xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision fa852ad4160aa9fc8cfb27b62b416f1dcdc65fb2)
1b57c8cebSBarry Smith 
2a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER
3*fa852ad4SSatish Balay static char vcid[] = "$Id: mpiaij.c,v 1.251 1998/06/19 15:56:02 bsmith Exp balay $";
4cb512458SBarry Smith #endif
58a729477SBarry Smith 
63369ce9aSBarry Smith #include "pinclude/pviewer.h"
770f55243SBarry Smith #include "src/mat/impls/aij/mpi/mpiaij.h"
8f5eb4b81SSatish Balay #include "src/vec/vecimpl.h"
9d9942c19SSatish Balay #include "src/inline/spops.h"
108a729477SBarry Smith 
119e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column
129e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
139e25ed09SBarry Smith storage of the matrix.  This is done in a non scable way since the
149e25ed09SBarry Smith length of colmap equals the global matrix length.
159e25ed09SBarry Smith */
165615d1e5SSatish Balay #undef __FUNC__
17d4bb536fSBarry Smith #define __FUNC__ "CreateColmap_MPIAIJ_Private"
180a198c4cSBarry Smith int CreateColmap_MPIAIJ_Private(Mat mat)
199e25ed09SBarry Smith {
2044a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
21ec8511deSBarry Smith   Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data;
22905e6a2fSBarry Smith   int        n = B->n,i;
23dbb450caSBarry Smith 
243a40ed3dSBarry Smith   PetscFunctionBegin;
25758f045eSSatish Balay   aij->colmap = (int *) PetscMalloc((aij->N+1)*sizeof(int));CHKPTRQ(aij->colmap);
26464493b3SBarry Smith   PLogObjectMemory(mat,aij->N*sizeof(int));
27cddf8d76SBarry Smith   PetscMemzero(aij->colmap,aij->N*sizeof(int));
28905e6a2fSBarry Smith   for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i+1;
293a40ed3dSBarry Smith   PetscFunctionReturn(0);
309e25ed09SBarry Smith }
319e25ed09SBarry Smith 
322493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat);
332493cbb0SBarry Smith 
340520107fSSatish Balay #define CHUNKSIZE   15
3530770e4dSSatish Balay #define MatSetValues_SeqAIJ_A_Private(row,col,value,addv) \
360520107fSSatish Balay { \
370520107fSSatish Balay  \
380520107fSSatish Balay     rp   = aj + ai[row] + shift; ap = aa + ai[row] + shift; \
3930770e4dSSatish Balay     rmax = aimax[row]; nrow = ailen[row];  \
40f5e9677aSSatish Balay     col1 = col - shift; \
41f5e9677aSSatish Balay      \
42ba4e3ef2SSatish Balay     low = 0; high = nrow; \
43ba4e3ef2SSatish Balay     while (high-low > 5) { \
44ba4e3ef2SSatish Balay       t = (low+high)/2; \
45ba4e3ef2SSatish Balay       if (rp[t] > col) high = t; \
46ba4e3ef2SSatish Balay       else             low  = t; \
47ba4e3ef2SSatish Balay     } \
480520107fSSatish Balay       for ( _i=0; _i<nrow; _i++ ) { \
49f5e9677aSSatish Balay         if (rp[_i] > col1) break; \
50f5e9677aSSatish Balay         if (rp[_i] == col1) { \
510520107fSSatish Balay           if (addv == ADD_VALUES) ap[_i] += value;   \
520520107fSSatish Balay           else                  ap[_i] = value; \
5330770e4dSSatish Balay           goto a_noinsert; \
540520107fSSatish Balay         } \
550520107fSSatish Balay       }  \
5689280ab3SLois Curfman McInnes       if (nonew == 1) goto a_noinsert; \
57a8c6a408SBarry Smith       else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \
580520107fSSatish Balay       if (nrow >= rmax) { \
590520107fSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
600520107fSSatish Balay         int    new_nz = ai[a->m] + CHUNKSIZE,len,*new_i,*new_j; \
610520107fSSatish Balay         Scalar *new_a; \
620520107fSSatish Balay  \
63a8c6a408SBarry Smith         if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \
6489280ab3SLois Curfman McInnes  \
650520107fSSatish Balay         /* malloc new storage space */ \
660520107fSSatish Balay         len     = new_nz*(sizeof(int)+sizeof(Scalar))+(a->m+1)*sizeof(int); \
670520107fSSatish Balay         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \
680520107fSSatish Balay         new_j   = (int *) (new_a + new_nz); \
690520107fSSatish Balay         new_i   = new_j + new_nz; \
700520107fSSatish Balay  \
710520107fSSatish Balay         /* copy over old data into new slots */ \
720520107fSSatish Balay         for ( ii=0; ii<row+1; ii++ ) {new_i[ii] = ai[ii];} \
730520107fSSatish Balay         for ( ii=row+1; ii<a->m+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
740520107fSSatish Balay         PetscMemcpy(new_j,aj,(ai[row]+nrow+shift)*sizeof(int)); \
750520107fSSatish Balay         len = (new_nz - CHUNKSIZE - ai[row] - nrow - shift); \
760520107fSSatish Balay         PetscMemcpy(new_j+ai[row]+shift+nrow+CHUNKSIZE,aj+ai[row]+shift+nrow, \
770520107fSSatish Balay                                                            len*sizeof(int)); \
780520107fSSatish Balay         PetscMemcpy(new_a,aa,(ai[row]+nrow+shift)*sizeof(Scalar)); \
790520107fSSatish Balay         PetscMemcpy(new_a+ai[row]+shift+nrow+CHUNKSIZE,aa+ai[row]+shift+nrow, \
800520107fSSatish Balay                                                            len*sizeof(Scalar));  \
810520107fSSatish Balay         /* free up old matrix storage */ \
82f5e9677aSSatish Balay  \
830520107fSSatish Balay         PetscFree(a->a);  \
840520107fSSatish Balay         if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} \
850520107fSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
860520107fSSatish Balay         a->singlemalloc = 1; \
870520107fSSatish Balay  \
880520107fSSatish Balay         rp   = aj + ai[row] + shift; ap = aa + ai[row] + shift; \
8930770e4dSSatish Balay         rmax = aimax[row] = aimax[row] + CHUNKSIZE; \
900520107fSSatish Balay         PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + sizeof(Scalar))); \
910520107fSSatish Balay         a->maxnz += CHUNKSIZE; \
920520107fSSatish Balay         a->reallocs++; \
930520107fSSatish Balay       } \
940520107fSSatish Balay       N = nrow++ - 1; a->nz++; \
950520107fSSatish Balay       /* shift up all the later entries in this row */ \
960520107fSSatish Balay       for ( ii=N; ii>=_i; ii-- ) { \
970520107fSSatish Balay         rp[ii+1] = rp[ii]; \
980520107fSSatish Balay         ap[ii+1] = ap[ii]; \
990520107fSSatish Balay       } \
100f5e9677aSSatish Balay       rp[_i] = col1;  \
1010520107fSSatish Balay       ap[_i] = value;  \
10230770e4dSSatish Balay       a_noinsert: ; \
1030520107fSSatish Balay       ailen[row] = nrow; \
1040520107fSSatish Balay }
1050a198c4cSBarry Smith 
10630770e4dSSatish Balay #define MatSetValues_SeqAIJ_B_Private(row,col,value,addv) \
10730770e4dSSatish Balay { \
10830770e4dSSatish Balay  \
10930770e4dSSatish Balay     rp   = bj + bi[row] + shift; ap = ba + bi[row] + shift; \
11030770e4dSSatish Balay     rmax = bimax[row]; nrow = bilen[row];  \
11130770e4dSSatish Balay     col1 = col - shift; \
11230770e4dSSatish Balay      \
113ba4e3ef2SSatish Balay     low = 0; high = nrow; \
114ba4e3ef2SSatish Balay     while (high-low > 5) { \
115ba4e3ef2SSatish Balay       t = (low+high)/2; \
116ba4e3ef2SSatish Balay       if (rp[t] > col) high = t; \
117ba4e3ef2SSatish Balay       else             low  = t; \
118ba4e3ef2SSatish Balay     } \
11930770e4dSSatish Balay        for ( _i=0; _i<nrow; _i++ ) { \
12030770e4dSSatish Balay         if (rp[_i] > col1) break; \
12130770e4dSSatish Balay         if (rp[_i] == col1) { \
12230770e4dSSatish Balay           if (addv == ADD_VALUES) ap[_i] += value;   \
12330770e4dSSatish Balay           else                  ap[_i] = value; \
12430770e4dSSatish Balay           goto b_noinsert; \
12530770e4dSSatish Balay         } \
12630770e4dSSatish Balay       }  \
12789280ab3SLois Curfman McInnes       if (nonew == 1) goto b_noinsert; \
128a8c6a408SBarry Smith       else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \
12930770e4dSSatish Balay       if (nrow >= rmax) { \
13030770e4dSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
13174c639caSSatish Balay         int    new_nz = bi[b->m] + CHUNKSIZE,len,*new_i,*new_j; \
13230770e4dSSatish Balay         Scalar *new_a; \
13330770e4dSSatish Balay  \
134a8c6a408SBarry Smith         if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \
13589280ab3SLois Curfman McInnes  \
13630770e4dSSatish Balay         /* malloc new storage space */ \
13774c639caSSatish Balay         len     = new_nz*(sizeof(int)+sizeof(Scalar))+(b->m+1)*sizeof(int); \
13830770e4dSSatish Balay         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \
13930770e4dSSatish Balay         new_j   = (int *) (new_a + new_nz); \
14030770e4dSSatish Balay         new_i   = new_j + new_nz; \
14130770e4dSSatish Balay  \
14230770e4dSSatish Balay         /* copy over old data into new slots */ \
14330770e4dSSatish Balay         for ( ii=0; ii<row+1; ii++ ) {new_i[ii] = bi[ii];} \
14474c639caSSatish Balay         for ( ii=row+1; ii<b->m+1; ii++ ) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
14530770e4dSSatish Balay         PetscMemcpy(new_j,bj,(bi[row]+nrow+shift)*sizeof(int)); \
14630770e4dSSatish Balay         len = (new_nz - CHUNKSIZE - bi[row] - nrow - shift); \
14730770e4dSSatish Balay         PetscMemcpy(new_j+bi[row]+shift+nrow+CHUNKSIZE,bj+bi[row]+shift+nrow, \
14830770e4dSSatish Balay                                                            len*sizeof(int)); \
14930770e4dSSatish Balay         PetscMemcpy(new_a,ba,(bi[row]+nrow+shift)*sizeof(Scalar)); \
15030770e4dSSatish Balay         PetscMemcpy(new_a+bi[row]+shift+nrow+CHUNKSIZE,ba+bi[row]+shift+nrow, \
15130770e4dSSatish Balay                                                            len*sizeof(Scalar));  \
15230770e4dSSatish Balay         /* free up old matrix storage */ \
15330770e4dSSatish Balay  \
15474c639caSSatish Balay         PetscFree(b->a);  \
15574c639caSSatish Balay         if (!b->singlemalloc) {PetscFree(b->i);PetscFree(b->j);} \
15674c639caSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
15774c639caSSatish Balay         b->singlemalloc = 1; \
15830770e4dSSatish Balay  \
15930770e4dSSatish Balay         rp   = bj + bi[row] + shift; ap = ba + bi[row] + shift; \
16030770e4dSSatish Balay         rmax = bimax[row] = bimax[row] + CHUNKSIZE; \
16174c639caSSatish Balay         PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + sizeof(Scalar))); \
16274c639caSSatish Balay         b->maxnz += CHUNKSIZE; \
16374c639caSSatish Balay         b->reallocs++; \
16430770e4dSSatish Balay       } \
16574c639caSSatish Balay       N = nrow++ - 1; b->nz++; \
16630770e4dSSatish Balay       /* shift up all the later entries in this row */ \
16730770e4dSSatish Balay       for ( ii=N; ii>=_i; ii-- ) { \
16830770e4dSSatish Balay         rp[ii+1] = rp[ii]; \
16930770e4dSSatish Balay         ap[ii+1] = ap[ii]; \
17030770e4dSSatish Balay       } \
17130770e4dSSatish Balay       rp[_i] = col1;  \
17230770e4dSSatish Balay       ap[_i] = value;  \
17330770e4dSSatish Balay       b_noinsert: ; \
17430770e4dSSatish Balay       bilen[row] = nrow; \
17530770e4dSSatish Balay }
17630770e4dSSatish Balay 
1770520107fSSatish Balay extern int MatSetValues_SeqAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode);
1785615d1e5SSatish Balay #undef __FUNC__
1795615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIAIJ"
1808f6be9afSLois Curfman McInnes int MatSetValues_MPIAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
1818a729477SBarry Smith {
18244a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
1834b0e389bSBarry Smith   Scalar     value;
1841eb62cbbSBarry Smith   int        ierr,i,j, rstart = aij->rstart, rend = aij->rend;
1851eb62cbbSBarry Smith   int        cstart = aij->cstart, cend = aij->cend,row,col;
186905e6a2fSBarry Smith   int        roworiented = aij->roworiented;
1878a729477SBarry Smith 
1880520107fSSatish Balay   /* Some Variables required in the macro */
1894ee7247eSSatish Balay   Mat        A = aij->A;
1904ee7247eSSatish Balay   Mat_SeqAIJ *a = (Mat_SeqAIJ *) A->data;
19130770e4dSSatish Balay   int        *aimax = a->imax, *ai = a->i, *ailen = a->ilen,*aj = a->j;
19230770e4dSSatish Balay   Scalar     *aa = a->a;
19330770e4dSSatish Balay 
19430770e4dSSatish Balay   Mat        B = aij->B;
19530770e4dSSatish Balay   Mat_SeqAIJ *b = (Mat_SeqAIJ *) B->data;
19630770e4dSSatish Balay   int        *bimax = b->imax, *bi = b->i, *bilen = b->ilen,*bj = b->j;
19730770e4dSSatish Balay   Scalar     *ba = b->a;
19830770e4dSSatish Balay 
199ba4e3ef2SSatish Balay   int        *rp,ii,nrow,_i,rmax, N, col1,low,high,t;
20030770e4dSSatish Balay   int        nonew = a->nonew,shift = a->indexshift;
20130770e4dSSatish Balay   Scalar     *ap;
2024ee7247eSSatish Balay 
2033a40ed3dSBarry Smith   PetscFunctionBegin;
2048a729477SBarry Smith   for ( i=0; i<m; i++ ) {
2053a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
206a8c6a408SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
207a8c6a408SBarry Smith     if (im[i] >= aij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
2080a198c4cSBarry Smith #endif
2094b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
2104b0e389bSBarry Smith       row = im[i] - rstart;
2111eb62cbbSBarry Smith       for ( j=0; j<n; j++ ) {
2124b0e389bSBarry Smith         if (in[j] >= cstart && in[j] < cend){
2134b0e389bSBarry Smith           col = in[j] - cstart;
2144b0e389bSBarry Smith           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
21530770e4dSSatish Balay           MatSetValues_SeqAIJ_A_Private(row,col,value,addv);
2160520107fSSatish Balay           /* ierr = MatSetValues_SeqAIJ(aij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
2171eb62cbbSBarry Smith         }
2183a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
219a8c6a408SBarry Smith         else if (in[j] < 0) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");}
220a8c6a408SBarry Smith         else if (in[j] >= aij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");}
2210a198c4cSBarry Smith #endif
2221eb62cbbSBarry Smith         else {
223227d817aSBarry Smith           if (mat->was_assembled) {
224905e6a2fSBarry Smith             if (!aij->colmap) {
225905e6a2fSBarry Smith               ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr);
226905e6a2fSBarry Smith             }
227905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
228ec8511deSBarry Smith             if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
2292493cbb0SBarry Smith               ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
2304b0e389bSBarry Smith               col =  in[j];
2319bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
232f9508a3cSSatish Balay               B = aij->B;
233f9508a3cSSatish Balay               b = (Mat_SeqAIJ *) B->data;
234f9508a3cSSatish Balay               bimax = b->imax; bi = b->i; bilen = b->ilen; bj = b->j;
235f9508a3cSSatish Balay               ba = b->a;
236d6dfbf8fSBarry Smith             }
237c48de900SBarry Smith           } else col = in[j];
2384b0e389bSBarry Smith           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
23930770e4dSSatish Balay           MatSetValues_SeqAIJ_B_Private(row,col,value,addv);
24030770e4dSSatish Balay           /* ierr = MatSetValues_SeqAIJ(aij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
2411eb62cbbSBarry Smith         }
2421eb62cbbSBarry Smith       }
2431eb62cbbSBarry Smith     }
2441eb62cbbSBarry Smith     else {
24590f02eecSBarry Smith       if (roworiented && !aij->donotstash) {
2464b0e389bSBarry Smith         ierr = StashValues_Private(&aij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr);
2474b0e389bSBarry Smith       }
2484b0e389bSBarry Smith       else {
24990f02eecSBarry Smith         if (!aij->donotstash) {
2504b0e389bSBarry Smith           row = im[i];
2514b0e389bSBarry Smith           for ( j=0; j<n; j++ ) {
2524b0e389bSBarry Smith             ierr = StashValues_Private(&aij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr);
2534b0e389bSBarry Smith           }
2544b0e389bSBarry Smith         }
2551eb62cbbSBarry Smith       }
2568a729477SBarry Smith     }
25790f02eecSBarry Smith   }
2583a40ed3dSBarry Smith   PetscFunctionReturn(0);
2598a729477SBarry Smith }
2608a729477SBarry Smith 
2615615d1e5SSatish Balay #undef __FUNC__
2625615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIAIJ"
2638f6be9afSLois Curfman McInnes int MatGetValues_MPIAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v)
264b49de8d1SLois Curfman McInnes {
265b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
266b49de8d1SLois Curfman McInnes   int        ierr,i,j, rstart = aij->rstart, rend = aij->rend;
267b49de8d1SLois Curfman McInnes   int        cstart = aij->cstart, cend = aij->cend,row,col;
268b49de8d1SLois Curfman McInnes 
2693a40ed3dSBarry Smith   PetscFunctionBegin;
