1b57c8cebSBarry Smith 2a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER 3*fa852ad4SSatish Balay static char vcid[] = "$Id: mpiaij.c,v 1.251 1998/06/19 15:56:02 bsmith Exp balay $"; 4cb512458SBarry Smith #endif 58a729477SBarry Smith 63369ce9aSBarry Smith #include "pinclude/pviewer.h" 770f55243SBarry Smith #include "src/mat/impls/aij/mpi/mpiaij.h" 8f5eb4b81SSatish Balay #include "src/vec/vecimpl.h" 9d9942c19SSatish Balay #include "src/inline/spops.h" 108a729477SBarry Smith 119e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column 129e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 139e25ed09SBarry Smith storage of the matrix. This is done in a non scable way since the 149e25ed09SBarry Smith length of colmap equals the global matrix length. 159e25ed09SBarry Smith */ 165615d1e5SSatish Balay #undef __FUNC__ 17d4bb536fSBarry Smith #define __FUNC__ "CreateColmap_MPIAIJ_Private" 180a198c4cSBarry Smith int CreateColmap_MPIAIJ_Private(Mat mat) 199e25ed09SBarry Smith { 2044a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 21ec8511deSBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data; 22905e6a2fSBarry Smith int n = B->n,i; 23dbb450caSBarry Smith 243a40ed3dSBarry Smith PetscFunctionBegin; 25758f045eSSatish Balay aij->colmap = (int *) PetscMalloc((aij->N+1)*sizeof(int));CHKPTRQ(aij->colmap); 26464493b3SBarry Smith PLogObjectMemory(mat,aij->N*sizeof(int)); 27cddf8d76SBarry Smith PetscMemzero(aij->colmap,aij->N*sizeof(int)); 28905e6a2fSBarry Smith for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i+1; 293a40ed3dSBarry Smith PetscFunctionReturn(0); 309e25ed09SBarry Smith } 319e25ed09SBarry Smith 322493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat); 332493cbb0SBarry Smith 340520107fSSatish Balay #define CHUNKSIZE 15 3530770e4dSSatish Balay #define MatSetValues_SeqAIJ_A_Private(row,col,value,addv) \ 360520107fSSatish Balay { \ 370520107fSSatish Balay \ 380520107fSSatish Balay rp = aj + ai[row] + shift; ap = aa + ai[row] + shift; \ 3930770e4dSSatish Balay rmax = aimax[row]; nrow = ailen[row]; \ 40f5e9677aSSatish Balay col1 = col - shift; \ 41f5e9677aSSatish Balay \ 42ba4e3ef2SSatish Balay low = 0; high = nrow; \ 43ba4e3ef2SSatish Balay while (high-low > 5) { \ 44ba4e3ef2SSatish Balay t = (low+high)/2; \ 45ba4e3ef2SSatish Balay if (rp[t] > col) high = t; \ 46ba4e3ef2SSatish Balay else low = t; \ 47ba4e3ef2SSatish Balay } \ 480520107fSSatish Balay for ( _i=0; _i<nrow; _i++ ) { \ 49f5e9677aSSatish Balay if (rp[_i] > col1) break; \ 50f5e9677aSSatish Balay if (rp[_i] == col1) { \ 510520107fSSatish Balay if (addv == ADD_VALUES) ap[_i] += value; \ 520520107fSSatish Balay else ap[_i] = value; \ 5330770e4dSSatish Balay goto a_noinsert; \ 540520107fSSatish Balay } \ 550520107fSSatish Balay } \ 5689280ab3SLois Curfman McInnes if (nonew == 1) goto a_noinsert; \ 57a8c6a408SBarry Smith else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 580520107fSSatish Balay if (nrow >= rmax) { \ 590520107fSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 600520107fSSatish Balay int new_nz = ai[a->m] + CHUNKSIZE,len,*new_i,*new_j; \ 610520107fSSatish Balay Scalar *new_a; \ 620520107fSSatish Balay \ 63a8c6a408SBarry Smith if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 6489280ab3SLois Curfman McInnes \ 650520107fSSatish Balay /* malloc new storage space */ \ 660520107fSSatish Balay len = new_nz*(sizeof(int)+sizeof(Scalar))+(a->m+1)*sizeof(int); \ 670520107fSSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \ 680520107fSSatish Balay new_j = (int *) (new_a + new_nz); \ 690520107fSSatish Balay new_i = new_j + new_nz; \ 700520107fSSatish Balay \ 710520107fSSatish Balay /* copy over old data into new slots */ \ 720520107fSSatish Balay for ( ii=0; ii<row+1; ii++ ) {new_i[ii] = ai[ii];} \ 730520107fSSatish Balay for ( ii=row+1; ii<a->m+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 740520107fSSatish Balay PetscMemcpy(new_j,aj,(ai[row]+nrow+shift)*sizeof(int)); \ 750520107fSSatish Balay len = (new_nz - CHUNKSIZE - ai[row] - nrow - shift); \ 760520107fSSatish Balay PetscMemcpy(new_j+ai[row]+shift+nrow+CHUNKSIZE,aj+ai[row]+shift+nrow, \ 770520107fSSatish Balay len*sizeof(int)); \ 780520107fSSatish Balay PetscMemcpy(new_a,aa,(ai[row]+nrow+shift)*sizeof(Scalar)); \ 790520107fSSatish Balay PetscMemcpy(new_a+ai[row]+shift+nrow+CHUNKSIZE,aa+ai[row]+shift+nrow, \ 800520107fSSatish Balay len*sizeof(Scalar)); \ 810520107fSSatish Balay /* free up old matrix storage */ \ 82f5e9677aSSatish Balay \ 830520107fSSatish Balay PetscFree(a->a); \ 840520107fSSatish Balay if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} \ 850520107fSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 860520107fSSatish Balay a->singlemalloc = 1; \ 870520107fSSatish Balay \ 880520107fSSatish Balay rp = aj + ai[row] + shift; ap = aa + ai[row] + shift; \ 8930770e4dSSatish Balay rmax = aimax[row] = aimax[row] + CHUNKSIZE; \ 900520107fSSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + sizeof(Scalar))); \ 910520107fSSatish Balay a->maxnz += CHUNKSIZE; \ 920520107fSSatish Balay a->reallocs++; \ 930520107fSSatish Balay } \ 940520107fSSatish Balay N = nrow++ - 1; a->nz++; \ 950520107fSSatish Balay /* shift up all the later entries in this row */ \ 960520107fSSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 970520107fSSatish Balay rp[ii+1] = rp[ii]; \ 980520107fSSatish Balay ap[ii+1] = ap[ii]; \ 990520107fSSatish Balay } \ 100f5e9677aSSatish Balay rp[_i] = col1; \ 1010520107fSSatish Balay ap[_i] = value; \ 10230770e4dSSatish Balay a_noinsert: ; \ 1030520107fSSatish Balay ailen[row] = nrow; \ 1040520107fSSatish Balay } 1050a198c4cSBarry Smith 10630770e4dSSatish Balay #define MatSetValues_SeqAIJ_B_Private(row,col,value,addv) \ 10730770e4dSSatish Balay { \ 10830770e4dSSatish Balay \ 10930770e4dSSatish Balay rp = bj + bi[row] + shift; ap = ba + bi[row] + shift; \ 11030770e4dSSatish Balay rmax = bimax[row]; nrow = bilen[row]; \ 11130770e4dSSatish Balay col1 = col - shift; \ 11230770e4dSSatish Balay \ 113ba4e3ef2SSatish Balay low = 0; high = nrow; \ 114ba4e3ef2SSatish Balay while (high-low > 5) { \ 115ba4e3ef2SSatish Balay t = (low+high)/2; \ 116ba4e3ef2SSatish Balay if (rp[t] > col) high = t; \ 117ba4e3ef2SSatish Balay else low = t; \ 118ba4e3ef2SSatish Balay } \ 11930770e4dSSatish Balay for ( _i=0; _i<nrow; _i++ ) { \ 12030770e4dSSatish Balay if (rp[_i] > col1) break; \ 12130770e4dSSatish Balay if (rp[_i] == col1) { \ 12230770e4dSSatish Balay if (addv == ADD_VALUES) ap[_i] += value; \ 12330770e4dSSatish Balay else ap[_i] = value; \ 12430770e4dSSatish Balay goto b_noinsert; \ 12530770e4dSSatish Balay } \ 12630770e4dSSatish Balay } \ 12789280ab3SLois Curfman McInnes if (nonew == 1) goto b_noinsert; \ 128a8c6a408SBarry Smith else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 12930770e4dSSatish Balay if (nrow >= rmax) { \ 13030770e4dSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 13174c639caSSatish Balay int new_nz = bi[b->m] + CHUNKSIZE,len,*new_i,*new_j; \ 13230770e4dSSatish Balay Scalar *new_a; \ 13330770e4dSSatish Balay \ 134a8c6a408SBarry Smith if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 13589280ab3SLois Curfman McInnes \ 13630770e4dSSatish Balay /* malloc new storage space */ \ 13774c639caSSatish Balay len = new_nz*(sizeof(int)+sizeof(Scalar))+(b->m+1)*sizeof(int); \ 13830770e4dSSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \ 13930770e4dSSatish Balay new_j = (int *) (new_a + new_nz); \ 14030770e4dSSatish Balay new_i = new_j + new_nz; \ 14130770e4dSSatish Balay \ 14230770e4dSSatish Balay /* copy over old data into new slots */ \ 14330770e4dSSatish Balay for ( ii=0; ii<row+1; ii++ ) {new_i[ii] = bi[ii];} \ 14474c639caSSatish Balay for ( ii=row+1; ii<b->m+1; ii++ ) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 14530770e4dSSatish Balay PetscMemcpy(new_j,bj,(bi[row]+nrow+shift)*sizeof(int)); \ 14630770e4dSSatish Balay len = (new_nz - CHUNKSIZE - bi[row] - nrow - shift); \ 14730770e4dSSatish Balay PetscMemcpy(new_j+bi[row]+shift+nrow+CHUNKSIZE,bj+bi[row]+shift+nrow, \ 14830770e4dSSatish Balay len*sizeof(int)); \ 14930770e4dSSatish Balay PetscMemcpy(new_a,ba,(bi[row]+nrow+shift)*sizeof(Scalar)); \ 15030770e4dSSatish Balay PetscMemcpy(new_a+bi[row]+shift+nrow+CHUNKSIZE,ba+bi[row]+shift+nrow, \ 15130770e4dSSatish Balay len*sizeof(Scalar)); \ 15230770e4dSSatish Balay /* free up old matrix storage */ \ 15330770e4dSSatish Balay \ 15474c639caSSatish Balay PetscFree(b->a); \ 15574c639caSSatish Balay if (!b->singlemalloc) {PetscFree(b->i);PetscFree(b->j);} \ 15674c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 15774c639caSSatish Balay b->singlemalloc = 1; \ 15830770e4dSSatish Balay \ 15930770e4dSSatish Balay rp = bj + bi[row] + shift; ap = ba + bi[row] + shift; \ 16030770e4dSSatish Balay rmax = bimax[row] = bimax[row] + CHUNKSIZE; \ 16174c639caSSatish Balay PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + sizeof(Scalar))); \ 16274c639caSSatish Balay b->maxnz += CHUNKSIZE; \ 16374c639caSSatish Balay b->reallocs++; \ 16430770e4dSSatish Balay } \ 16574c639caSSatish Balay N = nrow++ - 1; b->nz++; \ 16630770e4dSSatish Balay /* shift up all the later entries in this row */ \ 16730770e4dSSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 16830770e4dSSatish Balay rp[ii+1] = rp[ii]; \ 16930770e4dSSatish Balay ap[ii+1] = ap[ii]; \ 17030770e4dSSatish Balay } \ 17130770e4dSSatish Balay rp[_i] = col1; \ 17230770e4dSSatish Balay ap[_i] = value; \ 17330770e4dSSatish Balay b_noinsert: ; \ 17430770e4dSSatish Balay bilen[row] = nrow; \ 17530770e4dSSatish Balay } 17630770e4dSSatish Balay 1770520107fSSatish Balay extern int MatSetValues_SeqAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 1785615d1e5SSatish Balay #undef __FUNC__ 1795615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIAIJ" 1808f6be9afSLois Curfman McInnes int MatSetValues_MPIAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 1818a729477SBarry Smith { 18244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1834b0e389bSBarry Smith Scalar value; 1841eb62cbbSBarry Smith int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 1851eb62cbbSBarry Smith int cstart = aij->cstart, cend = aij->cend,row,col; 186905e6a2fSBarry Smith int roworiented = aij->roworiented; 1878a729477SBarry Smith 1880520107fSSatish Balay /* Some Variables required in the macro */ 1894ee7247eSSatish Balay Mat A = aij->A; 1904ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *) A->data; 19130770e4dSSatish Balay int *aimax = a->imax, *ai = a->i, *ailen = a->ilen,*aj = a->j; 19230770e4dSSatish Balay Scalar *aa = a->a; 19330770e4dSSatish Balay 19430770e4dSSatish Balay Mat B = aij->B; 19530770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *) B->data; 19630770e4dSSatish Balay int *bimax = b->imax, *bi = b->i, *bilen = b->ilen,*bj = b->j; 19730770e4dSSatish Balay Scalar *ba = b->a; 19830770e4dSSatish Balay 199ba4e3ef2SSatish Balay int *rp,ii,nrow,_i,rmax, N, col1,low,high,t; 20030770e4dSSatish Balay int nonew = a->nonew,shift = a->indexshift; 20130770e4dSSatish Balay Scalar *ap; 2024ee7247eSSatish Balay 2033a40ed3dSBarry Smith PetscFunctionBegin; 2048a729477SBarry Smith for ( i=0; i<m; i++ ) { 2053a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 206a8c6a408SBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 207a8c6a408SBarry Smith if (im[i] >= aij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 2080a198c4cSBarry Smith #endif 2094b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 2104b0e389bSBarry Smith row = im[i] - rstart; 2111eb62cbbSBarry Smith for ( j=0; j<n; j++ ) { 2124b0e389bSBarry Smith if (in[j] >= cstart && in[j] < cend){ 2134b0e389bSBarry Smith col = in[j] - cstart; 2144b0e389bSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 21530770e4dSSatish Balay MatSetValues_SeqAIJ_A_Private(row,col,value,addv); 2160520107fSSatish Balay /* ierr = MatSetValues_SeqAIJ(aij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 2171eb62cbbSBarry Smith } 2183a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 219a8c6a408SBarry Smith else if (in[j] < 0) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");} 220a8c6a408SBarry Smith else if (in[j] >= aij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");} 2210a198c4cSBarry Smith #endif 2221eb62cbbSBarry Smith else { 223227d817aSBarry Smith if (mat->was_assembled) { 224905e6a2fSBarry Smith if (!aij->colmap) { 225905e6a2fSBarry Smith ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr); 226905e6a2fSBarry Smith } 227905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 228ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 2292493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2304b0e389bSBarry Smith col = in[j]; 2319bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 232f9508a3cSSatish Balay B = aij->B; 233f9508a3cSSatish Balay b = (Mat_SeqAIJ *) B->data; 234f9508a3cSSatish Balay bimax = b->imax; bi = b->i; bilen = b->ilen; bj = b->j; 235f9508a3cSSatish Balay ba = b->a; 236d6dfbf8fSBarry Smith } 237c48de900SBarry Smith } else col = in[j]; 2384b0e389bSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 23930770e4dSSatish Balay MatSetValues_SeqAIJ_B_Private(row,col,value,addv); 24030770e4dSSatish Balay /* ierr = MatSetValues_SeqAIJ(aij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 2411eb62cbbSBarry Smith } 2421eb62cbbSBarry Smith } 2431eb62cbbSBarry Smith } 2441eb62cbbSBarry Smith else { 24590f02eecSBarry Smith if (roworiented && !aij->donotstash) { 2464b0e389bSBarry Smith ierr = StashValues_Private(&aij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 2474b0e389bSBarry Smith } 2484b0e389bSBarry Smith else { 24990f02eecSBarry Smith if (!aij->donotstash) { 2504b0e389bSBarry Smith row = im[i]; 2514b0e389bSBarry Smith for ( j=0; j<n; j++ ) { 2524b0e389bSBarry Smith ierr = StashValues_Private(&aij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 2534b0e389bSBarry Smith } 2544b0e389bSBarry Smith } 2551eb62cbbSBarry Smith } 2568a729477SBarry Smith } 25790f02eecSBarry Smith } 2583a40ed3dSBarry Smith PetscFunctionReturn(0); 2598a729477SBarry Smith } 2608a729477SBarry Smith 2615615d1e5SSatish Balay #undef __FUNC__ 2625615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIAIJ" 2638f6be9afSLois Curfman McInnes int MatGetValues_MPIAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 264b49de8d1SLois Curfman McInnes { 265b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 