1dced61a5SBarry Smith #define PETSC_SKIP_SPINLOCK 253800007SKarl Rupp #define PETSC_SKIP_CXX_COMPLEX_FIX 399acd6aaSStefano Zampini #define PETSC_SKIP_IMMINTRIN_H_CUDAWORKAROUND 1 40fd2b57fSKarl Rupp 53d13b8fdSMatthew G. Knepley #include <petscconf.h> 69ae82921SPaul Mullowney #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 757d48284SJunchao Zhang #include <../src/mat/impls/aij/seq/seqcusparse/cusparsematimpl.h> 83d13b8fdSMatthew G. Knepley #include <../src/mat/impls/aij/mpi/mpicusparse/mpicusparsematimpl.h> 97e8381f9SStefano Zampini #include <thrust/advance.h> 104eb5378fSStefano Zampini #include <petscsf.h> 117e8381f9SStefano Zampini 127e8381f9SStefano Zampini struct VecCUDAEquals 137e8381f9SStefano Zampini { 147e8381f9SStefano Zampini template <typename Tuple> 157e8381f9SStefano Zampini __host__ __device__ 167e8381f9SStefano Zampini void operator()(Tuple t) 177e8381f9SStefano Zampini { 187e8381f9SStefano Zampini thrust::get<1>(t) = thrust::get<0>(t); 197e8381f9SStefano Zampini } 207e8381f9SStefano Zampini }; 217e8381f9SStefano Zampini 227e8381f9SStefano Zampini static PetscErrorCode MatSetValuesCOO_MPIAIJCUSPARSE(Mat A, const PetscScalar v[], InsertMode imode) 237e8381f9SStefano Zampini { 247e8381f9SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 257e8381f9SStefano Zampini Mat_MPIAIJCUSPARSE *cusp = (Mat_MPIAIJCUSPARSE*)a->spptr; 267e8381f9SStefano Zampini PetscInt n = cusp->coo_nd + cusp->coo_no; 277e8381f9SStefano Zampini PetscErrorCode ierr; 287e8381f9SStefano Zampini cudaError_t cerr; 297e8381f9SStefano Zampini 307e8381f9SStefano Zampini PetscFunctionBegin; 317e8381f9SStefano Zampini ierr = PetscLogEventBegin(MAT_CUSPARSESetVCOO,A,0,0,0);CHKERRQ(ierr); 32e61fc153SStefano Zampini if (cusp->coo_p && v) { 3308391a17SStefano Zampini thrust::device_ptr<const PetscScalar> d_v; 3408391a17SStefano Zampini THRUSTARRAY *w = NULL; 3508391a17SStefano Zampini 3608391a17SStefano Zampini if (isCudaMem(v)) { 3708391a17SStefano Zampini d_v = thrust::device_pointer_cast(v); 3808391a17SStefano Zampini } else { 39e61fc153SStefano Zampini w = new THRUSTARRAY(n); 40e61fc153SStefano Zampini w->assign(v,v+n); 4108391a17SStefano Zampini ierr = PetscLogCpuToGpu(n*sizeof(PetscScalar));CHKERRQ(ierr); 4208391a17SStefano Zampini d_v = w->data(); 4308391a17SStefano Zampini } 4408391a17SStefano Zampini 4508391a17SStefano Zampini auto zibit = thrust::make_zip_iterator(thrust::make_tuple(thrust::make_permutation_iterator(d_v,cusp->coo_p->begin()), 467e8381f9SStefano Zampini cusp->coo_pw->begin())); 4708391a17SStefano Zampini auto zieit = thrust::make_zip_iterator(thrust::make_tuple(thrust::make_permutation_iterator(d_v,cusp->coo_p->end()), 487e8381f9SStefano Zampini cusp->coo_pw->end())); 4908391a17SStefano Zampini ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 507e8381f9SStefano Zampini thrust::for_each(zibit,zieit,VecCUDAEquals()); 5108391a17SStefano Zampini cerr = WaitForCUDA();CHKERRCUDA(cerr); 5208391a17SStefano Zampini ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 53e61fc153SStefano Zampini delete w; 547e8381f9SStefano Zampini ierr = MatSetValuesCOO_SeqAIJCUSPARSE(a->A,cusp->coo_pw->data().get(),imode);CHKERRQ(ierr); 557e8381f9SStefano Zampini ierr = MatSetValuesCOO_SeqAIJCUSPARSE(a->B,cusp->coo_pw->data().get()+cusp->coo_nd,imode);CHKERRQ(ierr); 567e8381f9SStefano Zampini } else { 577e8381f9SStefano Zampini ierr = MatSetValuesCOO_SeqAIJCUSPARSE(a->A,v,imode);CHKERRQ(ierr); 587e8381f9SStefano Zampini ierr = MatSetValuesCOO_SeqAIJCUSPARSE(a->B,v ? v+cusp->coo_nd : NULL,imode);CHKERRQ(ierr); 