270b49de8d1SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
271a8c6a408SBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
272a8c6a408SBarry Smith     if (idxm[i] >= aij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
273b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
274b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
275b49de8d1SLois Curfman McInnes       for ( j=0; j<n; j++ ) {
276a8c6a408SBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");
277a8c6a408SBarry Smith         if (idxn[j] >= aij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");
278b49de8d1SLois Curfman McInnes         if (idxn[j] >= cstart && idxn[j] < cend){
279b49de8d1SLois Curfman McInnes           col = idxn[j] - cstart;
280b49de8d1SLois Curfman McInnes           ierr = MatGetValues(aij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr);
281*fa852ad4SSatish Balay         } else {
282905e6a2fSBarry Smith           if (!aij->colmap) {
283905e6a2fSBarry Smith             ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr);
284905e6a2fSBarry Smith           }
285905e6a2fSBarry Smith           col = aij->colmap[idxn[j]] - 1;
286e60e1c95SSatish Balay           if ((col < 0) || (aij->garray[col] != idxn[j])) *(v+i*n+j) = 0.0;
287d9d09a02SSatish Balay           else {
288b49de8d1SLois Curfman McInnes             ierr = MatGetValues(aij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr);
289b49de8d1SLois Curfman McInnes           }
290b49de8d1SLois Curfman McInnes         }
291b49de8d1SLois Curfman McInnes       }
292a8c6a408SBarry Smith     } else {
293a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported");
294b49de8d1SLois Curfman McInnes     }
295b49de8d1SLois Curfman McInnes   }
2963a40ed3dSBarry Smith   PetscFunctionReturn(0);
297b49de8d1SLois Curfman McInnes }
298b49de8d1SLois Curfman McInnes 
2995615d1e5SSatish Balay #undef __FUNC__
3005615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIAIJ"
3018f6be9afSLois Curfman McInnes int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode)
3028a729477SBarry Smith {
30344a69424SLois Curfman McInnes   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
304d6dfbf8fSBarry Smith   MPI_Comm    comm = mat->comm;
30517699dbbSLois Curfman McInnes   int         size = aij->size, *owners = aij->rowners;
30617699dbbSLois Curfman McInnes   int         rank = aij->rank,tag = mat->tag, *owner,*starts,count,ierr;
3071eb62cbbSBarry Smith   MPI_Request *send_waits,*recv_waits;
3086abc6512SBarry Smith   int         *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work;
3091eb62cbbSBarry Smith   InsertMode  addv;
3101eb62cbbSBarry Smith   Scalar      *rvalues,*svalues;
3111eb62cbbSBarry Smith 
3123a40ed3dSBarry Smith   PetscFunctionBegin;
313b5bd3ad5SBarry Smith   if (aij->donotstash) {
314b5bd3ad5SBarry Smith     aij->svalues    = 0; aij->rvalues    = 0;
315b5bd3ad5SBarry Smith     aij->nsends     = 0; aij->nrecvs     = 0;
316b5bd3ad5SBarry Smith     aij->send_waits = 0; aij->recv_waits = 0;
317b5bd3ad5SBarry Smith     aij->rmax       = 0;
318b5bd3ad5SBarry Smith     PetscFunctionReturn(0);
319b5bd3ad5SBarry Smith   }
320b5bd3ad5SBarry Smith 
3211eb62cbbSBarry Smith   /* make sure all processors are either in INSERTMODE or ADDMODE */
322ca161407SBarry Smith   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr);
323dbb450caSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
324a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added");
3251eb62cbbSBarry Smith   }
32647794344SBarry Smith   mat->insertmode = addv; /* in case this processor had no cache */
3271eb62cbbSBarry Smith 
3281eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
3290452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
330cddf8d76SBarry Smith   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
3310452661fSBarry Smith   owner = (int *) PetscMalloc( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner);
3321eb62cbbSBarry Smith   for ( i=0; i<aij->stash.n; i++ ) {
3331eb62cbbSBarry Smith     idx = aij->stash.idx[i];
33417699dbbSLois Curfman McInnes     for ( j=0; j<size; j++ ) {
3351eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
3361eb62cbbSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; break;
3378a729477SBarry Smith       }
3388a729477SBarry Smith     }
3398a729477SBarry Smith   }
34017699dbbSLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
3411eb62cbbSBarry Smith 
3421eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
3430452661fSBarry Smith   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
344ca161407SBarry Smith   ierr = MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
34517699dbbSLois Curfman McInnes   nreceives = work[rank];
346ca161407SBarry Smith   ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
34717699dbbSLois Curfman McInnes   nmax = work[rank];
3480452661fSBarry Smith   PetscFree(work);
3491eb62cbbSBarry Smith 
3501eb62cbbSBarry Smith   /* post receives:
3511eb62cbbSBarry Smith        1) each message will consist of ordered pairs
3521eb62cbbSBarry Smith      (global index,value) we store the global index as a double
353d6dfbf8fSBarry Smith      to simplify the message passing.
3541eb62cbbSBarry Smith        2) since we don't know how long each individual message is we
3551eb62cbbSBarry Smith      allocate the largest needed buffer for each receive. Potentially
3561eb62cbbSBarry Smith      this is a lot of wasted space.
3571eb62cbbSBarry Smith 
3581eb62cbbSBarry Smith 
3591eb62cbbSBarry Smith        This could be done better.
3601eb62cbbSBarry Smith   */
361ca161407SBarry Smith   rvalues    = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues);
362ca161407SBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
3631eb62cbbSBarry Smith   for ( i=0; i<nreceives; i++ ) {
364ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,
365ca161407SBarry Smith               comm,recv_waits+i);CHKERRQ(ierr);
3661eb62cbbSBarry Smith   }
3671eb62cbbSBarry Smith 
3681eb62cbbSBarry Smith   /* do sends:
3691eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
3701eb62cbbSBarry Smith          the ith processor
3711eb62cbbSBarry Smith   */
3720452661fSBarry Smith   svalues    = (Scalar *) PetscMalloc(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues);
373ca161407SBarry Smith   send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
3740452661fSBarry Smith   starts     = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts);
3751eb62cbbSBarry Smith   starts[0]  = 0;
37617699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3771eb62cbbSBarry Smith   for ( i=0; i<aij->stash.n; i++ ) {
3781eb62cbbSBarry Smith     svalues[3*starts[owner[i]]]       = (Scalar)  aij->stash.idx[i];
3791eb62cbbSBarry Smith     svalues[3*starts[owner[i]]+1]     = (Scalar)  aij->stash.idy[i];
3801eb62cbbSBarry Smith     svalues[3*(starts[owner[i]]++)+2] =  aij->stash.array[i];
3811eb62cbbSBarry Smith   }
3820452661fSBarry Smith   PetscFree(owner);
3831eb62cbbSBarry Smith   starts[0] = 0;
38417699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3851eb62cbbSBarry Smith   count = 0;
38617699dbbSLois Curfman McInnes   for ( i=0; i<size; i++ ) {
3871eb62cbbSBarry Smith     if (procs[i]) {
388ca161407SBarry Smith       ierr = MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
3891eb62cbbSBarry Smith     }
3901eb62cbbSBarry Smith   }
391b5bd3ad5SBarry Smith   PetscFree(starts);
392b5bd3ad5SBarry Smith   PetscFree(nprocs);
3931eb62cbbSBarry Smith 
3941eb62cbbSBarry Smith   /* Free cache space */
39510a665d1SBarry Smith   PLogInfo(aij->A,"MatAssemblyBegin_MPIAIJ:Number of off-processor values %d\n",aij->stash.n);
39678b31e54SBarry Smith   ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr);
3971eb62cbbSBarry Smith 
3981eb62cbbSBarry Smith   aij->svalues    = svalues;    aij->rvalues    = rvalues;
3991eb62cbbSBarry Smith   aij->nsends     = nsends;     aij->nrecvs     = nreceives;
4001eb62cbbSBarry Smith   aij->send_waits = send_waits; aij->recv_waits = recv_waits;
4011eb62cbbSBarry Smith   aij->rmax       = nmax;
4021eb62cbbSBarry Smith 
4033a40ed3dSBarry Smith   PetscFunctionReturn(0);
4041eb62cbbSBarry Smith }
40544a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat);
4061eb62cbbSBarry Smith 
4075615d1e5SSatish Balay #undef __FUNC__
4085615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIAIJ"
4098f6be9afSLois Curfman McInnes int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode)
4101eb62cbbSBarry Smith {
41144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
4121eb62cbbSBarry Smith   MPI_Status  *send_status,recv_status;
413416022c9SBarry Smith   int         imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr;
414905e6a2fSBarry Smith   int         row,col,other_disassembled;
4151eb62cbbSBarry Smith   Scalar      *values,val;
41647794344SBarry Smith   InsertMode  addv = mat->insertmode;
4171eb62cbbSBarry Smith 
4183a40ed3dSBarry Smith   PetscFunctionBegin;
419b5bd3ad5SBarry Smith 
4201eb62cbbSBarry Smith   /*  wait on receives */
4211eb62cbbSBarry Smith   while (count) {
422ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4231eb62cbbSBarry Smith     /* unpack receives into our local space */
424d6dfbf8fSBarry Smith     values = aij->rvalues + 3*imdex*aij->rmax;
425ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,&n);CHKERRQ(ierr);
4261eb62cbbSBarry Smith     n = n/3;
4271eb62cbbSBarry Smith     for ( i=0; i<n; i++ ) {
428227d817aSBarry Smith       row = (int) PetscReal(values[3*i]) - aij->rstart;
429227d817aSBarry Smith       col = (int) PetscReal(values[3*i+1]);
4301eb62cbbSBarry Smith       val = values[3*i+2];
4311eb62cbbSBarry Smith       if (col >= aij->cstart && col < aij->cend) {
4321eb62cbbSBarry Smith         col -= aij->cstart;
4336fd7127cSSatish Balay         ierr = MatSetValues(aij->A,1,&row,1,&col,&val,addv); CHKERRQ(ierr);
4343a40ed3dSBarry Smith       } else {
43555a1b374SBarry Smith         if (mat->was_assembled || mat->assembled) {
436905e6a2fSBarry Smith           if (!aij->colmap) {
437905e6a2fSBarry Smith             ierr = CreateColmap_MPIAIJ_Private(mat); CHKERRQ(ierr);
438905e6a2fSBarry Smith           }
439905e6a2fSBarry Smith           col = aij->colmap[col] - 1;
440ec8511deSBarry Smith           if (col < 0  && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
4412493cbb0SBarry Smith             ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
442227d817aSBarry Smith             col = (int) PetscReal(values[3*i+1]);
443d6dfbf8fSBarry Smith           }
4449e25ed09SBarry Smith         }
4456fd7127cSSatish Balay         ierr = MatSetValues(aij->B,1,&row,1,&col,&val,addv); CHKERRQ(ierr);
4461eb62cbbSBarry Smith       }
4471eb62cbbSBarry Smith     }
4481eb62cbbSBarry Smith     count--;
4491eb62cbbSBarry Smith   }
450570da906SBarry Smith   if (aij->recv_waits) PetscFree(aij->recv_waits);
451570da906SBarry Smith   if (aij->rvalues)    PetscFree(aij->rvalues);
4521eb62cbbSBarry Smith 
4531eb62cbbSBarry Smith   /* wait on sends */
4541eb62cbbSBarry Smith   if (aij->nsends) {
4550a198c4cSBarry Smith     send_status = (MPI_Status *) PetscMalloc(aij->nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
456ca161407SBarry Smith     ierr        = MPI_Waitall(aij->nsends,aij->send_waits,send_status);CHKERRQ(ierr);
4570452661fSBarry Smith     PetscFree(send_status);
4581eb62cbbSBarry Smith   }
459b5bd3ad5SBarry Smith   if (aij->send_waits) PetscFree(aij->send_waits);
460b5bd3ad5SBarry Smith   if (aij->svalues)    PetscFree(aij->svalues);
4611eb62cbbSBarry Smith 
46278b31e54SBarry Smith   ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr);
46378b31e54SBarry Smith   ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr);
4641eb62cbbSBarry Smith 
4652493cbb0SBarry Smith   /* determine if any processor has disassembled, if so we must
4662493cbb0SBarry Smith      also disassemble ourselfs, in order that we may reassemble. */
46741e46ba1SBarry Smith   /*
46841e46ba1SBarry Smith      if nonzero structure of submatrix B cannot change then we know that
46941e46ba1SBarry Smith      no processor disassembled thus we can skip this stuff
47041e46ba1SBarry Smith   */
47141e46ba1SBarry Smith   if (!((Mat_SeqAIJ*) aij->B->data)->nonew)  {
472ca161407SBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
473227d817aSBarry Smith     if (mat->was_assembled && !other_disassembled) {
4742493cbb0SBarry Smith       ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
4752493cbb0SBarry Smith     }
47641e46ba1SBarry Smith   }
4772493cbb0SBarry Smith 
4786d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
47978b31e54SBarry Smith     ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr);
4805e42470aSBarry Smith   }
48178b31e54SBarry Smith   ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr);
48278b31e54SBarry Smith   ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr);
4835e42470aSBarry Smith 
4847a0afa10SBarry Smith   if (aij->rowvalues) {PetscFree(aij->rowvalues); aij->rowvalues = 0;}
4853a40ed3dSBarry Smith   PetscFunctionReturn(0);
4868a729477SBarry Smith }
4878a729477SBarry Smith 
4885615d1e5SSatish Balay #undef __FUNC__
4895615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIAIJ"
4908f6be9afSLois Curfman McInnes int MatZeroEntries_MPIAIJ(Mat A)
4911eb62cbbSBarry Smith {
49244a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data;
493dbd7a890SLois Curfman McInnes   int        ierr;
4943a40ed3dSBarry Smith 
4953a40ed3dSBarry Smith   PetscFunctionBegin;
49678b31e54SBarry Smith   ierr = MatZeroEntries(l->A); CHKERRQ(ierr);
49778b31e54SBarry Smith   ierr = MatZeroEntries(l->B); CHKERRQ(ierr);
4983a40ed3dSBarry Smith   PetscFunctionReturn(0);
4991eb62cbbSBarry Smith }
5001eb62cbbSBarry Smith 
5015615d1e5SSatish Balay #undef __FUNC__
5025615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIAIJ"
5038f6be9afSLois Curfman McInnes int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag)
5041eb62cbbSBarry Smith {
50544a69424SLois Curfman McInnes   Mat_MPIAIJ     *l = (Mat_MPIAIJ *) A->data;
50617699dbbSLois Curfman McInnes   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
5076a5c57faSSatish Balay   int            *procs,*nprocs,j,found,idx,nsends,*work,row;
50817699dbbSLois Curfman McInnes   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
5095392566eSBarry Smith   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
5106a5c57faSSatish Balay   int            *lens,imdex,*lrows,*values,rstart=l->rstart;
511d6dfbf8fSBarry Smith   MPI_Comm       comm = A->comm;
5121eb62cbbSBarry Smith   MPI_Request    *send_waits,*recv_waits;
5131eb62cbbSBarry Smith   MPI_Status     recv_status,*send_status;
5141eb62cbbSBarry Smith   IS             istmp;
5156eb55b6aSBarry Smith   PetscTruth     localdiag;
5161eb62cbbSBarry Smith 
5173a40ed3dSBarry Smith   PetscFunctionBegin;
51877c4ece6SBarry Smith   ierr = ISGetSize(is,&N); CHKERRQ(ierr);
51978b31e54SBarry Smith   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
5201eb62cbbSBarry Smith 
5211eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
5220452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
523cddf8d76SBarry Smith   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
5240452661fSBarry Smith   owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/
5251eb62cbbSBarry Smith   for ( i=0; i<N; i++ ) {
5261eb62cbbSBarry Smith     idx = rows[i];
5271eb62cbbSBarry Smith     found = 0;
52817699dbbSLois Curfman McInnes     for ( j=0; j<size; j++ ) {
5291eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
5301eb62cbbSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
5311eb62cbbSBarry Smith       }
5321eb62cbbSBarry Smith     }
533a8c6a408SBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range");
5341eb62cbbSBarry Smith   }
53517699dbbSLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
5361eb62cbbSBarry Smith 
5371eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
5380452661fSBarry Smith   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
539ca161407SBarry Smith   ierr = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
54017699dbbSLois Curfman McInnes   nrecvs = work[rank];
541ca161407SBarry Smith   ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
54217699dbbSLois Curfman McInnes   nmax = work[rank];
5430452661fSBarry Smith   PetscFree(work);
5441eb62cbbSBarry Smith 
5451eb62cbbSBarry Smith   /* post receives:   */
5463a40ed3dSBarry Smith   rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues);
547ca161407SBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
5481eb62cbbSBarry Smith   for ( i=0; i<nrecvs; i++ ) {
549ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
5501eb62cbbSBarry Smith   }