266b49de8d1SLois Curfman McInnes int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 267b49de8d1SLois Curfman McInnes int cstart = aij->cstart, cend = aij->cend,row,col; 268b49de8d1SLois Curfman McInnes 2693a40ed3dSBarry Smith PetscFunctionBegin; 270b49de8d1SLois Curfman McInnes for ( i=0; i<m; i++ ) { 271a8c6a408SBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 272a8c6a408SBarry Smith if (idxm[i] >= aij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 273b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 274b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 275b49de8d1SLois Curfman McInnes for ( j=0; j<n; j++ ) { 276a8c6a408SBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 277a8c6a408SBarry Smith if (idxn[j] >= aij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 278b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend){ 279b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 280b49de8d1SLois Curfman McInnes ierr = MatGetValues(aij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 281*fa852ad4SSatish Balay } else { 282905e6a2fSBarry Smith if (!aij->colmap) { 283905e6a2fSBarry Smith ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr); 284905e6a2fSBarry Smith } 285905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 286e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v+i*n+j) = 0.0; 287d9d09a02SSatish Balay else { 288b49de8d1SLois Curfman McInnes ierr = MatGetValues(aij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 289b49de8d1SLois Curfman McInnes } 290b49de8d1SLois Curfman McInnes } 291b49de8d1SLois Curfman McInnes } 292a8c6a408SBarry Smith } else { 293a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported"); 294b49de8d1SLois Curfman McInnes } 295b49de8d1SLois Curfman McInnes } 2963a40ed3dSBarry Smith PetscFunctionReturn(0); 297b49de8d1SLois Curfman McInnes } 298b49de8d1SLois Curfman McInnes 2995615d1e5SSatish Balay #undef __FUNC__ 3005615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIAIJ" 3018f6be9afSLois Curfman McInnes int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode) 3028a729477SBarry Smith { 30344a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 304d6dfbf8fSBarry Smith MPI_Comm comm = mat->comm; 30517699dbbSLois Curfman McInnes int size = aij->size, *owners = aij->rowners; 30617699dbbSLois Curfman McInnes int rank = aij->rank,tag = mat->tag, *owner,*starts,count,ierr; 3071eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 3086abc6512SBarry Smith int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 3091eb62cbbSBarry Smith InsertMode addv; 3101eb62cbbSBarry Smith Scalar *rvalues,*svalues; 3111eb62cbbSBarry Smith 3123a40ed3dSBarry Smith PetscFunctionBegin; 313b5bd3ad5SBarry Smith if (aij->donotstash) { 314b5bd3ad5SBarry Smith aij->svalues = 0; aij->rvalues = 0; 315b5bd3ad5SBarry Smith aij->nsends = 0; aij->nrecvs = 0; 316b5bd3ad5SBarry Smith aij->send_waits = 0; aij->recv_waits = 0; 317b5bd3ad5SBarry Smith aij->rmax = 0; 318b5bd3ad5SBarry Smith PetscFunctionReturn(0); 319b5bd3ad5SBarry Smith } 320b5bd3ad5SBarry Smith 3211eb62cbbSBarry Smith /* make sure all processors are either in INSERTMODE or ADDMODE */ 322ca161407SBarry Smith ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 323dbb450caSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 324a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added"); 3251eb62cbbSBarry Smith } 32647794344SBarry Smith mat->insertmode = addv; /* in case this processor had no cache */ 3271eb62cbbSBarry Smith 3281eb62cbbSBarry Smith /* first count number of contributors to each processor */ 3290452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 330cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 3310452661fSBarry Smith owner = (int *) PetscMalloc( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 3321eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 3331eb62cbbSBarry Smith idx = aij->stash.idx[i]; 33417699dbbSLois Curfman McInnes for ( j=0; j<size; j++ ) { 3351eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 3361eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; break; 3378a729477SBarry Smith } 3388a729477SBarry Smith } 3398a729477SBarry Smith } 34017699dbbSLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 3411eb62cbbSBarry Smith 3421eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 3430452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 344ca161407SBarry Smith ierr = MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 34517699dbbSLois Curfman McInnes nreceives = work[rank]; 346ca161407SBarry Smith ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 34717699dbbSLois Curfman McInnes nmax = work[rank]; 3480452661fSBarry Smith PetscFree(work); 3491eb62cbbSBarry Smith 3501eb62cbbSBarry Smith /* post receives: 3511eb62cbbSBarry Smith 1) each message will consist of ordered pairs 3521eb62cbbSBarry Smith (global index,value) we store the global index as a double 353d6dfbf8fSBarry Smith to simplify the message passing. 3541eb62cbbSBarry Smith 2) since we don't know how long each individual message is we 3551eb62cbbSBarry Smith allocate the largest needed buffer for each receive. Potentially 3561eb62cbbSBarry Smith this is a lot of wasted space. 3571eb62cbbSBarry Smith 3581eb62cbbSBarry Smith 3591eb62cbbSBarry Smith This could be done better. 3601eb62cbbSBarry Smith */ 361ca161407SBarry Smith rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues); 362ca161407SBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 3631eb62cbbSBarry Smith for ( i=0; i<nreceives; i++ ) { 364ca161407SBarry Smith ierr = MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 365ca161407SBarry Smith comm,recv_waits+i);CHKERRQ(ierr); 3661eb62cbbSBarry Smith } 3671eb62cbbSBarry Smith 3681eb62cbbSBarry Smith /* do sends: 3691eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 3701eb62cbbSBarry Smith the ith processor 3711eb62cbbSBarry Smith */ 3720452661fSBarry Smith svalues = (Scalar *) PetscMalloc(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 373ca161407SBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 3740452661fSBarry Smith starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 3751eb62cbbSBarry Smith starts[0] = 0; 37617699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3771eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 3781eb62cbbSBarry Smith svalues[3*starts[owner[i]]] = (Scalar) aij->stash.idx[i]; 3791eb62cbbSBarry Smith svalues[3*starts[owner[i]]+1] = (Scalar) aij->stash.idy[i]; 3801eb62cbbSBarry Smith svalues[3*(starts[owner[i]]++)+2] = aij->stash.array[i]; 3811eb62cbbSBarry Smith } 3820452661fSBarry Smith PetscFree(owner); 3831eb62cbbSBarry Smith starts[0] = 0; 38417699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3851eb62cbbSBarry Smith count = 0; 38617699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 3871eb62cbbSBarry Smith if (procs[i]) { 388ca161407SBarry Smith ierr = MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3891eb62cbbSBarry Smith } 3901eb62cbbSBarry Smith } 391b5bd3ad5SBarry Smith PetscFree(starts); 392b5bd3ad5SBarry Smith PetscFree(nprocs); 3931eb62cbbSBarry Smith 3941eb62cbbSBarry Smith /* Free cache space */ 39510a665d1SBarry Smith PLogInfo(aij->A,"MatAssemblyBegin_MPIAIJ:Number of off-processor values %d\n",aij->stash.n); 39678b31e54SBarry Smith ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr); 3971eb62cbbSBarry Smith 3981eb62cbbSBarry Smith aij->svalues = svalues; aij->rvalues = rvalues; 3991eb62cbbSBarry Smith aij->nsends = nsends; aij->nrecvs = nreceives; 4001eb62cbbSBarry Smith aij->send_waits = send_waits; aij->recv_waits = recv_waits; 4011eb62cbbSBarry Smith aij->rmax = nmax; 4021eb62cbbSBarry Smith 4033a40ed3dSBarry Smith PetscFunctionReturn(0); 4041eb62cbbSBarry Smith } 40544a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat); 4061eb62cbbSBarry Smith 4075615d1e5SSatish Balay #undef __FUNC__ 4085615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIAIJ" 4098f6be9afSLois Curfman McInnes int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode) 4101eb62cbbSBarry Smith { 41144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 4121eb62cbbSBarry Smith MPI_Status *send_status,recv_status; 413416022c9SBarry Smith int imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr; 414905e6a2fSBarry Smith int row,col,other_disassembled; 4151eb62cbbSBarry Smith Scalar *values,val; 41647794344SBarry Smith InsertMode addv = mat->insertmode; 4171eb62cbbSBarry Smith 4183a40ed3dSBarry Smith PetscFunctionBegin; 419b5bd3ad5SBarry Smith 4201eb62cbbSBarry Smith /* wait on receives */ 4211eb62cbbSBarry Smith while (count) { 422ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4231eb62cbbSBarry Smith /* unpack receives into our local space */ 424d6dfbf8fSBarry Smith values = aij->rvalues + 3*imdex*aij->rmax; 425ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,&n);CHKERRQ(ierr); 4261eb62cbbSBarry Smith n = n/3; 4271eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 428227d817aSBarry Smith row = (int) PetscReal(values[3*i]) - aij->rstart; 429227d817aSBarry Smith col = (int) PetscReal(values[3*i+1]); 4301eb62cbbSBarry Smith val = values[3*i+2]; 4311eb62cbbSBarry Smith if (col >= aij->cstart && col < aij->cend) { 4321eb62cbbSBarry Smith col -= aij->cstart; 4336fd7127cSSatish Balay ierr = MatSetValues(aij->A,1,&row,1,&col,&val,addv); CHKERRQ(ierr); 4343a40ed3dSBarry Smith } else { 43555a1b374SBarry Smith if (mat->was_assembled || mat->assembled) { 436905e6a2fSBarry Smith if (!aij->colmap) { 437905e6a2fSBarry Smith ierr = CreateColmap_MPIAIJ_Private(mat); CHKERRQ(ierr); 438905e6a2fSBarry Smith } 439905e6a2fSBarry Smith col = aij->colmap[col] - 1; 440ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 4412493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 442227d817aSBarry Smith col = (int) PetscReal(values[3*i+1]); 443d6dfbf8fSBarry Smith } 4449e25ed09SBarry Smith } 4456fd7127cSSatish Balay ierr = MatSetValues(aij->B,1,&row,1,&col,&val,addv); CHKERRQ(ierr); 4461eb62cbbSBarry Smith } 4471eb62cbbSBarry Smith } 4481eb62cbbSBarry Smith count--; 4491eb62cbbSBarry Smith } 450570da906SBarry Smith if (aij->recv_waits) PetscFree(aij->recv_waits); 451570da906SBarry Smith if (aij->rvalues) PetscFree(aij->rvalues); 4521eb62cbbSBarry Smith 4531eb62cbbSBarry Smith /* wait on sends */ 4541eb62cbbSBarry Smith if (aij->nsends) { 4550a198c4cSBarry Smith send_status = (MPI_Status *) PetscMalloc(aij->nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 456ca161407SBarry Smith ierr = MPI_Waitall(aij->nsends,aij->send_waits,send_status);CHKERRQ(ierr); 4570452661fSBarry Smith PetscFree(send_status); 4581eb62cbbSBarry Smith } 459b5bd3ad5SBarry Smith if (aij->send_waits) PetscFree(aij->send_waits); 460b5bd3ad5SBarry Smith if (aij->svalues) PetscFree(aij->svalues); 4611eb62cbbSBarry Smith 46278b31e54SBarry Smith ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr); 46378b31e54SBarry Smith ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr); 4641eb62cbbSBarry Smith 4652493cbb0SBarry Smith /* determine if any processor has disassembled, if so we must 4662493cbb0SBarry Smith also disassemble ourselfs, in order that we may reassemble. */ 46741e46ba1SBarry Smith /* 46841e46ba1SBarry Smith if nonzero structure of submatrix B cannot change then we know that 46941e46ba1SBarry Smith no processor disassembled thus we can skip this stuff 47041e46ba1SBarry Smith */ 47141e46ba1SBarry Smith if (!((Mat_SeqAIJ*) aij->B->data)->nonew) { 472ca161407SBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 473227d817aSBarry Smith if (mat->was_assembled && !other_disassembled) { 4742493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 4752493cbb0SBarry Smith } 47641e46ba1SBarry Smith } 4772493cbb0SBarry Smith 4786d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 47978b31e54SBarry Smith ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr); 4805e42470aSBarry Smith } 48178b31e54SBarry Smith ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr); 48278b31e54SBarry Smith ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr); 4835e42470aSBarry Smith 4847a0afa10SBarry Smith if (aij->rowvalues) {PetscFree(aij->rowvalues); aij->rowvalues = 0;} 4853a40ed3dSBarry Smith PetscFunctionReturn(0); 4868a729477SBarry Smith } 4878a729477SBarry Smith 4885615d1e5SSatish Balay #undef __FUNC__ 4895615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIAIJ" 4908f6be9afSLois Curfman McInnes int MatZeroEntries_MPIAIJ(Mat A) 4911eb62cbbSBarry Smith { 49244a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 493dbd7a890SLois Curfman McInnes int ierr; 4943a40ed3dSBarry Smith 4953a40ed3dSBarry Smith PetscFunctionBegin; 49678b31e54SBarry Smith ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 49778b31e54SBarry Smith ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 4983a40ed3dSBarry Smith PetscFunctionReturn(0); 4991eb62cbbSBarry Smith } 5001eb62cbbSBarry Smith 5015615d1e5SSatish Balay #undef __FUNC__ 5025615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIAIJ" 5038f6be9afSLois Curfman McInnes int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag) 5041eb62cbbSBarry Smith { 50544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 50617699dbbSLois Curfman McInnes int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 5076a5c57faSSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work,row; 50817699dbbSLois Curfman McInnes int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 5095392566eSBarry Smith int *rvalues,tag = A->tag,count,base,slen,n,*source; 5106a5c57faSSatish Balay int *lens,imdex,*lrows,*values,rstart=l->rstart; 511d6dfbf8fSBarry Smith MPI_Comm comm = A->comm; 5121eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 5131eb62cbbSBarry Smith MPI_Status recv_status,*send_status; 5141eb62cbbSBarry Smith IS istmp; 5156eb55b6aSBarry Smith PetscTruth localdiag; 5161eb62cbbSBarry Smith 5173a40ed3dSBarry Smith PetscFunctionBegin; 51877c4ece6SBarry Smith ierr = ISGetSize(is,&N); CHKERRQ(ierr); 51978b31e54SBarry Smith ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 5201eb62cbbSBarry Smith 5211eb62cbbSBarry Smith /* first count number of contributors to each processor */ 5220452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 523cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 5240452661fSBarry Smith owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 