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29379566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29389566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29399566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2940c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2941899cda47SBarry Smith 
29429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2944526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2945cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
294615001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2948a23d5eceSKris Buschelman }
2949a23d5eceSKris Buschelman 
2950ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2951d71ae5a4SJacob Faibussowitsch {
2952ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
29534c51d546SAlexander   PetscBool   ondiagreset, offdiagreset, memoryreset;
2954846b4da1SFande Kong 
2955846b4da1SFande Kong   PetscFunctionBegin;
2956846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29574c51d546SAlexander   PetscCheck(B->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAssemblyEnd()");
29584c51d546SAlexander   if (B->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS);
29594c51d546SAlexander 
29604c51d546SAlexander   PetscCall(MatResetPreallocation_SeqAIJ_Private(b->A, &ondiagreset));
29614c51d546SAlexander   PetscCall(MatResetPreallocation_SeqAIJ_Private(b->B, &offdiagreset));
29624c51d546SAlexander   memoryreset = (PetscBool)(ondiagreset || offdiagreset);
29634c51d546SAlexander   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &memoryreset, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)B)));
29644c51d546SAlexander   if (!memoryreset) PetscFunctionReturn(PETSC_SUCCESS);
29654c51d546SAlexander 
29669566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29679566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
29684c51d546SAlexander   PetscCheck(B->assembled || B->was_assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Should not need to reset preallocation if the matrix was never assembled");
29694c51d546SAlexander   PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE));
29709566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2971846b4da1SFande Kong 
2972846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2973846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2974846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
2975b3a35320SAlex Lindsay   /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */
2976b3a35320SAlex Lindsay   PetscCall(PetscObjectStateIncrease((PetscObject)B));
29773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2978846b4da1SFande Kong }
2979846b4da1SFande Kong 
2980d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2981d71ae5a4SJacob Faibussowitsch {
2982d6dfbf8fSBarry Smith   Mat         mat;
2983416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2984d6dfbf8fSBarry Smith 
29853a40ed3dSBarry Smith   PetscFunctionBegin;
2986f4259b30SLisandro Dalcin   *newmat = NULL;
29879566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29889566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29899566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29909566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2991273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2992e1b6402fSHong Zhang 
2993d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2994501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2995e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2996d6dfbf8fSBarry Smith 
299717699dbbSLois Curfman McInnes   a->size         = oldmat->size;
299817699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2999e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
3000e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
3001501880eeSStefano Zampini   a->rowindices   = NULL;
3002501880eeSStefano Zampini   a->rowvalues    = NULL;
3003bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
3004d6dfbf8fSBarry Smith 
30059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
30069566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3007420957c1SBarry Smith   if (matin->hash_active) {
3008420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3009420957c1SBarry Smith   } else {
3010420957c1SBarry Smith     mat->preallocated = matin->preallocated;
30112ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
3012aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3013eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
3014b1fc9764SSatish Balay #else
30159566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
30169566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
3017b1fc9764SSatish Balay #endif
3018501880eeSStefano Zampini     } else a->colmap = NULL;
30193f41c07dSBarry Smith     if (oldmat->garray) {
3020b1d57f15SBarry Smith       PetscInt len;
3021d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30229566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30239566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3024501880eeSStefano Zampini     } else a->garray = NULL;
3025d6dfbf8fSBarry Smith 
30260de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30270de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30280de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3029aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3030cff58d65SJunchao Zhang     if (oldmat->Mvctx) {
3031cff58d65SJunchao Zhang       a->Mvctx = oldmat->Mvctx;
3032cff58d65SJunchao Zhang       PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx));
3033cff58d65SJunchao Zhang     }
30349566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30359566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3036420957c1SBarry Smith   }
30379566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30388a729477SBarry Smith   *newmat = mat;
30393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30408a729477SBarry Smith }
3041416022c9SBarry Smith 
3042d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3043d71ae5a4SJacob Faibussowitsch {
304452f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
304552f91c60SVaclav Hapla 
304652f91c60SVaclav Hapla   PetscFunctionBegin;
304752f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
304852f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3049c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30509566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30519566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30529566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
305352f91c60SVaclav Hapla   if (isbinary) {
30549566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
305552f91c60SVaclav Hapla   } else if (ishdf5) {
305652f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30579566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
305852f91c60SVaclav Hapla #else
305952f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
306052f91c60SVaclav Hapla #endif
306152f91c60SVaclav Hapla   } else {
306298921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
306352f91c60SVaclav Hapla   }
30643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
306552f91c60SVaclav Hapla }
306652f91c60SVaclav Hapla 
3067d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3068d71ae5a4SJacob Faibussowitsch {
30693ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30703ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30713ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30728fb81238SShri Abhyankar 
30738fb81238SShri Abhyankar   PetscFunctionBegin;
30749566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30758fb81238SShri Abhyankar 
30763ea6fe3dSLisandro Dalcin   /* read in matrix header */
30779566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
307808401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30799371c9d4SSatish Balay   M  = header[1];
30809371c9d4SSatish Balay   N  = header[2];
30819371c9d4SSatish Balay   nz = header[3];
308208401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
308308401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
308408401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
308508ea439dSMark F. Adams 
30863ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30879566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30883ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30893ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30903ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30919566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30938fb81238SShri Abhyankar 
30943ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30959566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3096aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30978fb81238SShri Abhyankar 
30983ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30999566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
31009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
31019566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
31029371c9d4SSatish Balay   rowidxs[0] = 0;
31039371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
31041690c2aeSBarry Smith   if (nz != PETSC_INT_MAX) {
3105462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
310608401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
310738b83642SBarry Smith   }
310838b83642SBarry Smith 
31093ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
31109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
31119566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
31129566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
31133ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
31149566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
31159566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
31169566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
31173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31188fb81238SShri Abhyankar }
31198fb81238SShri Abhyankar 
31203782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3121ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3122d71ae5a4SJacob Faibussowitsch {
31234aa3045dSJed Brown   IS          iscol_local;
3124c5e4d11fSDmitry Karpeev   PetscBool   isstride;
31259725ddffSPierre Jolivet   PetscMPIInt gisstride = 0;
31263782ecc7SHong Zhang 
31273782ecc7SHong Zhang   PetscFunctionBegin;
31283782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31299566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31303782ecc7SHong Zhang 
3131c5e4d11fSDmitry Karpeev   if (isstride) {
3132c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31339566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31349566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31359566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
31369725ddffSPierre Jolivet     if (mstart == start && mlen - mstart == len) gisstride = 1;
3137c5e4d11fSDmitry Karpeev   }
31383782ecc7SHong Zhang 
31399725ddffSPierre Jolivet   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3140c5e4d11fSDmitry Karpeev   if (gisstride) {
3141c5e4d11fSDmitry Karpeev     PetscInt N;
31429566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31439566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31449566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31459566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3146c5e4d11fSDmitry Karpeev   } else {
3147c5bfad50SMark F. Adams     PetscInt cbs;
31489566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31499566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31509566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3151b79d0421SJed Brown   }
31523782ecc7SHong Zhang 
31533782ecc7SHong Zhang   *isseq = iscol_local;
31543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3155c5e4d11fSDmitry Karpeev }
31568d2139bdSHong Zhang 
3157ddfdf956SHong Zhang /*
31589c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31599c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3160ddfdf956SHong Zhang 
3161ddfdf956SHong Zhang  Input Parameters:
316227430b45SBarry Smith +   mat - matrix
316327430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31649c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
316527430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3166ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
316727430b45SBarry Smith 
316827430b45SBarry Smith  Output Parameters:
316927430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
317027430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
317127430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
317227430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3173ddfdf956SHong Zhang  */
3174835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[])
3175d71ae5a4SJacob Faibussowitsch {
3176040216a4SHong Zhang   Vec             x, cmap;
3177040216a4SHong Zhang   const PetscInt *is_idx;
3178040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31799c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3180040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3181040216a4SHong Zhang   Mat             B    = a->B;
3182040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3183a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31848b3fa1f7SHong Zhang   MPI_Comm        comm;
31853a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31863782ecc7SHong Zhang 
31873782ecc7SHong Zhang   PetscFunctionBegin;
31889566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31899566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31908b3fa1f7SHong Zhang 
3191ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31929566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31939566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31949566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31959566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31960a351717SHong Zhang 
31979c988bcaSHong Zhang   /* Get start indices */
31989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3199ddfdf956SHong Zhang   isstart -= ncols;
32009566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3201040216a4SHong Zhang 
32029566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
32039566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
32049566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
32059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3206ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
32078b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3208ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
32099c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
32108b3fa1f7SHong Zhang   }
32119566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
32129566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
32139566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
32148b3fa1f7SHong Zhang 
32159c988bcaSHong Zhang   /* Get iscol_d */
32169566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
32179566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
32189566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3219feb78a15SHong Zhang 
32209c988bcaSHong Zhang   /* Get isrow_d */
32219566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3222feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32249566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32259c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32269566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3227feb78a15SHong Zhang 
32289566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32299566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32309566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3231feb78a15SHong Zhang 
32329c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32339566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32349566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3235ddfdf956SHong Zhang 
32369566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
323707250d77SHong Zhang 
32389566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32399566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
324064efcef9SHong Zhang 
32419c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3242ddfdf956SHong Zhang   /* off-process column indices */
32439c988bcaSHong Zhang   count = 0;
32449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3246feb78a15SHong Zhang 
32479566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32489566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32498b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3250f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32519c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32521c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32531c645242SHong Zhang       count++;
32548b3fa1f7SHong Zhang     }
32558b3fa1f7SHong Zhang   }
32569566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32579566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
325807250d77SHong Zhang 
32599566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3260b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3261b6d9b4e0SHong Zhang 
32629566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32639c988bcaSHong Zhang   *garray = cmap1;
32649c988bcaSHong Zhang 
32659566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32669566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32679566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3269040216a4SHong Zhang }
3270040216a4SHong Zhang 
3271b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3272d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3273d71ae5a4SJacob Faibussowitsch {
3274b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32751fd43edeSHong Zhang   Mat         M = NULL;
32763b00a383SHong Zhang   MPI_Comm    comm;
3277b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32783b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3279c0c276a7Ssdargavi   PetscInt    n, count, M_size, N_size;
32803b00a383SHong Zhang 
32813b00a383SHong Zhang   PetscFunctionBegin;
32829566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32833b00a383SHong Zhang 
32843b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3285b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32869566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
328728b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32883b00a383SHong Zhang 
32899566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
329028b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32913b00a383SHong Zhang 
32929566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
329328b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32943b00a383SHong Zhang 
3295b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3296b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32979566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32989566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
329948a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
33009566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
33019566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
33023b00a383SHong Zhang 
33033b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
3304c0c276a7Ssdargavi     PetscInt *garray, *garray_compact;
3305b20e2604SHong Zhang     PetscInt  BsubN;
33063b00a383SHong Zhang 
3307b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
33089566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
33093b00a383SHong Zhang 
3310b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
33119566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
33129566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
33133b00a383SHong Zhang 
3314c0c276a7Ssdargavi     // Compact garray so its not of size Bn
3315c0c276a7Ssdargavi     PetscCall(ISGetSize(iscol_o, &count));
3316c0c276a7Ssdargavi     PetscCall(PetscMalloc1(count, &garray_compact));
3317c0c276a7Ssdargavi     PetscCall(PetscArraycpy(garray_compact, garray, count));
3318c0c276a7Ssdargavi 
33199c988bcaSHong Zhang     /* Create submatrix M */
3320c0c276a7Ssdargavi     PetscCall(ISGetSize(isrow, &M_size));
3321c0c276a7Ssdargavi     PetscCall(ISGetSize(iscol, &N_size));
3322c0c276a7Ssdargavi     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M));
33233b00a383SHong Zhang 
3324b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3325b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33267cfce09cSHong Zhang 
33279566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3328b20e2604SHong Zhang     n = asub->B->cmap->N;
3329b20e2604SHong Zhang     if (BsubN > n) {
3330c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33317cfce09cSHong Zhang       const PetscInt *idx;
33329c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33339566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33347cfce09cSHong Zhang 
33359566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33367cfce09cSHong Zhang       j = 0;
33379566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3338b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33397cfce09cSHong Zhang         if (j >= BsubN) break;
33409c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33417cfce09cSHong Zhang 
33429c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33437cfce09cSHong Zhang           idx_new[i] = idx[j++];
334498921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33457cfce09cSHong Zhang       }
33469566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33477cfce09cSHong Zhang 
33489566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33499566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33507cfce09cSHong Zhang 
3351b20e2604SHong Zhang     } else if (BsubN < n) {
335298921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3353b20e2604SHong Zhang     }
33547cfce09cSHong Zhang 
33559566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3356b20e2604SHong Zhang     *submat = M;
33573b00a383SHong Zhang 
3358e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33599566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33609566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33613b00a383SHong Zhang 
33629566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33639566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33643b00a383SHong Zhang 
33659566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33669566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33673b00a383SHong Zhang   }
33683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33693b00a383SHong Zhang }
33703b00a383SHong Zhang 
3371d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3372d71ae5a4SJacob Faibussowitsch {
33731358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33743782ecc7SHong Zhang   PetscInt  csize;
337518e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33764a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33773782ecc7SHong Zhang   MPI_Comm  comm;
33783782ecc7SHong Zhang 
33793782ecc7SHong Zhang   PetscFunctionBegin;
3380bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3381a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33828f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33839566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3384d5761cdaSHong Zhang     if (isrow_d) {
3385d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3386d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3387d5761cdaSHong Zhang     } else {
33889566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3389d5761cdaSHong Zhang       if (iscol_local) {
3390d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3391d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3392d5761cdaSHong Zhang       }
3393d5761cdaSHong Zhang     }
33948f69fa7bSHong Zhang   } else {
3395e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
339618e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33979566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33983782ecc7SHong Zhang     if (!n) {
339918e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
34003782ecc7SHong Zhang     } else {
34019566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
34029566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3403ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
34048f69fa7bSHong Zhang     }
34053782ecc7SHong Zhang 
3406e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
340718e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
34089566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
340918e627e3SHong Zhang     if (!n) {
341018e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
341118e627e3SHong Zhang     } else {
34129566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
34139566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
341418e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
341518e627e3SHong Zhang     }
341618e627e3SHong Zhang 
34179566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3418462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
341918e627e3SHong Zhang     sameRowDist = tsameDist[0];
342018e627e3SHong Zhang   }
342118e627e3SHong Zhang 
342218e627e3SHong Zhang   if (sameRowDist) {
3423b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
34243b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
34259566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34263ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3427b20e2604SHong Zhang     } else { /* sameRowDist */
34283b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34291358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34301358a193SHong Zhang         PetscBool sorted;
34319566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34329566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34339566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
343408401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34351358a193SHong Zhang 
34369566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34371358a193SHong Zhang         if (sorted) {
34381358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34399566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34403ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34413782ecc7SHong Zhang         }
34421358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
344348c0d076SHong Zhang         IS iscol_sub;
34449566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
344548c0d076SHong Zhang         if (iscol_sub) {
34469566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34473ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
344848c0d076SHong Zhang         }
34491358a193SHong Zhang       }
34501358a193SHong Zhang     }
34511358a193SHong Zhang   }
34523782ecc7SHong Zhang 
3453bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34543782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34559566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
345628b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34573782ecc7SHong Zhang   } else {
345848a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34591358a193SHong Zhang   }
34603782ecc7SHong Zhang 
34619566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34629566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34638f69fa7bSHong Zhang 
3464b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34659566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34669566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3467b79d0421SJed Brown   }
34683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34694aa3045dSJed Brown }
34704aa3045dSJed Brown 
3471feb78a15SHong Zhang /*@C
347211a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3473feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3474feb78a15SHong Zhang 
3475d083f849SBarry Smith   Collective
3476feb78a15SHong Zhang 
3477feb78a15SHong Zhang   Input Parameters:
3478feb78a15SHong Zhang + comm   - MPI communicator
3479c0c276a7Ssdargavi . M      - the global row size
3480c0c276a7Ssdargavi . N      - the global column size
3481feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3482c0c276a7Ssdargavi . B      - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray
3483c0c276a7Ssdargavi - garray - either `NULL` or the global index of `B` columns
3484feb78a15SHong Zhang 
3485feb78a15SHong Zhang   Output Parameter:
34862ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
348727430b45SBarry Smith 
3488feb78a15SHong Zhang   Level: advanced
3489feb78a15SHong Zhang 
3490feb78a15SHong Zhang   Notes:
349111a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
349211a5261eSBarry Smith 
3493c0c276a7Ssdargavi   `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore.