5511eb62cbbSBarry Smith 
5521eb62cbbSBarry Smith   /* do sends:
5531eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
5541eb62cbbSBarry Smith          the ith processor
5551eb62cbbSBarry Smith   */
5560452661fSBarry Smith   svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues);
5573a40ed3dSBarry Smith   send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
5580452661fSBarry Smith   starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts);
5591eb62cbbSBarry Smith   starts[0] = 0;
56017699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
5611eb62cbbSBarry Smith   for ( i=0; i<N; i++ ) {
5621eb62cbbSBarry Smith     svalues[starts[owner[i]]++] = rows[i];
5631eb62cbbSBarry Smith   }
5641eb62cbbSBarry Smith   ISRestoreIndices(is,&rows);
5651eb62cbbSBarry Smith 
5661eb62cbbSBarry Smith   starts[0] = 0;
56717699dbbSLois Curfman McInnes   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
5681eb62cbbSBarry Smith   count = 0;
56917699dbbSLois Curfman McInnes   for ( i=0; i<size; i++ ) {
5701eb62cbbSBarry Smith     if (procs[i]) {
571ca161407SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
5721eb62cbbSBarry Smith     }
5731eb62cbbSBarry Smith   }
5740452661fSBarry Smith   PetscFree(starts);
5751eb62cbbSBarry Smith 
57617699dbbSLois Curfman McInnes   base = owners[rank];
5771eb62cbbSBarry Smith 
5781eb62cbbSBarry Smith   /*  wait on receives */
5790452661fSBarry Smith   lens   = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens);
5801eb62cbbSBarry Smith   source = lens + nrecvs;
5811eb62cbbSBarry Smith   count  = nrecvs; slen = 0;
5821eb62cbbSBarry Smith   while (count) {
583ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
5841eb62cbbSBarry Smith     /* unpack receives into our local space */
585ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
586d6dfbf8fSBarry Smith     source[imdex]  = recv_status.MPI_SOURCE;
587d6dfbf8fSBarry Smith     lens[imdex]  = n;
5881eb62cbbSBarry Smith     slen += n;
5891eb62cbbSBarry Smith     count--;
5901eb62cbbSBarry Smith   }
5910452661fSBarry Smith   PetscFree(recv_waits);
5921eb62cbbSBarry Smith 
5931eb62cbbSBarry Smith   /* move the data into the send scatter */
5940452661fSBarry Smith   lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows);
5951eb62cbbSBarry Smith   count = 0;
5961eb62cbbSBarry Smith   for ( i=0; i<nrecvs; i++ ) {
5971eb62cbbSBarry Smith     values = rvalues + i*nmax;
5981eb62cbbSBarry Smith     for ( j=0; j<lens[i]; j++ ) {
5991eb62cbbSBarry Smith       lrows[count++] = values[j] - base;
6001eb62cbbSBarry Smith     }
6011eb62cbbSBarry Smith   }
6020452661fSBarry Smith   PetscFree(rvalues); PetscFree(lens);
6030452661fSBarry Smith   PetscFree(owner); PetscFree(nprocs);
6041eb62cbbSBarry Smith 
6051eb62cbbSBarry Smith   /* actually zap the local rows */
606029af93fSBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
607464493b3SBarry Smith   PLogObjectParent(A,istmp);
6086a5c57faSSatish Balay 
6096eb55b6aSBarry Smith   /*
6106eb55b6aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
6116eb55b6aSBarry Smith      is square and the user wishes to set the diagonal we use seperate
6126eb55b6aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
6136eb55b6aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
6146eb55b6aSBarry Smith 
6156eb55b6aSBarry Smith        Contributed by: Mathew Knepley
6166eb55b6aSBarry Smith   */
6176eb55b6aSBarry Smith   localdiag = PETSC_FALSE;
6186eb55b6aSBarry Smith   if (diag && (l->A->M == l->A->N)) {
6196eb55b6aSBarry Smith     localdiag = PETSC_TRUE;
6206eb55b6aSBarry Smith     ierr      = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr);
6216eb55b6aSBarry Smith   } else {
6226a5c57faSSatish Balay     ierr = MatZeroRows(l->A,istmp,0); CHKERRQ(ierr);
6236eb55b6aSBarry Smith   }
62478b31e54SBarry Smith   ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr);
62578b31e54SBarry Smith   ierr = ISDestroy(istmp); CHKERRQ(ierr);
6261eb62cbbSBarry Smith 
6276eb55b6aSBarry Smith   if (diag && (localdiag == PETSC_FALSE)) {
6286eb55b6aSBarry Smith     for ( i = 0; i < slen; i++ ) {
6296eb55b6aSBarry Smith       row = lrows[i] + rstart;
6306eb55b6aSBarry Smith       MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);
6316eb55b6aSBarry Smith     }
6326eb55b6aSBarry Smith     MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);
6336eb55b6aSBarry Smith     MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);
6346eb55b6aSBarry Smith   }
6356eb55b6aSBarry Smith 
6366a5c57faSSatish Balay   if (diag) {
6376a5c57faSSatish Balay     for ( i = 0; i < slen; i++ ) {
6386a5c57faSSatish Balay       row = lrows[i] + rstart;
6396a5c57faSSatish Balay       MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);
6406a5c57faSSatish Balay     }
6416a5c57faSSatish Balay     MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);
6426a5c57faSSatish Balay     MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);
6436a5c57faSSatish Balay   }
6446a5c57faSSatish Balay   PetscFree(lrows);
64572dacd9aSBarry Smith 
6461eb62cbbSBarry Smith   /* wait on sends */
6471eb62cbbSBarry Smith   if (nsends) {
648ca161407SBarry Smith     send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
649ca161407SBarry Smith     ierr        = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
6500452661fSBarry Smith     PetscFree(send_status);
6511eb62cbbSBarry Smith   }
6520452661fSBarry Smith   PetscFree(send_waits); PetscFree(svalues);
6531eb62cbbSBarry Smith 
6543a40ed3dSBarry Smith   PetscFunctionReturn(0);
6551eb62cbbSBarry Smith }
6561eb62cbbSBarry Smith 
6575615d1e5SSatish Balay #undef __FUNC__
6585615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIAIJ"
6598f6be9afSLois Curfman McInnes int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy)
6601eb62cbbSBarry Smith {
661416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
662fbd6ef76SBarry Smith   int        ierr,nt;
663416022c9SBarry Smith 
6643a40ed3dSBarry Smith   PetscFunctionBegin;
665a2ce50c7SBarry Smith   ierr = VecGetLocalSize(xx,&nt);  CHKERRQ(ierr);
666fbd6ef76SBarry Smith   if (nt != a->n) {
667a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx");
668fbd6ef76SBarry Smith   }
66943a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx); CHKERRQ(ierr);
670f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy); CHKERRQ(ierr);
67143a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx); CHKERRQ(ierr);
672f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr);
6733a40ed3dSBarry Smith   PetscFunctionReturn(0);
6741eb62cbbSBarry Smith }
6751eb62cbbSBarry Smith 
6765615d1e5SSatish Balay #undef __FUNC__
6775615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIAIJ"
6788f6be9afSLois Curfman McInnes int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
679da3a660dSBarry Smith {
680416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
681da3a660dSBarry Smith   int        ierr;
6823a40ed3dSBarry Smith 
6833a40ed3dSBarry Smith   PetscFunctionBegin;
68443a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
685f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz); CHKERRQ(ierr);
68643a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
687f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr);
6883a40ed3dSBarry Smith   PetscFunctionReturn(0);
689da3a660dSBarry Smith }
690da3a660dSBarry Smith 
6915615d1e5SSatish Balay #undef __FUNC__
6925615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIAIJ"
6938f6be9afSLois Curfman McInnes int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy)
694da3a660dSBarry Smith {
695416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
696da3a660dSBarry Smith   int        ierr;
697da3a660dSBarry Smith 
6983a40ed3dSBarry Smith   PetscFunctionBegin;
699da3a660dSBarry Smith   /* do nondiagonal part */
700f830108cSBarry Smith   ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr);
701da3a660dSBarry Smith   /* send it on its way */
702537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
703da3a660dSBarry Smith   /* do local part */
704f830108cSBarry Smith   ierr = (*a->A->ops->multtrans)(a->A,xx,yy); CHKERRQ(ierr);
705da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
706da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
707da3a660dSBarry Smith   /* but is not perhaps always true. */
708537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
7093a40ed3dSBarry Smith   PetscFunctionReturn(0);
710da3a660dSBarry Smith }
711da3a660dSBarry Smith 
7125615d1e5SSatish Balay #undef __FUNC__
7135615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIAIJ"
7148f6be9afSLois Curfman McInnes int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
715da3a660dSBarry Smith {
716416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
717da3a660dSBarry Smith   int        ierr;
718da3a660dSBarry Smith 
7193a40ed3dSBarry Smith   PetscFunctionBegin;
720da3a660dSBarry Smith   /* do nondiagonal part */
721f830108cSBarry Smith   ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr);
722da3a660dSBarry Smith   /* send it on its way */
723537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
724da3a660dSBarry Smith   /* do local part */
725f830108cSBarry Smith   ierr = (*a->A->ops->multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr);
726da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
727da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
728da3a660dSBarry Smith   /* but is not perhaps always true. */
7290a198c4cSBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
7303a40ed3dSBarry Smith   PetscFunctionReturn(0);
731da3a660dSBarry Smith }
732da3a660dSBarry Smith 
7331eb62cbbSBarry Smith /*
7341eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
7351eb62cbbSBarry Smith    diagonal block
7361eb62cbbSBarry Smith */
7375615d1e5SSatish Balay #undef __FUNC__
7385615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIAIJ"
7398f6be9afSLois Curfman McInnes int MatGetDiagonal_MPIAIJ(Mat A,Vec v)
7401eb62cbbSBarry Smith {
7413a40ed3dSBarry Smith   int        ierr;
742416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
7433a40ed3dSBarry Smith 
7443a40ed3dSBarry Smith   PetscFunctionBegin;
745a8c6a408SBarry Smith   if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block");
7465baf8537SBarry Smith   if (a->rstart != a->cstart || a->rend != a->cend) {
747a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"row partition must equal col partition");
7483a40ed3dSBarry Smith   }
7493a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
7503a40ed3dSBarry Smith   PetscFunctionReturn(0);
7511eb62cbbSBarry Smith }
7521eb62cbbSBarry Smith 
7535615d1e5SSatish Balay #undef __FUNC__
7545615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIAIJ"
7558f6be9afSLois Curfman McInnes int MatScale_MPIAIJ(Scalar *aa,Mat A)
756052efed2SBarry Smith {
757052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
758052efed2SBarry Smith   int        ierr;
7593a40ed3dSBarry Smith 
7603a40ed3dSBarry Smith   PetscFunctionBegin;
761052efed2SBarry Smith   ierr = MatScale(aa,a->A); CHKERRQ(ierr);
762052efed2SBarry Smith   ierr = MatScale(aa,a->B); CHKERRQ(ierr);
7633a40ed3dSBarry Smith   PetscFunctionReturn(0);
764052efed2SBarry Smith }
765052efed2SBarry Smith 
7665615d1e5SSatish Balay #undef __FUNC__
767d4bb536fSBarry Smith #define __FUNC__ "MatDestroy_MPIAIJ"
768e1311b90SBarry Smith int MatDestroy_MPIAIJ(Mat mat)
7691eb62cbbSBarry Smith {
77044a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
7711eb62cbbSBarry Smith   int        ierr;
77283e2fdc7SBarry Smith 
7733a40ed3dSBarry Smith   PetscFunctionBegin;
77470429bc8SBarry Smith   if (--mat->refct > 0) PetscFunctionReturn(0);
77570429bc8SBarry Smith 
77670429bc8SBarry Smith   if (mat->mapping) {
77770429bc8SBarry Smith     ierr = ISLocalToGlobalMappingDestroy(mat->mapping); CHKERRQ(ierr);
77870429bc8SBarry Smith   }
77970429bc8SBarry Smith   if (mat->bmapping) {
78070429bc8SBarry Smith     ierr = ISLocalToGlobalMappingDestroy(mat->bmapping); CHKERRQ(ierr);
78170429bc8SBarry Smith   }
7823a40ed3dSBarry Smith #if defined(USE_PETSC_LOG)
783e1311b90SBarry Smith   PLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",aij->M,aij->N);
784a5a9c739SBarry Smith #endif
78583e2fdc7SBarry Smith   ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr);
7860452661fSBarry Smith   PetscFree(aij->rowners);
78778b31e54SBarry Smith   ierr = MatDestroy(aij->A); CHKERRQ(ierr);
78878b31e54SBarry Smith   ierr = MatDestroy(aij->B); CHKERRQ(ierr);
7890452661fSBarry Smith   if (aij->colmap) PetscFree(aij->colmap);
7900452661fSBarry Smith   if (aij->garray) PetscFree(aij->garray);
7911eb62cbbSBarry Smith   if (aij->lvec)   VecDestroy(aij->lvec);
792a56f8943SBarry Smith   if (aij->Mvctx)  VecScatterDestroy(aij->Mvctx);
7937a0afa10SBarry Smith   if (aij->rowvalues) PetscFree(aij->rowvalues);
7940452661fSBarry Smith   PetscFree(aij);
795a5a9c739SBarry Smith   PLogObjectDestroy(mat);
7960452661fSBarry Smith   PetscHeaderDestroy(mat);
7973a40ed3dSBarry Smith   PetscFunctionReturn(0);
7981eb62cbbSBarry Smith }
799ee50ffe9SBarry Smith 
8005615d1e5SSatish Balay #undef __FUNC__
801d4bb536fSBarry Smith #define __FUNC__ "MatView_MPIAIJ_Binary"
8028f6be9afSLois Curfman McInnes extern int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer)
8031eb62cbbSBarry Smith {
804416022c9SBarry Smith   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
805416022c9SBarry Smith   int         ierr;
806416022c9SBarry Smith 
8073a40ed3dSBarry Smith   PetscFunctionBegin;
80817699dbbSLois Curfman McInnes   if (aij->size == 1) {
809416022c9SBarry Smith     ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
810416022c9SBarry Smith   }
811a8c6a408SBarry Smith   else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported");
8123a40ed3dSBarry Smith   PetscFunctionReturn(0);
813416022c9SBarry Smith }
814416022c9SBarry Smith 
8155615d1e5SSatish Balay #undef __FUNC__
816d4bb536fSBarry Smith #define __FUNC__ "MatView_MPIAIJ_ASCIIorDraworMatlab"
8178f6be9afSLois Curfman McInnes extern int MatView_MPIAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer)
818416022c9SBarry Smith {
81944a69424SLois Curfman McInnes   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
820dbb450caSBarry Smith   Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data;
821a56f8943SBarry Smith   int         ierr, format,shift = C->indexshift,rank;
822d636dbe3SBarry Smith   FILE        *fd;
82319bcc07fSBarry Smith   ViewerType  vtype;
824416022c9SBarry Smith 
8253a40ed3dSBarry Smith   PetscFunctionBegin;
82619bcc07fSBarry Smith   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
82719bcc07fSBarry Smith   if (vtype  == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) {
82890ace30eSBarry Smith     ierr = ViewerGetFormat(viewer,&format);
8290a198c4cSBarry Smith     if (format == VIEWER_FORMAT_ASCII_INFO_LONG) {
8304e220ebcSLois Curfman McInnes       MatInfo info;
8314e220ebcSLois Curfman McInnes       int     flg;
832a56f8943SBarry Smith       MPI_Comm_rank(mat->comm,&rank);
83390ace30eSBarry Smith       ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
8344e220ebcSLois Curfman McInnes       ierr = MatGetInfo(mat,MAT_LOCAL,&info);
83595e01e2fSLois Curfman McInnes       ierr = OptionsHasName(PETSC_NULL,"-mat_aij_no_inode",&flg); CHKERRQ(ierr);
83677c4ece6SBarry Smith       PetscSequentialPhaseBegin(mat->comm,1);
83795e01e2fSLois Curfman McInnes       if (flg) fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d, not using I-node routines\n",
8384e220ebcSLois Curfman McInnes          rank,aij->m,(int)info.nz_used,(int)info.nz_allocated,(int)info.memory);
83995e01e2fSLois Curfman McInnes       else fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d, using I-node routines\n",
8404e220ebcSLois Curfman McInnes          rank,aij->m,(int)info.nz_used,(int)info.nz_allocated,(int)info.memory);
8414e220ebcSLois Curfman McInnes       ierr = MatGetInfo(aij->A,MAT_LOCAL,&info);
8424e220ebcSLois Curfman McInnes       fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used);
8434e220ebcSLois Curfman McInnes       ierr = MatGetInfo(aij->B,MAT_LOCAL,&info);
8444e220ebcSLois Curfman McInnes       fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used);
845a56f8943SBarry Smith       fflush(fd);
84677c4ece6SBarry Smith       PetscSequentialPhaseEnd(mat->comm,1);
847a40aa06bSLois Curfman McInnes       ierr = VecScatterView(aij->Mvctx,viewer); CHKERRQ(ierr);
8483a40ed3dSBarry Smith       PetscFunctionReturn(0);
8493a40ed3dSBarry Smith     } else if (format == VIEWER_FORMAT_ASCII_INFO) {
8503a40ed3dSBarry Smith       PetscFunctionReturn(0);
85108480c60SBarry Smith     }
852416022c9SBarry Smith   }