597e8381f9SStefano Zampini } 607e8381f9SStefano Zampini ierr = PetscLogEventEnd(MAT_CUSPARSESetVCOO,A,0,0,0);CHKERRQ(ierr); 617e8381f9SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 627e8381f9SStefano Zampini A->num_ass++; 637e8381f9SStefano Zampini A->assembled = PETSC_TRUE; 647e8381f9SStefano Zampini A->ass_nonzerostate = A->nonzerostate; 654eb5378fSStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 667e8381f9SStefano Zampini PetscFunctionReturn(0); 677e8381f9SStefano Zampini } 687e8381f9SStefano Zampini 697e8381f9SStefano Zampini template <typename Tuple> 707e8381f9SStefano Zampini struct IsNotOffDiagT 717e8381f9SStefano Zampini { 727e8381f9SStefano Zampini PetscInt _cstart,_cend; 737e8381f9SStefano Zampini 747e8381f9SStefano Zampini IsNotOffDiagT(PetscInt cstart, PetscInt cend) : _cstart(cstart), _cend(cend) {} 757e8381f9SStefano Zampini __host__ __device__ 767e8381f9SStefano Zampini inline bool operator()(Tuple t) 777e8381f9SStefano Zampini { 787e8381f9SStefano Zampini return !(thrust::get<1>(t) < _cstart || thrust::get<1>(t) >= _cend); 797e8381f9SStefano Zampini } 807e8381f9SStefano Zampini }; 817e8381f9SStefano Zampini 827e8381f9SStefano Zampini struct IsOffDiag 837e8381f9SStefano Zampini { 847e8381f9SStefano Zampini PetscInt _cstart,_cend; 857e8381f9SStefano Zampini 867e8381f9SStefano Zampini IsOffDiag(PetscInt cstart, PetscInt cend) : _cstart(cstart), _cend(cend) {} 877e8381f9SStefano Zampini __host__ __device__ 887e8381f9SStefano Zampini inline bool operator() (const PetscInt &c) 897e8381f9SStefano Zampini { 907e8381f9SStefano Zampini return c < _cstart || c >= _cend; 917e8381f9SStefano Zampini } 927e8381f9SStefano Zampini }; 937e8381f9SStefano Zampini 947e8381f9SStefano Zampini struct GlobToLoc 957e8381f9SStefano Zampini { 967e8381f9SStefano Zampini PetscInt _start; 977e8381f9SStefano Zampini 987e8381f9SStefano Zampini GlobToLoc(PetscInt start) : _start(start) {} 997e8381f9SStefano Zampini __host__ __device__ 1007e8381f9SStefano Zampini inline PetscInt operator() (const PetscInt &c) 1017e8381f9SStefano Zampini { 1027e8381f9SStefano Zampini return c - _start; 1037e8381f9SStefano Zampini } 1047e8381f9SStefano Zampini }; 1057e8381f9SStefano Zampini 1067e8381f9SStefano Zampini static PetscErrorCode MatSetPreallocationCOO_MPIAIJCUSPARSE(Mat B, PetscInt n, const PetscInt coo_i[], const PetscInt coo_j[]) 1077e8381f9SStefano Zampini { 1087e8381f9SStefano Zampini Mat_MPIAIJ *b = (Mat_MPIAIJ*)B->data; 1097e8381f9SStefano Zampini Mat_MPIAIJCUSPARSE *cusp = (Mat_MPIAIJCUSPARSE*)b->spptr; 1107e8381f9SStefano Zampini PetscErrorCode ierr; 1117e8381f9SStefano Zampini PetscInt *jj; 1127e8381f9SStefano Zampini size_t noff = 0; 1137e8381f9SStefano Zampini THRUSTINTARRAY d_i(n); 1147e8381f9SStefano Zampini THRUSTINTARRAY d_j(n); 1157e8381f9SStefano Zampini ISLocalToGlobalMapping l2g; 1167e8381f9SStefano Zampini cudaError_t cerr; 1177e8381f9SStefano Zampini 1187e8381f9SStefano Zampini PetscFunctionBegin; 1197e8381f9SStefano Zampini ierr = PetscLogEventBegin(MAT_CUSPARSEPreallCOO,B,0,0,0);CHKERRQ(ierr); 1207e8381f9SStefano Zampini ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1217e8381f9SStefano Zampini ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1227e8381f9SStefano Zampini if (b->A) { ierr = MatCUSPARSEClearHandle(b->A);CHKERRQ(ierr); } 1237e8381f9SStefano Zampini if (b->B) { ierr = MatCUSPARSEClearHandle(b->B);CHKERRQ(ierr); } 1247e8381f9SStefano Zampini ierr = PetscFree(b->garray);CHKERRQ(ierr); 1257e8381f9SStefano Zampini ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 1267e8381f9SStefano Zampini ierr = MatDestroy(&b->A);CHKERRQ(ierr); 1277e8381f9SStefano Zampini ierr = MatDestroy(&b->B);CHKERRQ(ierr); 1287e8381f9SStefano Zampini 1297e8381f9SStefano Zampini ierr = PetscLogCpuToGpu(2.