3494feb78a15SHong Zhang 
34951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3496feb78a15SHong Zhang @*/
3497c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat)
3498d71ae5a4SJacob Faibussowitsch {
3499c0c276a7Ssdargavi   PetscInt    m, n;
35004ab4d6f4SRichard Tran Mills   MatType     mpi_mat_type;
3501*f18d1d10SJunchao Zhang   Mat_MPIAIJ *mpiaij;
3502*f18d1d10SJunchao Zhang   Mat         C;
3503feb78a15SHong Zhang 
3504feb78a15SHong Zhang   PetscFunctionBegin;
3505*f18d1d10SJunchao Zhang   PetscCall(MatCreate(comm, &C));
35069566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
350708401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
350858b7e2c1SStefano Zampini   PetscCheck(A->rmap->bs == B->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3509feb78a15SHong Zhang 
3510*f18d1d10SJunchao Zhang   PetscCall(MatSetSizes(C, m, n, M, N));
35114ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
35124ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
3513*f18d1d10SJunchao Zhang   PetscCall(MatSetType(C, mpi_mat_type));
35144ab4d6f4SRichard Tran Mills 
3515*f18d1d10SJunchao Zhang   PetscCall(MatSetBlockSizes(C, A->rmap->bs, A->cmap->bs));
3516*f18d1d10SJunchao Zhang   PetscCall(PetscLayoutSetUp(C->rmap));
3517*f18d1d10SJunchao Zhang   PetscCall(PetscLayoutSetUp(C->cmap));
3518feb78a15SHong Zhang 
3519*f18d1d10SJunchao Zhang   mpiaij              = (Mat_MPIAIJ *)C->data;
3520c0c276a7Ssdargavi   mpiaij->A           = A;
3521c0c276a7Ssdargavi   mpiaij->B           = B;
3522c0c276a7Ssdargavi   mpiaij->garray      = garray;
3523*f18d1d10SJunchao Zhang   C->preallocated     = PETSC_TRUE;
3524*f18d1d10SJunchao Zhang   C->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */
3525c0c276a7Ssdargavi 
3526*f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3527*f18d1d10SJunchao Zhang   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3528c0c276a7Ssdargavi   /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and
3529c0c276a7Ssdargavi    also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced
3530c0c276a7Ssdargavi    */
3531*f18d1d10SJunchao Zhang   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3532*f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
3533*f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
3534*f18d1d10SJunchao Zhang   *mat = C;
35353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3536feb78a15SHong Zhang }
3537feb78a15SHong Zhang 
3538ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35394aa3045dSJed Brown 
3540d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3541d71ae5a4SJacob Faibussowitsch {
354298b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
354385f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
354498b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35451fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
354698b658c4SHong Zhang   MatScalar      *aa;
354700e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3548a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
354998b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
355098b658c4SHong Zhang   IS              iscol_sub, iscmap;
355198b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
355218e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3553a31a438cSHong Zhang   MPI_Comm        comm;
35547e2c5f70SBarry Smith 
3555a0ff6018SBarry Smith   PetscFunctionBegin;
35569566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3557d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35589566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
355928b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35609566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3561d5761cdaSHong Zhang 
35629566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
356328b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3564d5761cdaSHong Zhang 
35659566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
356628b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3567d5761cdaSHong Zhang 
35689566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3569d5761cdaSHong Zhang 
3570d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35713b00a383SHong Zhang     PetscBool flg;
35723b00a383SHong Zhang 
35739566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35749566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3575bcae8d28SHong Zhang 
35763b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3577366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35789566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3579366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3580462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3581366a327dSHong Zhang     if (allcolumns) {
3582366a327dSHong Zhang       iscol_sub = iscol_local;
35839566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35849566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3585366a327dSHong Zhang 
35863b00a383SHong Zhang     } else {
35871358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3588244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35899566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
35909566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
35919566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
35928d2139bdSHong Zhang       count = 0;
3593a31a438cSHong Zhang       k     = 0;
3594a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3595a31a438cSHong Zhang         j = is_idx[i];
3596a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3597a31a438cSHong Zhang           /* diagonal part of mat */
35988d2139bdSHong Zhang           idx[count]     = j;
3599366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36004a3daf6eSHong Zhang         } else if (Bn) {
3601a31a438cSHong Zhang           /* off-diagonal part of mat */
3602a31a438cSHong Zhang           if (j == garray[k]) {
36038d2139bdSHong Zhang             idx[count]     = j;
3604a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3605a31a438cSHong Zhang           } else if (j > garray[k]) {
3606a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3607a31a438cSHong Zhang             if (j == garray[k]) {
3608a31a438cSHong Zhang               idx[count]     = j;
3609a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36108d2139bdSHong Zhang             }
36118d2139bdSHong Zhang           }
36128d2139bdSHong Zhang         }
36138d2139bdSHong Zhang       }
36149566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36158d2139bdSHong Zhang 
36169566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36179566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36189566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3619b6d9b4e0SHong Zhang 
36209566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3621a31a438cSHong Zhang     }
36228b3fa1f7SHong Zhang 
36233b00a383SHong Zhang     /* (3) Create sequential Msub */
36249566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3625d5761cdaSHong Zhang   }
36268d2139bdSHong Zhang 
36279566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
362857508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Msub->data;
362998b658c4SHong Zhang   ii  = aij->i;
36309566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3631a0ff6018SBarry Smith 
3632a0ff6018SBarry Smith   /*
3633a0ff6018SBarry Smith       m - number of local rows
3634a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3635a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3636a0ff6018SBarry Smith   */
36379566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
363898b658c4SHong Zhang 
36393b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36403b00a383SHong Zhang     /* (4) Create parallel newmat */
364198b658c4SHong Zhang     PetscMPIInt rank, size;
3642bcae8d28SHong Zhang     PetscInt    csize;
364398b658c4SHong Zhang 
36449566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36459566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
364600e6dbe6SBarry Smith 
3647a0ff6018SBarry Smith     /*
364800e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
364900e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3650a0ff6018SBarry Smith     */
365100e6dbe6SBarry Smith 
365200e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36539566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36546a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36559566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3656a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3657e2c4fddaSBarry Smith         nlocal = m;
36586a6a5d1dSBarry Smith       } else {
3659a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3660ab50ec6bSBarry Smith       }
3661ab50ec6bSBarry Smith     } else {
36626a6a5d1dSBarry Smith       nlocal = csize;
36636a6a5d1dSBarry Smith     }
36649566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
366500e6dbe6SBarry Smith     rstart = rend - nlocal;
3666aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
366700e6dbe6SBarry Smith 
366800e6dbe6SBarry Smith     /* next, compute all the lengths */
366998b658c4SHong Zhang     jj = aij->j;
36709566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
367100e6dbe6SBarry Smith     olens = dlens + m;
367200e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
367300e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
367400e6dbe6SBarry Smith       olen = 0;
367500e6dbe6SBarry Smith       dlen = 0;
367600e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
367715b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
367800e6dbe6SBarry Smith         else dlen++;
367900e6dbe6SBarry Smith         jj++;
368000e6dbe6SBarry Smith       }
368100e6dbe6SBarry Smith       olens[i] = olen;
368200e6dbe6SBarry Smith       dlens[i] = dlen;
368300e6dbe6SBarry Smith     }
3684b6d9b4e0SHong Zhang 
36859566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36869566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
368798b658c4SHong Zhang 
36889566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36899566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
36909566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
36919566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
36929566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
36939566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3694d5761cdaSHong Zhang 
3695d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3696a0ff6018SBarry Smith     M = *newmat;
36979566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
369808401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
36999566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3700c48de900SBarry Smith     /*
3701c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3702c48de900SBarry Smith        rather than the slower MatSetValues().
3703c48de900SBarry Smith     */
3704c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3705c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3706a0ff6018SBarry Smith   }
3707548ecf4dSHong Zhang 
37083b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37109566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
371198b658c4SHong Zhang 
371298b658c4SHong Zhang   jj = aij->j;
37139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3714a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3715a0ff6018SBarry Smith     row = rstart + i;
371600e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
371715b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37189566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37199371c9d4SSatish Balay     jj += nz;
37209371c9d4SSatish Balay     aa += nz;
3721a0ff6018SBarry Smith   }
37229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37239566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3724a0ff6018SBarry Smith 
37259566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3727fee21e36SBarry Smith 
37289566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
372998b658c4SHong Zhang 
373098b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3731fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37323b00a383SHong Zhang     *newmat = M;
3733f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37349566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
373598b658c4SHong Zhang 
3736f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37379566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
373898b658c4SHong Zhang 
3739f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37409566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3741bcae8d28SHong Zhang 
3742bcae8d28SHong Zhang     if (iscol_local) {
3743f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37449566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3745bcae8d28SHong Zhang     }
374698b658c4SHong Zhang   }
37473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3748a0ff6018SBarry Smith }
3749273d9f13SBarry Smith 
3750df40acb1SHong Zhang /*
3751df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3752df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3753df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3754df40acb1SHong Zhang 
375511a5261eSBarry Smith   This requires a sequential iscol with all indices.
3756df40acb1SHong Zhang */
3757d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3758d71ae5a4SJacob Faibussowitsch {
3759df40acb1SHong Zhang   PetscMPIInt rank, size;
3760df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3761df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3762df40acb1SHong Zhang   Mat         M, Mreuse;
376398b658c4SHong Zhang   MatScalar  *aa, *vwork;
3764df40acb1SHong Zhang   MPI_Comm    comm;
3765df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37660b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3767df40acb1SHong Zhang 
3768df40acb1SHong Zhang   PetscFunctionBegin;
37699566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37709566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37719566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3772df40acb1SHong Zhang 
37730b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37749566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37759566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37760b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3777462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37780b27a90eSHong Zhang 
3779df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37809566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
378128b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37829566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3783df40acb1SHong Zhang   } else {
37849566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3785df40acb1SHong Zhang   }
3786df40acb1SHong Zhang 
3787df40acb1SHong Zhang   /*
3788df40acb1SHong Zhang       m - number of local rows
3789df40acb1SHong Zhang       n - number of columns (same on all processors)
3790df40acb1SHong Zhang       rstart - first row in new global matrix generated
3791df40acb1SHong Zhang   */
37929566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
37939566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3794df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
379557508eceSPierre Jolivet     aij = (Mat_SeqAIJ *)Mreuse->data;
3796df40acb1SHong Zhang     ii  = aij->i;
3797df40acb1SHong Zhang     jj  = aij->j;
3798df40acb1SHong Zhang 
3799df40acb1SHong Zhang     /*
3800df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3801df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3802df40acb1SHong Zhang     */
3803df40acb1SHong Zhang 
3804df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3805df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38069566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3807df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3808df40acb1SHong Zhang         nlocal = m;
3809df40acb1SHong Zhang       } else {
3810df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3811df40acb1SHong Zhang       }
3812df40acb1SHong Zhang     } else {
3813df40acb1SHong Zhang       nlocal = csize;
3814df40acb1SHong Zhang     }
38159566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3816df40acb1SHong Zhang     rstart = rend - nlocal;
3817aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3818df40acb1SHong Zhang 
3819df40acb1SHong Zhang     /* next, compute all the lengths */
38209566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3821df40acb1SHong Zhang     olens = dlens + m;
3822df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3823df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3824df40acb1SHong Zhang       olen = 0;
3825df40acb1SHong Zhang       dlen = 0;
3826df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3827df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3828df40acb1SHong Zhang         else dlen++;
3829df40acb1SHong Zhang         jj++;
3830df40acb1SHong Zhang       }
3831df40acb1SHong Zhang       olens[i] = olen;
3832df40acb1SHong Zhang       dlens[i] = dlen;
3833df40acb1SHong Zhang     }
38349566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38359566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38369566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38379566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38389566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38399566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3840df40acb1SHong Zhang   } else {
3841df40acb1SHong Zhang     PetscInt ml, nl;
3842df40acb1SHong Zhang 
3843df40acb1SHong Zhang     M = *newmat;
38449566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
384508401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38469566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3847df40acb1SHong Zhang     /*
3848df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3849df40acb1SHong Zhang        rather than the slower MatSetValues().
3850df40acb1SHong Zhang     */
3851df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3852df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3853df40acb1SHong Zhang   }
38549566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
385557508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Mreuse->data;
3856df40acb1SHong Zhang   ii  = aij->i;
3857df40acb1SHong Zhang   jj  = aij->j;
38582e5835c6SStefano Zampini 
38592e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38609566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3861df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3862df40acb1SHong Zhang     row   = rstart + i;
3863df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38649371c9d4SSatish Balay     cwork = jj;
38658e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38669371c9d4SSatish Balay     vwork = aa;
38678e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38689566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3869df40acb1SHong Zhang   }
38709566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3871df40acb1SHong Zhang 
38729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3874df40acb1SHong Zhang   *newmat = M;
3875df40acb1SHong Zhang 
3876df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3877df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38789566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38799566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3880df40acb1SHong Zhang   }
38813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3882df40acb1SHong Zhang }
3883df40acb1SHong Zhang 
3884ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3885d71ae5a4SJacob Faibussowitsch {
38866a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
38879f0612e4SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart;
3888ccd8e176SBarry Smith   const PetscInt *JJ;
3889eeb24464SBarry Smith   PetscBool       nooffprocentries;
38906a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3891ccd8e176SBarry Smith 
3892ccd8e176SBarry Smith   PetscFunctionBegin;
38939566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
38949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3895d0f46423SBarry Smith   m       = B->rmap->n;
3896d0f46423SBarry Smith   cstart  = B->cmap->rstart;
3897d0f46423SBarry Smith   cend    = B->cmap->rend;
3898d0f46423SBarry Smith   rstart  = B->rmap->rstart;
38999f0612e4SBarry Smith   irstart = Ii[0];
3900899cda47SBarry Smith 
39019566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3902ccd8e176SBarry Smith 
390376bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39048f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3905ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39069f0612e4SBarry Smith       JJ  = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
390708401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
390808401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
390908401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3910ecc77c7aSBarry Smith     }
391176bd3646SJed Brown   }
3912ecc77c7aSBarry Smith 
39138f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3914b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39159f0612e4SBarry Smith     JJ      = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
3916ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3917ccd8e176SBarry Smith     d       = 0;
39180daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39190daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3920ccd8e176SBarry Smith     }
3921ccd8e176SBarry Smith     d_nnz[i] = d;
3922ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3923ccd8e176SBarry Smith   }
39249566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39259566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3926ccd8e176SBarry Smith 
39278f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3928ccd8e176SBarry Smith     ii = i + rstart;
39299f0612e4SBarry Smith     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES));
3930ccd8e176SBarry Smith   }
3931eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3932eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3935eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3936ccd8e176SBarry Smith 
39376a3d2595SBarry Smith   /* count number of entries below block diagonal */
39386a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39396a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39406a3d2595SBarry Smith   Aij->ld = ld;
39416a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39426a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39436a3d2595SBarry Smith     j   = 0;
3944ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39456a3d2595SBarry Smith     ld[i] = j;
3946720a2405SPierre Jolivet     if (J) J += nnz;
39476a3d2595SBarry Smith   }
39486a3d2595SBarry Smith 
39499566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3951ccd8e176SBarry Smith }
3952ccd8e176SBarry Smith 
39531eea217eSSatish Balay /*@
395411a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3955ccd8e176SBarry Smith   (the default parallel PETSc format).
3956ccd8e176SBarry Smith 
3957d083f849SBarry Smith   Collective
3958ccd8e176SBarry Smith 
3959ccd8e176SBarry Smith   Input Parameters:
3960a1661176SMatthew Knepley + B - the matrix
3961d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
3962d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
3963ccd8e176SBarry Smith - v - optional values in the matrix
3964ccd8e176SBarry Smith 
3965ccd8e176SBarry Smith   Level: developer
3966ccd8e176SBarry Smith 
396712251496SSatish Balay   Notes:
39682ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39692ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
397011a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
397112251496SSatish Balay 
39722ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
397312251496SSatish Balay 
3974a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3975a4bd8bc0SBarry Smith 
3976a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3977a4bd8bc0SBarry Smith 
3978a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3979a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3980a4bd8bc0SBarry Smith 
398112251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
398212251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3983c5e4d11fSDmitry Karpeev   as shown
398427430b45SBarry Smith .vb
398527430b45SBarry Smith         1 0 0
398627430b45SBarry Smith         2 0 3     P0
398727430b45SBarry Smith        -------
398827430b45SBarry Smith         4 5 6     P1
398927430b45SBarry Smith 
399027430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
399127430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
399227430b45SBarry Smith         j =  {0,0,2}  [size = 3]
399327430b45SBarry Smith         v =  {1,2,3}  [size = 3]
399427430b45SBarry Smith 
399527430b45SBarry Smith      Process1 [P1] rows_owned=[2]
399627430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
399727430b45SBarry Smith         j =  {0,1,2}  [size = 3]
399827430b45SBarry Smith         v =  {4,5,6}  [size = 3]
399927430b45SBarry Smith .ve
400012251496SSatish Balay 
4001fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4002a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4003ccd8e176SBarry Smith @*/
4004d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4005d71ae5a4SJacob Faibussowitsch {
4006ccd8e176SBarry Smith   PetscFunctionBegin;
4007cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4009ccd8e176SBarry Smith }
4010ccd8e176SBarry Smith 
40115d83a8b1SBarry Smith /*@
401211a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4013273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4014273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
401520f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4016273d9f13SBarry Smith 
4017d083f849SBarry Smith   Collective
4018273d9f13SBarry Smith 
4019273d9f13SBarry Smith   Input Parameters:
40201c4f3114SJed Brown + B     - the matrix
4021273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4022273d9f13SBarry Smith            (same value is used for all local rows)
4023273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4024273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40252ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4026273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40273287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40283287b5eaSJed Brown            the diagonal entry even if it is zero.
4029273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4030273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4031273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4032273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40332ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4034273d9f13SBarry Smith            structure. The size of this array is equal to the number
4035273d9f13SBarry Smith            of local rows, i.e 'm'.
4036273d9f13SBarry Smith 
40372920cce0SJacob Faibussowitsch   Example Usage:
403827430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
403927430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
404027430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
404127430b45SBarry Smith   as follows
404227430b45SBarry Smith 
404327430b45SBarry Smith .vb
404427430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
404527430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
404627430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
404727430b45SBarry Smith     -------------------------------------
404827430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
404927430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
405027430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
405127430b45SBarry Smith     -------------------------------------
405227430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
405327430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
405427430b45SBarry Smith .ve
405527430b45SBarry Smith 
405627430b45SBarry Smith   This can be represented as a collection of submatrices as
405727430b45SBarry Smith .vb
405827430b45SBarry Smith       A B C
405927430b45SBarry Smith       D E F
406027430b45SBarry Smith       G H I
406127430b45SBarry Smith .ve
406227430b45SBarry Smith 
406327430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
406427430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
406527430b45SBarry Smith 
406627430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
406727430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
406827430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
406927430b45SBarry Smith 
407027430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
407127430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
407227430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
407327430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
407427430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
40755163b989SNuno Nobre   matrix, and [DF] as another `MATSEQAIJ` matrix.
407627430b45SBarry Smith 
407720f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
40785163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
40795163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
40805163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
40815163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
408220f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
408327430b45SBarry Smith .vb
408427430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
408527430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
408627430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
408727430b45SBarry Smith .ve
408820f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
408927430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
409027430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
409127430b45SBarry Smith   34 values.
409227430b45SBarry Smith 
409320f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
409427430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
409520f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
409627430b45SBarry Smith .vb
409727430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
409827430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
409927430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
410027430b45SBarry Smith .ve
410127430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
410227430b45SBarry Smith   hence pre-allocation is perfect.
410327430b45SBarry Smith 
410427430b45SBarry Smith   Level: intermediate
410527430b45SBarry Smith 
410627430b45SBarry Smith   Notes:
410749a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
410849a6f317SBarry Smith 
410927430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41100598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4111651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4112273d9f13SBarry Smith 
4113273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4114273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4115273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4116273d9f13SBarry Smith 
4117273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4118a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4119a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4120a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4121a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4122a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4123a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4124a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4125a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4126273d9f13SBarry Smith 
41272ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4128273d9f13SBarry Smith 
412927430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4130aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
413127430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4132aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4133aa95bbe8SBarry Smith 
41341cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4135a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4136273d9f13SBarry Smith @*/
4137d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4138d71ae5a4SJacob Faibussowitsch {
4139273d9f13SBarry Smith   PetscFunctionBegin;
41406ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41416ba663aaSJed Brown   PetscValidType(B, 1);
4142cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4144273d9f13SBarry Smith }
4145273d9f13SBarry Smith 
414658d36128SBarry Smith /*@
414711a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41488f8f2f0dSBarry Smith   CSR format for the local rows.