853416022c9SBarry Smith 
85419bcc07fSBarry Smith   if (vtype == DRAW_VIEWER) {
85519bcc07fSBarry Smith     Draw       draw;
85619bcc07fSBarry Smith     PetscTruth isnull;
85719bcc07fSBarry Smith     ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr);
8583a40ed3dSBarry Smith     ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
85919bcc07fSBarry Smith   }
86019bcc07fSBarry Smith 
86119bcc07fSBarry Smith   if (vtype == ASCII_FILE_VIEWER) {
86290ace30eSBarry Smith     ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
86377c4ece6SBarry Smith     PetscSequentialPhaseBegin(mat->comm,1);
864d13ab20cSBarry Smith     fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n",
86517699dbbSLois Curfman McInnes            aij->rank,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart,
8661eb62cbbSBarry Smith            aij->cend);
86778b31e54SBarry Smith     ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
86878b31e54SBarry Smith     ierr = MatView(aij->B,viewer); CHKERRQ(ierr);
869d13ab20cSBarry Smith     fflush(fd);
87077c4ece6SBarry Smith     PetscSequentialPhaseEnd(mat->comm,1);
8713a40ed3dSBarry Smith   } else {
872a56f8943SBarry Smith     int size = aij->size;
873a56f8943SBarry Smith     rank = aij->rank;
87417699dbbSLois Curfman McInnes     if (size == 1) {
87578b31e54SBarry Smith       ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
8763a40ed3dSBarry Smith     } else {
87795373324SBarry Smith       /* assemble the entire matrix onto first processor. */
87895373324SBarry Smith       Mat         A;
879ec8511deSBarry Smith       Mat_SeqAIJ *Aloc;
8802eb8c8abSBarry Smith       int         M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct;
88195373324SBarry Smith       Scalar      *a;
8822ee70a88SLois Curfman McInnes 
88317699dbbSLois Curfman McInnes       if (!rank) {
88455843e3eSBarry Smith         ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
8853a40ed3dSBarry Smith       } else {
88655843e3eSBarry Smith         ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
88795373324SBarry Smith       }
888464493b3SBarry Smith       PLogObjectParent(mat,A);
889416022c9SBarry Smith 
89095373324SBarry Smith       /* copy over the A part */
891ec8511deSBarry Smith       Aloc = (Mat_SeqAIJ*) aij->A->data;
8922ee70a88SLois Curfman McInnes       m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
89395373324SBarry Smith       row = aij->rstart;
894dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;}
89595373324SBarry Smith       for ( i=0; i<m; i++ ) {
896416022c9SBarry Smith         ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr);
89795373324SBarry Smith         row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
89895373324SBarry Smith       }
8992ee70a88SLois Curfman McInnes       aj = Aloc->j;
900dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;}
90195373324SBarry Smith 
90295373324SBarry Smith       /* copy over the B part */
903ec8511deSBarry Smith       Aloc = (Mat_SeqAIJ*) aij->B->data;
9042ee70a88SLois Curfman McInnes       m = Aloc->m;  ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
90595373324SBarry Smith       row = aij->rstart;
9060452661fSBarry Smith       ct = cols = (int *) PetscMalloc( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols);
907dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];}
90895373324SBarry Smith       for ( i=0; i<m; i++ ) {
909416022c9SBarry Smith         ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr);
91095373324SBarry Smith         row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
91195373324SBarry Smith       }
9120452661fSBarry Smith       PetscFree(ct);
9136d4a8577SBarry Smith       ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
9146d4a8577SBarry Smith       ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
91555843e3eSBarry Smith       /*
91655843e3eSBarry Smith          Everyone has to call to draw the matrix since the graphics waits are
91755843e3eSBarry Smith          synchronized across all processors that share the Draw object
91855843e3eSBarry Smith       */
91955843e3eSBarry Smith       if (!rank || vtype == DRAW_VIEWER) {
92078b31e54SBarry Smith         ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr);
92195373324SBarry Smith       }
92278b31e54SBarry Smith       ierr = MatDestroy(A); CHKERRQ(ierr);
92395373324SBarry Smith     }
92495373324SBarry Smith   }
9253a40ed3dSBarry Smith   PetscFunctionReturn(0);
9261eb62cbbSBarry Smith }
9271eb62cbbSBarry Smith 
9285615d1e5SSatish Balay #undef __FUNC__
929d4bb536fSBarry Smith #define __FUNC__ "MatView_MPIAIJ"
930e1311b90SBarry Smith int MatView_MPIAIJ(Mat mat,Viewer viewer)
931416022c9SBarry Smith {
932416022c9SBarry Smith   int         ierr;
93319bcc07fSBarry Smith   ViewerType  vtype;
934416022c9SBarry Smith 
9353a40ed3dSBarry Smith   PetscFunctionBegin;
93619bcc07fSBarry Smith   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
93719bcc07fSBarry Smith   if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER ||
93819bcc07fSBarry Smith       vtype == DRAW_VIEWER       || vtype == MATLAB_VIEWER) {
939d7e8b826SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr);
9405cd90555SBarry Smith   } else if (vtype == BINARY_FILE_VIEWER) {
9413a40ed3dSBarry Smith     ierr = MatView_MPIAIJ_Binary(mat,viewer);CHKERRQ(ierr);
9425cd90555SBarry Smith   } else {
9435cd90555SBarry Smith     SETERRQ(1,1,"Viewer type not supported by PETSc object");
944416022c9SBarry Smith   }
9453a40ed3dSBarry Smith   PetscFunctionReturn(0);
946416022c9SBarry Smith }
947416022c9SBarry Smith 
9481eb62cbbSBarry Smith /*
9491eb62cbbSBarry Smith     This has to provide several versions.
9501eb62cbbSBarry Smith 
9511eb62cbbSBarry Smith      2) a) use only local smoothing updating outer values only once.
9521eb62cbbSBarry Smith         b) local smoothing updating outer values each inner iteration
953d6dfbf8fSBarry Smith      3) color updating out values betwen colors.
9541eb62cbbSBarry Smith */
9555615d1e5SSatish Balay #undef __FUNC__
9565615d1e5SSatish Balay #define __FUNC__ "MatRelax_MPIAIJ"
9578f6be9afSLois Curfman McInnes int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag,
958dbb450caSBarry Smith                            double fshift,int its,Vec xx)
9598a729477SBarry Smith {
96044a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
961d6dfbf8fSBarry Smith   Mat        AA = mat->A, BB = mat->B;
962ec8511deSBarry Smith   Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data;
963c16cb8f2SBarry Smith   Scalar     *b,*x,*xs,*ls,d,*v,sum;
9646abc6512SBarry Smith   int        ierr,*idx, *diag;
965416022c9SBarry Smith   int        n = mat->n, m = mat->m, i,shift = A->indexshift;
9668a729477SBarry Smith 
9673a40ed3dSBarry Smith   PetscFunctionBegin;
968d6dfbf8fSBarry Smith   VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls);
969dbb450caSBarry Smith   xs = x + shift; /* shift by one for index start of 1 */
970dbb450caSBarry Smith   ls = ls + shift;
97183e2fdc7SBarry Smith   if (!A->diag) {ierr = MatMarkDiag_SeqAIJ(AA); CHKERRQ(ierr);}
972d6dfbf8fSBarry Smith   diag = A->diag;
973c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
974da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
975f830108cSBarry Smith       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,its,xx);CHKERRQ(ierr);
9763a40ed3dSBarry Smith       PetscFunctionReturn(0);
977da3a660dSBarry Smith     }
9783a40ed3dSBarry Smith     ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
9793a40ed3dSBarry Smith     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
980d6dfbf8fSBarry Smith     while (its--) {
981d6dfbf8fSBarry Smith       /* go down through the rows */
982d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
983d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
984dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
985dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
986d6dfbf8fSBarry Smith         sum  = b[i];
987d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
988dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
989d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
990dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
991dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
992d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
99355a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d;
994d6dfbf8fSBarry Smith       }
995d6dfbf8fSBarry Smith       /* come up through the rows */
996d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
997d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
998dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
999dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
1000d6dfbf8fSBarry Smith         sum  = b[i];
1001d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
1002dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
1003d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
1004dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
1005dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
1006d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
100755a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d;
1008d6dfbf8fSBarry Smith       }
1009d6dfbf8fSBarry Smith     }
10103a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP){
1011da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
1012f830108cSBarry Smith       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,its,xx);CHKERRQ(ierr);
10133a40ed3dSBarry Smith       PetscFunctionReturn(0);
1014da3a660dSBarry Smith     }
10153a40ed3dSBarry Smith     ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
10163a40ed3dSBarry Smith     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
1017d6dfbf8fSBarry Smith     while (its--) {
1018d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
1019d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
1020dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
1021dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
1022d6dfbf8fSBarry Smith         sum  = b[i];
1023d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
1024dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
1025d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
1026dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
1027dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
1028d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
102955a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d;
1030d6dfbf8fSBarry Smith       }
1031d6dfbf8fSBarry Smith     }
10323a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
1033da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
1034f830108cSBarry Smith       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,its,xx);CHKERRQ(ierr);
10353a40ed3dSBarry Smith       PetscFunctionReturn(0);
1036da3a660dSBarry Smith     }
103743a90d84SBarry Smith     ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,
103878b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
103943a90d84SBarry Smith     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,
104078b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
1041d6dfbf8fSBarry Smith     while (its--) {
1042d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
1043d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
1044dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
1045dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
1046d6dfbf8fSBarry Smith         sum  = b[i];
1047d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
1048dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
1049d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
1050dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
1051dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
1052d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
105355a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d;
1054d6dfbf8fSBarry Smith       }
1055d6dfbf8fSBarry Smith     }
10563a40ed3dSBarry Smith   } else {
1057a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"Parallel SOR not supported");
1058c16cb8f2SBarry Smith   }
10593a40ed3dSBarry Smith   PetscFunctionReturn(0);
10608a729477SBarry Smith }
1061a66be287SLois Curfman McInnes 
10625615d1e5SSatish Balay #undef __FUNC__
1063d4bb536fSBarry Smith #define __FUNC__ "MatGetInfo_MPIAIJ"
10648f6be9afSLois Curfman McInnes int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1065a66be287SLois Curfman McInnes {
1066a66be287SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1067a66be287SLois Curfman McInnes   Mat        A = mat->A, B = mat->B;
10684e220ebcSLois Curfman McInnes   int        ierr;
10694e220ebcSLois Curfman McInnes   double     isend[5], irecv[5];
1070a66be287SLois Curfman McInnes 
10713a40ed3dSBarry Smith   PetscFunctionBegin;
10724e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
10734e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info); CHKERRQ(ierr);
10744e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
10754e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
10764e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info); CHKERRQ(ierr);
10774e220ebcSLois Curfman McInnes   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
10784e220ebcSLois Curfman McInnes   isend[3] += info->memory;  isend[4] += info->mallocs;
1079a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
10804e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
10814e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
10824e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
10834e220ebcSLois Curfman McInnes     info->memory       = isend[3];
10844e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1085a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1086ca161407SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr);
10874e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
10884e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
10894e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
10904e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
10914e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1092a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1093ca161407SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr);
10944e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
10954e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
10964e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
10974e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
10984e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1099a66be287SLois Curfman McInnes   }
11004e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
11014e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
11024e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
11038d700155SBarry Smith   info->rows_global       = (double)mat->M;
11048d700155SBarry Smith   info->columns_global    = (double)mat->N;
11058d700155SBarry Smith   info->rows_local        = (double)mat->m;
11068d700155SBarry Smith   info->columns_local     = (double)mat->N;
11074e220ebcSLois Curfman McInnes 
11083a40ed3dSBarry Smith   PetscFunctionReturn(0);
1109a66be287SLois Curfman McInnes }
1110a66be287SLois Curfman McInnes 
11115615d1e5SSatish Balay #undef __FUNC__
1112d4bb536fSBarry Smith #define __FUNC__ "MatSetOption_MPIAIJ"
11138f6be9afSLois Curfman McInnes int MatSetOption_MPIAIJ(Mat A,MatOption op)
1114c74985f6SBarry Smith {
1115c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
1116c74985f6SBarry Smith 
11173a40ed3dSBarry Smith   PetscFunctionBegin;
11186d4a8577SBarry Smith   if (op == MAT_NO_NEW_NONZERO_LOCATIONS ||
11196d4a8577SBarry Smith       op == MAT_YES_NEW_NONZERO_LOCATIONS ||
11206da5968aSLois Curfman McInnes       op == MAT_COLUMNS_UNSORTED ||
1121c2653b3dSLois Curfman McInnes       op == MAT_COLUMNS_SORTED ||
112296854ed6SLois Curfman McInnes       op == MAT_NEW_NONZERO_ALLOCATION_ERROR ||
1123c2653b3dSLois Curfman McInnes       op == MAT_NEW_NONZERO_LOCATION_ERROR) {
1124b1fbbac0SLois Curfman McInnes         MatSetOption(a->A,op);
1125b1fbbac0SLois Curfman McInnes         MatSetOption(a->B,op);
1126b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROW_ORIENTED) {
1127aeafbbfcSLois Curfman McInnes     a->roworiented = 1;
1128c0bbcb79SLois Curfman McInnes     MatSetOption(a->A,op);
1129c0bbcb79SLois Curfman McInnes     MatSetOption(a->B,op);
1130b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROWS_SORTED ||
11316da5968aSLois Curfman McInnes              op == MAT_ROWS_UNSORTED ||
11326d4a8577SBarry Smith              op == MAT_SYMMETRIC ||
11336d4a8577SBarry Smith              op == MAT_STRUCTURALLY_SYMMETRIC ||
11346d4a8577SBarry Smith              op == MAT_YES_NEW_DIAGONALS)