5251eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 5261eb62cbbSBarry Smith idx = rows[i]; 5271eb62cbbSBarry Smith found = 0; 52817699dbbSLois Curfman McInnes for ( j=0; j<size; j++ ) { 5291eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 5301eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 5311eb62cbbSBarry Smith } 5321eb62cbbSBarry Smith } 533a8c6a408SBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range"); 5341eb62cbbSBarry Smith } 53517699dbbSLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 5361eb62cbbSBarry Smith 5371eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 5380452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 539ca161407SBarry Smith ierr = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 54017699dbbSLois Curfman McInnes nrecvs = work[rank]; 541ca161407SBarry Smith ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 54217699dbbSLois Curfman McInnes nmax = work[rank]; 5430452661fSBarry Smith PetscFree(work); 5441eb62cbbSBarry Smith 5451eb62cbbSBarry Smith /* post receives: */ 5463a40ed3dSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues); 547ca161407SBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 5481eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 549ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 5501eb62cbbSBarry Smith } 5511eb62cbbSBarry Smith 5521eb62cbbSBarry Smith /* do sends: 5531eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 5541eb62cbbSBarry Smith the ith processor 5551eb62cbbSBarry Smith */ 5560452661fSBarry Smith svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 5573a40ed3dSBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 5580452661fSBarry Smith starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 5591eb62cbbSBarry Smith starts[0] = 0; 56017699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 5611eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 5621eb62cbbSBarry Smith svalues[starts[owner[i]]++] = rows[i]; 5631eb62cbbSBarry Smith } 5641eb62cbbSBarry Smith ISRestoreIndices(is,&rows); 5651eb62cbbSBarry Smith 5661eb62cbbSBarry Smith starts[0] = 0; 56717699dbbSLois Curfman McInnes for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 5681eb62cbbSBarry Smith count = 0; 56917699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 5701eb62cbbSBarry Smith if (procs[i]) { 571ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 5721eb62cbbSBarry Smith } 5731eb62cbbSBarry Smith } 5740452661fSBarry Smith PetscFree(starts); 5751eb62cbbSBarry Smith 57617699dbbSLois Curfman McInnes base = owners[rank]; 5771eb62cbbSBarry Smith 5781eb62cbbSBarry Smith /* wait on receives */ 5790452661fSBarry Smith lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 5801eb62cbbSBarry Smith source = lens + nrecvs; 5811eb62cbbSBarry Smith count = nrecvs; slen = 0; 5821eb62cbbSBarry Smith while (count) { 583ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 5841eb62cbbSBarry Smith /* unpack receives into our local space */ 585ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 586d6dfbf8fSBarry Smith source[imdex] = recv_status.MPI_SOURCE; 587d6dfbf8fSBarry Smith lens[imdex] = n; 5881eb62cbbSBarry Smith slen += n; 5891eb62cbbSBarry Smith count--; 5901eb62cbbSBarry Smith } 5910452661fSBarry Smith PetscFree(recv_waits); 5921eb62cbbSBarry Smith 5931eb62cbbSBarry Smith /* move the data into the send scatter */ 5940452661fSBarry Smith lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 5951eb62cbbSBarry Smith count = 0; 5961eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 5971eb62cbbSBarry Smith values = rvalues + i*nmax; 5981eb62cbbSBarry Smith for ( j=0; j<lens[i]; j++ ) { 5991eb62cbbSBarry Smith lrows[count++] = values[j] - base; 6001eb62cbbSBarry Smith } 6011eb62cbbSBarry Smith } 6020452661fSBarry Smith PetscFree(rvalues); PetscFree(lens); 6030452661fSBarry Smith PetscFree(owner); PetscFree(nprocs); 6041eb62cbbSBarry Smith 6051eb62cbbSBarry Smith /* actually zap the local rows */ 606029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 607464493b3SBarry Smith PLogObjectParent(A,istmp); 6086a5c57faSSatish Balay 6096eb55b6aSBarry Smith /* 6106eb55b6aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 6116eb55b6aSBarry Smith is square and the user wishes to set the diagonal we use seperate 6126eb55b6aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 6136eb55b6aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 6146eb55b6aSBarry Smith 6156eb55b6aSBarry Smith Contributed by: Mathew Knepley 6166eb55b6aSBarry Smith */ 6176eb55b6aSBarry Smith localdiag = PETSC_FALSE; 6186eb55b6aSBarry Smith if (diag && (l->A->M == l->A->N)) { 6196eb55b6aSBarry Smith localdiag = PETSC_TRUE; 6206eb55b6aSBarry Smith ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 6216eb55b6aSBarry Smith } else { 6226a5c57faSSatish Balay ierr = MatZeroRows(l->A,istmp,0); CHKERRQ(ierr); 6236eb55b6aSBarry Smith } 62478b31e54SBarry Smith ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 62578b31e54SBarry Smith ierr = ISDestroy(istmp); CHKERRQ(ierr); 6261eb62cbbSBarry Smith 6276eb55b6aSBarry Smith if (diag && (localdiag == PETSC_FALSE)) { 6286eb55b6aSBarry Smith for ( i = 0; i < slen; i++ ) { 6296eb55b6aSBarry Smith row = lrows[i] + rstart; 6306eb55b6aSBarry Smith MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES); 6316eb55b6aSBarry Smith } 6326eb55b6aSBarry Smith MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); 6336eb55b6aSBarry Smith MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); 6346eb55b6aSBarry Smith } 6356eb55b6aSBarry Smith 6366a5c57faSSatish Balay if (diag) { 6376a5c57faSSatish Balay for ( i = 0; i < slen; i++ ) { 6386a5c57faSSatish Balay row = lrows[i] + rstart; 6396a5c57faSSatish Balay MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES); 6406a5c57faSSatish Balay } 6416a5c57faSSatish Balay MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); 6426a5c57faSSatish Balay MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); 6436a5c57faSSatish Balay } 6446a5c57faSSatish Balay PetscFree(lrows); 64572dacd9aSBarry Smith 6461eb62cbbSBarry Smith /* wait on sends */ 6471eb62cbbSBarry Smith if (nsends) { 648ca161407SBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 649ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 6500452661fSBarry Smith PetscFree(send_status); 6511eb62cbbSBarry Smith } 6520452661fSBarry Smith PetscFree(send_waits); PetscFree(svalues); 6531eb62cbbSBarry Smith 6543a40ed3dSBarry Smith PetscFunctionReturn(0); 6551eb62cbbSBarry Smith } 6561eb62cbbSBarry Smith 6575615d1e5SSatish Balay #undef __FUNC__ 6585615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIAIJ" 6598f6be9afSLois Curfman McInnes int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy) 6601eb62cbbSBarry Smith { 661416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 662fbd6ef76SBarry Smith int ierr,nt; 663416022c9SBarry Smith 6643a40ed3dSBarry Smith PetscFunctionBegin; 665a2ce50c7SBarry Smith ierr = VecGetLocalSize(xx,&nt); CHKERRQ(ierr); 666fbd6ef76SBarry Smith if (nt != a->n) { 667a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx"); 668fbd6ef76SBarry Smith } 66943a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx); CHKERRQ(ierr); 670f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy); CHKERRQ(ierr); 67143a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx); CHKERRQ(ierr); 672f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 6733a40ed3dSBarry Smith PetscFunctionReturn(0); 6741eb62cbbSBarry Smith } 6751eb62cbbSBarry Smith 6765615d1e5SSatish Balay #undef __FUNC__ 6775615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIAIJ" 6788f6be9afSLois Curfman McInnes int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 679da3a660dSBarry Smith { 680416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 681da3a660dSBarry Smith int ierr; 6823a40ed3dSBarry Smith 6833a40ed3dSBarry Smith PetscFunctionBegin; 68443a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 685f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 68643a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 687f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 6883a40ed3dSBarry Smith PetscFunctionReturn(0); 689da3a660dSBarry Smith } 690da3a660dSBarry Smith 6915615d1e5SSatish Balay #undef __FUNC__ 6925615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIAIJ" 6938f6be9afSLois Curfman McInnes int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy) 694da3a660dSBarry Smith { 695416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 696da3a660dSBarry Smith int ierr; 697da3a660dSBarry Smith 6983a40ed3dSBarry Smith PetscFunctionBegin; 699da3a660dSBarry Smith /* do nondiagonal part */ 700f830108cSBarry Smith ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 701da3a660dSBarry Smith /* send it on its way */ 702537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 703da3a660dSBarry Smith /* do local part */ 704f830108cSBarry Smith ierr = (*a->A->ops->multtrans)(a->A,xx,yy); CHKERRQ(ierr); 705da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 706da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 707da3a660dSBarry Smith /* but is not perhaps always true. */ 708537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 7093a40ed3dSBarry Smith PetscFunctionReturn(0); 710da3a660dSBarry Smith } 711da3a660dSBarry Smith 7125615d1e5SSatish Balay #undef __FUNC__ 7135615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIAIJ" 7148f6be9afSLois Curfman McInnes int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 715da3a660dSBarry Smith { 716416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 717da3a660dSBarry Smith int ierr; 718da3a660dSBarry Smith 7193a40ed3dSBarry Smith PetscFunctionBegin; 720da3a660dSBarry Smith /* do nondiagonal part */ 721f830108cSBarry Smith ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 722da3a660dSBarry Smith /* send it on its way */ 723537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 724da3a660dSBarry Smith /* do local part */ 725f830108cSBarry Smith ierr = (*a->A->ops->multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 726da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 727da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 728da3a660dSBarry Smith /* but is not perhaps always true. */ 7290a198c4cSBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 7303a40ed3dSBarry Smith PetscFunctionReturn(0); 731da3a660dSBarry Smith } 732da3a660dSBarry Smith 7331eb62cbbSBarry Smith /* 7341eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 7351eb62cbbSBarry Smith diagonal block 7361eb62cbbSBarry Smith */ 7375615d1e5SSatish Balay #undef __FUNC__ 7385615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIAIJ" 7398f6be9afSLois Curfman McInnes int MatGetDiagonal_MPIAIJ(Mat A,Vec v) 7401eb62cbbSBarry Smith { 7413a40ed3dSBarry Smith int ierr; 742416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 7433a40ed3dSBarry Smith 7443a40ed3dSBarry Smith PetscFunctionBegin; 745a8c6a408SBarry Smith if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block"); 7465baf8537SBarry Smith if (a->rstart != a->cstart || a->rend != a->cend) { 747a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"row partition must equal col partition"); 7483a40ed3dSBarry Smith } 7493a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 7503a40ed3dSBarry Smith PetscFunctionReturn(0); 7511eb62cbbSBarry Smith } 7521eb62cbbSBarry Smith 7535615d1e5SSatish Balay #undef __FUNC__ 7545615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIAIJ" 7558f6be9afSLois Curfman McInnes int MatScale_MPIAIJ(Scalar *aa,Mat A) 756052efed2SBarry Smith { 757052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 758052efed2SBarry Smith int ierr; 7593a40ed3dSBarry Smith 7603a40ed3dSBarry Smith PetscFunctionBegin; 761052efed2SBarry Smith ierr = MatScale(aa,a->A); CHKERRQ(ierr); 762052efed2SBarry Smith ierr = MatScale(aa,a->B); CHKERRQ(ierr); 7633a40ed3dSBarry Smith PetscFunctionReturn(0); 764052efed2SBarry Smith } 765052efed2SBarry Smith 7665615d1e5SSatish Balay #undef __FUNC__ 767d4bb536fSBarry Smith #define __FUNC__ "MatDestroy_MPIAIJ" 768e1311b90SBarry Smith int MatDestroy_MPIAIJ(Mat mat) 7691eb62cbbSBarry Smith { 77044a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 7711eb62cbbSBarry Smith int ierr; 77283e2fdc7SBarry Smith 7733a40ed3dSBarry Smith PetscFunctionBegin; 77470429bc8SBarry Smith if (--mat->refct > 0) PetscFunctionReturn(0); 77570429bc8SBarry Smith 77670429bc8SBarry Smith if (mat->mapping) { 77770429bc8SBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->mapping); CHKERRQ(ierr); 77870429bc8SBarry Smith } 77970429bc8SBarry Smith if (mat->bmapping) { 78070429bc8SBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->bmapping); CHKERRQ(ierr); 78170429bc8SBarry Smith } 7823a40ed3dSBarry Smith #if defined(USE_PETSC_LOG) 783e1311b90SBarry Smith PLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",aij->M,aij->N); 784a5a9c739SBarry Smith #endif 78583e2fdc7SBarry Smith ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr); 7860452661fSBarry Smith PetscFree(aij->rowners); 78778b31e54SBarry Smith ierr = MatDestroy(aij->A); CHKERRQ(ierr); 78878b31e54SBarry Smith ierr = MatDestroy(aij->B); CHKERRQ(ierr); 7890452661fSBarry Smith if (aij->colmap) PetscFree(aij->colmap); 7900452661fSBarry Smith if (aij->garray) PetscFree(aij->garray); 7911eb62cbbSBarry Smith if (aij->lvec) VecDestroy(aij->lvec); 792a56f8943SBarry Smith if (aij->Mvctx) VecScatterDestroy(aij->Mvctx); 7937a0afa10SBarry Smith if (aij->rowvalues) PetscFree(aij->rowvalues); 7940452661fSBarry Smith PetscFree(aij); 795a5a9c739SBarry Smith PLogObjectDestroy(mat); 7960452661fSBarry Smith PetscHeaderDestroy(mat); 7973a40ed3dSBarry Smith PetscFunctionReturn(0); 7981eb62cbbSBarry Smith } 799ee50ffe9SBarry Smith 8005615d1e5SSatish Balay #undef __FUNC__ 801d4bb536fSBarry Smith #define __FUNC__ "MatView_MPIAIJ_Binary" 8028f6be9afSLois Curfman McInnes extern int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer) 8031eb62cbbSBarry Smith { 804416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 805416022c9SBarry Smith int ierr; 806416022c9SBarry Smith 8073a40ed3dSBarry Smith PetscFunctionBegin; 80817699dbbSLois Curfman McInnes if (aij->size == 1) { 809416022c9SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 810416022c9SBarry Smith } 811a8c6a408SBarry Smith else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported"); 8123a40ed3dSBarry