*n*sizeof(PetscInt));CHKERRQ(ierr); 1307e8381f9SStefano Zampini d_i.assign(coo_i,coo_i+n); 1317e8381f9SStefano Zampini d_j.assign(coo_j,coo_j+n); 1327e8381f9SStefano Zampini delete cusp->coo_p; 1337e8381f9SStefano Zampini delete cusp->coo_pw; 1347e8381f9SStefano Zampini cusp->coo_p = NULL; 1357e8381f9SStefano Zampini cusp->coo_pw = NULL; 13608391a17SStefano Zampini ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 1377e8381f9SStefano Zampini auto firstoffd = thrust::find_if(thrust::device,d_j.begin(),d_j.end(),IsOffDiag(B->cmap->rstart,B->cmap->rend)); 1387e8381f9SStefano Zampini auto firstdiag = thrust::find_if_not(thrust::device,firstoffd,d_j.end(),IsOffDiag(B->cmap->rstart,B->cmap->rend)); 1397e8381f9SStefano Zampini if (firstoffd != d_j.end() && firstdiag != d_j.end()) { 1407e8381f9SStefano Zampini cusp->coo_p = new THRUSTINTARRAY(n); 1417e8381f9SStefano Zampini cusp->coo_pw = new THRUSTARRAY(n); 1427e8381f9SStefano Zampini thrust::sequence(thrust::device,cusp->coo_p->begin(),cusp->coo_p->end(),0); 1437e8381f9SStefano Zampini auto fzipp = thrust::make_zip_iterator(thrust::make_tuple(d_i.begin(),d_j.begin(),cusp->coo_p->begin())); 1447e8381f9SStefano Zampini auto ezipp = thrust::make_zip_iterator(thrust::make_tuple(d_i.end(),d_j.end(),cusp->coo_p->end())); 1457e8381f9SStefano Zampini auto mzipp = thrust::partition(thrust::device,fzipp,ezipp,IsNotOffDiagT<thrust::tuple<PetscInt,PetscInt,PetscInt> >(B->cmap->rstart,B->cmap->rend)); 1467e8381f9SStefano Zampini firstoffd = mzipp.get_iterator_tuple().get<1>(); 1477e8381f9SStefano Zampini } 1487e8381f9SStefano Zampini cusp->coo_nd = thrust::distance(d_j.begin(),firstoffd); 1497e8381f9SStefano Zampini cusp->coo_no = thrust::distance(firstoffd,d_j.end()); 1507e8381f9SStefano Zampini 1517e8381f9SStefano Zampini /* from global to local */ 1527e8381f9SStefano Zampini thrust::transform(thrust::device,d_i.begin(),d_i.end(),d_i.begin(),GlobToLoc(B->rmap->rstart)); 1537e8381f9SStefano Zampini thrust::transform(thrust::device,d_j.begin(),firstoffd,d_j.begin(),GlobToLoc(B->cmap->rstart)); 15408391a17SStefano Zampini cerr = WaitForCUDA();CHKERRCUDA(cerr); 15508391a17SStefano Zampini ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 1567e8381f9SStefano Zampini 1577e8381f9SStefano Zampini /* copy offdiag column indices to map on the CPU */ 1587e8381f9SStefano Zampini ierr = PetscMalloc1(cusp->coo_no,&jj);CHKERRQ(ierr); 1597e8381f9SStefano Zampini cerr = cudaMemcpy(jj,d_j.data().get()+cusp->coo_nd,cusp->coo_no*sizeof(PetscInt),cudaMemcpyDeviceToHost);CHKERRCUDA(cerr); 1607e8381f9SStefano Zampini auto o_j = d_j.begin(); 16108391a17SStefano Zampini ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 1627e8381f9SStefano Zampini thrust::advance(o_j,cusp->coo_nd); 1637e8381f9SStefano Zampini thrust::sort(thrust::device,o_j,d_j.end()); 1647e8381f9SStefano Zampini auto wit = thrust::unique(thrust::device,o_j,d_j.end()); 16508391a17SStefano Zampini cerr = WaitForCUDA();CHKERRCUDA(cerr); 16608391a17SStefano Zampini ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 1677e8381f9SStefano Zampini noff = thrust::distance(o_j,wit); 1687e8381f9SStefano Zampini ierr = PetscMalloc1(noff+1,&b->garray);CHKERRQ(ierr); 1697e8381f9SStefano Zampini cerr = cudaMemcpy(b->garray,d_j.data().get()+cusp->coo_nd,noff*sizeof(PetscInt),cudaMemcpyDeviceToHost);CHKERRCUDA(cerr); 