1135981c4779SBarry Smith     PLogInfo(A,"MatSetOption_MPIAIJ:Option ignored\n");
11366d4a8577SBarry Smith   else if (op == MAT_COLUMN_ORIENTED) {
11374b0e389bSBarry Smith     a->roworiented = 0;
11384b0e389bSBarry Smith     MatSetOption(a->A,op);
11394b0e389bSBarry Smith     MatSetOption(a->B,op);
11402b362799SSatish Balay   } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) {
114190f02eecSBarry Smith     a->donotstash = 1;
11423a40ed3dSBarry Smith   } else if (op == MAT_NO_NEW_DIAGONALS){
11433a40ed3dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");
11443a40ed3dSBarry Smith   } else {
11453a40ed3dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"unknown option");
11463a40ed3dSBarry Smith   }
11473a40ed3dSBarry Smith   PetscFunctionReturn(0);
1148c74985f6SBarry Smith }
1149c74985f6SBarry Smith 
11505615d1e5SSatish Balay #undef __FUNC__
1151d4bb536fSBarry Smith #define __FUNC__ "MatGetSize_MPIAIJ"
11528f6be9afSLois Curfman McInnes int MatGetSize_MPIAIJ(Mat matin,int *m,int *n)
1153c74985f6SBarry Smith {
115444a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
11553a40ed3dSBarry Smith 
11563a40ed3dSBarry Smith   PetscFunctionBegin;
11570752156aSBarry Smith   if (m) *m = mat->M;
11580752156aSBarry Smith   if (n) *n = mat->N;
11593a40ed3dSBarry Smith   PetscFunctionReturn(0);
1160c74985f6SBarry Smith }
1161c74985f6SBarry Smith 
11625615d1e5SSatish Balay #undef __FUNC__
1163d4bb536fSBarry Smith #define __FUNC__ "MatGetLocalSize_MPIAIJ"
11648f6be9afSLois Curfman McInnes int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n)
1165c74985f6SBarry Smith {
116644a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
11673a40ed3dSBarry Smith 
11683a40ed3dSBarry Smith   PetscFunctionBegin;
11690752156aSBarry Smith   if (m) *m = mat->m;
1170f830108cSBarry Smith   if (n) *n = mat->n;
11713a40ed3dSBarry Smith   PetscFunctionReturn(0);
1172c74985f6SBarry Smith }
1173c74985f6SBarry Smith 
11745615d1e5SSatish Balay #undef __FUNC__
1175d4bb536fSBarry Smith #define __FUNC__ "MatGetOwnershipRange_MPIAIJ"
11768f6be9afSLois Curfman McInnes int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n)
1177c74985f6SBarry Smith {
117844a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
11793a40ed3dSBarry Smith 
11803a40ed3dSBarry Smith   PetscFunctionBegin;
1181c74985f6SBarry Smith   *m = mat->rstart; *n = mat->rend;
11823a40ed3dSBarry Smith   PetscFunctionReturn(0);
1183c74985f6SBarry Smith }
1184c74985f6SBarry Smith 
11856d84be18SBarry Smith extern int MatGetRow_SeqAIJ(Mat,int,int*,int**,Scalar**);
11866d84be18SBarry Smith extern int MatRestoreRow_SeqAIJ(Mat,int,int*,int**,Scalar**);
11876d84be18SBarry Smith 
11885615d1e5SSatish Balay #undef __FUNC__
11895615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIAIJ"
11906d84be18SBarry Smith int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v)
119139e00950SLois Curfman McInnes {
1192154123eaSLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
119370f0671dSBarry Smith   Scalar     *vworkA, *vworkB, **pvA, **pvB,*v_p;
1194154123eaSLois Curfman McInnes   int        i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart;
1195154123eaSLois Curfman McInnes   int        nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend;
119670f0671dSBarry Smith   int        *cmap, *idx_p;
119739e00950SLois Curfman McInnes 
11983a40ed3dSBarry Smith   PetscFunctionBegin;
1199a8c6a408SBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active");
12007a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
12017a0afa10SBarry Smith 
120270f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
12037a0afa10SBarry Smith     /*
12047a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
12057a0afa10SBarry Smith     */
12067a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *) mat->A->data,*Ba = (Mat_SeqAIJ *) mat->B->data;
1207c16cb8f2SBarry Smith     int     max = 1,m = mat->m,tmp;
1208c16cb8f2SBarry Smith     for ( i=0; i<m; i++ ) {
12097a0afa10SBarry Smith       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
12107a0afa10SBarry Smith       if (max < tmp) { max = tmp; }
12117a0afa10SBarry Smith     }
12127a0afa10SBarry Smith     mat->rowvalues = (Scalar *) PetscMalloc( max*(sizeof(int)+sizeof(Scalar)));
12137a0afa10SBarry Smith     CHKPTRQ(mat->rowvalues);
12147a0afa10SBarry Smith     mat->rowindices = (int *) (mat->rowvalues + max);
12157a0afa10SBarry Smith   }
12167a0afa10SBarry Smith 
1217a8c6a408SBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Only local rows")
1218abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
121939e00950SLois Curfman McInnes 
1220154123eaSLois Curfman McInnes   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1221154123eaSLois Curfman McInnes   if (!v)   {pvA = 0; pvB = 0;}
1222154123eaSLois Curfman McInnes   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1223f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
1224f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
1225154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1226154123eaSLois Curfman McInnes 
122770f0671dSBarry Smith   cmap  = mat->garray;
1228154123eaSLois Curfman McInnes   if (v  || idx) {
1229154123eaSLois Curfman McInnes     if (nztot) {
1230154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
123170f0671dSBarry Smith       int imark = -1;
1232154123eaSLois Curfman McInnes       if (v) {
123370f0671dSBarry Smith         *v = v_p = mat->rowvalues;
123439e00950SLois Curfman McInnes         for ( i=0; i<nzB; i++ ) {
123570f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart)   v_p[i] = vworkB[i];
1236154123eaSLois Curfman McInnes           else break;
1237154123eaSLois Curfman McInnes         }
1238154123eaSLois Curfman McInnes         imark = i;
123970f0671dSBarry Smith         for ( i=0; i<nzA; i++ )     v_p[imark+i] = vworkA[i];
124070f0671dSBarry Smith         for ( i=imark; i<nzB; i++ ) v_p[nzA+i]   = vworkB[i];
1241154123eaSLois Curfman McInnes       }
1242154123eaSLois Curfman McInnes       if (idx) {
124370f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
124470f0671dSBarry Smith         if (imark > -1) {
124570f0671dSBarry Smith           for ( i=0; i<imark; i++ ) {
124670f0671dSBarry Smith             idx_p[i] = cmap[cworkB[i]];
124770f0671dSBarry Smith           }
124870f0671dSBarry Smith         } else {
1249154123eaSLois Curfman McInnes           for ( i=0; i<nzB; i++ ) {
125070f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart)   idx_p[i] = cmap[cworkB[i]];
1251154123eaSLois Curfman McInnes             else break;
1252154123eaSLois Curfman McInnes           }
1253154123eaSLois Curfman McInnes           imark = i;
125470f0671dSBarry Smith         }
125570f0671dSBarry Smith         for ( i=0; i<nzA; i++ )     idx_p[imark+i] = cstart + cworkA[i];
125670f0671dSBarry Smith         for ( i=imark; i<nzB; i++ ) idx_p[nzA+i]   = cmap[cworkB[i]];
125739e00950SLois Curfman McInnes       }
125839e00950SLois Curfman McInnes     }
12591ca473b0SSatish Balay     else {
12601ca473b0SSatish Balay       if (idx) *idx = 0;
12611ca473b0SSatish Balay       if (v)   *v   = 0;
12621ca473b0SSatish Balay     }
1263154123eaSLois Curfman McInnes   }
126439e00950SLois Curfman McInnes   *nz = nztot;
1265f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
1266f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
12673a40ed3dSBarry Smith   PetscFunctionReturn(0);
126839e00950SLois Curfman McInnes }
126939e00950SLois Curfman McInnes 
12705615d1e5SSatish Balay #undef __FUNC__
1271d4bb536fSBarry Smith #define __FUNC__ "MatRestoreRow_MPIAIJ"
12726d84be18SBarry Smith int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v)
127339e00950SLois Curfman McInnes {
12747a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
12753a40ed3dSBarry Smith 
12763a40ed3dSBarry Smith   PetscFunctionBegin;
12777a0afa10SBarry Smith   if (aij->getrowactive == PETSC_FALSE) {
1278a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called");
12797a0afa10SBarry Smith   }
12807a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
12813a40ed3dSBarry Smith   PetscFunctionReturn(0);
128239e00950SLois Curfman McInnes }
128339e00950SLois Curfman McInnes 
12845615d1e5SSatish Balay #undef __FUNC__
12855615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIAIJ"
12868f6be9afSLois Curfman McInnes int MatNorm_MPIAIJ(Mat mat,NormType type,double *norm)
1287855ac2c5SLois Curfman McInnes {
1288855ac2c5SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
1289ec8511deSBarry Smith   Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data;
1290416022c9SBarry Smith   int        ierr, i, j, cstart = aij->cstart,shift = amat->indexshift;
1291416022c9SBarry Smith   double     sum = 0.0;
129204ca555eSLois Curfman McInnes   Scalar     *v;
129304ca555eSLois Curfman McInnes 
12943a40ed3dSBarry Smith   PetscFunctionBegin;
129517699dbbSLois Curfman McInnes   if (aij->size == 1) {
129614183eadSLois Curfman McInnes     ierr =  MatNorm(aij->A,type,norm); CHKERRQ(ierr);
129737fa93a5SLois Curfman McInnes   } else {
129804ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
129904ca555eSLois Curfman McInnes       v = amat->a;
130004ca555eSLois Curfman McInnes       for (i=0; i<amat->nz; i++ ) {
13013a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX)
1302e20fef11SSatish Balay         sum += PetscReal(PetscConj(*v)*(*v)); v++;
130304ca555eSLois Curfman McInnes #else
130404ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
130504ca555eSLois Curfman McInnes #endif
130604ca555eSLois Curfman McInnes       }
130704ca555eSLois Curfman McInnes       v = bmat->a;
130804ca555eSLois Curfman McInnes       for (i=0; i<bmat->nz; i++ ) {
13093a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX)
1310e20fef11SSatish Balay         sum += PetscReal(PetscConj(*v)*(*v)); v++;
131104ca555eSLois Curfman McInnes #else
131204ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
131304ca555eSLois Curfman McInnes #endif
131404ca555eSLois Curfman McInnes       }
1315ca161407SBarry Smith       ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr);
131604ca555eSLois Curfman McInnes       *norm = sqrt(*norm);
13173a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
131804ca555eSLois Curfman McInnes       double *tmp, *tmp2;
131904ca555eSLois Curfman McInnes       int    *jj, *garray = aij->garray;
1320758f045eSSatish Balay       tmp  = (double *) PetscMalloc( (aij->N+1)*sizeof(double) ); CHKPTRQ(tmp);
1321758f045eSSatish Balay       tmp2 = (double *) PetscMalloc( (aij->N+1)*sizeof(double) ); CHKPTRQ(tmp2);
1322cddf8d76SBarry Smith       PetscMemzero(tmp,aij->N*sizeof(double));
132304ca555eSLois Curfman McInnes       *norm = 0.0;
132404ca555eSLois Curfman McInnes       v = amat->a; jj = amat->j;
132504ca555eSLois Curfman McInnes       for ( j=0; j<amat->nz; j++ ) {
1326579c6b6fSBarry Smith         tmp[cstart + *jj++ + shift] += PetscAbsScalar(*v);  v++;
132704ca555eSLois Curfman McInnes       }
132804ca555eSLois Curfman McInnes       v = bmat->a; jj = bmat->j;
132904ca555eSLois Curfman McInnes       for ( j=0; j<bmat->nz; j++ ) {
1330579c6b6fSBarry Smith         tmp[garray[*jj++ + shift]] += PetscAbsScalar(*v); v++;
133104ca555eSLois Curfman McInnes       }
1332ca161407SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr);
133304ca555eSLois Curfman McInnes       for ( j=0; j<aij->N; j++ ) {
133404ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
133504ca555eSLois Curfman McInnes       }
13360452661fSBarry Smith       PetscFree(tmp); PetscFree(tmp2);
13373a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1338515d9167SLois Curfman McInnes       double ntemp = 0.0;
133904ca555eSLois Curfman McInnes       for ( j=0; j<amat->m; j++ ) {
1340dbb450caSBarry Smith         v = amat->a + amat->i[j] + shift;
134104ca555eSLois Curfman McInnes         sum = 0.0;
134204ca555eSLois Curfman McInnes         for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) {
1343cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
134404ca555eSLois Curfman McInnes         }
1345dbb450caSBarry Smith         v = bmat->a + bmat->i[j] + shift;
134604ca555eSLois Curfman McInnes         for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) {
1347cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
134804ca555eSLois Curfman McInnes         }
1349515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
135004ca555eSLois Curfman McInnes       }
1351ca161407SBarry Smith       ierr = MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,mat->comm);CHKERRQ(ierr);
1352ca161407SBarry Smith     } else {
1353a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"No support for two norm");
135404ca555eSLois Curfman McInnes     }
135537fa93a5SLois Curfman McInnes   }
13563a40ed3dSBarry Smith   PetscFunctionReturn(0);
1357855ac2c5SLois Curfman McInnes }
1358855ac2c5SLois Curfman McInnes 
13595615d1e5SSatish Balay #undef __FUNC__
13605615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIAIJ"
13618f6be9afSLois Curfman McInnes int MatTranspose_MPIAIJ(Mat A,Mat *matout)
1362b7c46309SBarry Smith {
1363b7c46309SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
1364dbb450caSBarry Smith   Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data;
1365416022c9SBarry Smith   int        ierr,shift = Aloc->indexshift;
1366b7c46309SBarry Smith   int        M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct;
13673a40ed3dSBarry Smith   Mat        B;
1368b7c46309SBarry Smith   Scalar     *array;
1369b7c46309SBarry Smith 
13703a40ed3dSBarry Smith   PetscFunctionBegin;
1371d4bb536fSBarry Smith   if (matout == PETSC_NULL && M != N) {
1372a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place");
1373d4bb536fSBarry Smith   }
1374d4bb536fSBarry Smith 
1375d4bb536fSBarry Smith   ierr = MatCreateMPIAIJ(A->comm,a->n,a->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);CHKERRQ(ierr);
1376b7c46309SBarry Smith 
1377b7c46309SBarry Smith   /* copy over the A part */
1378ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*) a->A->data;
1379b7c46309SBarry Smith   m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1380b7c46309SBarry Smith   row = a->rstart;
1381dbb450caSBarry Smith   for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;}
1382b7c46309SBarry Smith   for ( i=0; i<m; i++ ) {
1383416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1384b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
1385b7c46309SBarry Smith   }
1386b7c46309SBarry Smith   aj = Aloc->j;
13874af08d9eSBarry Smith   for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= a->cstart + shift;}
1388b7c46309SBarry Smith 
1389b7c46309SBarry Smith   /* copy over the B part */
1390ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*) a->B->data;
1391b7c46309SBarry Smith   m = Aloc->m;  ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1392b7c46309SBarry Smith   row = a->rstart;
13930452661fSBarry Smith   ct = cols = (int *) PetscMalloc( (1+ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols);
1394dbb450caSBarry Smith   for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];}
1395b7c46309SBarry Smith   for ( i=0; i<m; i++ ) {
1396416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1397b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
1398b7c46309SBarry Smith   }
13990452661fSBarry Smith   PetscFree(ct);
14006d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
14016d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
14023638b69dSLois Curfman McInnes   if (matout != PETSC_NULL) {
14030de55854SLois Curfman McInnes     *matout = B;
14040de55854SLois Curfman McInnes   } else {
1405f830108cSBarry Smith     PetscOps       *Abops;
1406f830108cSBarry Smith     struct _MatOps *Aops;
1407f830108cSBarry Smith 
14080de55854SLois Curfman McInnes     /* This isn't really an in-place transpose .... but free data structures from a */
14090452661fSBarry Smith     PetscFree(a->rowners);
14100de55854SLois Curfman McInnes     ierr = MatDestroy(a->A); CHKERRQ(ierr);
14110de55854SLois Curfman McInnes     ierr = MatDestroy(a->B); CHKERRQ(ierr);
14120452661fSBarry Smith     if (a->colmap) PetscFree(a->colmap);
14130452661fSBarry Smith     if (a->garray) PetscFree(a->garray);
14140de55854SLois Curfman McInnes     if (a->lvec) VecDestroy(a->lvec);
1415a56f8943SBarry Smith     if (a->Mvctx) VecScatterDestroy(a->Mvctx);
14160452661fSBarry Smith     PetscFree(a);
1417f830108cSBarry Smith 
1418f830108cSBarry Smith     /*
1419f830108cSBarry Smith        This is horrible, horrible code. We need to keep the
1420f830108cSBarry Smith       A pointers for the bops and ops but copy everything
1421f830108cSBarry Smith       else from C.