Smith PetscFunctionReturn(0); 813416022c9SBarry Smith } 814416022c9SBarry Smith 8155615d1e5SSatish Balay #undef __FUNC__ 816d4bb536fSBarry Smith #define __FUNC__ "MatView_MPIAIJ_ASCIIorDraworMatlab" 8178f6be9afSLois Curfman McInnes extern int MatView_MPIAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer) 818416022c9SBarry Smith { 81944a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 820dbb450caSBarry Smith Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data; 821a56f8943SBarry Smith int ierr, format,shift = C->indexshift,rank; 822d636dbe3SBarry Smith FILE *fd; 82319bcc07fSBarry Smith ViewerType vtype; 824416022c9SBarry Smith 8253a40ed3dSBarry Smith PetscFunctionBegin; 82619bcc07fSBarry Smith ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 82719bcc07fSBarry Smith if (vtype == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) { 82890ace30eSBarry Smith ierr = ViewerGetFormat(viewer,&format); 8290a198c4cSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 8304e220ebcSLois Curfman McInnes MatInfo info; 8314e220ebcSLois Curfman McInnes int flg; 832a56f8943SBarry Smith MPI_Comm_rank(mat->comm,&rank); 83390ace30eSBarry Smith ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 8344e220ebcSLois Curfman McInnes ierr = MatGetInfo(mat,MAT_LOCAL,&info); 83595e01e2fSLois Curfman McInnes ierr = OptionsHasName(PETSC_NULL,"-mat_aij_no_inode",&flg); CHKERRQ(ierr); 83677c4ece6SBarry Smith PetscSequentialPhaseBegin(mat->comm,1); 83795e01e2fSLois Curfman McInnes if (flg) fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d, not using I-node routines\n", 8384e220ebcSLois Curfman McInnes rank,aij->m,(int)info.nz_used,(int)info.nz_allocated,(int)info.memory); 83995e01e2fSLois Curfman McInnes else fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d, using I-node routines\n", 8404e220ebcSLois Curfman McInnes rank,aij->m,(int)info.nz_used,(int)info.nz_allocated,(int)info.memory); 8414e220ebcSLois Curfman McInnes ierr = MatGetInfo(aij->A,MAT_LOCAL,&info); 8424e220ebcSLois Curfman McInnes fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used); 8434e220ebcSLois Curfman McInnes ierr = MatGetInfo(aij->B,MAT_LOCAL,&info); 8444e220ebcSLois Curfman McInnes fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used); 845a56f8943SBarry Smith fflush(fd); 84677c4ece6SBarry Smith PetscSequentialPhaseEnd(mat->comm,1); 847a40aa06bSLois Curfman McInnes ierr = VecScatterView(aij->Mvctx,viewer); CHKERRQ(ierr); 8483a40ed3dSBarry Smith PetscFunctionReturn(0); 8493a40ed3dSBarry Smith } else if (format == VIEWER_FORMAT_ASCII_INFO) { 8503a40ed3dSBarry Smith PetscFunctionReturn(0); 85108480c60SBarry Smith } 852416022c9SBarry Smith } 853416022c9SBarry Smith 85419bcc07fSBarry Smith if (vtype == DRAW_VIEWER) { 85519bcc07fSBarry Smith Draw draw; 85619bcc07fSBarry Smith PetscTruth isnull; 85719bcc07fSBarry Smith ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr); 8583a40ed3dSBarry Smith ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 85919bcc07fSBarry Smith } 86019bcc07fSBarry Smith 86119bcc07fSBarry Smith if (vtype == ASCII_FILE_VIEWER) { 86290ace30eSBarry Smith ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 86377c4ece6SBarry Smith PetscSequentialPhaseBegin(mat->comm,1); 864d13ab20cSBarry Smith fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 86517699dbbSLois Curfman McInnes aij->rank,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart, 8661eb62cbbSBarry Smith aij->cend); 86778b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 86878b31e54SBarry Smith ierr = MatView(aij->B,viewer); CHKERRQ(ierr); 869d13ab20cSBarry Smith fflush(fd); 87077c4ece6SBarry Smith PetscSequentialPhaseEnd(mat->comm,1); 8713a40ed3dSBarry Smith } else { 872a56f8943SBarry Smith int size = aij->size; 873a56f8943SBarry Smith rank = aij->rank; 87417699dbbSLois Curfman McInnes if (size == 1) { 87578b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 8763a40ed3dSBarry Smith } else { 87795373324SBarry Smith /* assemble the entire matrix onto first processor. */ 87895373324SBarry Smith Mat A; 879ec8511deSBarry Smith Mat_SeqAIJ *Aloc; 8802eb8c8abSBarry Smith int M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct; 88195373324SBarry Smith Scalar *a; 8822ee70a88SLois Curfman McInnes 88317699dbbSLois Curfman McInnes if (!rank) { 88455843e3eSBarry Smith ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 8853a40ed3dSBarry Smith } else { 88655843e3eSBarry Smith ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 88795373324SBarry Smith } 888464493b3SBarry Smith PLogObjectParent(mat,A); 889416022c9SBarry Smith 89095373324SBarry Smith /* copy over the A part */ 891ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->A->data; 8922ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 89395373324SBarry Smith row = aij->rstart; 894dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;} 89595373324SBarry Smith for ( i=0; i<m; i++ ) { 896416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr); 89795373324SBarry Smith row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 89895373324SBarry Smith } 8992ee70a88SLois Curfman McInnes aj = Aloc->j; 900dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;} 90195373324SBarry Smith 90295373324SBarry Smith /* copy over the B part */ 903ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->B->data; 9042ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 90595373324SBarry Smith row = aij->rstart; 9060452661fSBarry Smith ct = cols = (int *) PetscMalloc( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols); 907dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];} 90895373324SBarry Smith for ( i=0; i<m; i++ ) { 909416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr); 91095373324SBarry Smith row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 91195373324SBarry Smith } 9120452661fSBarry Smith PetscFree(ct); 9136d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 9146d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 91555843e3eSBarry Smith /* 91655843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 91755843e3eSBarry Smith synchronized across all processors that share the Draw object 91855843e3eSBarry Smith */ 91955843e3eSBarry Smith if (!rank || vtype == DRAW_VIEWER) { 92078b31e54SBarry Smith ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 92195373324SBarry Smith } 92278b31e54SBarry Smith ierr = MatDestroy(A); CHKERRQ(ierr); 92395373324SBarry Smith } 92495373324SBarry Smith } 9253a40ed3dSBarry Smith PetscFunctionReturn(0); 9261eb62cbbSBarry Smith } 9271eb62cbbSBarry Smith 9285615d1e5SSatish Balay #undef __FUNC__ 929d4bb536fSBarry Smith #define __FUNC__ "MatView_MPIAIJ" 930e1311b90SBarry Smith int MatView_MPIAIJ(Mat mat,Viewer viewer) 931416022c9SBarry Smith { 932416022c9SBarry Smith int ierr; 93319bcc07fSBarry Smith ViewerType vtype; 934416022c9SBarry Smith 9353a40ed3dSBarry Smith PetscFunctionBegin; 93619bcc07fSBarry Smith ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 93719bcc07fSBarry Smith if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER || 93819bcc07fSBarry Smith vtype == DRAW_VIEWER || vtype == MATLAB_VIEWER) { 939d7e8b826SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 9405cd90555SBarry Smith } else if (vtype == BINARY_FILE_VIEWER) { 9413a40ed3dSBarry Smith ierr = MatView_MPIAIJ_Binary(mat,viewer);CHKERRQ(ierr); 9425cd90555SBarry Smith } else { 9435cd90555SBarry Smith SETERRQ(1,1,"Viewer type not supported by PETSc object"); 944416022c9SBarry Smith } 9453a40ed3dSBarry Smith PetscFunctionReturn(0); 946416022c9SBarry Smith } 947416022c9SBarry Smith 9481eb62cbbSBarry Smith /* 9491eb62cbbSBarry Smith This has to provide several versions. 9501eb62cbbSBarry Smith 9511eb62cbbSBarry Smith 2) a) use only local smoothing updating outer values only once. 9521eb62cbbSBarry Smith b) local smoothing updating outer values each inner iteration 953d6dfbf8fSBarry Smith 3) color updating out values betwen colors. 9541eb62cbbSBarry Smith */ 9555615d1e5SSatish Balay #undef __FUNC__ 9565615d1e5SSatish Balay #define __FUNC__ "MatRelax_MPIAIJ" 9578f6be9afSLois Curfman McInnes int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag, 958dbb450caSBarry Smith double fshift,int its,Vec xx) 9598a729477SBarry Smith { 96044a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 961d6dfbf8fSBarry Smith Mat AA = mat->A, BB = mat->B; 962ec8511deSBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data; 963c16cb8f2SBarry Smith Scalar *b,*x,*xs,*ls,d,*v,sum; 9646abc6512SBarry Smith int ierr,*idx, *diag; 965416022c9SBarry Smith int n = mat->n, m = mat->m, i,shift = A->indexshift; 9668a729477SBarry Smith 9673a40ed3dSBarry Smith PetscFunctionBegin; 968d6dfbf8fSBarry Smith VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls); 969dbb450caSBarry Smith xs = x + shift; /* shift by one for index start of 1 */ 970dbb450caSBarry Smith ls = ls + shift; 97183e2fdc7SBarry Smith if (!A->diag) {ierr = MatMarkDiag_SeqAIJ(AA); CHKERRQ(ierr);} 972d6dfbf8fSBarry Smith diag = A->diag; 973c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 974da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 975f830108cSBarry Smith ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,its,xx);CHKERRQ(ierr); 9763a40ed3dSBarry Smith PetscFunctionReturn(0); 977da3a660dSBarry Smith } 9783a40ed3dSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 9793a40ed3dSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 980d6dfbf8fSBarry Smith while (its--) { 981d6dfbf8fSBarry Smith /* go down through the rows */ 982d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 983d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 984dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 985dbb450caSBarry Smith v = A->a + A->i[i] + shift; 986d6dfbf8fSBarry Smith sum = b[i]; 987d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 988dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 989d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 990dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 991dbb450caSBarry Smith v = B->a + B->i[i] + shift; 992d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 99355a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d; 994d6dfbf8fSBarry Smith } 995d6dfbf8fSBarry Smith /* come up through the rows */ 996d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 997d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 998dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 999dbb450caSBarry Smith v = A->a + A->i[i] + shift; 1000d6dfbf8fSBarry Smith sum = b[i]; 1001d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 1002dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 1003d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 1004dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 1005dbb450caSBarry Smith v = B->a + B->i[i] + shift; 1006d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 100755a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d; 1008d6dfbf8fSBarry Smith } 1009d6dfbf8fSBarry Smith } 10103a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 1011da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 1012f830108cSBarry Smith ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,its,xx);CHKERRQ(ierr); 10133a40ed3dSBarry Smith PetscFunctionReturn(0); 1014da3a660dSBarry Smith } 10153a40ed3dSBarry Smith ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 10163a40ed3dSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 1017d6dfbf8fSBarry Smith while (its--) { 1018d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 1019d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 1020dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 1021dbb450caSBarry Smith v = A->a + A->i[i] + shift; 1022d6dfbf8fSBarry Smith sum = b[i]; 1023d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 1024dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 1025d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 1026dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 1027dbb450caSBarry Smith v = B->a + B->i[i] + shift; 1028d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 102955a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d; 1030d6dfbf8fSBarry Smith } 1031d6dfbf8fSBarry Smith } 10323a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 1033da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 1034f830108cSBarry Smith ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,its,xx);CHKERRQ(ierr); 10353a40ed3dSBarry Smith PetscFunctionReturn(0); 1036da3a660dSBarry Smith } 103743a90d84SBarry Smith ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD, 103878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 103943a90d84SBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD, 104078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 1041d6dfbf8fSBarry Smith while (its--) { 1042d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 1043d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 1044dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 1045dbb450caSBarry Smith v = A->a + A->i[i] + shift; 1046d6dfbf8fSBarry Smith sum = b[i]; 1047d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 1048dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 1049d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 1050dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 1051dbb450caSBarry Smith v = B->a + B->i[i] + shift; 1052d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 105355a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d; 1054d6dfbf8fSBarry Smith } 1055d6dfbf8fSBarry Smith } 10563a40ed3dSBarry Smith } else { 1057a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Parallel SOR not supported"); 1058c16cb8f2SBarry Smith } 10593a40ed3dSBarry Smith PetscFunctionReturn(0); 10608a729477SBarry Smith } 1061a66be287SLois Curfman McInnes 10625615d1e5SSatish Balay #undef __FUNC__ 1063d4bb536fSBarry Smith #define __FUNC__ "MatGetInfo_MPIAIJ" 10648f6be9afSLois Curfman McInnes int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1065a66be287SLois Curfman McInnes { 1066a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1067a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 10684e220ebcSLois Curfman McInnes int ierr; 10694e220ebcSLois Curfman McInnes double isend[5], irecv[5]; 1070a66be287SLois Curfman McInnes 10713a40ed3dSBarry Smith PetscFunctionBegin; 10724e220ebcSLois Curfman McInnes info->block_size = 1.0; 10734e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info); CHKERRQ(ierr); 10744e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 10754e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 10764e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info); CHKERRQ(ierr); 10774e220ebcSLois Curfman McInnes isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 10784e220ebcSLois Curfman McInnes isend[3] += info->memory; isend[4] += info->mallocs; 1079a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 10804e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 10814e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 10824e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 10834e220ebcSLois Curfman McInnes info->memory = isend[3]; 10844e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1085a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1086ca161407SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 10874e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 10884e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 10894e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 10904e220ebcSLois Curfman McInnes info->memory = irecv[3]; 10914e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1092a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1093ca161407SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 10944e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 10954e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 10964e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 10974e220ebcSLois Curfman McInnes info->memory = irecv[3]; 10984e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1099a66be287SLois Curfman McInnes } 11004e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 11014e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 11024e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 11038d700155SBarry Smith info->rows_global = (double)mat->M; 11048d700155SBarry Smith info->columns_global = (double)mat->N; 11058d700155SBarry Smith info->rows_local = (double)mat->m; 11068d700155SBarry Smith info->columns_local = (double)mat->N; 11074e220ebcSLois Curfman McInnes 11083a40ed3dSBarry Smith PetscFunctionReturn(0); 1109a66be287SLois Curfman McInnes } 1110a66be287SLois Curfman McInnes 11115615d1e5SSatish Balay #undef __FUNC__ 1112d4bb536fSBarry Smith #define __FUNC__ "MatSetOption_MPIAIJ" 11138f6be9afSLois Curfman McInnes int MatSetOption_MPIAIJ(Mat A,MatOption op) 1114c74985f6SBarry Smith { 1115c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1116c74985f6SBarry Smith 11173a40ed3dSBarry Smith PetscFunctionBegin; 11186d4a8577SBarry Smith if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 11196d4a8577SBarry Smith op == MAT_YES_NEW_NONZERO_LOCATIONS || 11206da5968aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED || 1121c2653b3dSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 112296854ed6SLois Curfman McInnes op == MAT_NEW_NONZERO_ALLOCATION_ERROR || 1123c2653b3dSLois Curfman McInnes op == MAT_NEW_NONZERO_LOCATION_ERROR) { 1124b1fbbac0SLois Curfman McInnes MatSetOption(a->A,op); 1125b1fbbac0SLois Curfman McInnes MatSetOption(a->B,op); 1126b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 1127aeafbbfcSLois Curfman McInnes a->roworiented = 1; 1128c0bbcb79SLois Curfman McInnes MatSetOption(a->A,op); 1129c0bbcb79SLois Curfman McInnes MatSetOption(a->B,op); 1130b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 11316da5968aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 11326d4a8577SBarry Smith op == MAT_SYMMETRIC || 11336d4a8577SBarry Smith op == MAT_STRUCTURALLY_SYMMETRIC || 11346d4a8577SBarry Smith op == MAT_YES_NEW_DIAGONALS) 1135981c4779SBarry Smith PLogInfo(A,"MatSetOption_MPIAIJ:Option ignored\n"); 11366d4a8577SBarry Smith else if (op == MAT_COLUMN_ORIENTED) { 11374b0e389bSBarry Smith a->roworiented = 0; 11384b0e389bSBarry Smith MatSetOption(a->A,op); 11394b0e389bSBarry Smith MatSetOption(a->B,op); 11402b362799SSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 114190f02eecSBarry Smith a->donotstash = 1; 11423a40ed3dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS){ 11433a40ed3dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 11443a40ed3dSBarry Smith } else { 11453a40ed3dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 11463a40ed3dSBarry Smith } 11473a40ed3dSBarry Smith PetscFunctionReturn(0); 1148c74985f6SBarry Smith } 1149c74985f6SBarry Smith 11505615d1e5SSatish Balay #undef __FUNC__ 1151d4bb536fSBarry Smith #define __FUNC__ "MatGetSize_MPIAIJ" 11528f6be9afSLois Curfman McInnes int MatGetSize_MPIAIJ(Mat matin,int *m,int *n) 1153c74985f6SBarry Smith { 115444a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 11553a40ed3dSBarry Smith 11563a40ed3dSBarry Smith PetscFunctionBegin; 11570752156aSBarry Smith if (m) *m = mat->M; 11580752156aSBarry Smith if (n) *n = mat->N; 11593a40ed3dSBarry Smith PetscFunctionReturn(0); 1160c74985f6SBarry Smith } 1161c74985f6SBarry Smith 11625615d1e5SSatish Balay #undef __FUNC__ 1163d4bb536fSBarry Smith #define __FUNC__ "MatGetLocalSize_MPIAIJ" 11648f6be9afSLois Curfman McInnes int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n) 1165c74985f6SBarry Smith { 116644a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 11673a40ed3dSBarry Smith 11683a40ed3dSBarry Smith PetscFunctionBegin; 11690752156aSBarry Smith if (m) *m = mat->m; 1170f830108cSBarry Smith if (n) *n = mat->n; 11713a40ed3dSBarry Smith PetscFunctionReturn(0); 1172c74985f6SBarry Smith } 1173c74985f6SBarry Smith 11745615d1e5SSatish Balay #undef __FUNC__ 1175d4bb536fSBarry Smith #define __FUNC__ "MatGetOwnershipRange_MPIAIJ" 11768f6be9afSLois Curfman McInnes int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n) 1177c74985f6SBarry Smith { 117844a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 11793a40ed3dSBarry Smith 11803a40ed3dSBarry Smith PetscFunctionBegin; 1181c74985f6SBarry Smith *m = mat->rstart; *n = mat->rend; 11823a40ed3dSBarry Smith PetscFunctionReturn(0); 1183c74985f6SBarry Smith } 1184c74985f6SBarry Smith 11856d84be18SBarry Smith extern int MatGetRow_SeqAIJ(Mat,int,int*,int**,Scalar**); 11866d84be18SBarry Smith extern int MatRestoreRow_SeqAIJ(Mat,int,int*,int**,Scalar**); 11876d84be18SBarry Smith 11885615d1e5SSatish Balay #undef __FUNC__ 11895615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIAIJ" 11906d84be18SBarry Smith int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 119139e00950SLois Curfman McInnes { 1192154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 119370f0671dSBarry Smith Scalar *vworkA, *vworkB, **pvA, **pvB,*v_p; 1194154123eaSLois Curfman McInnes int i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart; 1195154123eaSLois Curfman McInnes int nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend; 119670f0671dSBarry Smith int *cmap, *idx_p; 119739e00950SLois Curfman McInnes 11983a40ed3dSBarry Smith PetscFunctionBegin; 1199a8c6a408SBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active"); 12007a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 12017a0afa10SBarry Smith 120270f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 12037a0afa10SBarry Smith /* 12047a0afa10SBarry Smith allocate enough space to hold information from the longest row. 12057a0afa10SBarry Smith */ 12067a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *) mat->A->data,*Ba = (Mat_SeqAIJ *) mat->B->data; 1207c16cb8f2SBarry Smith int max = 1,m = mat->m,tmp; 1208c16cb8f2SBarry Smith for ( i=0; i<m; i++ ) { 12097a0afa10SBarry Smith tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 12107a0afa10SBarry Smith if (max < tmp) { max = tmp; } 12117a0afa10SBarry Smith } 12127a0afa10SBarry Smith mat->rowvalues = (Scalar *) PetscMalloc( max*(sizeof(int)+sizeof(Scalar))); 12137a0afa10SBarry Smith CHKPTRQ(mat->rowvalues); 12147a0afa10SBarry Smith mat->rowindices = (int *) (mat->rowvalues + max); 12157a0afa10SBarry Smith } 12167a0afa10SBarry Smith 1217a8c6a408SBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Only local rows") 1218abc0e9e4SLois Curfman McInnes lrow = row - rstart; 121939e00950SLois Curfman McInnes 1220154123eaSLois Curfman McInnes pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1221154123eaSLois Curfman McInnes if (!v) {pvA = 0; pvB = 0;} 1222154123eaSLois Curfman McInnes if (!idx) {pcA = 0; if (!v) pcB = 0;} 1223f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 1224f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 1225154123eaSLois Curfman McInnes nztot = nzA + nzB; 1226154123eaSLois Curfman McInnes 122770f0671dSBarry Smith cmap = mat->garray; 1228154123eaSLois Curfman McInnes if (v || idx) { 1229154123eaSLois Curfman McInnes if (nztot) { 1230154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 123170f0671dSBarry Smith int imark = -1; 1232154123eaSLois Curfman McInnes if (v) { 123370f0671dSBarry Smith *v = v_p = mat->rowvalues; 123439e00950SLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 123570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1236154123eaSLois Curfman McInnes else break; 1237154123eaSLois Curfman McInnes } 1238154123eaSLois Curfman McInnes imark = i; 123970f0671dSBarry Smith for ( i=0; i<nzA; i++ ) v_p[imark+i] = vworkA[i]; 124070f0671dSBarry Smith for ( i=imark; i<nzB; i++ ) v_p[nzA+i] = vworkB[i]; 1241154123eaSLois Curfman McInnes } 1242154123eaSLois Curfman McInnes if (idx) { 124370f0671dSBarry Smith *idx = idx_p = mat->rowindices; 124470f0671dSBarry Smith if (imark > -1) { 124570f0671dSBarry Smith for ( i=0; i<imark; i++ ) { 124670f0671dSBarry Smith idx_p[i] = cmap[cworkB[i]]; 124770f0671dSBarry Smith } 124870f0671dSBarry Smith } else { 1249154123eaSLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 125070f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1251154123eaSLois Curfman McInnes else break; 1252154123eaSLois Curfman McInnes } 1253154123eaSLois Curfman McInnes imark = i; 125470f0671dSBarry Smith } 125570f0671dSBarry Smith for ( i=0; i<nzA; i++ ) idx_p[imark+i] = cstart + cworkA[i]; 125670f0671dSBarry Smith for ( i=imark; i<nzB; i++ ) idx_p[nzA+i] = cmap[cworkB[i]]; 125739e00950SLois Curfman McInnes } 125839e00950SLois Curfman McInnes } 12591ca473b0SSatish Balay else { 12601ca473b0SSatish Balay if (idx) *idx = 0; 12611ca473b0SSatish Balay if (v) *v = 0; 12621ca473b0SSatish Balay } 1263154123eaSLois Curfman McInnes } 126439e00950SLois Curfman McInnes *nz = nztot; 1265f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 1266f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 12673a40ed3dSBarry Smith PetscFunctionReturn(0); 126839e00950SLois Curfman McInnes } 126939e00950SLois Curfman McInnes 12705615d1e5SSatish Balay #undef __FUNC__ 1271d4bb536fSBarry Smith #define __FUNC__ "MatRestoreRow_MPIAIJ" 12726d84be18SBarry Smith int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 127339e00950SLois Curfman McInnes { 12747a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 12753a40ed3dSBarry Smith 12763a40ed3dSBarry Smith PetscFunctionBegin; 12777a0afa10SBarry Smith if (aij->getrowactive == PETSC_FALSE) { 1278a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called"); 12797a0afa10SBarry Smith } 12807a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 12813a40ed3dSBarry Smith PetscFunctionReturn(0); 128239e00950SLois Curfman McInnes } 128339e00950SLois Curfman McInnes 12845615d1e5SSatish Balay #undef __FUNC__ 12855615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIAIJ" 12868f6be9afSLois Curfman McInnes int MatNorm_MPIAIJ(Mat mat,NormType type,double *norm) 1287855ac2c5SLois Curfman McInnes { 1288855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1289ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data; 1290416022c9SBarry Smith int ierr, i, j, cstart = aij->cstart,shift = amat->indexshift; 1291416022c9SBarry Smith double sum = 0.0; 129204ca555eSLois Curfman McInnes Scalar *v; 129304ca555eSLois Curfman McInnes 12943a40ed3dSBarry Smith PetscFunctionBegin; 129517699dbbSLois Curfman McInnes if (aij->size == 1) { 129614183eadSLois Curfman McInnes ierr = MatNorm(aij->A,type,norm); CHKERRQ(ierr); 129737fa93a5SLois Curfman McInnes } else { 129804ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 129904ca555eSLois Curfman McInnes v = amat->a; 130004ca555eSLois Curfman McInnes for (i=0; i<amat->nz; i++ ) { 13013a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 1302e20fef11SSatish Balay sum += PetscReal(PetscConj(*v)*(*v)); v++; 130304ca555eSLois Curfman McInnes #else 130404ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 130504ca555eSLois Curfman McInnes #endif 130604ca555eSLois Curfman McInnes } 130704ca555eSLois Curfman McInnes v = bmat->a; 130804ca555eSLois Curfman McInnes for (i=0; i<bmat->nz; i++ ) { 13093a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 1310e20fef11SSatish Balay sum += PetscReal(PetscConj(*v)*(*v)); v++; 131104ca555eSLois Curfman McInnes #else 131204ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 131304ca555eSLois Curfman McInnes #endif 131404ca555eSLois Curfman McInnes } 1315ca161407SBarry Smith ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 131604ca555eSLois Curfman McInnes *norm = sqrt(*norm); 13173a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 131804ca555eSLois Curfman McInnes double *tmp, *tmp2; 131904ca555eSLois Curfman McInnes int *jj, *garray = aij->garray; 1320758f045eSSatish Balay tmp = (double *) PetscMalloc( (aij->N+1)*sizeof(double) ); CHKPTRQ(tmp); 1321758f045eSSatish Balay tmp2 = (double *) PetscMalloc( (aij->N+1)*sizeof(double) ); CHKPTRQ(tmp2); 1322cddf8d76SBarry Smith PetscMemzero(tmp,aij->N*sizeof(double)); 132304ca555eSLois Curfman McInnes *norm = 0.0; 132404ca555eSLois Curfman McInnes v = amat->a; jj = amat->j; 132504ca555eSLois Curfman McInnes for ( j=0; j<amat->nz; j++ ) { 1326579c6b6fSBarry Smith tmp[cstart + *jj++ + shift] += PetscAbsScalar(*v); v++; 132704ca555eSLois Curfman McInnes } 132804ca555eSLois Curfman McInnes v = bmat->a; jj = bmat->j; 132904ca555eSLois Curfman McInnes for ( j=0; j<bmat->nz; j++ ) { 1330579c6b6fSBarry Smith tmp[garray[*jj++ + shift]] += PetscAbsScalar(*v); v++; 133104ca555eSLois Curfman McInnes } 1332ca161407SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 133304ca555eSLois Curfman McInnes for ( j=0; j<aij->N; j++ ) { 133404ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 133504ca555eSLois Curfman McInnes } 13360452661fSBarry Smith PetscFree(tmp); PetscFree(tmp2); 