41492fb0ec9aSBarry Smith 
4150d083f849SBarry Smith   Collective
41512fb0ec9aSBarry Smith 
41522fb0ec9aSBarry Smith   Input Parameters:
41532fb0ec9aSBarry Smith + comm - MPI communicator
415411a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41552fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4156d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4157d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4158d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4159d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41605693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41615693b835SJunchao Zhang . j    - global column indices
4162f1f2ae84SBarry Smith - a    - optional matrix values
41632fb0ec9aSBarry Smith 
41642fb0ec9aSBarry Smith   Output Parameter:
41652fb0ec9aSBarry Smith . mat - the matrix
416603bfb495SBarry Smith 
41672fb0ec9aSBarry Smith   Level: intermediate
41682fb0ec9aSBarry Smith 
41692fb0ec9aSBarry Smith   Notes:
41702ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
4171d4c8cc39SPierre Jolivet   thus you CANNOT change the matrix entries by changing the values of `a[]` after you have
4172d4c8cc39SPierre Jolivet   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41732fb0ec9aSBarry Smith 
41742ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
417512251496SSatish Balay 
41765693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4177a4bd8bc0SBarry Smith 
41785693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4179a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4180a4bd8bc0SBarry Smith 
418112251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
4182d4c8cc39SPierre Jolivet   row-major ordering, i.e., for the following matrix, the input data expected is
4183c5e4d11fSDmitry Karpeev   as shown
41842ef1f0ffSBarry Smith .vb
41852ef1f0ffSBarry Smith         1 0 0
41862ef1f0ffSBarry Smith         2 0 3     P0
41872ef1f0ffSBarry Smith        -------
41882ef1f0ffSBarry Smith         4 5 6     P1
41898f8f2f0dSBarry Smith 
41902ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
41912ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
41922ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
41932ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
41942fb0ec9aSBarry Smith 
41952ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
41962ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
41972ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
41982ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
41992ef1f0ffSBarry Smith .ve
42002ef1f0ffSBarry Smith 
4201d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
42025693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42032fb0ec9aSBarry Smith @*/
4204d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4205d71ae5a4SJacob Faibussowitsch {
42062fb0ec9aSBarry Smith   PetscFunctionBegin;
420708401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
420808401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42099566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42109566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42119566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42129566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42139566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42152fb0ec9aSBarry Smith }
42162fb0ec9aSBarry Smith 
42178f8f2f0dSBarry Smith /*@
421811a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42192ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42202ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42216a3d2595SBarry Smith 
42226a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42238f8f2f0dSBarry Smith 
42248f8f2f0dSBarry Smith   Collective
42258f8f2f0dSBarry Smith 
42268f8f2f0dSBarry Smith   Input Parameters:
42278f8f2f0dSBarry Smith + mat - the matrix
422811a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42298f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
423011a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42318f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
423211a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
423311a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42348f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42358f8f2f0dSBarry Smith . J   - column indices
42368f8f2f0dSBarry Smith - v   - matrix values
42378f8f2f0dSBarry Smith 
42382ef1f0ffSBarry Smith   Level: deprecated
42398f8f2f0dSBarry Smith 
42401cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4241a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42428f8f2f0dSBarry Smith @*/
4243d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4244d71ae5a4SJacob Faibussowitsch {
42456a3d2595SBarry Smith   PetscInt        nnz, i;
42468f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42478f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4248fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4249fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42508f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42516a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42526a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42538f8f2f0dSBarry Smith 
42548f8f2f0dSBarry Smith   PetscFunctionBegin;
4255aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
425608401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
425708401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
425808401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42598f8f2f0dSBarry Smith 
42609566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42619566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42628f8f2f0dSBarry Smith 
42638f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42644c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42654c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42664c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42674c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42684c17f1ccSBarry Smith       }
42694c17f1ccSBarry Smith     }
42708f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42718f8f2f0dSBarry Smith     Iii = Ii[i];
42728f8f2f0dSBarry Smith     ldi = ld[i];
42738f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42749566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42759566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42769566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42778f8f2f0dSBarry Smith     ad += md;
42788f8f2f0dSBarry Smith     ao += nnz - md;
42798f8f2f0dSBarry Smith   }
42808f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42818f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42829566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42839566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42849566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42859566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42869566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42879566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
42898f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
42903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42918f8f2f0dSBarry Smith }
42928f8f2f0dSBarry Smith 
42936a3d2595SBarry Smith /*@
429411a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
42956a3d2595SBarry Smith 
42966a3d2595SBarry Smith   Collective
42976a3d2595SBarry Smith 
42986a3d2595SBarry Smith   Input Parameters:
42996a3d2595SBarry Smith + mat - the matrix
43006a3d2595SBarry Smith - v   - matrix values, stored by row
43016a3d2595SBarry Smith 
43026a3d2595SBarry Smith   Level: intermediate
43036a3d2595SBarry Smith 
4304a4bd8bc0SBarry Smith   Notes:
43056a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43066a3d2595SBarry Smith 
4307a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4308a4bd8bc0SBarry Smith 
43091cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4310a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43116a3d2595SBarry Smith @*/
4312d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4313d71ae5a4SJacob Faibussowitsch {
43146a3d2595SBarry Smith   PetscInt        nnz, i, m;
43156a3d2595SBarry Smith   PetscBool       nooffprocentries;
43166a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43176a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43186a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43196a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43206a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43216a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43226a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43236a3d2595SBarry Smith 
43246a3d2595SBarry Smith   PetscFunctionBegin;
43256a3d2595SBarry Smith   m = mat->rmap->n;
43266a3d2595SBarry Smith 
43276a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43286a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43296a3d2595SBarry Smith   Iii = 0;
43306a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43316a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43326a3d2595SBarry Smith     ldi = ld[i];
43336a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43346a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43356a3d2595SBarry Smith     ad += md;
4336810441c8SPierre Jolivet     if (ao) {
4337810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4338810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43396a3d2595SBarry Smith       ao += nnz - md;
4340810441c8SPierre Jolivet     }
43416a3d2595SBarry Smith     Iii += nnz;
43426a3d2595SBarry Smith   }
43436a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43446a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43456a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43466a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43476a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43486a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43496a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43506a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43516a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43526a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43546a3d2595SBarry Smith }
43556a3d2595SBarry Smith 
43565d83a8b1SBarry Smith /*@
435711a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4358273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4359273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43602ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4361273d9f13SBarry Smith 
4362d083f849SBarry Smith   Collective
4363273d9f13SBarry Smith 
4364273d9f13SBarry Smith   Input Parameters:
4365273d9f13SBarry Smith + comm  - MPI communicator
436611a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4367273d9f13SBarry Smith           This value should be the same as the local size used in creating the
4368273d9f13SBarry Smith           y vector for the matrix-vector product y = Ax.
4369273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
437045f401ebSJose E. Roman           x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4371273d9f13SBarry Smith           calculated if N is given) For square matrices n is almost always m.
437211a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
437311a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4374273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4375273d9f13SBarry Smith           (same value is used for all local rows)
4376273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4377273d9f13SBarry Smith           DIAGONAL portion of the local submatrix (possibly different for each row)
43782ef1f0ffSBarry Smith           or `NULL`, if `d_nz` is used to specify the nonzero structure.
4379273d9f13SBarry Smith           The size of this array is equal to the number of local rows, i.e 'm'.
4380273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4381273d9f13SBarry Smith           submatrix (same value is used for all local rows).
4382273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4383273d9f13SBarry Smith           OFF-DIAGONAL portion of the local submatrix (possibly different for
43842ef1f0ffSBarry Smith           each row) or `NULL`, if `o_nz` is used to specify the nonzero
4385273d9f13SBarry Smith           structure. The size of this array is equal to the number
4386273d9f13SBarry Smith           of local rows, i.e 'm'.
4387273d9f13SBarry Smith 
4388273d9f13SBarry Smith   Output Parameter:
4389273d9f13SBarry Smith . A - the matrix
4390273d9f13SBarry Smith 
439127430b45SBarry Smith   Options Database Keys:
439227430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
439327430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
439427430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
4395727bdf9bSBarry Smith                                       See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter`
4396727bdf9bSBarry Smith                                       to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
439727430b45SBarry Smith 
43982ef1f0ffSBarry Smith   Level: intermediate
43992ef1f0ffSBarry Smith 
440027430b45SBarry Smith   Notes:
440177433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4402f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
440311a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4404175b88e8SBarry Smith 
440549a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
440649a6f317SBarry Smith 
44072ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44082ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4409273d9f13SBarry Smith   storage requirements for this matrix.
4410273d9f13SBarry Smith 
441111a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4412273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4413273d9f13SBarry Smith   that argument.
4414273d9f13SBarry Smith 
4415727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
4416727bdf9bSBarry Smith   `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
4417727bdf9bSBarry Smith 
4418273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4419273d9f13SBarry Smith   (possibly both).
4420273d9f13SBarry Smith 
442133a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
4422727bdf9bSBarry Smith   first `m0` rows belong to process 0, the next `m1` rows belong to
4423727bdf9bSBarry Smith   process 1, the next `m2` rows belong to process 2, etc., where
4424727bdf9bSBarry Smith   `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores
442533a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4426273d9f13SBarry Smith 
442733a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
442833a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4429df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
443033a7c187SSatish Balay 
443133a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
443233a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
443333a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
443433a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
443533a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
443633a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
44370b4b7b1cSBarry Smith   illustrates this concept. The two matrices, the DIAGONAL portion and
44380b4b7b1cSBarry Smith   the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices.
443933a7c187SSatish Balay 
444033a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
444133a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
444233a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
444333a7c187SSatish Balay   local matrix (a rectangular submatrix).
4444273d9f13SBarry Smith 
44452ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4446273d9f13SBarry Smith 
444797d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44482ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4449da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4450da57b5cdSKarl Rupp .vb
44512ef1f0ffSBarry Smith   MatCreate(..., &A);
44522ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44532ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44542ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4455da57b5cdSKarl Rupp .ve
445697d05335SKris Buschelman 
4457273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4458273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4459273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4460273d9f13SBarry Smith 
44612920cce0SJacob Faibussowitsch   Example Usage:
4462273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4463273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4464273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4465efc377ccSKarl Rupp   as follows
4466273d9f13SBarry Smith 
4467273d9f13SBarry Smith .vb
4468273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4469273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4470273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4471273d9f13SBarry Smith     -------------------------------------
4472273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4473273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4474273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4475273d9f13SBarry Smith     -------------------------------------
4476273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4477273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4478273d9f13SBarry Smith .ve
4479273d9f13SBarry Smith 
4480da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4481273d9f13SBarry Smith 
4482273d9f13SBarry Smith .vb
4483273d9f13SBarry Smith       A B C
4484273d9f13SBarry Smith       D E F
4485273d9f13SBarry Smith       G H I
4486273d9f13SBarry Smith .ve
4487273d9f13SBarry Smith 
4488273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4489273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4490273d9f13SBarry Smith 
4491273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4492273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4493273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4494273d9f13SBarry Smith 
4495273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4496273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4497273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4498273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
449927430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
45005163b989SNuno Nobre   matrix, and [DF] as another SeqAIJ matrix.
4501273d9f13SBarry Smith 
45022ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45035163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
45045163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
45055163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
45065163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45072ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4508273d9f13SBarry Smith .vb
450927430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
451027430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
451127430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4512273d9f13SBarry Smith .ve
45132ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4514273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4515273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4516273d9f13SBarry Smith   34 values.
4517273d9f13SBarry Smith 
45182ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4519a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4520da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4521273d9f13SBarry Smith .vb
452227430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
452327430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
452427430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4525273d9f13SBarry Smith .ve
4526273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4527273d9f13SBarry Smith   hence pre-allocation is perfect.
4528273d9f13SBarry Smith 
45291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4530727bdf9bSBarry Smith           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`,
4531727bdf9bSBarry Smith           `MatGetOwnershipRangesColumn()`, `PetscLayout`
4532273d9f13SBarry Smith @*/
4533d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4534d71ae5a4SJacob Faibussowitsch {
4535b1d57f15SBarry Smith   PetscMPIInt size;
4536273d9f13SBarry Smith 
4537273d9f13SBarry Smith   PetscFunctionBegin;
45389566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45399566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45409566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4541273d9f13SBarry Smith   if (size > 1) {
45429566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45439566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4544273d9f13SBarry Smith   } else {
45459566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45469566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4547273d9f13SBarry Smith   }
45483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4549273d9f13SBarry Smith }
4550195d93cdSBarry Smith 
4551127ca0efSMatthew Knepley /*@C
45520ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4553127ca0efSMatthew Knepley 
45542ef1f0ffSBarry Smith   Not Collective
4555127ca0efSMatthew Knepley 
4556127ca0efSMatthew Knepley   Input Parameter:
455711a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4558127ca0efSMatthew Knepley 
4559127ca0efSMatthew Knepley   Output Parameters:
456011a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
456111a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
45622ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4563127ca0efSMatthew Knepley 
45640ab4885dSBarry Smith   Level: intermediate
45650ab4885dSBarry Smith 
456611a5261eSBarry Smith   Note:
45672ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
45682ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
45692ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4570127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4571127ca0efSMatthew Knepley 
4572ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4573127ca0efSMatthew Knepley @*/
4574d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4575d71ae5a4SJacob Faibussowitsch {
4576195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
457704cf37c7SBarry Smith   PetscBool   flg;
4578b1d57f15SBarry Smith 
4579195d93cdSBarry Smith   PetscFunctionBegin;
45809566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
458128b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
458221e72a00SBarry Smith   if (Ad) *Ad = a->A;
458321e72a00SBarry Smith   if (Ao) *Ao = a->B;
458421e72a00SBarry Smith   if (colmap) *colmap = a->garray;
45853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4586195d93cdSBarry Smith }
4587a2243be0SBarry Smith 
4588d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4589d71ae5a4SJacob Faibussowitsch {
4590110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
45919b8102ccSHong Zhang   PetscInt    *indx;
4592110bb6e1SHong Zhang   PetscScalar *values;
4593421ddf4dSJunchao Zhang   MatType      rootType;
45949b8102ccSHong Zhang 
45959b8102ccSHong Zhang   PetscFunctionBegin;
45969566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4597110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4598110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4599110bb6e1SHong Zhang 
460048a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4601a22543b6SHong Zhang     /* Check sum(n) = N */
4602462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
460308401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4604a22543b6SHong Zhang 
46059566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46069b8102ccSHong Zhang     rstart -= m;
46079b8102ccSHong Zhang 
4608d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46099b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46109566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46119566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46129566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46139b8102ccSHong Zhang     }
46149b8102ccSHong Zhang 
46159566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46169566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46179566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46189566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46199566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46209566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46219566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46229566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4623d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46249566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46259b8102ccSHong Zhang   }
46269b8102ccSHong Zhang 
4627110bb6e1SHong Zhang   /* numeric phase */
46289566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46299b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46309566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46319b8102ccSHong Zhang     Ii = i + rstart;
46329566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46339566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46349b8102ccSHong Zhang   }
46359566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4638c5d6d63eSBarry Smith }
4639c5d6d63eSBarry Smith 
464049abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data)
4641d71ae5a4SJacob Faibussowitsch {
464249abdd8aSBarry Smith   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data;
464351a7d1a8SHong Zhang 
464451a7d1a8SHong Zhang   PetscFunctionBegin;
46453ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
46469566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
46479566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
46489566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
46499566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
46509566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
46519566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
46529566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
46539566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
46549566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
46559566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
46569566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
46579566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
46589566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
46599566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
46603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
466151a7d1a8SHong Zhang }
466251a7d1a8SHong Zhang 
4663c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4664c6db04a5SJed Brown #include <petscbt.h>
46654ebed01fSBarry Smith 
4666d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4667d71ae5a4SJacob Faibussowitsch {
4668ce94432eSBarry Smith   MPI_Comm             comm;
466955d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4670b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
46716497c311SBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m;
46726497c311SBarry Smith   PetscMPIInt          proc, k;
4673b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
46746497c311SBarry Smith   PetscInt             anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4675b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
467655d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
467755d1abb9SHong Zhang   MPI_Status          *status;
4678fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4679dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
468055d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4681776b82aeSLisandro Dalcin   PetscContainer       container;
468255d1abb9SHong Zhang 
468355d1abb9SHong Zhang   PetscFunctionBegin;
46849566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
46859566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
46863c2c1871SHong Zhang 
46879566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
46889566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
468955d1abb9SHong Zhang 
46909566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
469128b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
46929566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
46939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4694fff043a9SJunchao Zhang   aa = a_a;
4695bf0cc555SLisandro Dalcin 
469655d1abb9SHong Zhang   bi     = merge->bi;
469755d1abb9SHong Zhang   bj     = merge->bj;
469855d1abb9SHong Zhang   buf_ri = merge->buf_ri;
469955d1abb9SHong Zhang   buf_rj = merge->buf_rj;
470055d1abb9SHong Zhang 
47019566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47027a2fc3feSBarry Smith   owners = merge->rowmap->range;
470355d1abb9SHong Zhang   len_s  = merge->len_s;
470455d1abb9SHong Zhang 
470555d1abb9SHong Zhang   /* send and recv matrix values */
47069566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47079566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
470855d1abb9SHong Zhang 
47099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
471055d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
471155d1abb9SHong Zhang     if (!len_s[proc]) continue;
471255d1abb9SHong Zhang     i = owners[proc];
47136497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
471455d1abb9SHong Zhang     k++;
471555d1abb9SHong Zhang   }
471655d1abb9SHong Zhang 
47179566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47189566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47199566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
472055d1abb9SHong Zhang 
47219566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47229566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
472355d1abb9SHong Zhang 
472455d1abb9SHong Zhang   /* insert mat values of mpimat */
47259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
472755d1abb9SHong Zhang 
472855d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
472955d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4730f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
473155d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4732a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
473355d1abb9SHong Zhang   }
473455d1abb9SHong Zhang 
473555d1abb9SHong Zhang   /* set values of ba */
47367a2fc3feSBarry Smith   m = merge->rowmap->n;
473755d1abb9SHong Zhang   for (i = 0; i < m; i++) {
473855d1abb9SHong Zhang     arow = owners[rank] + i;
473955d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
474055d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47419566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
474255d1abb9SHong Zhang 
474355d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
474455d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
474555d1abb9SHong Zhang     aj     = a->j + ai[arow];
4746fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
474755d1abb9SHong Zhang     nextaj = 0;
474855d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
474955d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
475055d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
475155d1abb9SHong Zhang       }
475255d1abb9SHong Zhang     }
475355d1abb9SHong Zhang 
475455d1abb9SHong Zhang     /* add received vals into ba */
475555d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
475655d1abb9SHong Zhang       /* i-th row */
475755d1abb9SHong Zhang       if (i == *nextrow[k]) {
475855d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4759f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4760f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
476155d1abb9SHong Zhang         nextaj = 0;
476255d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
476355d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
476455d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
476555d1abb9SHong Zhang           }
476655d1abb9SHong Zhang         }
47679371c9d4SSatish Balay         nextrow[k]++;
47689371c9d4SSatish Balay         nextai[k]++;
476955d1abb9SHong Zhang       }
477055d1abb9SHong Zhang     }
47719566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
477255d1abb9SHong Zhang   }
47739566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
47749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
47759566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
477655d1abb9SHong Zhang 
47779566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
47789566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
47799566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
47809566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
47819566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
47823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
478355d1abb9SHong Zhang }
478438f152feSBarry Smith 
4785d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4786d71ae5a4SJacob Faibussowitsch {
478755a3bba9SHong Zhang   Mat                  B_mpi;
4788c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4789b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4790b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4791d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
47926497c311SBarry Smith   PetscInt             len, *dnz, *onz, bs, cbs;
4793c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4794b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
479555d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
479658cb9c82SHong Zhang   MPI_Status          *status;
47970298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4798be0fcf8dSHong Zhang   PetscBT              lnkbt;
479951a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4800776b82aeSLisandro Dalcin   PetscContainer       container;
480102c68681SHong Zhang 
4802e5f2cdd8SHong Zhang   PetscFunctionBegin;
48039566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48043c2c1871SHong Zhang 
480538f152feSBarry Smith   /* make sure it is a PETSc comm */
48069566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48079566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48089566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
480955d1abb9SHong Zhang 
48109566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4812e5f2cdd8SHong Zhang 
48136abd8857SHong Zhang   /* determine row ownership */
48149566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48159566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48169566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48179566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48189566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
482155d1abb9SHong Zhang 
48227a2fc3feSBarry Smith   m      = merge->rowmap->n;
48237a2fc3feSBarry Smith   owners = merge->rowmap->range;
48246abd8857SHong Zhang 
48256abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48263e06a4e6SHong Zhang   len_s = merge->len_s;
482751a7d1a8SHong Zhang 
48282257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4829c2234fe3SHong Zhang   merge->nsend = 0;
48306497c311SBarry Smith   for (PetscMPIInt proc = 0; proc < size; proc++) {
48312257cef7SHong Zhang     len_si[proc] = 0;
48323e06a4e6SHong Zhang     if (proc == rank) {
48336abd8857SHong Zhang       len_s[proc] = 0;
48343e06a4e6SHong Zhang     } else {
48356497c311SBarry Smith       PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc]));
48366497c311SBarry Smith       PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */
48373e06a4e6SHong Zhang     }
48383e06a4e6SHong Zhang     if (len_s[proc]) {
4839c2234fe3SHong Zhang       merge->nsend++;
48402257cef7SHong Zhang       nrows = 0;
48412257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48422257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48432257cef7SHong Zhang       }
48446497c311SBarry Smith       PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc]));
48452257cef7SHong Zhang       len += len_si[proc];
4846409913e3SHong Zhang     }
484758cb9c82SHong Zhang   }
4848409913e3SHong Zhang 
48492257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
48509566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
48519566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4852671beff6SHong Zhang 
48533e06a4e6SHong Zhang   /* post the Irecv of j-structure */
48549566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
48559566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
485602c68681SHong Zhang 
48573e06a4e6SHong Zhang   /* post the Isend of j-structure */
48589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
48593e06a4e6SHong Zhang 
48606497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
4861409913e3SHong Zhang     if (!len_s[proc]) continue;
486202c68681SHong Zhang     i = owners[proc];
48636497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
486451a7d1a8SHong Zhang     k++;
486551a7d1a8SHong Zhang   }
486651a7d1a8SHong Zhang 
48673e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
48689566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
48699566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
487002c68681SHong Zhang 
487102c68681SHong Zhang   /* send and recv i-structure */
48729566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
48739566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
487402c68681SHong Zhang 
48759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
48763e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
48776497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
487802c68681SHong Zhang     if (!len_s[proc]) continue;
48793e06a4e6SHong Zhang     /* form outgoing message for i-structure:
48803e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
48813e06a4e6SHong Zhang                [1:nrows]:           row index (global)
48823e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
48833e06a4e6SHong Zhang     */
48842257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
48853e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
48863e06a4e6SHong Zhang     buf_si[0]   = nrows;
48873e06a4e6SHong Zhang     buf_si_i[0] = 0;
48883e06a4e6SHong Zhang     nrows       = 0;
48893e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
48903e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
48913e06a4e6SHong Zhang       if (anzi) {
48923e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
48933e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
48943e06a4e6SHong Zhang         nrows++;
48953e06a4e6SHong Zhang       }
48963e06a4e6SHong Zhang     }
48976497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
489802c68681SHong Zhang     k++;
48992257cef7SHong Zhang     buf_si += len_si[proc];
490002c68681SHong Zhang   }
49012257cef7SHong Zhang 
49029566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49039566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
490402c68681SHong Zhang 
49059566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
490648a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49073e06a4e6SHong Zhang 
49089566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49099566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49109566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49119566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49129566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49139566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49149566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
491558cb9c82SHong Zhang 
4916bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
491758cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
491958cb9c82SHong Zhang   bi[0] = 0;
492058cb9c82SHong Zhang 
4921be0fcf8dSHong Zhang   /* create and initialize a linked list */
4922be0fcf8dSHong Zhang   nlnk = N + 1;
49239566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
492458cb9c82SHong Zhang 
4925bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4926bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49279566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49282205254eSKarl Rupp 
492958cb9c82SHong Zhang   current_space = free_space;
493058cb9c82SHong Zhang 
4931bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49331d79065fSBarry Smith 
49343e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49352257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49363e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49373e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4938a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49393e06a4e6SHong Zhang   }
49402257cef7SHong Zhang 
4941d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4942bcc1bcd5SHong Zhang   len = 0;
494358cb9c82SHong Zhang   for (i = 0; i < m; i++) {
494458cb9c82SHong Zhang     bnzi = 0;
494558cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
494658cb9c82SHong Zhang     arow = owners[rank] + i;
494758cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
494858cb9c82SHong Zhang     aj   = a->j + ai[arow];
49499566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
495058cb9c82SHong Zhang     bnzi += nlnk;
495158cb9c82SHong Zhang     /* add received col data into lnk */
495251a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
495355d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
49543e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
49553e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
49569566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
49573e06a4e6SHong Zhang         bnzi += nlnk;
49589371c9d4SSatish Balay         nextrow[k]++;
49599371c9d4SSatish Balay         nextai[k]++;
49603e06a4e6SHong Zhang       }
496158cb9c82SHong Zhang     }
4962bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
496358cb9c82SHong Zhang 
496458cb9c82SHong Zhang     /* if free space is not available, make more free space */
496548a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
496658cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
49679566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
49689566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
4969bcc1bcd5SHong Zhang 
497058cb9c82SHong Zhang     current_space->array += bnzi;
497158cb9c82SHong Zhang     current_space->local_used += bnzi;
497258cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
497358cb9c82SHong Zhang 
497458cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
497558cb9c82SHong Zhang   }
4976bcc1bcd5SHong Zhang 
49779566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
4978bcc1bcd5SHong Zhang 
49799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
49809566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
49819566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
4982409913e3SHong Zhang 
4983bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
49849566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
49859566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
498654b84b50SHong Zhang   if (n == PETSC_DECIDE) {
49879566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
498854b84b50SHong Zhang   } else {
49899566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
499054b84b50SHong Zhang   }
49919566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
49929566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
49939566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
4994d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
49959566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
499658cb9c82SHong Zhang 
499790431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
49986abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
4999affca5deSHong Zhang   merge->bi        = bi;
5000affca5deSHong Zhang   merge->bj        = bj;
500102c68681SHong Zhang   merge->buf_ri    = buf_ri;
500202c68681SHong Zhang   merge->buf_rj    = buf_rj;
50030298fd71SBarry Smith   merge->coi       = NULL;
50040298fd71SBarry Smith   merge->coj       = NULL;
50050298fd71SBarry Smith   merge->owners_co = NULL;
5006affca5deSHong Zhang 
50079566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5008bf0cc555SLisandro Dalcin 
5009affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50109566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50119566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
501249abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50139566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50149566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5015affca5deSHong Zhang   *mpimat = B_mpi;
501638f152feSBarry Smith 
50179566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5019e5f2cdd8SHong Zhang }
502025616d81SHong Zhang 
5021cc4c1da9SBarry Smith /*@
502211a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5023d4036a1aSHong Zhang   matrices from each processor
5024d4036a1aSHong Zhang 
5025d083f849SBarry Smith   Collective
5026d4036a1aSHong Zhang 
5027d4036a1aSHong Zhang   Input Parameters:
5028d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5029d4036a1aSHong Zhang . seqmat - the input sequential matrices
503011a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
503111a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
503211a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5033d4036a1aSHong Zhang 
5034d4036a1aSHong Zhang   Output Parameter:
5035d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5036d4036a1aSHong Zhang 
5037d4036a1aSHong Zhang   Level: advanced
5038d4036a1aSHong Zhang 
503911a5261eSBarry Smith   Note:
5040d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5041d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
5042b6971eaeSBarry Smith   destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`.