1422f830108cSBarry Smith     */
1423f830108cSBarry Smith     Abops = A->bops;
1424f830108cSBarry Smith     Aops  = A->ops;
1425f09e8eb9SSatish Balay     PetscMemcpy(A,B,sizeof(struct _p_Mat));
1426f830108cSBarry Smith     A->bops = Abops;
1427f830108cSBarry Smith     A->ops  = Aops;
14280452661fSBarry Smith     PetscHeaderDestroy(B);
14290de55854SLois Curfman McInnes   }
14303a40ed3dSBarry Smith   PetscFunctionReturn(0);
1431b7c46309SBarry Smith }
1432b7c46309SBarry Smith 
14335615d1e5SSatish Balay #undef __FUNC__
14345615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIAIJ"
14354b967eb1SSatish Balay int MatDiagonalScale_MPIAIJ(Mat mat,Vec ll,Vec rr)
1436a008b906SSatish Balay {
14374b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
14384b967eb1SSatish Balay   Mat a = aij->A, b = aij->B;
1439a008b906SSatish Balay   int ierr,s1,s2,s3;
1440a008b906SSatish Balay 
14413a40ed3dSBarry Smith   PetscFunctionBegin;
14424b967eb1SSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3); CHKERRQ(ierr);
14434b967eb1SSatish Balay   if (rr) {
1444e1311b90SBarry Smith     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
1445a8c6a408SBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,0,"right vector non-conforming local size");
14464b967eb1SSatish Balay     /* Overlap communication with computation. */
144743a90d84SBarry Smith     ierr = VecScatterBegin(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx); CHKERRQ(ierr);
1448a008b906SSatish Balay   }
14494b967eb1SSatish Balay   if (ll) {
1450e1311b90SBarry Smith     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
1451a8c6a408SBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"left vector non-conforming local size");
1452f830108cSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,0); CHKERRQ(ierr);
14534b967eb1SSatish Balay   }
14544b967eb1SSatish Balay   /* scale  the diagonal block */
1455f830108cSBarry Smith   ierr = (*a->ops->diagonalscale)(a,ll,rr); CHKERRQ(ierr);
14564b967eb1SSatish Balay 
14574b967eb1SSatish Balay   if (rr) {
14584b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
145943a90d84SBarry Smith     ierr = VecScatterEnd(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx); CHKERRQ(ierr);
1460f830108cSBarry Smith     ierr = (*b->ops->diagonalscale)(b,0,aij->lvec); CHKERRQ(ierr);
14614b967eb1SSatish Balay   }
14624b967eb1SSatish Balay 
14633a40ed3dSBarry Smith   PetscFunctionReturn(0);
1464a008b906SSatish Balay }
1465a008b906SSatish Balay 
1466a008b906SSatish Balay 
1467682d7d0cSBarry Smith extern int MatPrintHelp_SeqAIJ(Mat);
14685615d1e5SSatish Balay #undef __FUNC__
1469d4bb536fSBarry Smith #define __FUNC__ "MatPrintHelp_MPIAIJ"
14708f6be9afSLois Curfman McInnes int MatPrintHelp_MPIAIJ(Mat A)
1471682d7d0cSBarry Smith {
1472682d7d0cSBarry Smith   Mat_MPIAIJ *a   = (Mat_MPIAIJ*) A->data;
14733a40ed3dSBarry Smith   int        ierr;
1474682d7d0cSBarry Smith 
14753a40ed3dSBarry Smith   PetscFunctionBegin;
14763a40ed3dSBarry Smith   if (!a->rank) {
14773a40ed3dSBarry Smith     ierr = MatPrintHelp_SeqAIJ(a->A);CHKERRQ(ierr);
14783a40ed3dSBarry Smith   }
14793a40ed3dSBarry Smith   PetscFunctionReturn(0);
1480682d7d0cSBarry Smith }
1481682d7d0cSBarry Smith 
14825615d1e5SSatish Balay #undef __FUNC__
1483d4bb536fSBarry Smith #define __FUNC__ "MatGetBlockSize_MPIAIJ"
14848f6be9afSLois Curfman McInnes int MatGetBlockSize_MPIAIJ(Mat A,int *bs)
14855a838052SSatish Balay {
14863a40ed3dSBarry Smith   PetscFunctionBegin;
14875a838052SSatish Balay   *bs = 1;
14883a40ed3dSBarry Smith   PetscFunctionReturn(0);
14895a838052SSatish Balay }
14905615d1e5SSatish Balay #undef __FUNC__
1491d4bb536fSBarry Smith #define __FUNC__ "MatSetUnfactored_MPIAIJ"
14928f6be9afSLois Curfman McInnes int MatSetUnfactored_MPIAIJ(Mat A)
1493bb5a7306SBarry Smith {
1494bb5a7306SBarry Smith   Mat_MPIAIJ *a   = (Mat_MPIAIJ*) A->data;
1495bb5a7306SBarry Smith   int        ierr;
14963a40ed3dSBarry Smith 
14973a40ed3dSBarry Smith   PetscFunctionBegin;
1498bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A); CHKERRQ(ierr);
14993a40ed3dSBarry Smith   PetscFunctionReturn(0);
1500bb5a7306SBarry Smith }
1501bb5a7306SBarry Smith 
1502d4bb536fSBarry Smith #undef __FUNC__
1503d4bb536fSBarry Smith #define __FUNC__ "MatEqual_MPIAIJ"
1504d4bb536fSBarry Smith int MatEqual_MPIAIJ(Mat A, Mat B, PetscTruth *flag)
1505d4bb536fSBarry Smith {
1506d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *) B->data,*matA = (Mat_MPIAIJ *) A->data;
1507d4bb536fSBarry Smith   Mat        a, b, c, d;
1508d4bb536fSBarry Smith   PetscTruth flg;
1509d4bb536fSBarry Smith   int        ierr;
1510d4bb536fSBarry Smith 
15113a40ed3dSBarry Smith   PetscFunctionBegin;
1512a8c6a408SBarry Smith   if (B->type != MATMPIAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,0,"Matrices must be same type");
1513d4bb536fSBarry Smith   a = matA->A; b = matA->B;
1514d4bb536fSBarry Smith   c = matB->A; d = matB->B;
1515d4bb536fSBarry Smith 
1516d4bb536fSBarry Smith   ierr = MatEqual(a, c, &flg); CHKERRQ(ierr);
1517d4bb536fSBarry Smith   if (flg == PETSC_TRUE) {
1518d4bb536fSBarry Smith     ierr = MatEqual(b, d, &flg); CHKERRQ(ierr);
1519d4bb536fSBarry Smith   }
1520ca161407SBarry Smith   ierr = MPI_Allreduce(&flg, flag, 1, MPI_INT, MPI_LAND, A->comm);CHKERRQ(ierr);
15213a40ed3dSBarry Smith   PetscFunctionReturn(0);
1522d4bb536fSBarry Smith }
1523d4bb536fSBarry Smith 
15248f6be9afSLois Curfman McInnes extern int MatConvertSameType_MPIAIJ(Mat,Mat *,int);
15252f86bd48SSatish Balay extern int MatIncreaseOverlap_MPIAIJ(Mat , int, IS *, int);
15260a198c4cSBarry Smith extern int MatFDColoringCreate_MPIAIJ(Mat,ISColoring,MatFDColoring);
15270a198c4cSBarry Smith extern int MatGetSubMatrices_MPIAIJ (Mat ,int , IS *,IS *,MatGetSubMatrixCall,Mat **);
15286a6a5d1dSBarry Smith extern int MatGetSubMatrix_MPIAIJ (Mat ,IS,IS,int,MatGetSubMatrixCall,Mat *);
152900e6dbe6SBarry Smith 
15308a729477SBarry Smith /* -------------------------------------------------------------------*/
15312ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ,
153239e00950SLois Curfman McInnes        MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ,
153344a69424SLois Curfman McInnes        MatMult_MPIAIJ,MatMultAdd_MPIAIJ,
153444a69424SLois Curfman McInnes        MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ,
153536ce4990SBarry Smith        0,0,
153636ce4990SBarry Smith        0,0,
153736ce4990SBarry Smith        0,0,
153844a69424SLois Curfman McInnes        MatRelax_MPIAIJ,
1539b7c46309SBarry Smith        MatTranspose_MPIAIJ,
1540d4bb536fSBarry Smith        MatGetInfo_MPIAIJ,MatEqual_MPIAIJ,
1541a008b906SSatish Balay        MatGetDiagonal_MPIAIJ,MatDiagonalScale_MPIAIJ,MatNorm_MPIAIJ,
1542ee50ffe9SBarry Smith        MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ,
15431eb62cbbSBarry Smith        0,
1544299609e3SLois Curfman McInnes        MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ,
154536ce4990SBarry Smith        0,0,0,0,
1546d1710a03SLois Curfman McInnes        MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ,
154736ce4990SBarry Smith        0,0,
154894a9d846SBarry Smith        0,0,MatConvertSameType_MPIAIJ,0,0,
1549b49de8d1SLois Curfman McInnes        0,0,0,
1550598137ffSSatish Balay        MatGetSubMatrices_MPIAIJ,MatIncreaseOverlap_MPIAIJ,MatGetValues_MPIAIJ,0,
1551052efed2SBarry Smith        MatPrintHelp_MPIAIJ,
15523b2fbd54SBarry Smith        MatScale_MPIAIJ,0,0,0,
15530a198c4cSBarry Smith        MatGetBlockSize_MPIAIJ,0,0,0,0,
155400e6dbe6SBarry Smith        MatFDColoringCreate_MPIAIJ,0,MatSetUnfactored_MPIAIJ,
1555ca161407SBarry Smith        0,0,MatGetSubMatrix_MPIAIJ};
155636ce4990SBarry Smith 
15578a729477SBarry Smith 
15585615d1e5SSatish Balay #undef __FUNC__
15595615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIAIJ"
15601987afe7SBarry Smith /*@C
1561ff756334SLois Curfman McInnes    MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format
15623a511b96SLois Curfman McInnes    (the default parallel PETSc format).  For good matrix assembly performance
15633a511b96SLois Curfman McInnes    the user should preallocate the matrix storage by setting the parameters
15643a511b96SLois Curfman McInnes    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
15653a511b96SLois Curfman McInnes    performance can be increased by more than a factor of 50.
15668a729477SBarry Smith 
1567db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1568db81eaa0SLois Curfman McInnes 
15698a729477SBarry Smith    Input Parameters:
1570db81eaa0SLois Curfman McInnes +  comm - MPI communicator
15717d3e4905SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
157292e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
157392e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
15741a3896d6SBarry Smith .  n - This value should be the same as the local size used in creating the
15751a3896d6SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
15761a3896d6SBarry Smith        calculated if N is given) For square matrices n is almost always m.
157760d380a7SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
157860d380a7SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1579ab693e5aSLois Curfman McInnes .  d_nz - number of nonzeros per row in diagonal portion of local submatrix
1580ff756334SLois Curfman McInnes            (same for all local rows)
15812bd5e0b2SLois Curfman McInnes .  d_nzz - array containing the number of nonzeros in the various rows of the
158292e8d321SLois Curfman McInnes            diagonal portion of the local submatrix (possibly different for each row)
15832bd5e0b2SLois Curfman McInnes            or PETSC_NULL. You must leave room for the diagonal entry even if
15842bd5e0b2SLois Curfman McInnes            it is zero.
15852bd5e0b2SLois Curfman McInnes .  o_nz - number of nonzeros per row in the off-diagonal portion of local
1586ab693e5aSLois Curfman McInnes            submatrix (same for all local rows).
1587db81eaa0SLois Curfman McInnes -  o_nzz - array containing the number of nonzeros in the various rows of the
15882bd5e0b2SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
15892bd5e0b2SLois Curfman McInnes            each row) or PETSC_NULL.
15908a729477SBarry Smith 
1591ff756334SLois Curfman McInnes    Output Parameter:
159244cd7ae7SLois Curfman McInnes .  A - the matrix
15938a729477SBarry Smith 
1594b259b22eSLois Curfman McInnes    Notes:
1595be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1596be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
1597be79a94dSBarry Smith 
1598ff756334SLois Curfman McInnes    The AIJ format (also called the Yale sparse matrix format or
1599ff756334SLois Curfman McInnes    compressed row storage), is fully compatible with standard Fortran 77
16000002213bSLois Curfman McInnes    storage.  That is, the stored row and column indices can begin at
16010002213bSLois Curfman McInnes    either one (as in Fortran) or zero.  See the users manual for details.
1602ff756334SLois Curfman McInnes 
1603ff756334SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
1604ff756334SLois Curfman McInnes    (possibly both).
1605ff756334SLois Curfman McInnes 
16065511cfe3SLois Curfman McInnes    By default, this format uses inodes (identical nodes) when possible.
16075511cfe3SLois Curfman McInnes    We search for consecutive rows with the same nonzero structure, thereby
16085511cfe3SLois Curfman McInnes    reusing matrix information to achieve increased efficiency.