13373a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1338515d9167SLois Curfman McInnes double ntemp = 0.0; 133904ca555eSLois Curfman McInnes for ( j=0; j<amat->m; j++ ) { 1340dbb450caSBarry Smith v = amat->a + amat->i[j] + shift; 134104ca555eSLois Curfman McInnes sum = 0.0; 134204ca555eSLois Curfman McInnes for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) { 1343cddf8d76SBarry Smith sum += PetscAbsScalar(*v); v++; 134404ca555eSLois Curfman McInnes } 1345dbb450caSBarry Smith v = bmat->a + bmat->i[j] + shift; 134604ca555eSLois Curfman McInnes for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) { 1347cddf8d76SBarry Smith sum += PetscAbsScalar(*v); v++; 134804ca555eSLois Curfman McInnes } 1349515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 135004ca555eSLois Curfman McInnes } 1351ca161407SBarry Smith ierr = MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,mat->comm);CHKERRQ(ierr); 1352ca161407SBarry Smith } else { 1353a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for two norm"); 135404ca555eSLois Curfman McInnes } 135537fa93a5SLois Curfman McInnes } 13563a40ed3dSBarry Smith PetscFunctionReturn(0); 1357855ac2c5SLois Curfman McInnes } 1358855ac2c5SLois Curfman McInnes 13595615d1e5SSatish Balay #undef __FUNC__ 13605615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIAIJ" 13618f6be9afSLois Curfman McInnes int MatTranspose_MPIAIJ(Mat A,Mat *matout) 1362b7c46309SBarry Smith { 1363b7c46309SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1364dbb450caSBarry Smith Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data; 1365416022c9SBarry Smith int ierr,shift = Aloc->indexshift; 1366b7c46309SBarry Smith int M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct; 13673a40ed3dSBarry Smith Mat B; 1368b7c46309SBarry Smith Scalar *array; 1369b7c46309SBarry Smith 13703a40ed3dSBarry Smith PetscFunctionBegin; 1371d4bb536fSBarry Smith if (matout == PETSC_NULL && M != N) { 1372a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place"); 1373d4bb536fSBarry Smith } 1374d4bb536fSBarry Smith 1375d4bb536fSBarry Smith ierr = MatCreateMPIAIJ(A->comm,a->n,a->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);CHKERRQ(ierr); 1376b7c46309SBarry Smith 1377b7c46309SBarry Smith /* copy over the A part */ 1378ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->A->data; 1379b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1380b7c46309SBarry Smith row = a->rstart; 1381dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;} 1382b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1383416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1384b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 1385b7c46309SBarry Smith } 1386b7c46309SBarry Smith aj = Aloc->j; 13874af08d9eSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= a->cstart + shift;} 1388b7c46309SBarry Smith 1389b7c46309SBarry Smith /* copy over the B part */ 1390ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->B->data; 1391b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1392b7c46309SBarry Smith row = a->rstart; 13930452661fSBarry Smith ct = cols = (int *) PetscMalloc( (1+ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols); 1394dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];} 1395b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1396416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1397b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 1398b7c46309SBarry Smith } 13990452661fSBarry Smith PetscFree(ct); 14006d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 14016d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 14023638b69dSLois Curfman McInnes if (matout != PETSC_NULL) { 14030de55854SLois Curfman McInnes *matout = B; 14040de55854SLois Curfman McInnes } else { 1405f830108cSBarry Smith PetscOps *Abops; 1406f830108cSBarry Smith struct _MatOps *Aops; 1407f830108cSBarry Smith 14080de55854SLois Curfman McInnes /* This isn't really an in-place transpose .... but free data structures from a */ 14090452661fSBarry Smith PetscFree(a->rowners); 14100de55854SLois Curfman McInnes ierr = MatDestroy(a->A); CHKERRQ(ierr); 14110de55854SLois Curfman McInnes ierr = MatDestroy(a->B); CHKERRQ(ierr); 14120452661fSBarry Smith if (a->colmap) PetscFree(a->colmap); 14130452661fSBarry Smith if (a->garray) PetscFree(a->garray); 14140de55854SLois Curfman McInnes if (a->lvec) VecDestroy(a->lvec); 1415a56f8943SBarry Smith if (a->Mvctx) VecScatterDestroy(a->Mvctx); 14160452661fSBarry Smith PetscFree(a); 1417f830108cSBarry Smith 1418f830108cSBarry Smith /* 1419f830108cSBarry Smith This is horrible, horrible code. We need to keep the 1420f830108cSBarry Smith A pointers for the bops and ops but copy everything 1421f830108cSBarry Smith else from C. 1422f830108cSBarry Smith */ 1423f830108cSBarry Smith Abops = A->bops; 1424f830108cSBarry Smith Aops = A->ops; 1425f09e8eb9SSatish Balay PetscMemcpy(A,B,sizeof(struct _p_Mat)); 1426f830108cSBarry Smith A->bops = Abops; 1427f830108cSBarry Smith A->ops = Aops; 14280452661fSBarry Smith PetscHeaderDestroy(B); 14290de55854SLois Curfman McInnes } 14303a40ed3dSBarry Smith PetscFunctionReturn(0); 1431b7c46309SBarry Smith } 1432b7c46309SBarry Smith 14335615d1e5SSatish Balay #undef __FUNC__ 14345615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIAIJ" 14354b967eb1SSatish Balay int MatDiagonalScale_MPIAIJ(Mat mat,Vec ll,Vec rr) 1436a008b906SSatish Balay { 14374b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 14384b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1439a008b906SSatish Balay int ierr,s1,s2,s3; 1440a008b906SSatish Balay 14413a40ed3dSBarry Smith PetscFunctionBegin; 14424b967eb1SSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3); CHKERRQ(ierr); 14434b967eb1SSatish Balay if (rr) { 1444e1311b90SBarry Smith ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1445a8c6a408SBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,0,"right vector non-conforming local size"); 14464b967eb1SSatish Balay /* Overlap communication with computation. */ 144743a90d84SBarry Smith ierr = VecScatterBegin(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx); CHKERRQ(ierr); 1448a008b906SSatish Balay } 14494b967eb1SSatish Balay if (ll) { 1450e1311b90SBarry Smith ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1451a8c6a408SBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"left vector non-conforming local size"); 1452f830108cSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,0); CHKERRQ(ierr); 14534b967eb1SSatish Balay } 14544b967eb1SSatish Balay /* scale the diagonal block */ 1455f830108cSBarry Smith ierr = (*a->ops->diagonalscale)(a,ll,rr); CHKERRQ(ierr); 14564b967eb1SSatish Balay 14574b967eb1SSatish Balay if (rr) { 14584b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 145943a90d84SBarry Smith ierr = VecScatterEnd(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx); CHKERRQ(ierr); 1460f830108cSBarry Smith ierr = (*b->ops->diagonalscale)(b,0,aij->lvec); CHKERRQ(ierr); 14614b967eb1SSatish Balay } 14624b967eb1SSatish Balay 14633a40ed3dSBarry Smith PetscFunctionReturn(0); 1464a008b906SSatish Balay } 1465a008b906SSatish Balay 1466a008b906SSatish Balay 1467682d7d0cSBarry Smith extern int MatPrintHelp_SeqAIJ(Mat); 14685615d1e5SSatish Balay #undef __FUNC__ 1469d4bb536fSBarry Smith #define __FUNC__ "MatPrintHelp_MPIAIJ" 14708f6be9afSLois Curfman McInnes int MatPrintHelp_MPIAIJ(Mat A) 1471682d7d0cSBarry Smith { 1472682d7d0cSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*) A->data; 14733a40ed3dSBarry Smith int ierr; 1474682d7d0cSBarry Smith 14753a40ed3dSBarry Smith PetscFunctionBegin; 14763a40ed3dSBarry Smith if (!a->rank) { 14773a40ed3dSBarry Smith ierr = MatPrintHelp_SeqAIJ(a->A);CHKERRQ(ierr); 14783a40ed3dSBarry Smith } 14793a40ed3dSBarry Smith PetscFunctionReturn(0); 1480682d7d0cSBarry Smith } 1481682d7d0cSBarry Smith 14825615d1e5SSatish Balay #undef __FUNC__ 1483d4bb536fSBarry Smith #define __FUNC__ "MatGetBlockSize_MPIAIJ" 14848f6be9afSLois Curfman McInnes int MatGetBlockSize_MPIAIJ(Mat A,int *bs) 14855a838052SSatish Balay { 14863a40ed3dSBarry Smith PetscFunctionBegin; 14875a838052SSatish Balay *bs = 1; 14883a40ed3dSBarry Smith PetscFunctionReturn(0); 14895a838052SSatish Balay } 14905615d1e5SSatish Balay #undef __FUNC__ 1491d4bb536fSBarry Smith #define __FUNC__ "MatSetUnfactored_MPIAIJ" 14928f6be9afSLois Curfman McInnes int MatSetUnfactored_MPIAIJ(Mat A) 1493bb5a7306SBarry Smith { 1494bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*) A->data; 1495bb5a7306SBarry Smith int ierr; 14963a40ed3dSBarry Smith 14973a40ed3dSBarry Smith PetscFunctionBegin; 1498bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A); CHKERRQ(ierr); 14993a40ed3dSBarry Smith PetscFunctionReturn(0); 1500bb5a7306SBarry Smith } 1501bb5a7306SBarry Smith 1502d4bb536fSBarry Smith #undef __FUNC__ 1503d4bb536fSBarry Smith #define __FUNC__ "MatEqual_MPIAIJ" 1504d4bb536fSBarry Smith int MatEqual_MPIAIJ(Mat A, Mat B, PetscTruth *flag) 1505d4bb536fSBarry Smith { 1506d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *) B->data,*matA = (Mat_MPIAIJ *) A->data; 1507d4bb536fSBarry Smith Mat a, b, c, d; 1508d4bb536fSBarry Smith PetscTruth flg; 1509d4bb536fSBarry Smith int ierr; 1510d4bb536fSBarry Smith 15113a40ed3dSBarry Smith PetscFunctionBegin; 1512a8c6a408SBarry Smith if (B->type != MATMPIAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,0,"Matrices must be same type"); 1513d4bb536fSBarry Smith a = matA->A; b = matA->B; 1514d4bb536fSBarry Smith c = matB->A; d = matB->B; 1515d4bb536fSBarry Smith 1516d4bb536fSBarry Smith ierr = MatEqual(a, c, &flg); CHKERRQ(ierr); 1517d4bb536fSBarry Smith if (flg == PETSC_TRUE) { 1518d4bb536fSBarry Smith ierr = MatEqual(b, d, &flg); CHKERRQ(ierr); 1519d4bb536fSBarry Smith } 1520ca161407SBarry Smith ierr = MPI_Allreduce(&flg, flag, 1, MPI_INT, MPI_LAND, A->comm);CHKERRQ(ierr); 15213a40ed3dSBarry Smith PetscFunctionReturn(0); 1522d4bb536fSBarry Smith } 1523d4bb536fSBarry Smith 15248f6be9afSLois Curfman McInnes extern int MatConvertSameType_MPIAIJ(Mat,Mat *,int); 15252f86bd48SSatish Balay extern int MatIncreaseOverlap_MPIAIJ(Mat , int, IS *, int); 15260a198c4cSBarry Smith extern int MatFDColoringCreate_MPIAIJ(Mat,ISColoring,MatFDColoring); 15270a198c4cSBarry Smith extern int MatGetSubMatrices_MPIAIJ (Mat ,int , IS *,IS *,MatGetSubMatrixCall,Mat **); 15286a6a5d1dSBarry Smith extern int MatGetSubMatrix_MPIAIJ (Mat ,IS,IS,int,MatGetSubMatrixCall,Mat *); 152900e6dbe6SBarry Smith 15308a729477SBarry Smith /* -------------------------------------------------------------------*/ 15312ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ, 153239e00950SLois Curfman McInnes MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ, 153344a69424SLois Curfman McInnes MatMult_MPIAIJ,MatMultAdd_MPIAIJ, 153444a69424SLois Curfman McInnes MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ, 153536ce4990SBarry Smith 0,0, 153636ce4990SBarry Smith 0,0, 153736ce4990SBarry Smith 0,0, 153844a69424SLois Curfman McInnes MatRelax_MPIAIJ, 1539b7c46309SBarry Smith MatTranspose_MPIAIJ, 1540d4bb536fSBarry Smith MatGetInfo_MPIAIJ,MatEqual_MPIAIJ, 1541a008b906SSatish Balay MatGetDiagonal_MPIAIJ,MatDiagonalScale_MPIAIJ,MatNorm_MPIAIJ, 1542ee50ffe9SBarry Smith MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ, 15431eb62cbbSBarry Smith 0, 1544299609e3SLois Curfman McInnes MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ, 154536ce4990SBarry Smith 0,0,0,0, 1546d1710a03SLois Curfman McInnes MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ, 154736ce4990SBarry Smith 0,0, 154894a9d846SBarry Smith 0,0,MatConvertSameType_MPIAIJ,0,0, 1549b49de8d1SLois Curfman McInnes 0,0,0, 1550598137ffSSatish Balay MatGetSubMatrices_MPIAIJ,MatIncreaseOverlap_MPIAIJ,MatGetValues_MPIAIJ,0, 1551052efed2SBarry Smith MatPrintHelp_MPIAIJ, 15523b2fbd54SBarry Smith MatScale_MPIAIJ,0,0,0, 15530a198c4cSBarry Smith MatGetBlockSize_MPIAIJ,0,0,0,0, 155400e6dbe6SBarry Smith MatFDColoringCreate_MPIAIJ,0,MatSetUnfactored_MPIAIJ, 1555ca161407SBarry Smith 0,0,MatGetSubMatrix_MPIAIJ}; 155636ce4990SBarry Smith 15578a729477SBarry Smith 15585615d1e5SSatish Balay #undef __FUNC__ 15595615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIAIJ" 15601987afe7SBarry Smith /*@C 1561ff756334SLois Curfman McInnes MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format 15623a511b96SLois Curfman McInnes (the default parallel PETSc format). For good matrix assembly performance 15633a511b96SLois Curfman McInnes the user should preallocate the matrix storage by setting the parameters 15643a511b96SLois Curfman McInnes d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 15653a511b96SLois Curfman McInnes performance can be increased by more than a factor of 50. 15668a729477SBarry Smith 1567db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1568db81eaa0SLois Curfman McInnes 15698a729477SBarry Smith Input Parameters: 1570db81eaa0SLois Curfman McInnes + comm - MPI communicator 15717d3e4905SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 157292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 157392e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 15741a3896d6SBarry Smith . n - This value should be the same as the local size used in creating the 15751a3896d6SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 15761a3896d6SBarry Smith calculated if N is given) For square matrices n is almost always m. 157760d380a7SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 157860d380a7SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1579ab693e5aSLois Curfman McInnes . d_nz - number of nonzeros per row in diagonal portion of local submatrix 1580ff756334SLois Curfman McInnes (same for all local rows) 15812bd5e0b2SLois Curfman McInnes . d_nzz - array containing the number of nonzeros in the various rows of the 158292e8d321SLois Curfman McInnes diagonal portion of the local submatrix (possibly different for each row) 15832bd5e0b2SLois Curfman McInnes or PETSC_NULL. You must leave room for the diagonal entry even if 15842bd5e0b2SLois Curfman McInnes it is zero. 15852bd5e0b2SLois Curfman McInnes . o_nz - number of nonzeros per row in the off-diagonal portion of local 1586ab693e5aSLois Curfman McInnes submatrix (same for all local rows). 