1707e8381f9SStefano Zampini ierr = PetscLogGpuToCpu((noff+cusp->coo_no)*sizeof(PetscInt));CHKERRQ(ierr); 1717e8381f9SStefano Zampini ierr = ISLocalToGlobalMappingCreate(PETSC_COMM_SELF,1,noff,b->garray,PETSC_COPY_VALUES,&l2g);CHKERRQ(ierr); 1727e8381f9SStefano Zampini ierr = ISLocalToGlobalMappingSetType(l2g,ISLOCALTOGLOBALMAPPINGHASH);CHKERRQ(ierr); 1737e8381f9SStefano Zampini ierr = ISGlobalToLocalMappingApply(l2g,IS_GTOLM_DROP,cusp->coo_no,jj,&n,jj);CHKERRQ(ierr); 1747e8381f9SStefano Zampini if (n != cusp->coo_no) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unexpected is size %D != %D coo size",n,cusp->coo_no); 1757e8381f9SStefano Zampini ierr = ISLocalToGlobalMappingDestroy(&l2g);CHKERRQ(ierr); 1767e8381f9SStefano Zampini 1777e8381f9SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1787e8381f9SStefano Zampini ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 1797e8381f9SStefano Zampini ierr = MatSetType(b->A,MATSEQAIJCUSPARSE);CHKERRQ(ierr); 1807e8381f9SStefano Zampini ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1817e8381f9SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1827e8381f9SStefano Zampini ierr = MatSetSizes(b->B,B->rmap->n,noff,B->rmap->n,noff);CHKERRQ(ierr); 1837e8381f9SStefano Zampini ierr = MatSetType(b->B,MATSEQAIJCUSPARSE);CHKERRQ(ierr); 1847e8381f9SStefano Zampini ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1857e8381f9SStefano Zampini 1867e8381f9SStefano Zampini /* GPU memory, cusparse specific call handles it internally */ 1877e8381f9SStefano Zampini ierr = MatSetPreallocationCOO_SeqAIJCUSPARSE(b->A,cusp->coo_nd,d_i.data().get(),d_j.data().get());CHKERRQ(ierr); 1887e8381f9SStefano Zampini ierr = MatSetPreallocationCOO_SeqAIJCUSPARSE(b->B,cusp->coo_no,d_i.data().get()+cusp->coo_nd,jj);CHKERRQ(ierr); 1897e8381f9SStefano Zampini ierr = PetscFree(jj);CHKERRQ(ierr); 1907e8381f9SStefano Zampini 1917e8381f9SStefano Zampini ierr = MatCUSPARSESetFormat(b->A,MAT_CUSPARSE_MULT,cusp->diagGPUMatFormat);CHKERRQ(ierr); 1927e8381f9SStefano Zampini ierr = MatCUSPARSESetFormat(b->B,MAT_CUSPARSE_MULT,cusp->offdiagGPUMatFormat);CHKERRQ(ierr); 1937e8381f9SStefano Zampini ierr = MatCUSPARSESetHandle(b->A,cusp->handle);CHKERRQ(ierr); 1947e8381f9SStefano Zampini ierr = MatCUSPARSESetHandle(b->B,cusp->handle);CHKERRQ(ierr); 1957e8381f9SStefano Zampini ierr = MatCUSPARSESetStream(b->A,cusp->stream);CHKERRQ(ierr); 1967e8381f9SStefano Zampini ierr = MatCUSPARSESetStream(b->B,cusp->stream);CHKERRQ(ierr); 1977e8381f9SStefano Zampini ierr = MatSetUpMultiply_MPIAIJ(B);CHKERRQ(ierr); 1987e8381f9SStefano Zampini B->preallocated = PETSC_TRUE; 1997e8381f9SStefano Zampini B->nonzerostate++; 2007e8381f9SStefano Zampini ierr = PetscLogEventEnd(MAT_CUSPARSEPreallCOO,B,0,0,0);CHKERRQ(ierr); 2017e8381f9SStefano Zampini 2027e8381f9SStefano Zampini ierr = MatBindToCPU(b->A,B->boundtocpu);CHKERRQ(ierr); 2037e8381f9SStefano Zampini ierr = MatBindToCPU(b->B,B->boundtocpu);CHKERRQ(ierr); 2047e8381f9SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 2057e8381f9SStefano Zampini B->assembled = PETSC_FALSE; 2067e8381f9SStefano Zampini B->was_assembled = PETSC_FALSE; 2077e8381f9SStefano Zampini PetscFunctionReturn(0); 2087e8381f9SStefano Zampini } 2099ae82921SPaul Mullowney 210ed502f03SStefano Zampini static PetscErrorCode MatMPIAIJGetLocalMatMerge_MPIAIJCUSPARSE(Mat A,MatReuse scall,IS *glob,Mat *A_loc) 211ed502f03SStefano Zampini { 212ed502f03SStefano Zampini Mat Ad,Ao; 213ed502f03SStefano Zampini const PetscInt *cmap; 