16095511cfe3SLois Curfman McInnes 
16105511cfe3SLois Curfman McInnes    Options Database Keys:
1611db81eaa0SLois Curfman McInnes +  -mat_aij_no_inode  - Do not use inodes
1612db81eaa0SLois Curfman McInnes .  -mat_aij_inode_limit <limit> - Sets inode limit (max limit=5)
1613db81eaa0SLois Curfman McInnes -  -mat_aij_oneindex - Internally use indexing starting at 1
1614db81eaa0SLois Curfman McInnes         rather than 0.  Note that when calling MatSetValues(),
1615db81eaa0SLois Curfman McInnes         the user still MUST index entries starting at 0!
16165511cfe3SLois Curfman McInnes 
1617e0245417SLois Curfman McInnes    Storage Information:
1618e0245417SLois Curfman McInnes    For a square global matrix we define each processor's diagonal portion
1619e0245417SLois Curfman McInnes    to be its local rows and the corresponding columns (a square submatrix);
1620e0245417SLois Curfman McInnes    each processor's off-diagonal portion encompasses the remainder of the
1621e0245417SLois Curfman McInnes    local matrix (a rectangular submatrix).
1622e0245417SLois Curfman McInnes 
1623e0245417SLois Curfman McInnes    The user can specify preallocated storage for the diagonal part of
16245ace5be8SLois Curfman McInnes    the local submatrix with either d_nz or d_nnz (not both).  Set
16255ace5be8SLois Curfman McInnes    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
16265ace5be8SLois Curfman McInnes    memory allocation.  Likewise, specify preallocated storage for the
16275ace5be8SLois Curfman McInnes    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1628ff756334SLois Curfman McInnes 
16295511cfe3SLois Curfman McInnes    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
16305511cfe3SLois Curfman McInnes    the figure below we depict these three local rows and all columns (0-11).
16312191d07cSBarry Smith 
1632db81eaa0SLois Curfman McInnes .vb
1633db81eaa0SLois Curfman McInnes              0 1 2 3 4 5 6 7 8 9 10 11
1634db81eaa0SLois Curfman McInnes             -------------------
1635db81eaa0SLois Curfman McInnes      row 3  |  o o o d d d o o o o o o
1636db81eaa0SLois Curfman McInnes      row 4  |  o o o d d d o o o o o o
1637db81eaa0SLois Curfman McInnes      row 5  |  o o o d d d o o o o o o
1638db81eaa0SLois Curfman McInnes             -------------------
1639db81eaa0SLois Curfman McInnes .ve
1640b810aeb4SBarry Smith 
16415511cfe3SLois Curfman McInnes    Thus, any entries in the d locations are stored in the d (diagonal)
16425511cfe3SLois Curfman McInnes    submatrix, and any entries in the o locations are stored in the
16435511cfe3SLois Curfman McInnes    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
16445511cfe3SLois Curfman McInnes    stored simply in the MATSEQAIJ format for compressed row storage.
16455511cfe3SLois Curfman McInnes 
16465511cfe3SLois Curfman McInnes    Now d_nz should indicate the number of nonzeros per row in the d matrix,
16475511cfe3SLois Curfman McInnes    and o_nz should indicate the number of nonzeros per row in the o matrix.
16485511cfe3SLois Curfman McInnes    In general, for PDE problems in which most nonzeros are near the diagonal,
16493d323bbdSBarry Smith    one expects d_nz >> o_nz. For large problems you MUST preallocate memory
165092e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
16516da5968aSLois Curfman McInnes    matrices.
16523a511b96SLois Curfman McInnes 
1653dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel
1654ff756334SLois Curfman McInnes 
1655fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues()
16568a729477SBarry Smith @*/
1657e1311b90SBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
16588a729477SBarry Smith {
165944cd7ae7SLois Curfman McInnes   Mat          B;
166044cd7ae7SLois Curfman McInnes   Mat_MPIAIJ   *b;
166136ce4990SBarry Smith   int          ierr, i,sum[2],work[2],size;
1662416022c9SBarry Smith 
16633a40ed3dSBarry Smith   PetscFunctionBegin;
16643914022bSBarry Smith   MPI_Comm_size(comm,&size);
16653914022bSBarry Smith   if (size == 1) {
16663914022bSBarry Smith     if (M == PETSC_DECIDE) M = m;
16673914022bSBarry Smith     if (N == PETSC_DECIDE) N = n;
16683914022bSBarry Smith     ierr = MatCreateSeqAIJ(comm,M,N,d_nz,d_nnz,A); CHKERRQ(ierr);
16693a40ed3dSBarry Smith     PetscFunctionReturn(0);
16703914022bSBarry Smith   }
16713914022bSBarry Smith 
167244cd7ae7SLois Curfman McInnes   *A = 0;
1673f830108cSBarry Smith   PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIAIJ,comm,MatDestroy,MatView);
167444cd7ae7SLois Curfman McInnes   PLogObjectCreate(B);
167544cd7ae7SLois Curfman McInnes   B->data       = (void *) (b = PetscNew(Mat_MPIAIJ)); CHKPTRQ(b);
167644cd7ae7SLois Curfman McInnes   PetscMemzero(b,sizeof(Mat_MPIAIJ));
1677f830108cSBarry Smith   PetscMemcpy(B->ops,&MatOps,sizeof(struct _MatOps));
1678e1311b90SBarry Smith   B->ops->destroy    = MatDestroy_MPIAIJ;
1679e1311b90SBarry Smith   B->ops->view       = MatView_MPIAIJ;
168044cd7ae7SLois Curfman McInnes   B->factor     = 0;
168144cd7ae7SLois Curfman McInnes   B->assembled  = PETSC_FALSE;
168290f02eecSBarry Smith   B->mapping    = 0;
1683d6dfbf8fSBarry Smith 
168447794344SBarry Smith   B->insertmode = NOT_SET_VALUES;
16859eb4d147SSatish Balay   b->size       = size;
168644cd7ae7SLois Curfman McInnes   MPI_Comm_rank(comm,&b->rank);
16871eb62cbbSBarry Smith 
16883a40ed3dSBarry Smith   if (m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) {
1689a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz");
16903a40ed3dSBarry Smith   }
16911987afe7SBarry Smith 
1692dbd7a890SLois Curfman McInnes   if (M == PETSC_DECIDE || N == PETSC_DECIDE) {
16931eb62cbbSBarry Smith     work[0] = m; work[1] = n;
1694ca161407SBarry Smith     ierr = MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );CHKERRQ(ierr);
1695dbd7a890SLois Curfman McInnes     if (M == PETSC_DECIDE) M = sum[0];
1696dbd7a890SLois Curfman McInnes     if (N == PETSC_DECIDE) N = sum[1];
16971eb62cbbSBarry Smith   }
169844cd7ae7SLois Curfman McInnes   if (m == PETSC_DECIDE) {m = M/b->size + ((M % b->size) > b->rank);}
169944cd7ae7SLois Curfman McInnes   if (n == PETSC_DECIDE) {n = N/b->size + ((N % b->size) > b->rank);}
170044cd7ae7SLois Curfman McInnes   b->m = m; B->m = m;
170144cd7ae7SLois Curfman McInnes   b->n = n; B->n = n;
170244cd7ae7SLois Curfman McInnes   b->N = N; B->N = N;
170344cd7ae7SLois Curfman McInnes   b->M = M; B->M = M;
17041eb62cbbSBarry Smith 
17051eb62cbbSBarry Smith   /* build local table of row and column ownerships */
170644cd7ae7SLois Curfman McInnes   b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners);
1707f09e8eb9SSatish Balay   PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIAIJ));
1708603f58a4SSatish Balay   b->cowners = b->rowners + b->size + 2;
1709ca161407SBarry Smith   ierr = MPI_Allgather(&m,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
171044cd7ae7SLois Curfman McInnes   b->rowners[0] = 0;
171144cd7ae7SLois Curfman McInnes   for ( i=2; i<=b->size; i++ ) {
171244cd7ae7SLois Curfman McInnes     b->rowners[i] += b->rowners[i-1];
17138a729477SBarry Smith   }
171444cd7ae7SLois Curfman McInnes   b->rstart = b->rowners[b->rank];
171544cd7ae7SLois Curfman McInnes   b->rend   = b->rowners[b->rank+1];
1716ca161407SBarry Smith   ierr = MPI_Allgather(&n,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
171744cd7ae7SLois Curfman McInnes   b->cowners[0] = 0;
171844cd7ae7SLois Curfman McInnes   for ( i=2; i<=b->size; i++ ) {
171944cd7ae7SLois Curfman McInnes     b->cowners[i] += b->cowners[i-1];
17208a729477SBarry Smith   }
172144cd7ae7SLois Curfman McInnes   b->cstart = b->cowners[b->rank];
172244cd7ae7SLois Curfman McInnes   b->cend   = b->cowners[b->rank+1];
17238a729477SBarry Smith 
17245ace5be8SLois Curfman McInnes   if (d_nz == PETSC_DEFAULT) d_nz = 5;
1725029af93fSBarry Smith   ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr);
172644cd7ae7SLois Curfman McInnes   PLogObjectParent(B,b->A);
17277b8455f0SLois Curfman McInnes   if (o_nz == PETSC_DEFAULT) o_nz = 0;
1728029af93fSBarry Smith   ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr);
172944cd7ae7SLois Curfman McInnes   PLogObjectParent(B,b->B);
17308a729477SBarry Smith 
17311eb62cbbSBarry Smith   /* build cache for off array entries formed */
173244cd7ae7SLois Curfman McInnes   ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr);
173390f02eecSBarry Smith   b->donotstash  = 0;
173444cd7ae7SLois Curfman McInnes   b->colmap      = 0;
173544cd7ae7SLois Curfman McInnes   b->garray      = 0;
173644cd7ae7SLois Curfman McInnes   b->roworiented = 1;
17378a729477SBarry Smith 
17381eb62cbbSBarry Smith   /* stuff used for matrix vector multiply */
173944cd7ae7SLois Curfman McInnes   b->lvec      = 0;
174044cd7ae7SLois Curfman McInnes   b->Mvctx     = 0;
17418a729477SBarry Smith 
17427a0afa10SBarry Smith   /* stuff for MatGetRow() */
174344cd7ae7SLois Curfman McInnes   b->rowindices   = 0;
174444cd7ae7SLois Curfman McInnes   b->rowvalues    = 0;
174544cd7ae7SLois Curfman McInnes   b->getrowactive = PETSC_FALSE;
17467a0afa10SBarry Smith 
174744cd7ae7SLois Curfman McInnes   *A = B;
17483a40ed3dSBarry Smith   PetscFunctionReturn(0);
1749d6dfbf8fSBarry Smith }
1750c74985f6SBarry Smith 
17515615d1e5SSatish Balay #undef __FUNC__
17525615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIAIJ"
17538f6be9afSLois Curfman McInnes int MatConvertSameType_MPIAIJ(Mat matin,Mat *newmat,int cpvalues)
1754d6dfbf8fSBarry Smith {
1755d6dfbf8fSBarry Smith   Mat        mat;
1756416022c9SBarry Smith   Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data;
1757a1b97e82SLois Curfman McInnes   int        ierr, len=0, flg;
1758d6dfbf8fSBarry Smith 
17593a40ed3dSBarry Smith   PetscFunctionBegin;
1760416022c9SBarry Smith   *newmat       = 0;
1761f830108cSBarry Smith   PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIAIJ,matin->comm,MatDestroy,MatView);
1762a5a9c739SBarry Smith   PLogObjectCreate(mat);
17630452661fSBarry Smith   mat->data       = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a);
1764f830108cSBarry Smith   PetscMemcpy(mat->ops,&MatOps,sizeof(struct _MatOps));
1765e1311b90SBarry Smith   mat->ops->destroy    = MatDestroy_MPIAIJ;
1766e1311b90SBarry Smith   mat->ops->view       = MatView_MPIAIJ;
1767d6dfbf8fSBarry Smith   mat->factor     = matin->factor;
1768c456f294SBarry Smith   mat->assembled  = PETSC_TRUE;
1769d6dfbf8fSBarry Smith 
177044cd7ae7SLois Curfman McInnes   a->m = mat->m   = oldmat->m;
177144cd7ae7SLois Curfman McInnes   a->n = mat->n   = oldmat->n;
177244cd7ae7SLois Curfman McInnes   a->M = mat->M   = oldmat->M;
177344cd7ae7SLois Curfman McInnes   a->N = mat->N   = oldmat->N;
1774d6dfbf8fSBarry Smith 
1775416022c9SBarry Smith   a->rstart       = oldmat->rstart;
1776416022c9SBarry Smith   a->rend         = oldmat->rend;
1777416022c9SBarry Smith   a->cstart       = oldmat->cstart;
1778416022c9SBarry Smith   a->cend         = oldmat->cend;
177917699dbbSLois Curfman McInnes   a->size         = oldmat->size;
178017699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
178147794344SBarry Smith   mat->insertmode = NOT_SET_VALUES;
1782bcd2baecSBarry Smith   a->rowvalues    = 0;
1783bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
1784d6dfbf8fSBarry Smith 
1785603f58a4SSatish Balay   a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners);
1786f09e8eb9SSatish Balay   PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIAIJ));
1787603f58a4SSatish Balay   a->cowners = a->rowners + a->size + 2;
1788603f58a4SSatish Balay   PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int));
1789416022c9SBarry Smith   ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr);
17902ee70a88SLois Curfman McInnes   if (oldmat->colmap) {
17910452661fSBarry Smith     a->colmap = (int *) PetscMalloc((a->N)*sizeof(int));CHKPTRQ(a->colmap);
1792416022c9SBarry Smith     PLogObjectMemory(mat,(a->N)*sizeof(int));
1793416022c9SBarry Smith     PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int));
1794416022c9SBarry Smith   } else a->colmap = 0;
17953f41c07dSBarry Smith   if (oldmat->garray) {
17963f41c07dSBarry Smith     len = ((Mat_SeqAIJ *) (oldmat->B->data))->n;
17973f41c07dSBarry Smith     a->garray = (int *) PetscMalloc((len+1)*sizeof(int)); CHKPTRQ(a->garray);
1798464493b3SBarry Smith     PLogObjectMemory(mat,len*sizeof(int));
17993f41c07dSBarry Smith     if (len) PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));
1800416022c9SBarry Smith   } else a->garray = 0;
1801d6dfbf8fSBarry Smith 
1802416022c9SBarry Smith   ierr =  VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr);
1803416022c9SBarry Smith   PLogObjectParent(mat,a->lvec);
1804a56f8943SBarry Smith   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr);
1805416022c9SBarry Smith   PLogObjectParent(mat,a->Mvctx);
1806416022c9SBarry Smith   ierr =  MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr);
1807416022c9SBarry Smith   PLogObjectParent(mat,a->A);
1808416022c9SBarry Smith   ierr =  MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr);
1809416022c9SBarry Smith   PLogObjectParent(mat,a->B);
18105dd7a6c7SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr);
181125cdf11fSBarry Smith   if (flg) {
1812682d7d0cSBarry Smith     ierr = MatPrintHelp(mat); CHKERRQ(ierr);
1813682d7d0cSBarry Smith   }
18148a729477SBarry Smith   *newmat = mat;
18153a40ed3dSBarry Smith   PetscFunctionReturn(0);
18168a729477SBarry Smith }
1817416022c9SBarry Smith 
181877c4ece6SBarry Smith #include "sys.h"
1819416022c9SBarry Smith 
18205615d1e5SSatish Balay #undef __FUNC__
18215615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIAIJ"
182219bcc07fSBarry Smith int MatLoad_MPIAIJ(Viewer viewer,MatType type,Mat *newmat)
1823416022c9SBarry Smith {
1824d65a2f8fSBarry Smith   Mat          A;
1825d65a2f8fSBarry Smith   Scalar       *vals,*svals;
182619bcc07fSBarry Smith   MPI_Comm     comm = ((PetscObject)viewer)->comm;
1827416022c9SBarry Smith   MPI_Status   status;
18283a40ed3dSBarry Smith   int          i, nz, ierr, j,rstart, rend, fd;
182917699dbbSLois Curfman McInnes   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols;
1830d65a2f8fSBarry Smith   int          *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols;
183119bcc07fSBarry Smith   int          tag = ((PetscObject)viewer)->tag;
1832416022c9SBarry Smith 
18333a40ed3dSBarry Smith   PetscFunctionBegin;
183417699dbbSLois Curfman McInnes   MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank);
183517699dbbSLois Curfman McInnes   if (!rank) {
183690ace30eSBarry Smith     ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
18370752156aSBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT); CHKERRQ(ierr);
1838a8c6a408SBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object");