50432ef1f0ffSBarry Smith 
50441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5045d4036a1aSHong Zhang @*/
5046d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5047d71ae5a4SJacob Faibussowitsch {
50487e63b356SHong Zhang   PetscMPIInt size;
504955d1abb9SHong Zhang 
505055d1abb9SHong Zhang   PetscFunctionBegin;
50519566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
50527e63b356SHong Zhang   if (size == 1) {
50539566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
50547e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
50559566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
50567e63b356SHong Zhang     } else {
50579566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
50587e63b356SHong Zhang     }
50599566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
50603ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
50617e63b356SHong Zhang   }
50629566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
506348a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
50649566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
50659566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
50663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
506755d1abb9SHong Zhang }
50684ebed01fSBarry Smith 
5069bc08b0f1SBarry Smith /*@
50702920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
50718a9c020eSBarry Smith 
50728a9c020eSBarry Smith   Not Collective
50738a9c020eSBarry Smith 
50742fe279fdSBarry Smith   Input Parameter:
507520f4b53cSBarry Smith . A - the matrix
50768a9c020eSBarry Smith 
50778a9c020eSBarry Smith   Output Parameter:
50788a9c020eSBarry Smith . A_loc - the local sequential matrix generated
50798a9c020eSBarry Smith 
50808a9c020eSBarry Smith   Level: developer
50818a9c020eSBarry Smith 
50828a9c020eSBarry Smith   Notes:
50832920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
50842920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
50852920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
50862920cce0SJacob Faibussowitsch 
508711a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
50888a9c020eSBarry Smith 
50892920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
50902920cce0SJacob Faibussowitsch 
509111a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
50928a9c020eSBarry Smith 
50931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
50948a9c020eSBarry Smith @*/
5095d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5096d71ae5a4SJacob Faibussowitsch {
50978a9c020eSBarry Smith   PetscBool mpi;
50988a9c020eSBarry Smith 
50998a9c020eSBarry Smith   PetscFunctionBegin;
51008a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51018a9c020eSBarry Smith   if (mpi) {
51028a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51038a9c020eSBarry Smith   } else {
51048a9c020eSBarry Smith     *A_loc = A;
51058a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51068a9c020eSBarry Smith   }
51073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51088a9c020eSBarry Smith }
51098a9c020eSBarry Smith 
51108a9c020eSBarry Smith /*@
51112920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
511225616d81SHong Zhang 
511332fba14fSHong Zhang   Not Collective
511425616d81SHong Zhang 
511525616d81SHong Zhang   Input Parameters:
511625616d81SHong Zhang + A     - the matrix
511711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
511825616d81SHong Zhang 
511925616d81SHong Zhang   Output Parameter:
512025616d81SHong Zhang . A_loc - the local sequential matrix generated
512125616d81SHong Zhang 
512225616d81SHong Zhang   Level: developer
512325616d81SHong Zhang 
512477c65a98SStefano Zampini   Notes:
51252920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51262920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51272920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51282920cce0SJacob Faibussowitsch 
512911a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51308a9c020eSBarry Smith 
51312920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51322920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51332920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51342920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
513577c65a98SStefano Zampini 
51361cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
513725616d81SHong Zhang @*/
5138d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5139d71ae5a4SJacob Faibussowitsch {
514001b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5141b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5142b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5143ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5144ce496241SStefano Zampini   PetscScalar       *ca, *cam;
514577c65a98SStefano Zampini   PetscMPIInt        size;
5146d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
51475a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
51488661ff28SBarry Smith   PetscBool          match;
514925616d81SHong Zhang 
515025616d81SHong Zhang   PetscFunctionBegin;
51519566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
515228b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
51539566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
515477c65a98SStefano Zampini   if (size == 1) {
515577c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
51569566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
515777c65a98SStefano Zampini       *A_loc = mpimat->A;
515877c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
51599566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
516077c65a98SStefano Zampini     }
51613ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
516277c65a98SStefano Zampini   }
516370a9ba44SHong Zhang 
51649566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5165f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5166f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
51679371c9d4SSatish Balay   ai = a->i;
51689371c9d4SSatish Balay   aj = a->j;
51699371c9d4SSatish Balay   bi = b->i;
51709371c9d4SSatish Balay   bj = b->j;
51719566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
51729566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5173ce496241SStefano Zampini   aa = aav;
5174ce496241SStefano Zampini   ba = bav;
517501b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
51769566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5177dea91ad1SHong Zhang     ci[0] = 0;
5178ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
51799566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
51809566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5181dea91ad1SHong Zhang     k = 0;
518201b7ae99SHong Zhang     for (i = 0; i < am; i++) {
51835a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
51845a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
518501b7ae99SHong Zhang       /* off-diagonal portion of A */
51865a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
51875a7d977cSHong Zhang         col = cmap[*bj];
51885a7d977cSHong Zhang         if (col >= cstart) break;
51899371c9d4SSatish Balay         cj[k] = col;
51909371c9d4SSatish Balay         bj++;
51915a7d977cSHong Zhang         ca[k++] = *ba++;
51925a7d977cSHong Zhang       }
51935a7d977cSHong Zhang       /* diagonal portion of A */
51945a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
51955a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
51965a7d977cSHong Zhang         ca[k++] = *aa++;
51975a7d977cSHong Zhang       }
51985a7d977cSHong Zhang       /* off-diagonal portion of A */
51995a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52005a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52015a7d977cSHong Zhang         ca[k++] = *ba++;
52025a7d977cSHong Zhang       }
520325616d81SHong Zhang     }
5204dea91ad1SHong Zhang     /* put together the new matrix */
52059566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5206dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5207dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5208dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5209e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5210e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5211dea91ad1SHong Zhang     mat->nonew   = 0;
52125a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52135a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5214fff043a9SJunchao Zhang     ci  = mat->i;
5215fff043a9SJunchao Zhang     cj  = mat->j;
52169566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52175a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52185a7d977cSHong Zhang       /* off-diagonal portion of A */
52195a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52205a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52215a7d977cSHong Zhang         col = cmap[*bj];
52225a7d977cSHong Zhang         if (col >= cstart) break;
52239371c9d4SSatish Balay         *cam++ = *ba++;
52249371c9d4SSatish Balay         bj++;
52255a7d977cSHong Zhang       }
52265a7d977cSHong Zhang       /* diagonal portion of A */
5227ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5228a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52295a7d977cSHong Zhang       /* off-diagonal portion of A */
5230f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52319371c9d4SSatish Balay         *cam++ = *ba++;
52329371c9d4SSatish Balay         bj++;
5233f33d1a9aSHong Zhang       }
52345a7d977cSHong Zhang     }
52359566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
523698921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52379566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52399566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
524125616d81SHong Zhang }
524225616d81SHong Zhang 
5243ed502f03SStefano Zampini /*@
524411a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52454cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5246ed502f03SStefano Zampini 
5247ed502f03SStefano Zampini   Not Collective
5248ed502f03SStefano Zampini 
5249ed502f03SStefano Zampini   Input Parameters:
5250ed502f03SStefano Zampini + A     - the matrix
525111a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5252ed502f03SStefano Zampini 
5253d8d19677SJose E. Roman   Output Parameters:
52542ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5255ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5256ed502f03SStefano Zampini 
5257ed502f03SStefano Zampini   Level: developer
5258ed502f03SStefano Zampini 
525911a5261eSBarry Smith   Note:
52602ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
52614cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5262ed502f03SStefano Zampini 
52631cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5264ed502f03SStefano Zampini @*/
5265d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5266d71ae5a4SJacob Faibussowitsch {
5267ed502f03SStefano Zampini   Mat             Ao, Ad;
5268ed502f03SStefano Zampini   const PetscInt *cmap;
5269ed502f03SStefano Zampini   PetscMPIInt     size;
5270ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5271ed502f03SStefano Zampini 
5272ed502f03SStefano Zampini   PetscFunctionBegin;
52739566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
52749566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5275ed502f03SStefano Zampini   if (size == 1) {
5276ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52779566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5278ed502f03SStefano Zampini       *A_loc = Ad;
5279ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52809566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5281ed502f03SStefano Zampini     }
52829566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
52833ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5284ed502f03SStefano Zampini   }
52859566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
52869566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5287ed502f03SStefano Zampini   if (f) {
52889566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5289ed502f03SStefano Zampini   } else {
5290ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5291ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5292ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5293ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5294ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5295ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5296ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5297ed502f03SStefano Zampini     PetscScalar       *ca;
5298ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5299ed502f03SStefano Zampini 
53009566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53019566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53029566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53039566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5304ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5305ed502f03SStefano Zampini       PetscInt k;
53069566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53079566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53089566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5309ed502f03SStefano Zampini       ci[0] = 0;
5310ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5311ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5312ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5313ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5314ed502f03SStefano Zampini         /* diagonal portion of A */
5315ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5316ed502f03SStefano Zampini           cj[k] = *aj++;
5317ed502f03SStefano Zampini           ca[k] = *aa++;
5318ed502f03SStefano Zampini         }
5319ed502f03SStefano Zampini         /* off-diagonal portion of A */
5320ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5321ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5322ed502f03SStefano Zampini           ca[k] = *ba++;
5323ed502f03SStefano Zampini         }
5324ed502f03SStefano Zampini       }
5325ed502f03SStefano Zampini       /* put together the new matrix */
53269566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5327ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5328ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5329ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5330ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5331ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5332ed502f03SStefano Zampini       c->nonew   = 0;
53339566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5334ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53359566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5336ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5337ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5338ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5339ed502f03SStefano Zampini         /* diagonal portion of A */
5340ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5341ed502f03SStefano Zampini         /* off-diagonal portion of A */
5342ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5343ed502f03SStefano Zampini       }
53449566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
534598921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53469566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
53479566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5348ed502f03SStefano Zampini     if (glob) {
5349ed502f03SStefano Zampini       PetscInt cst, *gidx;
5350ed502f03SStefano Zampini 
53519566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
53529566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5353ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5354ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
53559566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5356ed502f03SStefano Zampini     }
5357ed502f03SStefano Zampini   }
53589566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
53593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5360ed502f03SStefano Zampini }
5361ed502f03SStefano Zampini 
536232fba14fSHong Zhang /*@C
536311a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
536432fba14fSHong Zhang 
536532fba14fSHong Zhang   Not Collective
536632fba14fSHong Zhang 
536732fba14fSHong Zhang   Input Parameters:
536832fba14fSHong Zhang + A     - the matrix
536911a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
537020f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
537120f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
537232fba14fSHong Zhang 
537332fba14fSHong Zhang   Output Parameter:
537432fba14fSHong Zhang . A_loc - the local sequential matrix generated
537532fba14fSHong Zhang 
537632fba14fSHong Zhang   Level: developer
537732fba14fSHong Zhang 
53781cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
537932fba14fSHong Zhang @*/
5380d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5381d71ae5a4SJacob Faibussowitsch {
538232fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
538332fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
538432fba14fSHong Zhang   IS          isrowa, iscola;
538532fba14fSHong Zhang   Mat        *aloc;
53864a2b5492SBarry Smith   PetscBool   match;
538732fba14fSHong Zhang 
538832fba14fSHong Zhang   PetscFunctionBegin;
53899566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
539028b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
53919566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
539232fba14fSHong Zhang   if (!row) {
53939371c9d4SSatish Balay     start = A->rmap->rstart;
53949371c9d4SSatish Balay     end   = A->rmap->rend;
53959566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
539632fba14fSHong Zhang   } else {
539732fba14fSHong Zhang     isrowa = *row;
539832fba14fSHong Zhang   }
539932fba14fSHong Zhang   if (!col) {
5400d0f46423SBarry Smith     start = A->cmap->rstart;
540132fba14fSHong Zhang     cmap  = a->garray;
5402d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5403d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54049566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
540532fba14fSHong Zhang     ncols = 0;
540632fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
540732fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
540832fba14fSHong Zhang       else break;
540932fba14fSHong Zhang     }
541032fba14fSHong Zhang     imark = i;
541132fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
541232fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54139566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
541432fba14fSHong Zhang   } else {
541532fba14fSHong Zhang     iscola = *col;
541632fba14fSHong Zhang   }
541732fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54189566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
541932fba14fSHong Zhang     aloc[0] = *A_loc;
542032fba14fSHong Zhang   }
54219566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5422109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54239566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5424109e0772SStefano Zampini   }
542532fba14fSHong Zhang   *A_loc = aloc[0];
54269566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
542748a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
542848a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54299566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
543132fba14fSHong Zhang }
543232fba14fSHong Zhang 
54335c65b9ecSFande Kong /*
54345c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54355c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54365c65b9ecSFande Kong  * on a global size.