214ed502f03SStefano Zampini PetscErrorCode ierr; 215ed502f03SStefano Zampini 216ed502f03SStefano Zampini PetscFunctionBegin; 217ed502f03SStefano Zampini ierr = MatMPIAIJGetSeqAIJ(A,&Ad,&Ao,&cmap);CHKERRQ(ierr); 218ed502f03SStefano Zampini ierr = MatSeqAIJCUSPARSEMergeMats(Ad,Ao,scall,A_loc);CHKERRQ(ierr); 219ed502f03SStefano Zampini if (glob) { 220ed502f03SStefano Zampini PetscInt cst, i, dn, on, *gidx; 221ed502f03SStefano Zampini 222ed502f03SStefano Zampini ierr = MatGetLocalSize(Ad,NULL,&dn);CHKERRQ(ierr); 223ed502f03SStefano Zampini ierr = MatGetLocalSize(Ao,NULL,&on);CHKERRQ(ierr); 224ed502f03SStefano Zampini ierr = MatGetOwnershipRangeColumn(A,&cst,NULL);CHKERRQ(ierr); 225ed502f03SStefano Zampini ierr = PetscMalloc1(dn+on,&gidx);CHKERRQ(ierr); 226ed502f03SStefano Zampini for (i=0; i<dn; i++) gidx[i] = cst + i; 227ed502f03SStefano Zampini for (i=0; i<on; i++) gidx[i+dn] = cmap[i]; 228ed502f03SStefano Zampini ierr = ISCreateGeneral(PetscObjectComm((PetscObject)Ad),dn+on,gidx,PETSC_OWN_POINTER,glob);CHKERRQ(ierr); 229ed502f03SStefano Zampini } 230ed502f03SStefano Zampini PetscFunctionReturn(0); 231ed502f03SStefano Zampini } 232ed502f03SStefano Zampini 2339ae82921SPaul Mullowney PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJCUSPARSE(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2349ae82921SPaul Mullowney { 235bbf3fe20SPaul Mullowney Mat_MPIAIJ *b = (Mat_MPIAIJ*)B->data; 236bbf3fe20SPaul Mullowney Mat_MPIAIJCUSPARSE *cusparseStruct = (Mat_MPIAIJCUSPARSE*)b->spptr; 2379ae82921SPaul Mullowney PetscErrorCode ierr; 2389ae82921SPaul Mullowney PetscInt i; 2399ae82921SPaul Mullowney 2409ae82921SPaul Mullowney PetscFunctionBegin; 2419ae82921SPaul Mullowney ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2429ae82921SPaul Mullowney ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2437e8381f9SStefano Zampini if (PetscDefined(USE_DEBUG) && d_nnz) { 2449ae82921SPaul Mullowney for (i=0; i<B->rmap->n; i++) { 2459ae82921SPaul Mullowney if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than 0: local row %D value %D",i,d_nnz[i]); 2469ae82921SPaul Mullowney } 2479ae82921SPaul Mullowney } 2487e8381f9SStefano Zampini if (PetscDefined(USE_DEBUG) && o_nnz) { 2499ae82921SPaul Mullowney for (i=0; i<B->rmap->n; i++) { 2509ae82921SPaul Mullowney if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than 0: local row %D value %D",i,o_nnz[i]); 2519ae82921SPaul Mullowney } 2529ae82921SPaul Mullowney } 253*6a29ce69SStefano Zampini #if defined(PETSC_USE_CTABLE) 254*6a29ce69SStefano Zampini ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 255*6a29ce69SStefano Zampini #else 256*6a29ce69SStefano Zampini ierr = PetscFree(b->colmap);CHKERRQ(ierr); 257*6a29ce69SStefano Zampini #endif 258*6a29ce69SStefano Zampini ierr = PetscFree(b->garray);CHKERRQ(ierr); 259*6a29ce69SStefano Zampini ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 260*6a29ce69SStefano Zampini ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 261*6a29ce69SStefano Zampini /* Because the B will have been resized we simply destroy it and create a new one each time */ 262*6a29ce69SStefano Zampini ierr = MatDestroy(&b->B);CHKERRQ(ierr); 263*6a29ce69SStefano Zampini if (!b->A) { 2649ae82921SPaul Mullowney ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2659ae82921SPaul Mullowney ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 2663bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 267*6a29ce69SStefano Zampini } 268*6a29ce69SStefano Zampini if (!b->B) { 269*6a29ce69SStefano Zampini PetscMPIInt size; 