1839d64ed03dSBarry Smith     if (header[3] < 0) {
1840a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix in special format on disk, cannot load as MPIAIJ");
1841d64ed03dSBarry Smith     }
18426c5fab8fSBarry Smith   }
18436c5fab8fSBarry Smith 
1844ca161407SBarry Smith   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
1845416022c9SBarry Smith   M = header[1]; N = header[2];
1846416022c9SBarry Smith   /* determine ownership of all rows */
184717699dbbSLois Curfman McInnes   m = M/size + ((M % size) > rank);
18480452661fSBarry Smith   rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners);
1849ca161407SBarry Smith   ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
1850416022c9SBarry Smith   rowners[0] = 0;
185117699dbbSLois Curfman McInnes   for ( i=2; i<=size; i++ ) {
1852416022c9SBarry Smith     rowners[i] += rowners[i-1];
1853416022c9SBarry Smith   }
185417699dbbSLois Curfman McInnes   rstart = rowners[rank];
185517699dbbSLois Curfman McInnes   rend   = rowners[rank+1];
1856416022c9SBarry Smith 
1857416022c9SBarry Smith   /* distribute row lengths to all processors */
18580452661fSBarry Smith   ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens);
1859416022c9SBarry Smith   offlens = ourlens + (rend-rstart);
186017699dbbSLois Curfman McInnes   if (!rank) {
18610452661fSBarry Smith     rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths);
18620752156aSBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr);
18630452661fSBarry Smith     sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts);
186417699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i];
1865ca161407SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr);
18660452661fSBarry Smith     PetscFree(sndcounts);
18673a40ed3dSBarry Smith   } else {
1868ca161407SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);CHKERRQ(ierr);
1869416022c9SBarry Smith   }
1870416022c9SBarry Smith 
187117699dbbSLois Curfman McInnes   if (!rank) {
1872416022c9SBarry Smith     /* calculate the number of nonzeros on each processor */
18730452661fSBarry Smith     procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz);
1874cddf8d76SBarry Smith     PetscMemzero(procsnz,size*sizeof(int));
187517699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) {
1876416022c9SBarry Smith       for ( j=rowners[i]; j< rowners[i+1]; j++ ) {
1877416022c9SBarry Smith         procsnz[i] += rowlengths[j];
1878416022c9SBarry Smith       }
1879416022c9SBarry Smith     }
18800452661fSBarry Smith     PetscFree(rowlengths);
1881416022c9SBarry Smith 
1882416022c9SBarry Smith     /* determine max buffer needed and allocate it */
1883416022c9SBarry Smith     maxnz = 0;
188417699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) {
18850452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
1886416022c9SBarry Smith     }
18870452661fSBarry Smith     cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols);
1888416022c9SBarry Smith 
1889416022c9SBarry Smith     /* read in my part of the matrix column indices  */
1890416022c9SBarry Smith     nz     = procsnz[0];
18910452661fSBarry Smith     mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
18920752156aSBarry Smith     ierr   = PetscBinaryRead(fd,mycols,nz,PETSC_INT); CHKERRQ(ierr);
1893d65a2f8fSBarry Smith 
1894d65a2f8fSBarry Smith     /* read in every one elses and ship off */
189517699dbbSLois Curfman McInnes     for ( i=1; i<size; i++ ) {
1896d65a2f8fSBarry Smith       nz   = procsnz[i];
18970752156aSBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr);
1898ca161407SBarry Smith       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
1899d65a2f8fSBarry Smith     }
19000452661fSBarry Smith     PetscFree(cols);
19013a40ed3dSBarry Smith   } else {
1902416022c9SBarry Smith     /* determine buffer space needed for message */
1903416022c9SBarry Smith     nz = 0;
1904416022c9SBarry Smith     for ( i=0; i<m; i++ ) {
1905416022c9SBarry Smith       nz += ourlens[i];
1906416022c9SBarry Smith     }
19070452661fSBarry Smith     mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
1908416022c9SBarry Smith 
1909416022c9SBarry Smith     /* receive message of column indices*/
1910ca161407SBarry Smith     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
1911ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
1912a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
1913416022c9SBarry Smith   }
1914416022c9SBarry Smith 
1915416022c9SBarry Smith   /* loop over local rows, determining number of off diagonal entries */
1916cddf8d76SBarry Smith   PetscMemzero(offlens,m*sizeof(int));
1917416022c9SBarry Smith   jj = 0;
1918416022c9SBarry Smith   for ( i=0; i<m; i++ ) {
1919416022c9SBarry Smith     for ( j=0; j<ourlens[i]; j++ ) {
1920d65a2f8fSBarry Smith       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
1921416022c9SBarry Smith       jj++;
1922416022c9SBarry Smith     }
1923416022c9SBarry Smith   }
1924d65a2f8fSBarry Smith 
1925d65a2f8fSBarry Smith   /* create our matrix */
1926416022c9SBarry Smith   for ( i=0; i<m; i++ ) {
1927416022c9SBarry Smith     ourlens[i] -= offlens[i];
1928416022c9SBarry Smith   }
1929d65a2f8fSBarry Smith   ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr);
1930d65a2f8fSBarry Smith   A = *newmat;
19316d4a8577SBarry Smith   MatSetOption(A,MAT_COLUMNS_SORTED);
1932d65a2f8fSBarry Smith   for ( i=0; i<m; i++ ) {
1933d65a2f8fSBarry Smith     ourlens[i] += offlens[i];
1934d65a2f8fSBarry Smith   }
1935416022c9SBarry Smith 
193617699dbbSLois Curfman McInnes   if (!rank) {
19370452661fSBarry Smith     vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals);
1938416022c9SBarry Smith 
1939416022c9SBarry Smith     /* read in my part of the matrix numerical values  */
1940416022c9SBarry Smith     nz = procsnz[0];
19410752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
1942d65a2f8fSBarry Smith 
1943d65a2f8fSBarry Smith     /* insert into matrix */
1944d65a2f8fSBarry Smith     jj      = rstart;
1945d65a2f8fSBarry Smith     smycols = mycols;
1946d65a2f8fSBarry Smith     svals   = vals;
1947d65a2f8fSBarry Smith     for ( i=0; i<m; i++ ) {
1948d65a2f8fSBarry Smith       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1949d65a2f8fSBarry Smith       smycols += ourlens[i];
1950d65a2f8fSBarry Smith       svals   += ourlens[i];
1951d65a2f8fSBarry Smith       jj++;
1952416022c9SBarry Smith     }
1953416022c9SBarry Smith 
1954d65a2f8fSBarry Smith     /* read in other processors and ship out */
195517699dbbSLois Curfman McInnes     for ( i=1; i<size; i++ ) {
1956416022c9SBarry Smith       nz   = procsnz[i];
19570752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
1958ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
1959416022c9SBarry Smith     }
19600452661fSBarry Smith     PetscFree(procsnz);
19613a40ed3dSBarry Smith   } else {
1962d65a2f8fSBarry Smith     /* receive numeric values */
19630452661fSBarry Smith     vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals);
1964416022c9SBarry Smith 
1965d65a2f8fSBarry Smith     /* receive message of values*/
1966ca161407SBarry Smith     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
1967ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
1968a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
1969d65a2f8fSBarry Smith 
1970d65a2f8fSBarry Smith     /* insert into matrix */
1971d65a2f8fSBarry Smith     jj      = rstart;
1972d65a2f8fSBarry Smith     smycols = mycols;
1973d65a2f8fSBarry Smith     svals   = vals;
1974d65a2f8fSBarry Smith     for ( i=0; i<m; i++ ) {
1975d65a2f8fSBarry Smith       ierr     = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1976d65a2f8fSBarry Smith       smycols += ourlens[i];
1977d65a2f8fSBarry Smith       svals   += ourlens[i];
1978d65a2f8fSBarry Smith       jj++;
1979d65a2f8fSBarry Smith     }
1980d65a2f8fSBarry Smith   }
19810452661fSBarry Smith   PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners);
1982d65a2f8fSBarry Smith 
19836d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
19846d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
19853a40ed3dSBarry Smith   PetscFunctionReturn(0);
1986416022c9SBarry Smith }
1987a0ff6018SBarry Smith 
198829da9460SBarry Smith #undef __FUNC__
198929da9460SBarry Smith #define __FUNC__ "MatGetSubMatrix_MPIAIJ"
1990a0ff6018SBarry Smith /*
199129da9460SBarry Smith     Not great since it makes two copies of the submatrix, first an SeqAIJ
199229da9460SBarry Smith   in local and then by concatenating the local matrices the end result.
199329da9460SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIAIJ()
1994a0ff6018SBarry Smith */
19956a6a5d1dSBarry Smith int MatGetSubMatrix_MPIAIJ(Mat mat,IS isrow,IS iscol,int csize,MatGetSubMatrixCall call,Mat *newmat)
1996a0ff6018SBarry Smith {
199700e6dbe6SBarry Smith   int        ierr, i, m,n,rstart,row,rend,nz,*cwork,size,rank,j;
1998fee21e36SBarry Smith   Mat        *local,M, Mreuse;
199900e6dbe6SBarry Smith   Scalar     *vwork,*aa;
200000e6dbe6SBarry Smith   MPI_Comm   comm = mat->comm;
200100e6dbe6SBarry Smith   Mat_SeqAIJ *aij;
200200e6dbe6SBarry Smith   int        *ii, *jj,nlocal,*dlens,*olens,dlen,olen,jend;
2003a0ff6018SBarry Smith 
2004a0ff6018SBarry Smith   PetscFunctionBegin;
200500e6dbe6SBarry Smith   MPI_Comm_rank(comm,&rank);
200600e6dbe6SBarry Smith   MPI_Comm_size(comm,&size);
200700e6dbe6SBarry Smith 
2008fee21e36SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
2009fee21e36SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr);
2010fee21e36SBarry Smith     if (!Mreuse) SETERRQ(1,1,"Submatrix passed in was not used before, cannot reuse");
2011fee21e36SBarry Smith     local = &Mreuse;
2012fee21e36SBarry Smith     ierr  = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr);
2013fee21e36SBarry Smith   } else {
2014a0ff6018SBarry Smith     ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr);
2015fee21e36SBarry Smith     Mreuse = *local;
2016fee21e36SBarry Smith     PetscFree(local);
2017fee21e36SBarry Smith   }
2018a0ff6018SBarry Smith 
2019a0ff6018SBarry Smith   /*
2020a0ff6018SBarry Smith       m - number of local rows
2021a0ff6018SBarry Smith       n - number of columns (same on all processors)
2022a0ff6018SBarry Smith       rstart - first row in new global matrix generated
2023a0ff6018SBarry Smith   */
2024fee21e36SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
2025a0ff6018SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
2026fee21e36SBarry Smith     aij = (Mat_SeqAIJ *) (Mreuse)->data;
2027a8c6a408SBarry Smith     if (aij->indexshift) SETERRQ(PETSC_ERR_SUP,1,"No support for index shifted matrix");
202800e6dbe6SBarry Smith     ii  = aij->i;
202900e6dbe6SBarry Smith     jj  = aij->j;
203000e6dbe6SBarry Smith 
2031a0ff6018SBarry Smith     /*
203200e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
203300e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
2034a0ff6018SBarry Smith     */
203500e6dbe6SBarry Smith 
203600e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
20376a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
203800e6dbe6SBarry Smith       nlocal = n/size + ((n % size) > rank);
20396a6a5d1dSBarry Smith     } else {
20406a6a5d1dSBarry Smith       nlocal = csize;
20416a6a5d1dSBarry Smith     }
2042ca161407SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
204300e6dbe6SBarry Smith     rstart = rend - nlocal;
20446a6a5d1dSBarry Smith     if (rank == size - 1 && rend != n) {
20456a6a5d1dSBarry Smith       SETERRQ(1,1,"Local column sizes do not add up to total number of columns");
20466a6a5d1dSBarry Smith     }
204700e6dbe6SBarry Smith 
204800e6dbe6SBarry Smith     /* next, compute all the lengths */
204900e6dbe6SBarry Smith     dlens = (int *) PetscMalloc( (2*m+1)*sizeof(int) );CHKPTRQ(dlens);
205000e6dbe6SBarry Smith     olens = dlens + m;
205100e6dbe6SBarry Smith     for ( i=0; i<m; i++ ) {
205200e6dbe6SBarry Smith       jend = ii[i+1] - ii[i];
205300e6dbe6SBarry Smith       olen = 0;
205400e6dbe6SBarry Smith       dlen = 0;
205500e6dbe6SBarry Smith       for ( j=0; j<jend; j++ ) {
205600e6dbe6SBarry Smith         if ( *jj < rstart || *jj >= rend) olen++;
205700e6dbe6SBarry Smith         else dlen++;
205800e6dbe6SBarry Smith         jj++;
205900e6dbe6SBarry Smith       }
206000e6dbe6SBarry Smith       olens[i] = olen;
206100e6dbe6SBarry Smith       dlens[i] = dlen;
206200e6dbe6SBarry Smith     }
206300e6dbe6SBarry Smith     ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,PETSC_DECIDE,n,0,dlens,0,olens,&M);CHKERRQ(ierr);
206400e6dbe6SBarry Smith     PetscFree(dlens);
2065a0ff6018SBarry Smith   } else {
2066a0ff6018SBarry Smith     int ml,nl;
2067a0ff6018SBarry Smith 
2068a0ff6018SBarry Smith     M = *newmat;
2069a0ff6018SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
2070a8c6a408SBarry Smith     if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,1,"Previous matrix must be same size/layout as request");
2071a0ff6018SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
2072c48de900SBarry Smith     /*
2073c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
2074c48de900SBarry Smith        rather than the slower MatSetValues().
2075c48de900SBarry Smith     */
2076c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
2077c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
2078a0ff6018SBarry Smith   }
2079a0ff6018SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend); CHKERRQ(ierr);
2080fee21e36SBarry Smith   aij = (Mat_SeqAIJ *) (Mreuse)->data;
2081a8c6a408SBarry Smith   if (aij->indexshift) SETERRQ(PETSC_ERR_SUP,1,"No support for index shifted matrix");
208200e6dbe6SBarry Smith   ii  = aij->i;
208300e6dbe6SBarry Smith   jj  = aij->j;
208400e6dbe6SBarry Smith   aa  = aij->a;
2085a0ff6018SBarry Smith   for (i=0; i<m; i++) {
2086a0ff6018SBarry Smith     row   = rstart + i;
208700e6dbe6SBarry Smith     nz    = ii[i+1] - ii[i];
208800e6dbe6SBarry Smith     cwork = jj;     jj += nz;
208900e6dbe6SBarry Smith     vwork = aa;     aa += nz;
20908c638d02SBarry Smith     ierr = MatSetValues_MPIAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES); CHKERRQ(ierr);
2091a0ff6018SBarry Smith   }
2092a0ff6018SBarry Smith 
2093a0ff6018SBarry Smith   ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
2094a0ff6018SBarry Smith   ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
2095a0ff6018SBarry Smith   *newmat = M;
2096fee21e36SBarry Smith 
2097fee21e36SBarry Smith   /* save submatrix used in processor for next request */
2098fee21e36SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
2099fee21e36SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
2100fee21e36SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
2101fee21e36SBarry Smith   }
2102fee21e36SBarry Smith 
2103a0ff6018SBarry Smith   PetscFunctionReturn(0);
2104a0ff6018SBarry Smith }
2105