54375c65b9ecSFande Kong  * */
5438ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5439d71ae5a4SJacob Faibussowitsch {
54405c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5441f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5442131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5443131c27b5Sprj-   PetscMPIInt            owner;
54445c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54455c65b9ecSFande Kong   const PetscInt        *lrowindices;
54465c65b9ecSFande Kong   PetscSF                sf, osf;
54475c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
54485c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
54495c65b9ecSFande Kong   MPI_Comm               comm;
54505c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5451fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
54525c65b9ecSFande Kong 
54535c65b9ecSFande Kong   PetscFunctionBegin;
54549566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
54555c65b9ecSFande Kong   /* plocalsize is the number of roots
54565c65b9ecSFande Kong    * nrows is the number of leaves
54575c65b9ecSFande Kong    * */
54589566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
54599566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
54609566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
54619566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
54625c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
54635c65b9ecSFande Kong     /* Find a remote index and an owner for a row
54645c65b9ecSFande Kong      * The row could be local or remote
54655c65b9ecSFande Kong      * */
546634bcad68SFande Kong     owner = 0;
546734bcad68SFande Kong     lidx  = 0;
54689566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
54695c65b9ecSFande Kong     iremote[i].index = lidx;
54705c65b9ecSFande Kong     iremote[i].rank  = owner;
54715c65b9ecSFande Kong   }
54725c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
54739566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5474f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
54755c65b9ecSFande Kong    * offsets
54765c65b9ecSFande Kong    * */
54779566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
54789566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
54799566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5480bc8e477aSFande Kong 
54819566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
54829566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
54839566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
54845c65b9ecSFande Kong   roffsets[0] = 0;
54855c65b9ecSFande Kong   roffsets[1] = 0;
54865c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
54874cf0e950SBarry Smith     /* diagonal */
54885c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
54894cf0e950SBarry Smith     /* off-diagonal */
54905c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
54915c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
54925c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
54935c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
54945c65b9ecSFande Kong   }
54959566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
54969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
54975c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
54989566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
54999566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55009566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55019566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55029566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55039566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55049566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55055c65b9ecSFande Kong   dntotalcols = 0;
55065c65b9ecSFande Kong   ontotalcols = 0;
5507bc8e477aSFande Kong   ncol        = 0;
55085c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55095c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5510bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55114cf0e950SBarry Smith     /* diagonal */
55125c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55134cf0e950SBarry Smith     /* off-diagonal */
55145c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55155c65b9ecSFande Kong   }
55165c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55175c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55185c65b9ecSFande Kong    * */
55199566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55209566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55219566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55225c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55234cf0e950SBarry Smith   /* diagonal */
55249566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55254cf0e950SBarry Smith   /* off-diagonal */
55269566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55274cf0e950SBarry Smith   /* diagonal */
55289566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55294cf0e950SBarry Smith   /* off-diagonal */
55309566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55315c65b9ecSFande Kong   dntotalcols = 0;
55325c65b9ecSFande Kong   ontotalcols = 0;
55335c65b9ecSFande Kong   ntotalcols  = 0;
55345c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
553534bcad68SFande Kong     owner = 0;
55369566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55375c65b9ecSFande Kong     /* Set iremote for diag matrix */
55385c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55395c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55405c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55415c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55425c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55435c65b9ecSFande Kong     }
55444cf0e950SBarry Smith     /* off-diagonal */
55455c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
55465c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
55475c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
55485c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
55495c65b9ecSFande Kong     }
55505c65b9ecSFande Kong   }
55519566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
55529566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
55539566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
55549566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
55555c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
55565c65b9ecSFande Kong    * Diag matrix
55575c65b9ecSFande Kong    * */
55589566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55599566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55609566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
55615c65b9ecSFande Kong 
55629566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
55634cf0e950SBarry Smith   /* off-diagonal */
55649566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
55659566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
55669566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
55679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
55689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
55694cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
55709566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
55719566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
55729566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
55735c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
55745c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
55759566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
55765c65b9ecSFande Kong   /* We want P_oth store global indices */
55779566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
55785c65b9ecSFande Kong   /* Use memory scalable approach */
55799566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
55809566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
55819566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
55829566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
55835c65b9ecSFande Kong   /* Convert back to local indices */
55845c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
55859566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
55865c65b9ecSFande Kong   nout = 0;
55879566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
558808401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
55899566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
55905c65b9ecSFande Kong   /* Exchange values */
55919566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
55929566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
55939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
55949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
55955c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
55965c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
55979566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
55989566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
55995c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56009566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56019566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56029566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56039566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56055c65b9ecSFande Kong }
56065c65b9ecSFande Kong 
56075c65b9ecSFande Kong /*
56085c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56095c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56105c65b9ecSFande Kong  * */
5611d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5612d71ae5a4SJacob Faibussowitsch {
56135c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5614bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5615bc8e477aSFande Kong   IS          rows, map;
5616bc8e477aSFande Kong   PetscHMapI  hamp;
5617bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56185c65b9ecSFande Kong   MPI_Comm    comm;
56195c65b9ecSFande Kong   PetscSF     sf, osf;
5620bc8e477aSFande Kong   PetscBool   has;
56215c65b9ecSFande Kong 
56225c65b9ecSFande Kong   PetscFunctionBegin;
56239566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56249566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56255c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56265c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56275c65b9ecSFande Kong    * */
56285c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56295c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5630eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56319566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5632bc8e477aSFande Kong     count = 0;
5633bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5634bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5635bc8e477aSFande Kong       key = a->garray[i] / dof;
56369566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5637bc8e477aSFande Kong       if (!has) {
5638bc8e477aSFande Kong         mapping[i] = count;
56399566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5640bc8e477aSFande Kong       } else {
5641bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5642bc8e477aSFande Kong         mapping[i] = count - 1;
56435c65b9ecSFande Kong       }
5644bc8e477aSFande Kong     }
56459566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
56469566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5647eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
56489566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
56495c65b9ecSFande Kong     off = 0;
56509566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
56519566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
56529566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
56539566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
56545c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
56559566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
56569566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
56579566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
56589566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
56599566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
56605c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
56615c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
566235cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5663fff043a9SJunchao Zhang      */
5664fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5665fff043a9SJunchao Zhang 
56669566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
56679566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
566808401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
56695c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
56705c65b9ecSFande Kong     /* Update values in place */
56719566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56729566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56739566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56749566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56759566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56769566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56779566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56789566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56796718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
56809566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
56813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56825c65b9ecSFande Kong }
56835c65b9ecSFande Kong 
568425616d81SHong Zhang /*@C
568520f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
568625616d81SHong Zhang 
5687c3339decSBarry Smith   Collective
568825616d81SHong Zhang 
568925616d81SHong Zhang   Input Parameters:
569011a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
569111a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
569211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
569325616d81SHong Zhang 
5694f1a722f8SMatthew G. Knepley   Output Parameters:
569527430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
569627430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5697f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
569825616d81SHong Zhang 
569925616d81SHong Zhang   Level: developer
570025616d81SHong Zhang 
570120f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
570225616d81SHong Zhang @*/
5703d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5704d71ae5a4SJacob Faibussowitsch {
5705899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5706b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
570725616d81SHong Zhang   IS          isrowb, iscolb;
57080298fd71SBarry Smith   Mat        *bseq = NULL;
570925616d81SHong Zhang 
571025616d81SHong Zhang   PetscFunctionBegin;
571120f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
571220f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57139566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
571425616d81SHong Zhang 
571525616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5716d0f46423SBarry Smith     start = A->cmap->rstart;
571725616d81SHong Zhang     cmap  = a->garray;
5718d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5719d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57209566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
572125616d81SHong Zhang     ncols = 0;
57220390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
572325616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
572425616d81SHong Zhang       else break;
572525616d81SHong Zhang     }
572625616d81SHong Zhang     imark = i;
57270390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57280390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57299566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57309566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
573125616d81SHong Zhang   } else {
573208401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57339371c9d4SSatish Balay     isrowb = *rowb;
57349371c9d4SSatish Balay     iscolb = *colb;
57359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
573625616d81SHong Zhang     bseq[0] = *B_seq;
573725616d81SHong Zhang   }
57389566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
573925616d81SHong Zhang   *B_seq = bseq[0];
57409566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
574125616d81SHong Zhang   if (!rowb) {
57429566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
574325616d81SHong Zhang   } else {
574425616d81SHong Zhang     *rowb = isrowb;
574525616d81SHong Zhang   }
574625616d81SHong Zhang   if (!colb) {
57479566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
574825616d81SHong Zhang   } else {
574925616d81SHong Zhang     *colb = iscolb;
575025616d81SHong Zhang   }
57519566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
57523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
575325616d81SHong Zhang }
5754429d309bSHong Zhang 
5755f8487c73SHong Zhang /*
575627430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
575701b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5758429d309bSHong Zhang 
5759c3339decSBarry Smith     Collective
5760429d309bSHong Zhang 
5761429d309bSHong Zhang    Input Parameters:
576227430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
576327430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5764429d309bSHong Zhang 
5765429d309bSHong Zhang    Output Parameter:
57660298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
57670298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
57680298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5769598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5770429d309bSHong Zhang 
577111a5261eSBarry Smith     Developer Note:
577211a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
57736eb45d04SBarry Smith      for this matrix. This is not desirable..
57746eb45d04SBarry Smith 
5775429d309bSHong Zhang     Level: developer
5776429d309bSHong Zhang 
5777f8487c73SHong Zhang */
57786497c311SBarry Smith 
5779d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5780d71ae5a4SJacob Faibussowitsch {
5781899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
57824b8d542aSHong Zhang   VecScatter         ctx;
5783ce94432eSBarry Smith   MPI_Comm           comm;
57843515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
57856497c311SBarry Smith   PetscMPIInt        nrecvs, nsends;
57863515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5787277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
57886497c311SBarry Smith   PetscInt           i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len;
5789277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5790ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5791ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5792429d309bSHong Zhang 
5793429d309bSHong Zhang   PetscFunctionBegin;
57949566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
57959566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5796a7c7454dSHong Zhang 
579720f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
579820f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5801a6b2eed2SHong Zhang 
5802ec07b8f8SHong Zhang   if (size == 1) {
5803ec07b8f8SHong Zhang     startsj_s = NULL;
5804ec07b8f8SHong Zhang     bufa_ptr  = NULL;
580552f7967eSHong Zhang     *B_oth    = NULL;
58063ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5807ec07b8f8SHong Zhang   }
5808ec07b8f8SHong Zhang 
5809fa83eaafSHong Zhang   ctx = a->Mvctx;
58104b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58114b8d542aSHong Zhang 
58129566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58133515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58149566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58159566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5817ddea5d60SJunchao Zhang   rwaits = reqs;
58188e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5819429d309bSHong Zhang 
5820b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5821429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5822a6b2eed2SHong Zhang     /* i-array */
5823a6b2eed2SHong Zhang     /*  post receives */
58249566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5825a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
582674268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5827e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58286497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5829429d309bSHong Zhang     }
5830a6b2eed2SHong Zhang 
5831a6b2eed2SHong Zhang     /* pack the outgoing message */
58329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58332205254eSKarl Rupp 
58342205254eSKarl Rupp     sstartsj[0] = 0;
58352205254eSKarl Rupp     rstartsj[0] = 0;
5836a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58373515ee7fSJunchao Zhang     if (nsends) {
58383515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58399566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58403515ee7fSJunchao Zhang     }
5841a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58423515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5843e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
584487025532SHong Zhang       for (j = 0; j < nrows; j++) {
5845d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5846e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
58479566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
58482205254eSKarl Rupp 
5849e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
58502205254eSKarl Rupp 
5851e42f35eeSHong Zhang           len += ncols;
58529566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5853e42f35eeSHong Zhang         }
5854a6b2eed2SHong Zhang         k++;
5855429d309bSHong Zhang       }
58566497c311SBarry Smith       PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
58572205254eSKarl Rupp 
5858dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5859429d309bSHong Zhang     }
586087025532SHong Zhang     /* recvs and sends of i-array are completed */
58619566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
58629566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5863e42f35eeSHong Zhang 
5864a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
58659566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
58669566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5867a6b2eed2SHong Zhang 
586887025532SHong Zhang     /* create i-array of B_oth */
58699566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
58702205254eSKarl Rupp 
587187025532SHong Zhang     b_othi[0] = 0;
5872a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5873a6b2eed2SHong Zhang     k         = 0;
5874a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
58753515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
58763515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
587787025532SHong Zhang       for (j = 0; j < nrows; j++) {
587887025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
58799566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5880f91af8c7SBarry Smith         k++;
5881a6b2eed2SHong Zhang       }
5882dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5883a6b2eed2SHong Zhang     }
58849566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5885a6b2eed2SHong Zhang 
58866aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
58879566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
58889566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5889a6b2eed2SHong Zhang 
589087025532SHong Zhang     /* j-array */
5891a6b2eed2SHong Zhang     /*  post receives of j-array */
5892a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
589387025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
58946497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5895a6b2eed2SHong Zhang     }
5896e42f35eeSHong Zhang 
5897e42f35eeSHong Zhang     /* pack the outgoing message j-array */
58983515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5899a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5900e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5901a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
590287025532SHong Zhang       for (j = 0; j < nrows; j++) {
5903d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5904e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59059566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5906ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59079566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5908e42f35eeSHong Zhang         }
590987025532SHong Zhang       }
59106497c311SBarry Smith       PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
591187025532SHong Zhang     }
591287025532SHong Zhang 
591387025532SHong Zhang     /* recvs and sends of j-array are completed */
59149566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
591587025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5916b7f45c76SHong Zhang     sstartsj = *startsj_s;
59171d79065fSBarry Smith     rstartsj = *startsj_r;
591887025532SHong Zhang     bufa     = *bufa_ptr;
59199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5920ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
592187025532SHong Zhang 
592287025532SHong Zhang   /* a-array */
592387025532SHong Zhang   /*  post receives of a-array */
592487025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
592587025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59266497c311SBarry Smith     PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
592787025532SHong Zhang   }
5928e42f35eeSHong Zhang 
5929e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59303515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
593187025532SHong Zhang   for (i = 0; i < nsends; i++) {
5932e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
593387025532SHong Zhang     bufA  = bufa + sstartsj[i];
593487025532SHong Zhang     for (j = 0; j < nrows; j++) {
5935d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5936e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59379566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5938ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59399566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5940e42f35eeSHong Zhang       }
5941a6b2eed2SHong Zhang     }
59426497c311SBarry Smith     PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5943a6b2eed2SHong Zhang   }
594487025532SHong Zhang   /* recvs and sends of a-array are completed */
59459566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59469566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
5947a6b2eed2SHong Zhang 
594887025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5949dd460d27SBarry Smith     Mat_SeqAIJ *b_oth;
5950dd460d27SBarry Smith 
5951a6b2eed2SHong Zhang     /* put together the new matrix */
59529566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
5953a6b2eed2SHong Zhang 
5954a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5955a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
595687025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
5957e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
5958e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
595987025532SHong Zhang     b_oth->nonew   = 0;
5960a6b2eed2SHong Zhang 
59619566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
5962b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
59639566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
59649566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
5965dea91ad1SHong Zhang     } else {
5966b7f45c76SHong Zhang       *startsj_s = sstartsj;
59671d79065fSBarry Smith       *startsj_r = rstartsj;
596887025532SHong Zhang       *bufa_ptr  = bufa;
596987025532SHong Zhang     }
5970fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
59719566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
5972dea91ad1SHong Zhang   }
59733515ee7fSJunchao Zhang 
59749566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
59759566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
59769566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
59773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5978429d309bSHong Zhang }
5979ccd8e176SBarry Smith 
5980cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
5981cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
5982ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
59839779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
5984a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
5985191b95cbSRichard Tran Mills #endif
5986ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
5987cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
59885d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
5989cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
59905d7652ecSHong Zhang #endif
5991d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
5992d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
5993d24d4204SJose E. Roman #endif
599463c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
599563c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
599663c07aadSStefano Zampini #endif
59973338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
59983338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
59993338378cSStefano Zampini #endif
6000d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6001d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6002d5e393b6SSuyash Tandon #endif
60033d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60043d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60053d0639e7SStefano Zampini #endif
6006d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60074222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60084222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
600917667f90SBarry Smith 
6010fc4dec0aSBarry Smith /*
6011fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6012fc4dec0aSBarry Smith 
6013fc4dec0aSBarry Smith                n                       p                          p
60142da392ccSBarry Smith         [             ]       [             ]         [                 ]
60152da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60162da392ccSBarry Smith         [             ]       [             ]         [                 ]
6017fc4dec0aSBarry Smith 
6018fc4dec0aSBarry Smith */
6019d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6020d71ae5a4SJacob Faibussowitsch {
6021fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6022fc4dec0aSBarry Smith 
6023fc4dec0aSBarry Smith   PetscFunctionBegin;
60249566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60259566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
6026fb842aefSJose E. Roman   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct));
60279566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60289566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60297fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60309566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60319566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6033fc4dec0aSBarry Smith }
6034fc4dec0aSBarry Smith 
6035d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6036d71ae5a4SJacob Faibussowitsch {
60376718818eSStefano Zampini   PetscBool cisdense;
6038fc4dec0aSBarry Smith 
6039fc4dec0aSBarry Smith   PetscFunctionBegin;
604008401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60419566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60429566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6043d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
604448a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60459566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6046f75ecaa4SHong Zhang 
60474222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
60483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6049fc4dec0aSBarry Smith }
6050fc4dec0aSBarry Smith 
6051d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6052d71ae5a4SJacob Faibussowitsch {
60534222ddf1SHong Zhang   Mat_Product *product = C->product;
60544222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6055fc4dec0aSBarry Smith 
6056fc4dec0aSBarry Smith   PetscFunctionBegin;
605720f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
605820f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
60594222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
60604222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
60613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6062fc4dec0aSBarry Smith }
6063fc4dec0aSBarry Smith 
6064d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6065d71ae5a4SJacob Faibussowitsch {
60664222ddf1SHong Zhang   Mat_Product *product = C->product;
60674222ddf1SHong Zhang 
60684222ddf1SHong Zhang   PetscFunctionBegin;
606948a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
60703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60714222ddf1SHong Zhang }
6072394ed5ebSJunchao Zhang 
607327430b45SBarry Smith /*
607427430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6075394ed5ebSJunchao Zhang 
6076394ed5ebSJunchao Zhang   Input Parameters:
6077394ed5ebSJunchao Zhang 
6078651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6079651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6080394ed5ebSJunchao Zhang 
6081158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6082394ed5ebSJunchao Zhang 
6083394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6084394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6085394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6086394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6087394ed5ebSJunchao Zhang 
6088394ed5ebSJunchao Zhang     Similar for Set2.