1587db81eaa0SLois Curfman McInnes - o_nzz - array containing the number of nonzeros in the various rows of the 15882bd5e0b2SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 15892bd5e0b2SLois Curfman McInnes each row) or PETSC_NULL. 15908a729477SBarry Smith 1591ff756334SLois Curfman McInnes Output Parameter: 159244cd7ae7SLois Curfman McInnes . A - the matrix 15938a729477SBarry Smith 1594b259b22eSLois Curfman McInnes Notes: 1595be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1596be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 1597be79a94dSBarry Smith 1598ff756334SLois Curfman McInnes The AIJ format (also called the Yale sparse matrix format or 1599ff756334SLois Curfman McInnes compressed row storage), is fully compatible with standard Fortran 77 16000002213bSLois Curfman McInnes storage. That is, the stored row and column indices can begin at 16010002213bSLois Curfman McInnes either one (as in Fortran) or zero. See the users manual for details. 1602ff756334SLois Curfman McInnes 1603ff756334SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 1604ff756334SLois Curfman McInnes (possibly both). 1605ff756334SLois Curfman McInnes 16065511cfe3SLois Curfman McInnes By default, this format uses inodes (identical nodes) when possible. 16075511cfe3SLois Curfman McInnes We search for consecutive rows with the same nonzero structure, thereby 16085511cfe3SLois Curfman McInnes reusing matrix information to achieve increased efficiency. 16095511cfe3SLois Curfman McInnes 16105511cfe3SLois Curfman McInnes Options Database Keys: 1611db81eaa0SLois Curfman McInnes + -mat_aij_no_inode - Do not use inodes 1612db81eaa0SLois Curfman McInnes . -mat_aij_inode_limit <limit> - Sets inode limit (max limit=5) 1613db81eaa0SLois Curfman McInnes - -mat_aij_oneindex - Internally use indexing starting at 1 1614db81eaa0SLois Curfman McInnes rather than 0. Note that when calling MatSetValues(), 1615db81eaa0SLois Curfman McInnes the user still MUST index entries starting at 0! 16165511cfe3SLois Curfman McInnes 1617e0245417SLois Curfman McInnes Storage Information: 1618e0245417SLois Curfman McInnes For a square global matrix we define each processor's diagonal portion 1619e0245417SLois Curfman McInnes to be its local rows and the corresponding columns (a square submatrix); 1620e0245417SLois Curfman McInnes each processor's off-diagonal portion encompasses the remainder of the 1621e0245417SLois Curfman McInnes local matrix (a rectangular submatrix). 1622e0245417SLois Curfman McInnes 1623e0245417SLois Curfman McInnes The user can specify preallocated storage for the diagonal part of 16245ace5be8SLois Curfman McInnes the local submatrix with either d_nz or d_nnz (not both). Set 16255ace5be8SLois Curfman McInnes d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 16265ace5be8SLois Curfman McInnes memory allocation. Likewise, specify preallocated storage for the 16275ace5be8SLois Curfman McInnes off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1628ff756334SLois Curfman McInnes 16295511cfe3SLois Curfman McInnes Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 16305511cfe3SLois Curfman McInnes the figure below we depict these three local rows and all columns (0-11). 16312191d07cSBarry Smith 1632db81eaa0SLois Curfman McInnes .vb 1633db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 1634db81eaa0SLois Curfman McInnes ------------------- 1635db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 1636db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 1637db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 1638db81eaa0SLois Curfman McInnes ------------------- 1639db81eaa0SLois Curfman McInnes .ve 1640b810aeb4SBarry Smith 16415511cfe3SLois Curfman McInnes Thus, any entries in the d locations are stored in the d (diagonal) 16425511cfe3SLois Curfman McInnes submatrix, and any entries in the o locations are stored in the 16435511cfe3SLois Curfman McInnes o (off-diagonal) submatrix. Note that the d and the o submatrices are 16445511cfe3SLois Curfman McInnes stored simply in the MATSEQAIJ format for compressed row storage. 16455511cfe3SLois Curfman McInnes 16465511cfe3SLois Curfman McInnes Now d_nz should indicate the number of nonzeros per row in the d matrix, 16475511cfe3SLois Curfman McInnes and o_nz should indicate the number of nonzeros per row in the o matrix. 16485511cfe3SLois Curfman McInnes In general, for PDE problems in which most nonzeros are near the diagonal, 16493d323bbdSBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 165092e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 16516da5968aSLois Curfman McInnes matrices. 16523a511b96SLois Curfman McInnes 1653dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel 1654ff756334SLois Curfman McInnes 1655fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues() 16568a729477SBarry Smith @*/ 1657e1311b90SBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 16588a729477SBarry Smith { 165944cd7ae7SLois Curfman McInnes Mat B; 166044cd7ae7SLois Curfman McInnes Mat_MPIAIJ *b; 166136ce4990SBarry Smith int ierr, i,sum[2],work[2],size; 1662416022c9SBarry Smith 16633a40ed3dSBarry Smith PetscFunctionBegin; 16643914022bSBarry Smith MPI_Comm_size(comm,&size); 16653914022bSBarry Smith if (size == 1) { 16663914022bSBarry Smith if (M == PETSC_DECIDE) M = m; 16673914022bSBarry Smith if (N == PETSC_DECIDE) N = n; 16683914022bSBarry Smith ierr = MatCreateSeqAIJ(comm,M,N,d_nz,d_nnz,A); CHKERRQ(ierr); 16693a40ed3dSBarry Smith PetscFunctionReturn(0); 16703914022bSBarry Smith } 16713914022bSBarry Smith 167244cd7ae7SLois Curfman McInnes *A = 0; 1673f830108cSBarry Smith PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIAIJ,comm,MatDestroy,MatView); 167444cd7ae7SLois Curfman McInnes PLogObjectCreate(B); 167544cd7ae7SLois Curfman McInnes B->data = (void *) (b = PetscNew(Mat_MPIAIJ)); CHKPTRQ(b); 167644cd7ae7SLois Curfman McInnes PetscMemzero(b,sizeof(Mat_MPIAIJ)); 1677f830108cSBarry Smith PetscMemcpy(B->ops,&MatOps,sizeof(struct _MatOps)); 1678e1311b90SBarry Smith B->ops->destroy = MatDestroy_MPIAIJ; 1679e1311b90SBarry Smith B->ops->view = MatView_MPIAIJ; 168044cd7ae7SLois Curfman McInnes B->factor = 0; 168144cd7ae7SLois Curfman McInnes B->assembled = PETSC_FALSE; 168290f02eecSBarry Smith B->mapping = 0; 1683d6dfbf8fSBarry Smith 168447794344SBarry Smith B->insertmode = NOT_SET_VALUES; 16859eb4d147SSatish Balay b->size = size; 168644cd7ae7SLois Curfman McInnes MPI_Comm_rank(comm,&b->rank); 16871eb62cbbSBarry Smith 16883a40ed3dSBarry Smith if (m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) { 1689a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 16903a40ed3dSBarry Smith } 16911987afe7SBarry Smith 1692dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 16931eb62cbbSBarry Smith work[0] = m; work[1] = n; 1694ca161407SBarry Smith ierr = MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );CHKERRQ(ierr); 1695dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE) M = sum[0]; 1696dbd7a890SLois Curfman McInnes if (N == PETSC_DECIDE) N = sum[1]; 16971eb62cbbSBarry Smith } 169844cd7ae7SLois Curfman McInnes if (m == PETSC_DECIDE) {m = M/b->size + ((M % b->size) > b->rank);} 169944cd7ae7SLois Curfman McInnes if (n == PETSC_DECIDE) {n = N/b->size + ((N % b->size) > b->rank);} 170044cd7ae7SLois Curfman McInnes b->m = m; B->m = m; 170144cd7ae7SLois Curfman McInnes b->n = n; B->n = n; 170244cd7ae7SLois Curfman McInnes b->N = N; B->N = N; 170344cd7ae7SLois Curfman McInnes b->M = M; B->M = M; 17041eb62cbbSBarry Smith 17051eb62cbbSBarry Smith /* build local table of row and column ownerships */ 170644cd7ae7SLois Curfman McInnes b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners); 1707f09e8eb9SSatish Balay PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIAIJ)); 1708603f58a4SSatish Balay b->cowners = b->rowners + b->size + 2; 1709ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 171044cd7ae7SLois Curfman McInnes b->rowners[0] = 0; 171144cd7ae7SLois Curfman McInnes for ( i=2; i<=b->size; i++ ) { 171244cd7ae7SLois Curfman McInnes b->rowners[i] += b->rowners[i-1]; 17138a729477SBarry Smith } 171444cd7ae7SLois Curfman McInnes b->rstart = b->rowners[b->rank]; 171544cd7ae7SLois Curfman McInnes b->rend = b->rowners[b->rank+1]; 1716ca161407SBarry Smith ierr = MPI_Allgather(&n,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 171744cd7ae7SLois Curfman McInnes b->cowners[0] = 0; 171844cd7ae7SLois Curfman McInnes for ( i=2; i<=b->size; i++ ) { 171944cd7ae7SLois Curfman McInnes b->cowners[i] += b->cowners[i-1]; 17208a729477SBarry Smith } 172144cd7ae7SLois Curfman McInnes b->cstart = b->cowners[b->rank]; 172244cd7ae7SLois Curfman McInnes b->cend = b->cowners[b->rank+1]; 17238a729477SBarry Smith 17245ace5be8SLois Curfman McInnes if (d_nz == PETSC_DEFAULT) d_nz = 5; 1725029af93fSBarry Smith ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr); 172644cd7ae7SLois Curfman McInnes PLogObjectParent(B,b->A); 17277b8455f0SLois Curfman McInnes if (o_nz == PETSC_DEFAULT) o_nz = 0; 1728029af93fSBarry Smith ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr); 172944cd7ae7SLois Curfman McInnes PLogObjectParent(B,b->B); 17308a729477SBarry Smith 17311eb62cbbSBarry Smith /* build cache for off array entries formed */ 173244cd7ae7SLois Curfman McInnes ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr); 173390f02eecSBarry Smith b->donotstash = 0; 173444cd7ae7SLois Curfman McInnes b->colmap = 0; 173544cd7ae7SLois Curfman McInnes b->garray = 0; 173644cd7ae7SLois Curfman McInnes b->roworiented = 1; 17378a729477SBarry Smith 17381eb62cbbSBarry Smith /* stuff used for matrix vector multiply */ 173944cd7ae7SLois Curfman McInnes b->lvec = 0; 174044cd7ae7SLois Curfman McInnes b->Mvctx = 0; 17418a729477SBarry Smith 17427a0afa10SBarry Smith /* stuff for MatGetRow() */ 174344cd7ae7SLois Curfman McInnes b->rowindices = 0; 174444cd7ae7SLois Curfman McInnes b->rowvalues = 0; 174544cd7ae7SLois Curfman McInnes b->getrowactive = PETSC_FALSE; 17467a0afa10SBarry Smith 174744cd7ae7SLois Curfman McInnes *A = B; 17483a40ed3dSBarry Smith PetscFunctionReturn(0); 1749d6dfbf8fSBarry Smith } 1750c74985f6SBarry Smith 17515615d1e5SSatish Balay #undef __FUNC__ 17525615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIAIJ" 17538f6be9afSLois Curfman McInnes int MatConvertSameType_MPIAIJ(Mat matin,Mat *newmat,int cpvalues) 1754d6dfbf8fSBarry Smith { 1755d6dfbf8fSBarry Smith Mat mat; 1756416022c9SBarry Smith Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data; 1757a1b97e82SLois Curfman McInnes int ierr, len=0, flg; 1758d6dfbf8fSBarry Smith 17593a40ed3dSBarry Smith PetscFunctionBegin; 1760416022c9SBarry Smith *newmat = 0; 1761f830108cSBarry Smith PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIAIJ,matin->comm,MatDestroy,MatView); 1762a5a9c739SBarry Smith PLogObjectCreate(mat); 17630452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a); 1764f830108cSBarry Smith PetscMemcpy(mat->ops,&MatOps,sizeof(struct _MatOps)); 1765e1311b90SBarry Smith mat->ops->destroy = MatDestroy_MPIAIJ; 1766e1311b90SBarry Smith mat->ops->view = MatView_MPIAIJ; 1767d6dfbf8fSBarry Smith mat->factor = matin->factor; 1768c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1769d6dfbf8fSBarry Smith 177044cd7ae7SLois Curfman McInnes a->m = mat->m = oldmat->m; 177144cd7ae7SLois Curfman McInnes a->n = mat->n = oldmat->n; 177244cd7ae7SLois Curfman McInnes a->M = mat->M = oldmat->M; 177344cd7ae7SLois Curfman McInnes a->N = mat->N = oldmat->N; 1774d6dfbf8fSBarry Smith 1775416022c9SBarry Smith a->rstart = oldmat->rstart; 1776416022c9SBarry Smith a->rend = oldmat->rend; 1777416022c9SBarry Smith a->cstart = oldmat->cstart; 1778416022c9SBarry Smith a->cend = oldmat->cend; 177917699dbbSLois Curfman McInnes a->size = oldmat->size; 178017699dbbSLois Curfman McInnes a->rank = oldmat->rank; 178147794344SBarry Smith mat->insertmode = NOT_SET_VALUES; 1782bcd2baecSBarry Smith a->rowvalues = 0; 1783bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 1784d6dfbf8fSBarry Smith 1785603f58a4SSatish Balay a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 1786f09e8eb9SSatish Balay PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIAIJ)); 1787603f58a4SSatish Balay a->cowners = a->rowners + a->size + 2; 1788603f58a4SSatish Balay PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int)); 1789416022c9SBarry Smith ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 17902ee70a88SLois Curfman McInnes if (oldmat->colmap) { 17910452661fSBarry Smith a->colmap = (int *) PetscMalloc((a->N)*sizeof(int));CHKPTRQ(a->colmap); 1792416022c9SBarry Smith PLogObjectMemory(mat,(a->N)*sizeof(int)); 1793416022c9SBarry Smith PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int)); 1794416022c9SBarry Smith } else a->colmap = 0; 17953f41c07dSBarry Smith if (oldmat->garray) { 17963f41c07dSBarry Smith len = ((Mat_SeqAIJ *) (oldmat->B->data))->n; 17973f41c07dSBarry Smith a->garray = (int *) PetscMalloc((len+1)*sizeof(int)); CHKPTRQ(a->garray); 1798464493b3SBarry Smith PLogObjectMemory(mat,len*sizeof(int)); 17993f41c07dSBarry Smith if (len) PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 1800416022c9SBarry Smith } else a->garray = 0; 1801d6dfbf8fSBarry Smith 1802416022c9SBarry Smith ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 1803416022c9SBarry Smith PLogObjectParent(mat,a->lvec); 1804a56f8943SBarry Smith ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 1805416022c9SBarry Smith PLogObjectParent(mat,a->Mvctx); 1806416022c9SBarry Smith ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 1807416022c9SBarry Smith PLogObjectParent(mat,a->A); 1808416022c9SBarry Smith ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 1809416022c9SBarry Smith PLogObjectParent(mat,a->B); 18105dd7a6c7SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 181125cdf11fSBarry Smith if (flg) { 1812682d7d0cSBarry Smith ierr = MatPrintHelp(mat); CHKERRQ(ierr); 1813682d7d0cSBarry Smith } 18148a729477SBarry Smith *newmat = mat; 18153a40ed3dSBarry Smith PetscFunctionReturn(0); 18168a729477SBarry Smith } 1817416022c9SBarry Smith 181877c4ece6SBarry Smith #include "sys.h" 1819416022c9SBarry Smith 18205615d1e5SSatish Balay #undef __FUNC__ 18215615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIAIJ" 182219bcc07fSBarry Smith int MatLoad_MPIAIJ(Viewer viewer,MatType type,Mat *newmat) 1823416022c9SBarry Smith { 1824d65a2f8fSBarry Smith Mat A; 1825d65a2f8fSBarry Smith Scalar *vals,*svals; 182619bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 1827416022c9SBarry Smith MPI_Status status; 18283a40ed3dSBarry Smith int i, nz, ierr, j,rstart, rend, fd; 