270*6a29ce69SStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 2719ae82921SPaul Mullowney ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 272*6a29ce69SStefano Zampini ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr); 2733bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2749ae82921SPaul Mullowney } 275d98d7c49SStefano Zampini ierr = MatSetType(b->A,MATSEQAIJCUSPARSE);CHKERRQ(ierr); 276d98d7c49SStefano Zampini ierr = MatSetType(b->B,MATSEQAIJCUSPARSE);CHKERRQ(ierr); 277*6a29ce69SStefano Zampini ierr = MatBindToCPU(b->A,B->boundtocpu);CHKERRQ(ierr); 278*6a29ce69SStefano Zampini ierr = MatBindToCPU(b->B,B->boundtocpu);CHKERRQ(ierr); 2799ae82921SPaul Mullowney ierr = MatSeqAIJSetPreallocation(b->A,d_nz,d_nnz);CHKERRQ(ierr); 2809ae82921SPaul Mullowney ierr = MatSeqAIJSetPreallocation(b->B,o_nz,o_nnz);CHKERRQ(ierr); 281e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(b->A,MAT_CUSPARSE_MULT,cusparseStruct->diagGPUMatFormat);CHKERRQ(ierr); 282e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(b->B,MAT_CUSPARSE_MULT,cusparseStruct->offdiagGPUMatFormat);CHKERRQ(ierr); 283b06137fdSPaul Mullowney ierr = MatCUSPARSESetHandle(b->A,cusparseStruct->handle);CHKERRQ(ierr); 284b06137fdSPaul Mullowney ierr = MatCUSPARSESetHandle(b->B,cusparseStruct->handle);CHKERRQ(ierr); 285b06137fdSPaul Mullowney ierr = MatCUSPARSESetStream(b->A,cusparseStruct->stream);CHKERRQ(ierr); 286b06137fdSPaul Mullowney ierr = MatCUSPARSESetStream(b->B,cusparseStruct->stream);CHKERRQ(ierr); 2872205254eSKarl Rupp 2889ae82921SPaul Mullowney B->preallocated = PETSC_TRUE; 2899ae82921SPaul Mullowney PetscFunctionReturn(0); 2909ae82921SPaul Mullowney } 291e057df02SPaul Mullowney 2924eb5378fSStefano Zampini typedef struct { 2934eb5378fSStefano Zampini Mat *mp; /* intermediate products */ 2944eb5378fSStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 2954eb5378fSStefano Zampini PetscInt cp; /* number of intermediate products */ 2964eb5378fSStefano Zampini 2974eb5378fSStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 2984eb5378fSStefano Zampini PetscInt *startsj_s,*startsj_r; 2994eb5378fSStefano Zampini PetscScalar *bufa; 3004eb5378fSStefano Zampini Mat P_oth; 3014eb5378fSStefano Zampini 3024eb5378fSStefano Zampini /* may take advantage of merging product->B */ 3034eb5378fSStefano Zampini Mat Bloc; 3044eb5378fSStefano Zampini 3054eb5378fSStefano Zampini /* cusparse does not have support to split between symbolic and numeric phases 3064eb5378fSStefano Zampini When api_user is true, we don't need to update the numerical values 3074eb5378fSStefano Zampini of the temporary storage */ 3084eb5378fSStefano Zampini PetscBool reusesym; 3094eb5378fSStefano Zampini 3104eb5378fSStefano Zampini /* support for COO values insertion */ 3114eb5378fSStefano Zampini PetscScalar *coo_v,*coo_w; 3124eb5378fSStefano Zampini PetscSF sf; /* if present, non-local values insertion (i.e. AtB or PtAP) */ 3134eb5378fSStefano Zampini } MatMatMPIAIJCUSPARSE; 3144eb5378fSStefano Zampini 3154eb5378fSStefano Zampini PetscErrorCode MatDestroy_MatMatMPIAIJCUSPARSE(void *data) 3164eb5378fSStefano Zampini { 3174eb5378fSStefano Zampini MatMatMPIAIJCUSPARSE *mmdata = (MatMatMPIAIJCUSPARSE*)data; 3184eb5378fSStefano Zampini PetscInt i; 3194eb5378fSStefano Zampini PetscErrorCode ierr; 3204eb5378fSStefano Zampini 3214eb5378fSStefano Zampini PetscFunctionBegin; 3224eb5378fSStefano Zampini ierr = PetscFree2(mmdata->startsj_s,mmdata->startsj_r);CHKERRQ(ierr); 3234eb5378fSStefano Zampini ierr = PetscFree(mmdata->bufa);CHKERRQ(ierr); 3244eb5378fSStefano