6089394ed5ebSJunchao Zhang 
6090394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6091394ed5ebSJunchao Zhang 
6092158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6093394ed5ebSJunchao Zhang 
6094394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6095394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6096394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6097394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6098394ed5ebSJunchao Zhang */
6099d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6100d71ae5a4SJacob Faibussowitsch {
6101394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6102394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6103394ed5ebSJunchao Zhang 
6104394ed5ebSJunchao Zhang   PetscFunctionBegin;
61059566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6106394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6107394ed5ebSJunchao Zhang   i[0]        = 0;
6108394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6109394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6110394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6111394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6112394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6113394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6114394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6115394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6116394ed5ebSJunchao Zhang         imap1[t1] = t;
6117394ed5ebSJunchao Zhang         imap2[t2] = t;
6118394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6119394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61209371c9d4SSatish Balay         t1++;
61219371c9d4SSatish Balay         t2++;
61229371c9d4SSatish Balay         t++;
6123394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6124394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6125394ed5ebSJunchao Zhang         imap1[t1] = t;
6126394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61279371c9d4SSatish Balay         t1++;
61289371c9d4SSatish Balay         t++;
6129394ed5ebSJunchao Zhang       } else {
6130394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6131394ed5ebSJunchao Zhang         imap2[t2] = t;
6132394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61339371c9d4SSatish Balay         t2++;
61349371c9d4SSatish Balay         t++;
6135394ed5ebSJunchao Zhang       }
6136394ed5ebSJunchao Zhang     }
6137394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6138394ed5ebSJunchao Zhang     while (b1 < e1) {
6139394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6140394ed5ebSJunchao Zhang       imap1[t1] = t;
6141394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61429371c9d4SSatish Balay       t1++;
61439371c9d4SSatish Balay       t++;
6144394ed5ebSJunchao Zhang     }
6145394ed5ebSJunchao Zhang     while (b2 < e2) {
6146394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6147394ed5ebSJunchao Zhang       imap2[t2] = t;
6148394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
61499371c9d4SSatish Balay       t2++;
61509371c9d4SSatish Balay       t++;
6151394ed5ebSJunchao Zhang     }
61526497c311SBarry Smith     PetscCall(PetscIntCast(t, i + r + 1));
6153394ed5ebSJunchao Zhang   }
61543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6155394ed5ebSJunchao Zhang }
6156394ed5ebSJunchao Zhang 
615727430b45SBarry Smith /*
615827430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6159394ed5ebSJunchao Zhang 
6160394ed5ebSJunchao Zhang   Input Parameters:
6161394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6162394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6163394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6164394ed5ebSJunchao Zhang 
6165394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6166394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6167394ed5ebSJunchao Zhang 
6168394ed5ebSJunchao Zhang   Output Parameters:
6169394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6170394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6171394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6172394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6173394ed5ebSJunchao Zhang 
6174394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6175158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6176158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6177394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6178394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6179394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6180394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6181394ed5ebSJunchao Zhang 
6182394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6183394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6184394ed5ebSJunchao Zhang 
6185394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6186394ed5ebSJunchao Zhang 
6187158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6188394ed5ebSJunchao Zhang */
6189d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6190d71ae5a4SJacob Faibussowitsch {
6191394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6192394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6193394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6194394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6195394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6196394ed5ebSJunchao Zhang 
6197394ed5ebSJunchao Zhang   PetscFunctionBegin;
61989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
61999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6200394ed5ebSJunchao Zhang   m = rend - rstart;
6201394ed5ebSJunchao Zhang 
6202651b1cf9SStefano Zampini   /* Skip negative rows */
6203651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62049371c9d4SSatish Balay     if (i[k] >= 0) break;
6205394ed5ebSJunchao Zhang 
6206394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6207394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6208394ed5ebSJunchao Zhang   */
6209394ed5ebSJunchao Zhang   while (k < n) {
6210394ed5ebSJunchao Zhang     row = i[k];
6211394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62129371c9d4SSatish Balay     for (s = k; s < n; s++)
62139371c9d4SSatish Balay       if (i[s] != row) break;
6214651b1cf9SStefano Zampini 
62151690c2aeSBarry Smith     /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */
6216394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
62171690c2aeSBarry Smith       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX;
621854c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6219394ed5ebSJunchao Zhang     }
62209566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6221158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6222394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6223394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6224394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6225394ed5ebSJunchao Zhang 
6226394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6227394ed5ebSJunchao Zhang     Atot += mid - k;
6228394ed5ebSJunchao Zhang     Btot += s - mid;
6229394ed5ebSJunchao Zhang 
6230651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6231394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6232394ed5ebSJunchao Zhang       col = j[p];
62339371c9d4SSatish Balay       do {
62341690c2aeSBarry Smith         j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */
62359371c9d4SSatish Balay         p++;
6236651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6237394ed5ebSJunchao Zhang       Annz++;
6238394ed5ebSJunchao Zhang     }
6239394ed5ebSJunchao Zhang 
6240651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6241394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6242394ed5ebSJunchao Zhang       col = j[p];
6243d71ae5a4SJacob Faibussowitsch       do {
6244d71ae5a4SJacob Faibussowitsch         p++;
6245d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6246394ed5ebSJunchao Zhang       Bnnz++;
6247394ed5ebSJunchao Zhang     }
6248394ed5ebSJunchao Zhang     k = s;
6249394ed5ebSJunchao Zhang   }
6250394ed5ebSJunchao Zhang 
6251394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6252158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6253158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6254158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6255158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6256394ed5ebSJunchao Zhang 
62576aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6258394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6259394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6260394ed5ebSJunchao Zhang     k   = rowBegin[r];
6261394ed5ebSJunchao Zhang     mid = rowMid[r];
6262394ed5ebSJunchao Zhang     s   = rowEnd[r];
62638e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
62648e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6265394ed5ebSJunchao Zhang     Atot += mid - k;
6266394ed5ebSJunchao Zhang     Btot += s - mid;
6267394ed5ebSJunchao Zhang 
6268394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6269394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6270394ed5ebSJunchao Zhang       col = j[p];
6271394ed5ebSJunchao Zhang       q   = p;
6272d71ae5a4SJacob Faibussowitsch       do {
6273d71ae5a4SJacob Faibussowitsch         p++;
6274d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6275394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6276394ed5ebSJunchao Zhang       Annz++;
6277394ed5ebSJunchao Zhang     }
6278394ed5ebSJunchao Zhang 
6279394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6280394ed5ebSJunchao Zhang       col = j[p];
6281394ed5ebSJunchao Zhang       q   = p;
6282d71ae5a4SJacob Faibussowitsch       do {
6283d71ae5a4SJacob Faibussowitsch         p++;
6284d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6285394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6286394ed5ebSJunchao Zhang       Bnnz++;
6287394ed5ebSJunchao Zhang     }
6288394ed5ebSJunchao Zhang   }
6289394ed5ebSJunchao Zhang   /* Output */
6290394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6291394ed5ebSJunchao Zhang   *Annz_  = Annz;
6292394ed5ebSJunchao Zhang   *Atot_  = Atot;
6293394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6294394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6295394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6296394ed5ebSJunchao Zhang   *Btot_  = Btot;
6297394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
62983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6299394ed5ebSJunchao Zhang }
6300394ed5ebSJunchao Zhang 
630127430b45SBarry Smith /*
630227430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6303158ec288SJunchao Zhang 
6304158ec288SJunchao Zhang   Input Parameters:
6305158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6306158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6307158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6308651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6309158ec288SJunchao Zhang 
6310158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6311158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6312158ec288SJunchao Zhang 
6313158ec288SJunchao Zhang   Example:
6314158ec288SJunchao Zhang     nnz1 = 4
6315158ec288SJunchao Zhang     nnz  = 6
6316158ec288SJunchao Zhang     imap = [1,3,4,5]
6317158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6318158ec288SJunchao Zhang    then,
6319158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6320158ec288SJunchao Zhang */
6321d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6322d71ae5a4SJacob Faibussowitsch {
6323158ec288SJunchao Zhang   PetscCount k, p;
6324158ec288SJunchao Zhang 
6325158ec288SJunchao Zhang   PetscFunctionBegin;
6326158ec288SJunchao Zhang   jmap_new[0] = 0;
6327158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6328158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6329158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6330158ec288SJunchao Zhang   }
6331158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6333158ec288SJunchao Zhang }
6334158ec288SJunchao Zhang 
633549abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data)
63362c4ab24aSJunchao Zhang {
633749abdd8aSBarry Smith   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data;
63382c4ab24aSJunchao Zhang 
63392c4ab24aSJunchao Zhang   PetscFunctionBegin;
63402c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63412c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63422c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63432c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63442c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63452c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
63462c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
63472c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
63482c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
63492c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
63502c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
63512c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
63522c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
63532c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
63542c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
63552c4ab24aSJunchao Zhang }
63562c4ab24aSJunchao Zhang 
6357d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6358d71ae5a4SJacob Faibussowitsch {
6359394ed5ebSJunchao Zhang   MPI_Comm             comm;
6360394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6361394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6362394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6363394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
63642c4ab24aSJunchao Zhang   PetscContainer       container;
63652c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6366394ed5ebSJunchao Zhang 
6367394ed5ebSJunchao Zhang   PetscFunctionBegin;
63689566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
63699566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6370cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6371eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6372cbc6b225SStefano Zampini #else
63739566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6374cbc6b225SStefano Zampini #endif
63759566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6376cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6377cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6378cbc6b225SStefano Zampini 
63799566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
63809566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
63819566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
63829566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
63839566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
63849566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
63859566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
63869566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
63879566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6388394ed5ebSJunchao Zhang 
63896aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6390394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6391394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6392e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6393e8729f6fSJunchao Zhang 
6394e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6395394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6396394ed5ebSJunchao Zhang 
6397394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6398394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6399394ed5ebSJunchao Zhang      will have positive row indices.
6400394ed5ebSJunchao Zhang   */
6401394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
64021690c2aeSBarry Smith     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN;                /* e.g., -2^31, minimal to move them ahead */
64031690c2aeSBarry Smith     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */
6404f7d195e4SLawrence Mitchell     else {
6405f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
64061690c2aeSBarry Smith       if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */
6407f7d195e4SLawrence Mitchell     }
6408394ed5ebSJunchao Zhang   }
6409394ed5ebSJunchao Zhang 
6410da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64119566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6412651b1cf9SStefano Zampini 
6413651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6414651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64151690c2aeSBarry Smith     if (i1[k] > PETSC_INT_MIN) break;
64166497c311SBarry Smith   PetscCount i1start = k;
6417651b1cf9SStefano Zampini 
64181690c2aeSBarry Smith   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */
64191690c2aeSBarry Smith   for (; k < rem; k++) i1[k] += PETSC_INT_MAX;                                    /* Revert row indices of local rows*/
6420394ed5ebSJunchao Zhang 
6421394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6422394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6423394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6424394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6425394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6426394ed5ebSJunchao Zhang   const PetscInt *ranges;
6427394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6428394ed5ebSJunchao Zhang 
64299566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6431394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6432394ed5ebSJunchao Zhang     PetscMPIInt owner;
6433394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6434cbc6b225SStefano Zampini 
6435394ed5ebSJunchao Zhang     /* Locate a row range */
6436394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64379566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6438394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6439394ed5ebSJunchao Zhang 
6440394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
64419566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6442394ed5ebSJunchao Zhang 
6443394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6444394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6445394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6446394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6447394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6448cbc6b225SStefano Zampini 
64499566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
64509566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
64519566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
64529566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6453394ed5ebSJunchao Zhang       sendto   = sendto2;
6454394ed5ebSJunchao Zhang       nentries = nentries2;
6455394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6456394ed5ebSJunchao Zhang     }
6457394ed5ebSJunchao Zhang     sendto[nsend] = owner;
64586497c311SBarry Smith     PetscCall(PetscIntCast(p - k, &nentries[nsend]));
6459394ed5ebSJunchao Zhang     nsend++;
6460394ed5ebSJunchao Zhang     k = p;
6461394ed5ebSJunchao Zhang   }
6462394ed5ebSJunchao Zhang 
6463394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6464394ed5ebSJunchao Zhang   PetscSF      sf1;
6465394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6466394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6467394ed5ebSJunchao Zhang   PetscInt    *offsets;
6468394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6469394ed5ebSJunchao Zhang 
64709566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
64719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
64729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6473394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6474394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6475394ed5ebSJunchao Zhang     iremote[k].index = 0;
6476394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
647754c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6478394ed5ebSJunchao Zhang   }
64799566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
64809566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
64819566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
64829566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6483e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6484394ed5ebSJunchao Zhang 
6485394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6486394ed5ebSJunchao Zhang   PetscSF sf2;
6487394ed5ebSJunchao Zhang   nroots  = nroots2;
6488394ed5ebSJunchao Zhang   nleaves = nleaves2;
64899566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
64909566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
64919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6492394ed5ebSJunchao Zhang   p = 0;
6493394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
649454c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6495394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6496394ed5ebSJunchao Zhang       iremote[p].rank = sendto[k];
64976497c311SBarry Smith       PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index));
6498394ed5ebSJunchao Zhang     }
6499394ed5ebSJunchao Zhang   }
65009566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6501394ed5ebSJunchao Zhang 
6502394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6503394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6504394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6506834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6507834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6508de0a9f35SPierre Jolivet   PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem);
6509de0a9f35SPierre Jolivet   PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem);
6510834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6511834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6512834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6513834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6514394ed5ebSJunchao Zhang 
65159566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65169566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6517394ed5ebSJunchao Zhang 
6518394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6519394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65209566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6521394ed5ebSJunchao Zhang 
6522651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6523651b1cf9SStefano Zampini   PetscCount *Cperm1;
6524834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6525de0a9f35SPierre Jolivet   PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem);
6526651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6527834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6528651b1cf9SStefano Zampini 
6529651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6530651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6531651b1cf9SStefano Zampini   PetscBool hypre;
653217b874c6SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre));
6533651b1cf9SStefano Zampini   if (hypre) {
6534651b1cf9SStefano Zampini     PetscInt *minj;
6535651b1cf9SStefano Zampini     PetscBT   hasdiag;
6536651b1cf9SStefano Zampini 
6537651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6538651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
65391690c2aeSBarry Smith     for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX;
6540651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6541651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6542651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6543651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6544651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6545651b1cf9SStefano Zampini     }
6546651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6547651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6548651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6549651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6550651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6551651b1cf9SStefano Zampini     }
6552651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6553651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6554651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6555651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6556651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6557651b1cf9SStefano Zampini     }
6558651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6559651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6560651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6561651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6562651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6563651b1cf9SStefano Zampini     }
6564651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6565651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6566651b1cf9SStefano Zampini   }
6567651b1cf9SStefano Zampini 
6568651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6569651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6570651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6571651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6572394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6573394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6574394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6575394ed5ebSJunchao Zhang 
6576651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
65779566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6578651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
65799566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6580394ed5ebSJunchao Zhang 
6581394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6582394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6583394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6584394ed5ebSJunchao Zhang 
65859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
65869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
65879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
65889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6589394ed5ebSJunchao Zhang 
6590394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6591158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6592158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6593158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6594158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6595394ed5ebSJunchao Zhang 
65969566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
65979566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6598158ec288SJunchao Zhang 
6599158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6600158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6601158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6602158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6603158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6604158ec288SJunchao Zhang 
6605158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6606158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6607158ec288SJunchao Zhang 
6608158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6609158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6610158ec288SJunchao Zhang 
6611158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6612158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6613158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6614158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66159566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66169566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6617e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66189566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6619394ed5ebSJunchao Zhang 
6620158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6621158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6622158ec288SJunchao Zhang 
6623394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6624394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6625394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66269566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66279566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66289566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6629394ed5ebSJunchao Zhang     Aj = Aj_new;
6630394ed5ebSJunchao Zhang   }
6631394ed5ebSJunchao Zhang 
6632394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6633394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66349566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66359566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66369566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6637394ed5ebSJunchao Zhang     Bj = Bj_new;
6638394ed5ebSJunchao Zhang   }
6639394ed5ebSJunchao Zhang 
6640cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6641394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6642cbc6b225SStefano Zampini   MatType          rtype;
6643394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6644cf8ba265SJunchao Zhang   PetscObjectState state;
66459566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
66469566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6647394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
66489371c9d4SSatish Balay   if (cstart) {
66499371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
66509371c9d4SSatish Balay   }
6651c508b908SBarry Smith 
66529566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6653c508b908SBarry Smith 
6654c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6655c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
66569566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
66570da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6658c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6659c508b908SBarry Smith 
6660c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6661c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
66629566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
66630da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6664c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6665c508b908SBarry Smith 
66669566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
66675bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6668cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6669462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6670cbc6b225SStefano Zampini 
6671394ed5ebSJunchao Zhang   a          = (Mat_SeqAIJ *)mpiaij->A->data;
6672394ed5ebSJunchao Zhang   b          = (Mat_SeqAIJ *)mpiaij->B->data;
66739f0612e4SBarry Smith   a->free_a  = PETSC_TRUE;
66749f0612e4SBarry Smith   a->free_ij = PETSC_TRUE;
66759f0612e4SBarry Smith   b->free_a  = PETSC_TRUE;
66769f0612e4SBarry Smith   b->free_ij = PETSC_TRUE;
667717b874c6SStefano Zampini   a->maxnz   = a->nz;
667817b874c6SStefano Zampini   b->maxnz   = b->nz;
6679394ed5ebSJunchao Zhang 
6680cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
66819566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
66829566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
66839566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
66849566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6685cbc6b225SStefano Zampini 
66862c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
66872c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
66882c4ab24aSJunchao Zhang   coo->n       = coo_n;
66892c4ab24aSJunchao Zhang   coo->sf      = sf2;
66902c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
66912c4ab24aSJunchao Zhang   coo->recvlen = nroots;
66922c4ab24aSJunchao Zhang   coo->Annz    = Annz;
66932c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
66942c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
66952c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
66962c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
66972c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
66982c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
66992c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67002c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67012c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67022c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67032c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67042c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67052c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67062c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67072c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67082c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67092c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67102c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67112c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67122c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67132c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67142c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
671549abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ));
67162c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67172c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6719394ed5ebSJunchao Zhang }
6720394ed5ebSJunchao Zhang 
6721d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6722d71ae5a4SJacob Faibussowitsch {
6723394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6724394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6725394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67262c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67272c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67282c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67292c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67302c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67312c4ab24aSJunchao Zhang   PetscContainer       container;
67322c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6733394ed5ebSJunchao Zhang 
6734394ed5ebSJunchao Zhang   PetscFunctionBegin;
67352c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67362c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67372c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67382c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67392c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67402c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67412c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67422c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67432c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67442c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67452c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
67462c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
67472c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
67482c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
67492c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
67502c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
67512c4ab24aSJunchao Zhang 
67529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
67539566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6754394ed5ebSJunchao Zhang 
6755394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
67562c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6757394ed5ebSJunchao Zhang 
6758394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
67592c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6760394ed5ebSJunchao Zhang   /* Add local entries to A and B */
67612c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6762da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6763158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6764158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6765394ed5ebSJunchao Zhang   }
67662c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6767158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6768158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6769158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6770394ed5ebSJunchao Zhang   }
67712c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6772394ed5ebSJunchao Zhang 
6773394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
67742c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6775394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6776394ed5ebSJunchao Zhang   }
67772c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6778394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6779394ed5ebSJunchao Zhang   }
67809566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
67819566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
67823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6783394ed5ebSJunchao Zhang }
6784394ed5ebSJunchao Zhang 
6785ccd8e176SBarry Smith /*MC
6786ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6787ccd8e176SBarry Smith 
6788ccd8e176SBarry Smith    Options Database Keys:
678911a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6790ccd8e176SBarry Smith 
6791ccd8e176SBarry Smith    Level: beginner
67920cd7f59aSBarry Smith 
67930cd7f59aSBarry Smith    Notes:
67942ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
67950cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
67960cd7f59aSBarry Smith     in the matrix
67970cd7f59aSBarry Smith 
679811a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
679911a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6800ccd8e176SBarry Smith 
68011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6802ccd8e176SBarry Smith M*/
6803d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6804d71ae5a4SJacob Faibussowitsch {
6805ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6806ccd8e176SBarry Smith   PetscMPIInt size;
6807ccd8e176SBarry Smith 
6808ccd8e176SBarry Smith   PetscFunctionBegin;
68099566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68102205254eSKarl Rupp 
68114dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6812ccd8e176SBarry Smith   B->data       = (void *)b;
6813aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6814ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6815ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6816ccd8e176SBarry Smith   b->size       = size;
68172205254eSKarl Rupp 
68189566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6819ccd8e176SBarry Smith 
6820ccd8e176SBarry Smith   /* build cache for off array entries formed */
68219566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68222205254eSKarl Rupp 
6823ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6824f4259b30SLisandro Dalcin   b->colmap      = NULL;
6825f4259b30SLisandro Dalcin   b->garray      = NULL;
6826ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6827ccd8e176SBarry Smith 
6828ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68290298fd71SBarry Smith   b->lvec  = NULL;
68300298fd71SBarry Smith   b->Mvctx = NULL;
6831ccd8e176SBarry Smith 
6832ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6833f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6834f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6835ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6836ccd8e176SBarry Smith 
6837f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68380298fd71SBarry Smith   b->spptr = NULL;
6839f60c3dc2SHong Zhang 
68409566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68419566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68429566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68439566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68449566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
6846674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ));
68479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
68489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
68499566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
68509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
68513d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
68529566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
68533d0639e7SStefano Zampini #endif
6854d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6855d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6856d5e393b6SSuyash Tandon #endif
68573d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
68589566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
68593d0639e7SStefano Zampini #endif
68609779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
68619566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6862191b95cbSRichard Tran Mills #endif
68639566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
68649566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
68659566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
68669566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
68675d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68689566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
68695d7652ecSHong Zhang #endif
6870d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
68719566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6872d24d4204SJose E. Roman #endif
68739566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
68749566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
68753dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
68769566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
68779566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
68783dad0653Sstefano_zampini #endif
68799566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
68809566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
68819566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
68829566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
68839566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
68843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6885ccd8e176SBarry Smith }
688681824310SBarry Smith 
68875d83a8b1SBarry Smith /*@
688811a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
688903bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
689003bfb495SBarry Smith 
6891d083f849SBarry Smith   Collective
689203bfb495SBarry Smith 
689303bfb495SBarry Smith   Input Parameters:
689403bfb495SBarry Smith + comm - MPI communicator
689511a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
689603bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6897d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
68982ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
68992ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69002ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6901483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
690204ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
690303bfb495SBarry Smith . a    - matrix values
6904483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69052ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
690603bfb495SBarry Smith - oa   - matrix values
690703bfb495SBarry Smith 
690803bfb495SBarry Smith   Output Parameter:
690903bfb495SBarry Smith . mat - the matrix
691003bfb495SBarry Smith 
691103bfb495SBarry Smith   Level: advanced
691203bfb495SBarry Smith 
691303bfb495SBarry Smith   Notes:
6914f13dfd9eSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user
6915292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
691603bfb495SBarry Smith 
69172ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
691803bfb495SBarry Smith 
69192ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
692003bfb495SBarry Smith 
69217b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69227b55108eSBarry Smith 
6923dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6924dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6925dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6926dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
692711a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6928dca341c0SJed Brown   communication if it is known that only local entries will be set.