182917699dbbSLois Curfman McInnes int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 1830d65a2f8fSBarry Smith int *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols; 183119bcc07fSBarry Smith int tag = ((PetscObject)viewer)->tag; 1832416022c9SBarry Smith 18333a40ed3dSBarry Smith PetscFunctionBegin; 183417699dbbSLois Curfman McInnes MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 183517699dbbSLois Curfman McInnes if (!rank) { 183690ace30eSBarry Smith ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 18370752156aSBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT); CHKERRQ(ierr); 1838a8c6a408SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object"); 1839d64ed03dSBarry Smith if (header[3] < 0) { 1840a8c6a408SBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix in special format on disk, cannot load as MPIAIJ"); 1841d64ed03dSBarry Smith } 18426c5fab8fSBarry Smith } 18436c5fab8fSBarry Smith 1844ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 1845416022c9SBarry Smith M = header[1]; N = header[2]; 1846416022c9SBarry Smith /* determine ownership of all rows */ 184717699dbbSLois Curfman McInnes m = M/size + ((M % size) > rank); 18480452661fSBarry Smith rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners); 1849ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 1850416022c9SBarry Smith rowners[0] = 0; 185117699dbbSLois Curfman McInnes for ( i=2; i<=size; i++ ) { 1852416022c9SBarry Smith rowners[i] += rowners[i-1]; 1853416022c9SBarry Smith } 185417699dbbSLois Curfman McInnes rstart = rowners[rank]; 185517699dbbSLois Curfman McInnes rend = rowners[rank+1]; 1856416022c9SBarry Smith 1857416022c9SBarry Smith /* distribute row lengths to all processors */ 18580452661fSBarry Smith ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens); 1859416022c9SBarry Smith offlens = ourlens + (rend-rstart); 186017699dbbSLois Curfman McInnes if (!rank) { 18610452661fSBarry Smith rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths); 18620752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr); 18630452661fSBarry Smith sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 186417699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i]; 1865ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr); 18660452661fSBarry Smith PetscFree(sndcounts); 18673a40ed3dSBarry Smith } else { 1868ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);CHKERRQ(ierr); 1869416022c9SBarry Smith } 1870416022c9SBarry Smith 187117699dbbSLois Curfman McInnes if (!rank) { 1872416022c9SBarry Smith /* calculate the number of nonzeros on each processor */ 18730452661fSBarry Smith procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 1874cddf8d76SBarry Smith PetscMemzero(procsnz,size*sizeof(int)); 187517699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 1876416022c9SBarry Smith for ( j=rowners[i]; j< rowners[i+1]; j++ ) { 1877416022c9SBarry Smith procsnz[i] += rowlengths[j]; 1878416022c9SBarry Smith } 1879416022c9SBarry Smith } 18800452661fSBarry Smith PetscFree(rowlengths); 1881416022c9SBarry Smith 1882416022c9SBarry Smith /* determine max buffer needed and allocate it */ 1883416022c9SBarry Smith maxnz = 0; 188417699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 18850452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 1886416022c9SBarry Smith } 18870452661fSBarry Smith cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 1888416022c9SBarry Smith 1889416022c9SBarry Smith /* read in my part of the matrix column indices */ 1890416022c9SBarry Smith nz = procsnz[0]; 18910452661fSBarry Smith mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 18920752156aSBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT); CHKERRQ(ierr); 1893d65a2f8fSBarry Smith 1894d65a2f8fSBarry Smith /* read in every one elses and ship off */ 189517699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { 1896d65a2f8fSBarry Smith nz = procsnz[i]; 18970752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr); 1898ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 1899d65a2f8fSBarry Smith } 19000452661fSBarry Smith PetscFree(cols); 19013a40ed3dSBarry Smith } else { 1902416022c9SBarry Smith /* determine buffer space needed for message */ 1903416022c9SBarry Smith nz = 0; 1904416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1905416022c9SBarry Smith nz += ourlens[i]; 1906416022c9SBarry Smith } 19070452661fSBarry Smith mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 1908416022c9SBarry Smith 1909416022c9SBarry Smith /* receive message of column indices*/ 1910ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 1911ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 1912a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 1913416022c9SBarry Smith } 1914416022c9SBarry Smith 1915416022c9SBarry Smith /* loop over local rows, determining number of off diagonal entries */ 1916cddf8d76SBarry Smith PetscMemzero(offlens,m*sizeof(int)); 1917416022c9SBarry Smith jj = 0; 1918416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1919416022c9SBarry Smith for ( j=0; j<ourlens[i]; j++ ) { 1920d65a2f8fSBarry Smith if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 1921416022c9SBarry Smith jj++; 1922416022c9SBarry Smith } 1923416022c9SBarry Smith } 1924d65a2f8fSBarry Smith 1925d65a2f8fSBarry Smith /* create our matrix */ 1926416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1927416022c9SBarry Smith ourlens[i] -= offlens[i]; 1928416022c9SBarry Smith } 1929d65a2f8fSBarry Smith ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1930d65a2f8fSBarry Smith A = *newmat; 19316d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 1932d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1933d65a2f8fSBarry Smith ourlens[i] += offlens[i]; 1934d65a2f8fSBarry Smith } 1935416022c9SBarry Smith 193617699dbbSLois Curfman McInnes if (!rank) { 19370452661fSBarry Smith vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals); 1938416022c9SBarry Smith 1939416022c9SBarry Smith /* read in my part of the matrix numerical values */ 1940416022c9SBarry Smith nz = procsnz[0]; 19410752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 1942d65a2f8fSBarry Smith 1943d65a2f8fSBarry Smith /* insert into matrix */ 1944d65a2f8fSBarry Smith jj = rstart; 1945d65a2f8fSBarry Smith smycols = mycols; 1946d65a2f8fSBarry Smith svals = vals; 1947d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1948d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1949d65a2f8fSBarry Smith smycols += ourlens[i]; 1950d65a2f8fSBarry Smith svals += ourlens[i]; 1951d65a2f8fSBarry Smith jj++; 1952416022c9SBarry Smith } 1953416022c9SBarry Smith 1954d65a2f8fSBarry Smith /* read in other processors and ship out */ 195517699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { 1956416022c9SBarry Smith nz = procsnz[i]; 19570752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 1958ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 1959416022c9SBarry Smith } 19600452661fSBarry Smith PetscFree(procsnz); 19613a40ed3dSBarry Smith } else { 1962d65a2f8fSBarry Smith /* receive numeric values */ 19630452661fSBarry Smith vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals); 1964416022c9SBarry Smith 1965d65a2f8fSBarry Smith /* receive message of values*/ 1966ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 1967ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 1968a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 1969d65a2f8fSBarry Smith 1970d65a2f8fSBarry Smith /* insert into matrix */ 1971d65a2f8fSBarry Smith jj = rstart; 1972d65a2f8fSBarry Smith smycols = mycols; 1973d65a2f8fSBarry Smith svals = vals; 1974d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1975d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1976d65a2f8fSBarry Smith smycols += ourlens[i]; 1977d65a2f8fSBarry Smith svals += ourlens[i]; 1978d65a2f8fSBarry Smith jj++; 1979d65a2f8fSBarry Smith } 1980d65a2f8fSBarry Smith } 19810452661fSBarry Smith PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners); 1982d65a2f8fSBarry Smith 19836d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 19846d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 19853a40ed3dSBarry Smith PetscFunctionReturn(0); 1986416022c9SBarry Smith } 1987a0ff6018SBarry Smith 198829da9460SBarry Smith #undef __FUNC__ 198929da9460SBarry Smith #define __FUNC__ "MatGetSubMatrix_MPIAIJ" 1990a0ff6018SBarry Smith /* 199129da9460SBarry Smith Not great since it makes two copies of the submatrix, first an SeqAIJ 199229da9460SBarry Smith in local and then by concatenating the local matrices the end result. 199329da9460SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIAIJ() 1994a0ff6018SBarry Smith */ 19956a6a5d1dSBarry Smith int MatGetSubMatrix_MPIAIJ(Mat mat,IS isrow,IS iscol,int csize,MatGetSubMatrixCall call,Mat *newmat) 1996a0ff6018SBarry Smith { 199700e6dbe6SBarry Smith int ierr, i, m,n,rstart,row,rend,nz,*cwork,size,rank,j; 1998fee21e36SBarry Smith Mat *local,M, Mreuse; 199900e6dbe6SBarry Smith Scalar *vwork,*aa; 200000e6dbe6SBarry Smith MPI_Comm comm = mat->comm; 200100e6dbe6SBarry Smith Mat_SeqAIJ *aij; 200200e6dbe6SBarry Smith int *ii, *jj,nlocal,*dlens,*olens,dlen,olen,jend; 2003a0ff6018SBarry Smith 2004a0ff6018SBarry Smith PetscFunctionBegin; 200500e6dbe6SBarry Smith MPI_Comm_rank(comm,&rank); 200600e6dbe6SBarry Smith MPI_Comm_size(comm,&size); 200700e6dbe6SBarry Smith 2008fee21e36SBarry Smith if (call == MAT_REUSE_MATRIX) { 2009fee21e36SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 2010fee21e36SBarry Smith if (!Mreuse) SETERRQ(1,1,"Submatrix passed in was not used before, cannot reuse"); 2011fee21e36SBarry Smith local = &Mreuse; 2012fee21e36SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 2013fee21e36SBarry Smith } else { 2014a0ff6018SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 2015fee21e36SBarry Smith Mreuse = *local; 2016fee21e36SBarry Smith PetscFree(local); 2017fee21e36SBarry Smith } 2018a0ff6018SBarry Smith 2019a0ff6018SBarry Smith /* 2020a0ff6018SBarry Smith m - number of local rows 2021a0ff6018SBarry Smith n - number of columns (same on all processors) 2022a0ff6018SBarry Smith rstart - first row in new global matrix generated 2023a0ff6018SBarry Smith */ 2024fee21e36SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 2025a0ff6018SBarry Smith if (call == MAT_INITIAL_MATRIX) { 2026fee21e36SBarry Smith aij = (Mat_SeqAIJ *) (Mreuse)->data; 2027a8c6a408SBarry Smith if (aij->indexshift) SETERRQ(PETSC_ERR_SUP,1,"No support for index shifted matrix"); 202800e6dbe6SBarry Smith ii = aij->i; 202900e6dbe6SBarry Smith jj = aij->j; 203000e6dbe6SBarry Smith 2031a0ff6018SBarry Smith /* 203200e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 203300e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 2034a0ff6018SBarry Smith */ 203500e6dbe6SBarry Smith 203600e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 20376a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 203800e6dbe6SBarry Smith nlocal = n/size + ((n % size) > rank); 20396a6a5d1dSBarry Smith } else { 20406a6a5d1dSBarry Smith nlocal = csize; 20416a6a5d1dSBarry Smith } 2042ca161407SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 204300e6dbe6SBarry Smith rstart = rend - nlocal; 20446a6a5d1dSBarry Smith if (rank == size - 1 && rend != n) { 20456a6a5d1dSBarry Smith SETERRQ(1,1,"Local column sizes do not add up to total number of columns"); 20466a6a5d1dSBarry Smith } 204700e6dbe6SBarry Smith 204800e6dbe6SBarry Smith /* next, compute all the lengths */ 204900e6dbe6SBarry Smith dlens = (int *) PetscMalloc( (2*m+1)*sizeof(int) );CHKPTRQ(dlens); 205000e6dbe6SBarry Smith olens = dlens + m; 205100e6dbe6SBarry Smith for ( i=0; i<m; i++ ) { 205200e6dbe6SBarry Smith jend = ii[i+1] - ii[i]; 205300e6dbe6SBarry Smith olen = 0; 205400e6dbe6SBarry Smith dlen = 0; 205500e6dbe6SBarry Smith for ( j=0; j<jend; j++ ) { 205600e6dbe6SBarry Smith if ( *jj < rstart || *jj >= rend) olen++; 205700e6dbe6SBarry Smith else dlen++; 205800e6dbe6SBarry Smith jj++; 205900e6dbe6SBarry Smith } 206000e6dbe6SBarry Smith olens[i] = olen; 206100e6dbe6SBarry Smith dlens[i] = dlen; 206200e6dbe6SBarry Smith } 206300e6dbe6SBarry Smith ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,PETSC_DECIDE,n,0,dlens,0,olens,&M);CHKERRQ(ierr); 206400e6dbe6SBarry Smith PetscFree(dlens); 2065a0ff6018SBarry Smith } else { 2066a0ff6018SBarry Smith int ml,nl; 2067a0ff6018SBarry Smith 2068a0ff6018SBarry Smith M = *newmat; 2069a0ff6018SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 2070a8c6a408SBarry Smith if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,1,"Previous matrix must be same size/layout as request"); 2071a0ff6018SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 2072c48de900SBarry Smith /* 2073c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 2074c48de900SBarry Smith rather than the slower MatSetValues(). 2075c48de900SBarry Smith */ 2076c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 2077c48de900SBarry Smith M->assembled = PETSC_FALSE; 2078a0ff6018SBarry Smith } 2079a0ff6018SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend); CHKERRQ(ierr); 2080fee21e36SBarry Smith aij = (Mat_SeqAIJ *) (Mreuse)->data; 2081a8c6a408SBarry Smith if (aij->indexshift) SETERRQ(PETSC_ERR_SUP,1,"No support for index shifted matrix"); 208200e6dbe6SBarry Smith ii = aij->i; 208300e6dbe6SBarry Smith jj = aij->j; 208400e6dbe6SBarry Smith aa = aij->a; 2085a0ff6018SBarry Smith for (i=0; i<m; i++) { 2086a0ff6018SBarry Smith row = rstart + i; 208700e6dbe6SBarry Smith nz = ii[i+1] - ii[i]; 208800e6dbe6SBarry Smith cwork = jj; jj += nz; 208900e6dbe6SBarry Smith vwork = aa; aa += nz; 20908c638d02SBarry Smith ierr = MatSetValues_MPIAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES); CHKERRQ(ierr); 2091a0ff6018SBarry Smith } 2092a0ff6018SBarry Smith 2093a0ff6018SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 2094a0ff6018SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 2095a0ff6018SBarry Smith *newmat = M; 2096fee21e36SBarry Smith 2097fee21e36SBarry Smith /* save submatrix used in processor for next request */ 2098fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 2099fee21e36SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 2100fee21e36SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 2101fee21e36SBarry Smith } 2102fee21e36SBarry Smith 2103a0ff6018SBarry Smith PetscFunctionReturn(0); 2104a0ff6018SBarry Smith } 2105