Zampini ierr = PetscFree(mmdata->coo_v);CHKERRQ(ierr); 3254eb5378fSStefano Zampini ierr = PetscFree(mmdata->coo_w);CHKERRQ(ierr); 3264eb5378fSStefano Zampini ierr = MatDestroy(&mmdata->P_oth);CHKERRQ(ierr); 3274eb5378fSStefano Zampini ierr = MatDestroy(&mmdata->Bloc);CHKERRQ(ierr); 3284eb5378fSStefano Zampini ierr = PetscSFDestroy(&mmdata->sf);CHKERRQ(ierr); 3294eb5378fSStefano Zampini for (i = 0; i < mmdata->cp; i++) { 3304eb5378fSStefano Zampini ierr = MatDestroy(&mmdata->mp[i]);CHKERRQ(ierr); 3314eb5378fSStefano Zampini } 3324eb5378fSStefano Zampini ierr = PetscFree(mmdata->mp);CHKERRQ(ierr); 3334eb5378fSStefano Zampini ierr = PetscFree(mmdata->mptmp);CHKERRQ(ierr); 3344eb5378fSStefano Zampini ierr = PetscFree(mmdata);CHKERRQ(ierr); 3354eb5378fSStefano Zampini PetscFunctionReturn(0); 3364eb5378fSStefano Zampini } 3374eb5378fSStefano Zampini 3384eb5378fSStefano Zampini static PetscErrorCode MatProductNumeric_MPIAIJCUSPARSE_MPIAIJCUSPARSE(Mat C) 3394eb5378fSStefano Zampini { 3404eb5378fSStefano Zampini MatMatMPIAIJCUSPARSE *mmdata; 3414eb5378fSStefano Zampini PetscScalar *tmp; 3424eb5378fSStefano Zampini PetscInt i,n; 3434eb5378fSStefano Zampini PetscErrorCode ierr; 3444eb5378fSStefano Zampini 3454eb5378fSStefano Zampini PetscFunctionBegin; 3464eb5378fSStefano Zampini MatCheckProduct(C,1); 3474eb5378fSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 3484eb5378fSStefano Zampini mmdata = (MatMatMPIAIJCUSPARSE*)C->product->data; 3494eb5378fSStefano Zampini tmp = mmdata->sf ? mmdata->coo_w : mmdata->coo_v; 3504eb5378fSStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 3514eb5378fSStefano Zampini if (mmdata->P_oth) { 3524eb5378fSStefano Zampini ierr = MatGetBrowsOfAoCols_MPIAIJ(C->product->A,C->product->B,MAT_REUSE_MATRIX,&mmdata->startsj_s,&mmdata->startsj_r,&mmdata->bufa,&mmdata->P_oth);CHKERRQ(ierr); 3534eb5378fSStefano Zampini } 3544eb5378fSStefano Zampini if (mmdata->Bloc) { 3554eb5378fSStefano Zampini ierr = MatMPIAIJGetLocalMatMerge(C->product->B,MAT_REUSE_MATRIX,NULL,&mmdata->Bloc);CHKERRQ(ierr); 3564eb5378fSStefano Zampini } 3574eb5378fSStefano Zampini } 3584eb5378fSStefano Zampini mmdata->reusesym = PETSC_FALSE; 3594eb5378fSStefano Zampini for (i = 0, n = 0; i < mmdata->cp; i++) { 3604eb5378fSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ*)mmdata->mp[i]->data; 3614eb5378fSStefano Zampini const PetscScalar *vv; 3624eb5378fSStefano Zampini 3634eb5378fSStefano Zampini if (!mmdata->mp[i]->ops->productnumeric) SETERRQ1(PetscObjectComm((PetscObject)mmdata->mp[i]),PETSC_ERR_PLIB,"Missing numeric op for %s",MatProductTypes[mmdata->mp[i]->product->type]); 3644eb5378fSStefano Zampini ierr = (*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]);CHKERRQ(ierr); 3654eb5378fSStefano Zampini if (mmdata->mptmp[i]) continue; 3664eb5378fSStefano Zampini /* TODO: add support for using GPU data directly */ 3674eb5378fSStefano Zampini ierr = MatSeqAIJGetArrayRead(mmdata->mp[i],&vv);CHKERRQ(ierr); 3684eb5378fSStefano Zampini ierr = PetscArraycpy(tmp + n,vv,mm->nz);CHKERRQ(ierr); 3694eb5378fSStefano Zampini ierr = MatSeqAIJRestoreArrayRead(mmdata->mp[i],&vv);CHKERRQ(ierr); 3704eb5378fSStefano Zampini n += mm->nz; 3714eb5378fSStefano Zampini } 3724eb5378fSStefano Zampini if (mmdata->sf) { /* offprocess insertion */ 3734eb5378fSStefano Zampini ierr = PetscSFGatherBegin(mmdata->sf,MPIU_SCALAR,tmp,mmdata->coo_v);CHKERRQ(ierr); 3744eb5378fSStefano Zampini ierr = PetscSFGatherEnd(mmdata->sf,MPIU_SCALAR,tmp,mmdata->coo_v);CHKERRQ(ierr); 3754eb5378fSStefano Zampini } 3764eb5378fSStefano