692903bfb495SBarry Smith 
69301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6931db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69322b26979fSBarry Smith @*/
6933d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6934d71ae5a4SJacob Faibussowitsch {
693503bfb495SBarry Smith   Mat_MPIAIJ *maij;
693603bfb495SBarry Smith 
693703bfb495SBarry Smith   PetscFunctionBegin;
693808401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6939aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6940aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69419566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69429566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69439566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
694403bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69452205254eSKarl Rupp 
69468d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
694703bfb495SBarry Smith 
69489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
69499566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
695003bfb495SBarry Smith 
69519566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
69529566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
695303bfb495SBarry Smith 
69549566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
69559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
69569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
69579566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
69589566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
69593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
696003bfb495SBarry Smith }
696103bfb495SBarry Smith 
69624e84afc0SStefano Zampini typedef struct {
69634e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
69644e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
69654e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
69664e84afc0SStefano Zampini 
69674e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
69684e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
69694e84afc0SStefano Zampini   PetscScalar *bufa;
69704e84afc0SStefano Zampini   Mat          P_oth;
69714e84afc0SStefano Zampini 
69724e84afc0SStefano Zampini   /* may take advantage of merging product->B */
6973ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
69744e84afc0SStefano Zampini 
6975ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
69764e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
69774e84afc0SStefano Zampini      of the temporary storage */
69784e84afc0SStefano Zampini   PetscBool reusesym;
69794e84afc0SStefano Zampini 
69804e84afc0SStefano Zampini   /* support for COO values insertion */
6981ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
6982ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
6983ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
6984ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
6985c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
6986c215019aSStefano Zampini   PetscMemType mtype;
69874e84afc0SStefano Zampini 
69884e84afc0SStefano Zampini   /* customization */
69894e84afc0SStefano Zampini   PetscBool abmerge;
6990abb89eb1SStefano Zampini   PetscBool P_oth_bind;
69914e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
69924e84afc0SStefano Zampini 
6993ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
6994d71ae5a4SJacob Faibussowitsch {
69954e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
69964e84afc0SStefano Zampini   PetscInt             i;
69974e84afc0SStefano Zampini 
69984e84afc0SStefano Zampini   PetscFunctionBegin;
69999566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70009566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70019566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70029566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70039566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70049566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70059566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
700648a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70079566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70089566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70099566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70109566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70119566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70129566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70144e84afc0SStefano Zampini }
70154e84afc0SStefano Zampini 
7016fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7017fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7018fff043a9SJunchao Zhang  */
7019d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7020d71ae5a4SJacob Faibussowitsch {
7021c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7022c215019aSStefano Zampini 
7023c215019aSStefano Zampini   PetscFunctionBegin;
70249566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7025c215019aSStefano Zampini   if (f) {
70269566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7027c215019aSStefano Zampini   } else {
7028c215019aSStefano Zampini     const PetscScalar *vv;
7029c215019aSStefano Zampini 
70309566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7031c215019aSStefano Zampini     if (n && idx) {
7032c215019aSStefano Zampini       PetscScalar    *w  = v;
7033c215019aSStefano Zampini       const PetscInt *oi = idx;
7034c215019aSStefano Zampini       PetscInt        j;
7035c215019aSStefano Zampini 
7036c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7037c215019aSStefano Zampini     } else {
70389566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7039c215019aSStefano Zampini     }
70409566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7041c215019aSStefano Zampini   }
70423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7043c215019aSStefano Zampini }
7044c215019aSStefano Zampini 
7045d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7046d71ae5a4SJacob Faibussowitsch {
70474e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
70484e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
70494e84afc0SStefano Zampini 
70504e84afc0SStefano Zampini   PetscFunctionBegin;
70514e84afc0SStefano Zampini   MatCheckProduct(C, 1);
705228b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
70534e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
70544e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
705548a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
705648a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
70574e84afc0SStefano Zampini   }
70584e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7059abb89eb1SStefano Zampini 
7060abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
706108401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
70629566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7063abb89eb1SStefano Zampini   }
70644e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
70656497c311SBarry Smith     PetscInt noff;
70664e84afc0SStefano Zampini 
70676497c311SBarry Smith     PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff));
70684e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
70694e84afc0SStefano Zampini     if (noff) {
70706497c311SBarry Smith       PetscInt nown;
7071c215019aSStefano Zampini 
70726497c311SBarry Smith       PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown));
70739566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
70749566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
70754e84afc0SStefano Zampini       n_o += noff;
70764e84afc0SStefano Zampini       n_d += nown;
70774e84afc0SStefano Zampini     } else {
7078c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7079c215019aSStefano Zampini 
70809566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
70814e84afc0SStefano Zampini       n_d += mm->nz;
70824e84afc0SStefano Zampini     }
70834e84afc0SStefano Zampini   }
7084c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
70859566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
70869566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
70874e84afc0SStefano Zampini   }
70889566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
70893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70904e84afc0SStefano Zampini }
70914e84afc0SStefano Zampini 
70924e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
70934e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7094d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7095d71ae5a4SJacob Faibussowitsch {
70964e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7097ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
70984e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
70994e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71004e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71014e84afc0SStefano Zampini   IS                     glob      = NULL;
71024e84afc0SStefano Zampini   const char            *prefix;
71034e84afc0SStefano Zampini   char                   pprefix[256];
71044e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
710582a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
710682a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7107ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7108ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7109ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7110ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7111ddea5d60SJunchao Zhang 
71124e84afc0SStefano Zampini   MatProductType ptype;
7113d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71144e84afc0SStefano Zampini   PetscMPIInt    size;
71154e84afc0SStefano Zampini 
71164e84afc0SStefano Zampini   PetscFunctionBegin;
71174e84afc0SStefano Zampini   MatCheckProduct(C, 1);
711828b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71194e84afc0SStefano Zampini   ptype = product->type;
7120b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7121fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7122fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7123fa046f9fSJunchao Zhang   }
71244e84afc0SStefano Zampini   switch (ptype) {
71254e84afc0SStefano Zampini   case MATPRODUCT_AB:
71264e84afc0SStefano Zampini     A          = product->A;
71274e84afc0SStefano Zampini     P          = product->B;
71284e84afc0SStefano Zampini     m          = A->rmap->n;
71294e84afc0SStefano Zampini     n          = P->cmap->n;
71304e84afc0SStefano Zampini     M          = A->rmap->N;
71314e84afc0SStefano Zampini     N          = P->cmap->N;
7132ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71334e84afc0SStefano Zampini     break;
71344e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71354e84afc0SStefano Zampini     P          = product->A;
71364e84afc0SStefano Zampini     A          = product->B;
71374e84afc0SStefano Zampini     m          = P->cmap->n;
71384e84afc0SStefano Zampini     n          = A->cmap->n;
71394e84afc0SStefano Zampini     M          = P->cmap->N;
71404e84afc0SStefano Zampini     N          = A->cmap->N;
71414e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71424e84afc0SStefano Zampini     break;
71434e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71444e84afc0SStefano Zampini     A          = product->A;
71454e84afc0SStefano Zampini     P          = product->B;
71464e84afc0SStefano Zampini     m          = P->cmap->n;
71474e84afc0SStefano Zampini     n          = P->cmap->n;
71484e84afc0SStefano Zampini     M          = P->cmap->N;
71494e84afc0SStefano Zampini     N          = P->cmap->N;
71504e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71514e84afc0SStefano Zampini     break;
7152d71ae5a4SJacob Faibussowitsch   default:
7153d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
71544e84afc0SStefano Zampini   }
71559566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
71564e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
71574e84afc0SStefano Zampini 
71584e84afc0SStefano Zampini   /* defaults */
71594e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
71604e84afc0SStefano Zampini     mp[i]    = NULL;
71614e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
71624e84afc0SStefano Zampini     rmapt[i] = -1;
71634e84afc0SStefano Zampini     cmapt[i] = -1;
71644e84afc0SStefano Zampini     rmapa[i] = NULL;
71654e84afc0SStefano Zampini     cmapa[i] = NULL;
71664e84afc0SStefano Zampini   }
71674e84afc0SStefano Zampini 
71684e84afc0SStefano Zampini   /* customization */
71699566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
71704e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
71714e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
71724e84afc0SStefano Zampini     if (product->api_user) {
7173d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
71749566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
71759566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7176d0609cedSBarry Smith       PetscOptionsEnd();
71774e84afc0SStefano Zampini     } else {
7178d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
71799566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
71809566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7181d0609cedSBarry Smith       PetscOptionsEnd();
7182abb89eb1SStefano Zampini     }
7183abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7184abb89eb1SStefano Zampini     if (product->api_user) {
7185d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
71869566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7187d0609cedSBarry Smith       PetscOptionsEnd();
7188abb89eb1SStefano Zampini     } else {
7189d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
71909566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7191d0609cedSBarry Smith       PetscOptionsEnd();
71924e84afc0SStefano Zampini     }
71934e84afc0SStefano Zampini   }
71944e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
71954e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
71969566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
71979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
71989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
71999566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72009566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7201ddea5d60SJunchao Zhang 
7202ddea5d60SJunchao Zhang   cp = 0;
72034e84afc0SStefano Zampini   switch (ptype) {
72044e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72059566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72064e84afc0SStefano Zampini 
7207ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7208ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72094e84afc0SStefano Zampini       /* P is product->B */
72109566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72119566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72129566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72139566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72149566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72159566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72169566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72174e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72189566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72199566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72209566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72214e84afc0SStefano Zampini       rmapt[cp] = 1;
72224e84afc0SStefano Zampini       cmapt[cp] = 2;
72234e84afc0SStefano Zampini       cmapa[cp] = globidx;
72244e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72254e84afc0SStefano Zampini       cp++;
7226ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72279566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72289566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72299566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72309566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72319566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72329566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72334e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72349566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72359566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72364e84afc0SStefano Zampini       rmapt[cp] = 1;
72374e84afc0SStefano Zampini       cmapt[cp] = 1;
72384e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72394e84afc0SStefano Zampini       cp++;
72409566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72419566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72429566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72439566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72449566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72459566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72464e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72479566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72489566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72494e84afc0SStefano Zampini       rmapt[cp] = 1;
72504e84afc0SStefano Zampini       cmapt[cp] = 2;
72514e84afc0SStefano Zampini       cmapa[cp] = p->garray;
72524e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72534e84afc0SStefano Zampini       cp++;
72544e84afc0SStefano Zampini     }
7255ddea5d60SJunchao Zhang 
7256ddea5d60SJunchao Zhang     /* A_off * P_other */
72574e84afc0SStefano Zampini     if (mmdata->P_oth) {
72589566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
72599566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7260f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
72619566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
72629566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
72639566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72649566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72659566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72669566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72679566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72684e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72699566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72709566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72714e84afc0SStefano Zampini       rmapt[cp] = 1;
72724e84afc0SStefano Zampini       cmapt[cp] = 2;
72734e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
72744e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72754e84afc0SStefano Zampini       cp++;
72764e84afc0SStefano Zampini     }
72774e84afc0SStefano Zampini     break;
7278ddea5d60SJunchao Zhang 
72794e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
72804e84afc0SStefano Zampini     /* A is product->B */
72819566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7282ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
72839566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
72849566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
72859566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72869566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72879566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72889566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72894e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72909566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72919566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72929566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72934e84afc0SStefano Zampini       rmapt[cp] = 2;
72944e84afc0SStefano Zampini       rmapa[cp] = globidx;
72954e84afc0SStefano Zampini       cmapt[cp] = 2;
72964e84afc0SStefano Zampini       cmapa[cp] = globidx;
72974e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72984e84afc0SStefano Zampini       cp++;
72994e84afc0SStefano Zampini     } else {
73009566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73019566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73029566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73039566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73049566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73059566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73064e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73079566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73089566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73099566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73104e84afc0SStefano Zampini       rmapt[cp] = 1;
73114e84afc0SStefano Zampini       cmapt[cp] = 2;
73124e84afc0SStefano Zampini       cmapa[cp] = globidx;
73134e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73144e84afc0SStefano Zampini       cp++;
73159566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73169566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73179566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73189566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73199566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73209566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73214e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73229566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73239566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73244e84afc0SStefano Zampini       rmapt[cp] = 2;
73254e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73264e84afc0SStefano Zampini       cmapt[cp] = 2;
73274e84afc0SStefano Zampini       cmapa[cp] = globidx;
73284e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73294e84afc0SStefano Zampini       cp++;
73304e84afc0SStefano Zampini     }
73314e84afc0SStefano Zampini     break;
73324e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73339566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73344e84afc0SStefano Zampini     /* P is product->B */
73359566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73369566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73379566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73389566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73399566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73409566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73419566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73424e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73439566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73449566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73459566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73464e84afc0SStefano Zampini     rmapt[cp] = 2;
73474e84afc0SStefano Zampini     rmapa[cp] = globidx;
73484e84afc0SStefano Zampini     cmapt[cp] = 2;
73494e84afc0SStefano Zampini     cmapa[cp] = globidx;
73504e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
73514e84afc0SStefano Zampini     cp++;
73524e84afc0SStefano Zampini     if (mmdata->P_oth) {
73539566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
73549566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7355f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73569566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73579566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73589566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73599566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73609566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73619566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73629566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73634e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73649566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73659566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73664e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
73674e84afc0SStefano Zampini       cp++;
73689566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
73699566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73709566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73719566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73729566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73739566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73744e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73759566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73769566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73774e84afc0SStefano Zampini       rmapt[cp] = 2;
73784e84afc0SStefano Zampini       rmapa[cp] = globidx;
73794e84afc0SStefano Zampini       cmapt[cp] = 2;
73804e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73814e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73824e84afc0SStefano Zampini       cp++;
73834e84afc0SStefano Zampini     }
73844e84afc0SStefano Zampini     break;
7385d71ae5a4SJacob Faibussowitsch   default:
7386d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
73874e84afc0SStefano Zampini   }
73884e84afc0SStefano Zampini   /* sanity check */
73899371c9d4SSatish Balay   if (size > 1)
73909371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
73914e84afc0SStefano Zampini 
73929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7393ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7394ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7395ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7396ddea5d60SJunchao Zhang   }
73974e84afc0SStefano Zampini   mmdata->cp             = cp;
73984e84afc0SStefano Zampini   C->product->data       = mmdata;
73994e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74004e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74014e84afc0SStefano Zampini 
7402c215019aSStefano Zampini   /* memory type */
7403c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74049566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7405d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74069566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7407c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7408d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74093214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7410c215019aSStefano Zampini 
74114e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7412ddea5d60SJunchao Zhang 
7413ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7414ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7415ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7416ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7417ddea5d60SJunchao Zhang   */
74184e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74194e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74204e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7421ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74224e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74234e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74244e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74254e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74264e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74274e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74284e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74294e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7430ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7431ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74324e84afc0SStefano Zampini       }
74334e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74344e84afc0SStefano Zampini   }
7435ddea5d60SJunchao Zhang 
7436ddea5d60SJunchao Zhang   /*
7437ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7438ddea5d60SJunchao Zhang 
7439ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7440ddea5d60SJunchao Zhang 
7441d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7442ddea5d60SJunchao Zhang 
7443ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7444ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7445ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7446ddea5d60SJunchao Zhang 
7447ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7448da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7449ddea5d60SJunchao Zhang   */
74509566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
74519566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7452ddea5d60SJunchao Zhang 
7453ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7454ddea5d60SJunchao Zhang   if (hasoffproc) {
74554e84afc0SStefano Zampini     PetscSF  msf;
74564e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
74574e84afc0SStefano Zampini 
74589566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
74599566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
74609566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7461ddea5d60SJunchao Zhang 
74624e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
74634e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
74644e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
74654e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7466ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
74674e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
74684e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
74694e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
74704e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
74714e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
74724e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
74734e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
74744e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
74754e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
74764e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
74774e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
74784e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
74794e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7480ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
74814e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
74824e84afc0SStefano Zampini               *coi++    = gr;
74834e84afc0SStefano Zampini               *idxoff++ = j;
74844e84afc0SStefano Zampini             }
74854e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
74864e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
74874e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
74884e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
74894e84afc0SStefano Zampini             } else { /* offdiag */
74904e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
74914e84afc0SStefano Zampini             }
74924e84afc0SStefano Zampini             ncoo_o += nz;
7493ddea5d60SJunchao Zhang           } else { /* this is a local row */
74944e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
74954e84afc0SStefano Zampini           }
74964e84afc0SStefano Zampini         }
74974e84afc0SStefano Zampini       }
74984e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
74994e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75004e84afc0SStefano Zampini     }
75014e84afc0SStefano Zampini 
75029566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75036497c311SBarry Smith     PetscInt incoo_o;
75046497c311SBarry Smith     PetscCall(PetscIntCast(ncoo_o, &incoo_o));
75056497c311SBarry Smith     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75069566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75079566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75084e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75099566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75109566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75119566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75129566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75139566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75149566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7515ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75169566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75174e84afc0SStefano Zampini     coo_i = coo_i2;
75184e84afc0SStefano Zampini     coo_j = coo_j2;
75194e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75204e84afc0SStefano Zampini     ncoo = ncoo_d;
75219566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7522c215019aSStefano Zampini 
75239566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75249566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75259566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75264e84afc0SStefano Zampini   }
7527c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75284e84afc0SStefano Zampini 
7529ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75304e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75314e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75324e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75334e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75344e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75354e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75364e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75374e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75384e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75394e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75404e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75414e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75424e84afc0SStefano Zampini 
75434e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7544ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7545ddea5d60SJunchao Zhang       /* fill coo_i */
75464e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75474e84afc0SStefano Zampini         const PetscInt gr = i + rs;
75484e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
75494e84afc0SStefano Zampini       }
7550ddea5d60SJunchao Zhang       /* fill coo_j */
7551ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
75529566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7553ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7554ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7555ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
75564e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
75574e84afc0SStefano Zampini       }
75584e84afc0SStefano Zampini       ncoo_d += mm->nz;
7559ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
75604e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75614e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
75624e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
75634e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7564ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
75654e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7566ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
75674e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
75684e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75694e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7570ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
75714e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75724e84afc0SStefano Zampini           }
75734e84afc0SStefano Zampini           ncoo_d += nz;
75744e84afc0SStefano Zampini         }
75754e84afc0SStefano Zampini       }
75764e84afc0SStefano Zampini     }
75774e84afc0SStefano Zampini   }
757848a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
75799566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
758048a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
75819566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7582ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
75839566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
75844e84afc0SStefano Zampini 
758539cfb508SMark Adams   /* set block sizes */
758639cfb508SMark Adams   A = product->A;
758739cfb508SMark Adams   P = product->B;
758839cfb508SMark Adams   switch (ptype) {
758939cfb508SMark Adams   case MATPRODUCT_PtAP:
759058b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs));
759139cfb508SMark Adams     break;
759239cfb508SMark Adams   case MATPRODUCT_RARt:
759358b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs));
759439cfb508SMark Adams     break;
759539cfb508SMark Adams   case MATPRODUCT_ABC:
759639cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, product->C));
759739cfb508SMark Adams     break;
759839cfb508SMark Adams   case MATPRODUCT_AB:
759939cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, P));
760039cfb508SMark Adams     break;
760139cfb508SMark Adams   case MATPRODUCT_AtB:
760258b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs));
760339cfb508SMark Adams     break;
760439cfb508SMark Adams   case MATPRODUCT_ABt:
760558b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs));
760639cfb508SMark Adams     break;
760739cfb508SMark Adams   default:
760839cfb508SMark Adams     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]);
760939cfb508SMark Adams   }
761039cfb508SMark Adams 
76114e84afc0SStefano Zampini   /* preallocate with COO data */
76129566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76139566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76154e84afc0SStefano Zampini }
76164e84afc0SStefano Zampini 
7617d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7618d71ae5a4SJacob Faibussowitsch {
76194e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76204e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76214e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7622abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76234e84afc0SStefano Zampini #else
76244e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76254e84afc0SStefano Zampini #endif
76264e84afc0SStefano Zampini 
76274e84afc0SStefano Zampini   PetscFunctionBegin;
76284e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76294e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
763048a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
763165e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7632abb89eb1SStefano Zampini     switch (product->type) {
7633abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7634abb89eb1SStefano Zampini       if (product->api_user) {
7635d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76369566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7637d0609cedSBarry Smith         PetscOptionsEnd();
7638abb89eb1SStefano Zampini       } else {
7639d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76409566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7641d0609cedSBarry Smith         PetscOptionsEnd();
7642abb89eb1SStefano Zampini       }
7643abb89eb1SStefano Zampini       break;
7644abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7645abb89eb1SStefano Zampini       if (product->api_user) {
7646d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76479566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7648d0609cedSBarry Smith         PetscOptionsEnd();
7649abb89eb1SStefano Zampini       } else {
7650d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76519566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7652d0609cedSBarry Smith         PetscOptionsEnd();
7653abb89eb1SStefano Zampini       }
7654abb89eb1SStefano Zampini       break;
7655abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7656abb89eb1SStefano Zampini       if (product->api_user) {
7657d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76589566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7659d0609cedSBarry Smith         PetscOptionsEnd();
7660abb89eb1SStefano Zampini       } else {
7661d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76629566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7663d0609cedSBarry Smith         PetscOptionsEnd();
7664abb89eb1SStefano Zampini       }
7665abb89eb1SStefano Zampini       break;
7666d71ae5a4SJacob Faibussowitsch     default:
7667d71ae5a4SJacob Faibussowitsch       break;
7668abb89eb1SStefano Zampini     }
7669abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7670abb89eb1SStefano Zampini   }
76714e84afc0SStefano Zampini #endif
76724e84afc0SStefano Zampini   if (match) {
76734e84afc0SStefano Zampini     switch (product->type) {
76744e84afc0SStefano Zampini     case MATPRODUCT_AB:
76754e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7676d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7677d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7678d71ae5a4SJacob Faibussowitsch       break;
7679d71ae5a4SJacob Faibussowitsch     default:
7680d71ae5a4SJacob Faibussowitsch       break;
76814e84afc0SStefano Zampini     }
76824e84afc0SStefano Zampini   }
76834e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
76849566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
76853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
768681824310SBarry Smith }
768798921bdaSJacob Faibussowitsch 
768898921bdaSJacob Faibussowitsch /*
768972833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
769072833a62Smarkadams4 
769172833a62Smarkadams4    n - the number of block indices in cc[]
769272833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
769372833a62Smarkadams4 */
7694d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7695d71ae5a4SJacob Faibussowitsch {
769672833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
769772833a62Smarkadams4   const PetscInt *idx;
769872833a62Smarkadams4 
769972833a62Smarkadams4   PetscFunctionBegin;
770072833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
770172833a62Smarkadams4   if (nidx) {
770272833a62Smarkadams4     cnt     = 0;
770372833a62Smarkadams4     cc[cnt] = idx[0] / bs;
770472833a62Smarkadams4     for (j = 1; j < nidx; j++) {
770572833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
770672833a62Smarkadams4     }
770772833a62Smarkadams4   }
770872833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
770972833a62Smarkadams4   *n = cnt + 1;
77103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
771172833a62Smarkadams4 }
771272833a62Smarkadams4 
771372833a62Smarkadams4 /*
771472833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
771572833a62Smarkadams4 
771672833a62Smarkadams4     ncollapsed - the number of block indices
771772833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
771872833a62Smarkadams4 */
7719d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7720d71ae5a4SJacob Faibussowitsch {
772172833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
772272833a62Smarkadams4 
772372833a62Smarkadams4   PetscFunctionBegin;
772472833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
772572833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
772672833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
772772833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77289371c9d4SSatish Balay     cprevtmp = cprev;
77299371c9d4SSatish Balay     cprev    = merged;
77309371c9d4SSatish Balay     merged   = cprevtmp;
773172833a62Smarkadams4   }
773272833a62Smarkadams4   *ncollapsed = nprev;
773372833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
773572833a62Smarkadams4 }
773672833a62Smarkadams4 
77372d776b49SBarry Smith /*
773872833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
773972833a62Smarkadams4 
774072833a62Smarkadams4  Input Parameter:
774172833a62Smarkadams4  . Amat - matrix
774272833a62Smarkadams4  - symmetrize - make the result symmetric
774372833a62Smarkadams4  + scale - scale with diagonal
774472833a62Smarkadams4 
774572833a62Smarkadams4  Output Parameter:
774672833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
774772833a62Smarkadams4 
774872833a62Smarkadams4 */
7749e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7750d71ae5a4SJacob Faibussowitsch {
775172833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
775272833a62Smarkadams4   MPI_Comm  comm;
775372833a62Smarkadams4   Mat       Gmat;
775472833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
775572833a62Smarkadams4   Mat       a, b, c;
775672833a62Smarkadams4   MatType   jtype;
775772833a62Smarkadams4 
775872833a62Smarkadams4   PetscFunctionBegin;
775972833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
776072833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
776172833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
776272833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
776372833a62Smarkadams4   nloc = (Iend - Istart) / bs;
776472833a62Smarkadams4 
776572833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
776672833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
776772833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
776872833a62Smarkadams4 
776972833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
777072833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
777172833a62Smarkadams4      implementation */
777272833a62Smarkadams4   if (bs > 1) {
777372833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
777472833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
777572833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
777672833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
777772833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
777872833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
777972833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
77802cf69117Smarkadams4       MatScalar *aa, val, *AA;
77812cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
77826497c311SBarry Smith 
77839371c9d4SSatish Balay       if (isseqaij) {
77849371c9d4SSatish Balay         a = Amat;
77859371c9d4SSatish Balay         b = NULL;
77869371c9d4SSatish Balay       } else {
778772833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
77889371c9d4SSatish Balay         a             = d->A;
77899371c9d4SSatish Balay         b             = d->B;
779072833a62Smarkadams4       }
779172833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
779232603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
779372833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
77942cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
779559ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
77966497c311SBarry Smith 
779759ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
779859ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
779959ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
780059ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
780172833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
780259ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
780359ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
780459ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
780559ee9f9fSPierre Jolivet             else {
780659ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
780759ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
780859ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
780972833a62Smarkadams4               }
781059ee9f9fSPierre Jolivet             }
781159ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
781259ee9f9fSPierre Jolivet           }
781359ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
781472833a62Smarkadams4           if (!ok) {
781572833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
781659ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
781772833a62Smarkadams4             goto old_bs;
781872833a62Smarkadams4           }
781972833a62Smarkadams4         }
782072833a62Smarkadams4       }
782172833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
782272833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
782372833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78242cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
782572833a62Smarkadams4       // diag
782672833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
782772833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
78286497c311SBarry Smith 
782972833a62Smarkadams4         ai = aseq->i;
783072833a62Smarkadams4         n  = ai[brow + 1] - ai[brow];
783172833a62Smarkadams4         aj = aseq->j + ai[brow];
78326497c311SBarry Smith         for (PetscInt k = 0; k < n; k += bs) {   // block columns
783372833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
783472833a62Smarkadams4           val        = 0;
7835e02fb3cdSMark Adams           if (index_size == 0) {
78366497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
783772833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
78386497c311SBarry Smith               for (PetscInt jj = 0; jj < bs; jj++) {    // columns in block
783972833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
784072833a62Smarkadams4               }
784172833a62Smarkadams4             }
7842e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78436497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78446497c311SBarry Smith               PetscInt ii = index[iii];
7845e02fb3cdSMark Adams               aa          = aseq->a + ai[brow + ii] + k;
78466497c311SBarry Smith               for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block
78476497c311SBarry Smith                 PetscInt jj = index[jjj];
7848cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7849e02fb3cdSMark Adams               }
7850e02fb3cdSMark Adams             }
7851e02fb3cdSMark Adams           }
7852835f2295SStefano Zampini           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
785372833a62Smarkadams4           AA[k / bs] = val;
785472833a62Smarkadams4         }
785572833a62Smarkadams4         grow = Istart / bs + brow / bs;
785666521e1fSMark Adams         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES));
785772833a62Smarkadams4       }
785872833a62Smarkadams4       // off-diag
785972833a62Smarkadams4       if (ismpiaij) {
786072833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
786172833a62Smarkadams4         const PetscScalar *vals;
786272833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
78636497c311SBarry Smith 
786472833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
786572833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
786672833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
78676497c311SBarry Smith           for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
786859ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
786972833a62Smarkadams4             AA[k / bs] = 0;
787072833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
787172833a62Smarkadams4           }
787272833a62Smarkadams4           nc = ncols / bs;
787372833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7874e02fb3cdSMark Adams           if (index_size == 0) {
78756497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
787672833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
78776497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
78786497c311SBarry Smith                 for (PetscInt jj = 0; jj < bs; jj++) { // cols in block
7879835f2295SStefano Zampini                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
788072833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
788172833a62Smarkadams4                 }
788272833a62Smarkadams4               }
788372833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
788472833a62Smarkadams4             }
7885e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78866497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78876497c311SBarry Smith               PetscInt ii = index[iii];
7888e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
78896497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
78906497c311SBarry Smith                 for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block
78916497c311SBarry Smith                   PetscInt jj = index[jjj];
7892e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7893e02fb3cdSMark Adams                 }
7894e02fb3cdSMark Adams               }
7895e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7896e02fb3cdSMark Adams             }
7897e02fb3cdSMark Adams           }
789872833a62Smarkadams4           grow = Istart / bs + brow / bs;
789966521e1fSMark Adams           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES));
790072833a62Smarkadams4         }
790172833a62Smarkadams4       }
790272833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
790372833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79042cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
790572833a62Smarkadams4     } else {
790672833a62Smarkadams4       const PetscScalar *vals;
790772833a62Smarkadams4       const PetscInt    *idx;
790872833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
790972833a62Smarkadams4     old_bs:
791072833a62Smarkadams4       /*
791172833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
791272833a62Smarkadams4        */
791372833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
791432603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
791572833a62Smarkadams4       if (isseqaij) {
791672833a62Smarkadams4         PetscInt max_d_nnz;
79176497c311SBarry Smith 
791872833a62Smarkadams4         /*
791972833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
792072833a62Smarkadams4          */
792172833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
792272833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
792372833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
792448a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
792572833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
792672833a62Smarkadams4       } else if (ismpiaij) {
792772833a62Smarkadams4         Mat             Daij, Oaij;
792872833a62Smarkadams4         const PetscInt *garray;
792972833a62Smarkadams4         PetscInt        max_d_nnz;
79306497c311SBarry Smith 
793172833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
793272833a62Smarkadams4         /*
793372833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
793472833a62Smarkadams4          */
793572833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
793672833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
793772833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
793848a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
793972833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
794072833a62Smarkadams4         /*
794172833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
794272833a62Smarkadams4          */
794372833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
794472833a62Smarkadams4           o_nnz[jj] = 0;
794572833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
794672833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
794772833a62Smarkadams4             o_nnz[jj] += ncols;
794872833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
794972833a62Smarkadams4           }
795072833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
795172833a62Smarkadams4         }
795272833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
795372833a62Smarkadams4       /* get scalar copy (norms) of matrix */
795472833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
795572833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
795672833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
795772833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
795872833a62Smarkadams4         PetscInt dest_row = Ii / bs;
79596497c311SBarry Smith 
796072833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
796172833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
796272833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
796372833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
79646497c311SBarry Smith 
796572833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
796672833a62Smarkadams4         }
796772833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
796872833a62Smarkadams4       }
796972833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
797072833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
797172833a62Smarkadams4     }
797272833a62Smarkadams4   } else {
79732d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
79742d776b49SBarry Smith     else {
79752d776b49SBarry Smith       Gmat = Amat;
79762d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
79772d776b49SBarry Smith     }
79789371c9d4SSatish Balay     if (isseqaij) {
79799371c9d4SSatish Balay       a = Gmat;
79809371c9d4SSatish Balay       b = NULL;
79819371c9d4SSatish Balay     } else {
798272833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
79839371c9d4SSatish Balay       a             = d->A;
79849371c9d4SSatish Balay       b             = d->B;
798572833a62Smarkadams4     }
79862d776b49SBarry Smith     if (filter >= 0 || scale) {
79872d776b49SBarry Smith       /* take absolute value of each entry */
798872833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
798972833a62Smarkadams4         MatInfo      info;
799072833a62Smarkadams4         PetscScalar *avals;
79916497c311SBarry Smith 
799272833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
799372833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
799472833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
799572833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
799672833a62Smarkadams4       }
799772833a62Smarkadams4     }
79982d776b49SBarry Smith   }
799972833a62Smarkadams4   if (symmetrize) {
8000b94d7dedSBarry Smith     PetscBool isset, issym;
80016497c311SBarry Smith 
8002b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
8003b94d7dedSBarry Smith     if (!isset || !issym) {
800472833a62Smarkadams4       Mat matTrans;
80056497c311SBarry Smith 
800672833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
80071fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
800872833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
800972833a62Smarkadams4     }
801072833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80112d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
801272833a62Smarkadams4   if (scale) {
801372833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
801472833a62Smarkadams4     Vec diag;
80156497c311SBarry Smith 
801672833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
801772833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
801872833a62Smarkadams4     PetscCall(VecReciprocal(diag));
801972833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
802072833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
802172833a62Smarkadams4     PetscCall(VecDestroy(&diag));
802272833a62Smarkadams4   }
802372833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80242d776b49SBarry Smith   if (filter >= 0) {
80252ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80262ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80272d776b49SBarry Smith   }
802872833a62Smarkadams4   *a_Gmat = Gmat;
80293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
803072833a62Smarkadams4 }
803172833a62Smarkadams4 
803272833a62Smarkadams4 /*
803398921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
803498921bdaSJacob Faibussowitsch */
803598921bdaSJacob Faibussowitsch 
803698921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80379566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80389566063dSJacob Faibussowitsch #undef PetscCall
80399371c9d4SSatish Balay #define PetscCall(...) \
80409371c9d4SSatish Balay   do { \
80415f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
804298921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
804398921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
804498921bdaSJacob Faibussowitsch       return; \
804598921bdaSJacob Faibussowitsch     } \
804698921bdaSJacob Faibussowitsch   } while (0)
804798921bdaSJacob Faibussowitsch 
804898921bdaSJacob Faibussowitsch #undef SETERRQ
80499371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80509371c9d4SSatish Balay   do { \
805198921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
805298921bdaSJacob Faibussowitsch     return; \
805398921bdaSJacob Faibussowitsch   } while (0)
805498921bdaSJacob Faibussowitsch 
805598921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
805698921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
805798921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
805898921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
805998921bdaSJacob Faibussowitsch #else
806098921bdaSJacob Faibussowitsch #endif
8061d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8062d71ae5a4SJacob Faibussowitsch {
806398921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
806498921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
806598921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
806698921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
806798921bdaSJacob Faibussowitsch   PetscScalar value;
806898921bdaSJacob Faibussowitsch 
806998921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
807098921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80715f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
807298921bdaSJacob Faibussowitsch   {
807398921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
807498921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
807598921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
807698921bdaSJacob Faibussowitsch 
807798921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
807898921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
807998921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
808098921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
808198921bdaSJacob Faibussowitsch     MatScalar  *aa;
8082f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
808398921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
808498921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
808598921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
808698921bdaSJacob Faibussowitsch     MatScalar  *ba;
808798921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
808898921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
808998921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
809098921bdaSJacob Faibussowitsch 
809198921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
809298921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
809398921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
809498921bdaSJacob Faibussowitsch 
809598921bdaSJacob Faibussowitsch     PetscFunctionBegin;
80969566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
80979566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
809898921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
809998921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
81006bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
810198921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
810298921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
810398921bdaSJacob Faibussowitsch         lastcol1 = -1;
810498921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
810598921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
810698921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
810798921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
810898921bdaSJacob Faibussowitsch         low1     = 0;
810998921bdaSJacob Faibussowitsch         high1    = nrow1;
811098921bdaSJacob Faibussowitsch         lastcol2 = -1;
811198921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
811298921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
811398921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
811498921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
811598921bdaSJacob Faibussowitsch         low2     = 0;
811698921bdaSJacob Faibussowitsch         high2    = nrow2;
811798921bdaSJacob Faibussowitsch 
811898921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
811998921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
812098921bdaSJacob Faibussowitsch           else value = v[i + j * m];
812198921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
812298921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
812398921bdaSJacob Faibussowitsch             col = in[j] - cstart;
812498921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
812598921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
812698921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
812763a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
812898921bdaSJacob Faibussowitsch           } else {
812998921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
813048a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
813198921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8132eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
813398921bdaSJacob Faibussowitsch               col--;
813498921bdaSJacob Faibussowitsch #else
813598921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
813698921bdaSJacob Faibussowitsch #endif
8137f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
8138eb14dd14SAlex Lindsay                 PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
813998921bdaSJacob Faibussowitsch                 col = in[j];
814098921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
814198921bdaSJacob Faibussowitsch                 B        = aij->B;
814298921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81439371c9d4SSatish Balay                 bimax    = b->imax;
81449371c9d4SSatish Balay                 bi       = b->i;
81459371c9d4SSatish Balay                 bilen    = b->ilen;
81469371c9d4SSatish Balay                 bj       = b->j;
814798921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
814898921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
814998921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
815098921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
815198921bdaSJacob Faibussowitsch                 low2     = 0;
815298921bdaSJacob Faibussowitsch                 high2    = nrow2;
815398921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
815498921bdaSJacob Faibussowitsch                 ba       = b->a;
815598921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
815698921bdaSJacob Faibussowitsch               }
815798921bdaSJacob Faibussowitsch             } else col = in[j];
815898921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
815998921bdaSJacob Faibussowitsch           }
816098921bdaSJacob Faibussowitsch         }
816198921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
816298921bdaSJacob Faibussowitsch         if (roworiented) {
81639566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
816498921bdaSJacob Faibussowitsch         } else {
81659566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
816698921bdaSJacob Faibussowitsch         }
816798921bdaSJacob Faibussowitsch       }
816898921bdaSJacob Faibussowitsch     }
81699566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81709566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
817198921bdaSJacob Faibussowitsch   }
817298921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
817398921bdaSJacob Faibussowitsch }
817472833a62Smarkadams4 
817598921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
817698921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
817798921bdaSJacob Faibussowitsch  * original definitions */
81789566063dSJacob Faibussowitsch #undef PetscCall
817998921bdaSJacob Faibussowitsch #undef SETERRQ
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