Zampini ierr = MatSetValuesCOO(C,mmdata->coo_v,INSERT_VALUES);CHKERRQ(ierr); 3774eb5378fSStefano Zampini PetscFunctionReturn(0); 3784eb5378fSStefano Zampini } 3794eb5378fSStefano Zampini 3804eb5378fSStefano Zampini /* Pt * A or A * P */ 3814eb5378fSStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 3824eb5378fSStefano Zampini static PetscErrorCode MatProductSymbolic_MPIAIJCUSPARSE_MPIAIJCUSPARSE(Mat C) 3834eb5378fSStefano Zampini { 3844eb5378fSStefano Zampini Mat_Product *product = C->product; 3854eb5378fSStefano Zampini Mat A,P,mp[MAX_NUMBER_INTERMEDIATE]; 3864eb5378fSStefano Zampini Mat_MPIAIJ *a,*p; 3874eb5378fSStefano Zampini MatMatMPIAIJCUSPARSE *mmdata; 3884eb5378fSStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 3894eb5378fSStefano Zampini IS glob = NULL; 3904eb5378fSStefano Zampini const PetscInt *globidx,*P_oth_idx; 3914eb5378fSStefano Zampini const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE],*rmapa[MAX_NUMBER_INTERMEDIATE]; 3924eb5378fSStefano Zampini PetscInt cp = 0,m,n,M,N,ncoo,*coo_i,*coo_j,cmapt[MAX_NUMBER_INTERMEDIATE],rmapt[MAX_NUMBER_INTERMEDIATE],i,j; 3934eb5378fSStefano Zampini MatProductType ptype; 3944eb5378fSStefano Zampini PetscBool mptmp[MAX_NUMBER_INTERMEDIATE],hasoffproc = PETSC_FALSE; 3954eb5378fSStefano Zampini PetscMPIInt size; 3964eb5378fSStefano Zampini PetscErrorCode ierr; 3974eb5378fSStefano Zampini 3984eb5378fSStefano Zampini PetscFunctionBegin; 3994eb5378fSStefano Zampini MatCheckProduct(C,1); 4004eb5378fSStefano Zampini if (product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 4014eb5378fSStefano Zampini ptype = product->type; 4024eb5378fSStefano Zampini if (product->A->symmetric && ptype == MATPRODUCT_AtB) ptype = MATPRODUCT_AB; 4034eb5378fSStefano Zampini switch (ptype) { 4044eb5378fSStefano Zampini case MATPRODUCT_AB: 4054eb5378fSStefano Zampini A = product->A; 4064eb5378fSStefano Zampini P = product->B; 4074eb5378fSStefano Zampini m = A->rmap->n; 4084eb5378fSStefano Zampini n = P->cmap->n; 4094eb5378fSStefano Zampini M = A->rmap->N; 4104eb5378fSStefano Zampini N = P->cmap->N; 4114eb5378fSStefano Zampini break; 4124eb5378fSStefano Zampini case MATPRODUCT_AtB: 4134eb5378fSStefano Zampini P = product->A; 4144eb5378fSStefano Zampini A = product->B; 4154eb5378fSStefano Zampini m = P->cmap->n; 4164eb5378fSStefano Zampini n = A->cmap->n; 4174eb5378fSStefano Zampini M = P->cmap->N; 4184eb5378fSStefano Zampini N = A->cmap->N; 4194eb5378fSStefano Zampini hasoffproc = PETSC_TRUE; 4204eb5378fSStefano Zampini break; 4214eb5378fSStefano Zampini case MATPRODUCT_PtAP: 4224eb5378fSStefano Zampini A = product->A; 4234eb5378fSStefano Zampini P = product->B; 4244eb5378fSStefano Zampini m = P->cmap->n; 4254eb5378fSStefano Zampini n = P->cmap->n; 4264eb5378fSStefano Zampini M = P->cmap->N; 4274eb5378fSStefano Zampini N = P->cmap->N; 4284eb5378fSStefano Zampini hasoffproc = PETSC_TRUE; 4294eb5378fSStefano Zampini break; 4304eb5378fSStefano Zampini default: 4314eb5378fSStefano Zampini SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Not for product type %s",MatProductTypes[ptype]); 4324eb5378fSStefano Zampini } 4334eb5378fSStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)C),&size);CHKERRQ(ierr); 4344eb5378fSStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 4354eb5378fSStefano Zampini 4364eb5378fSStefano Zampini for (i=0;i<MAX_NUMBER_INTERMEDIATE;i++) { 4374eb5378fSStefano Zampini mp[i] = NULL; 4384eb5378fSStefano Zampini mptmp[i] = PETSC_FALSE; 4394eb5378fSStefano Zampini rmapt[i] = 0; 4404eb5378fSStefano Zampini cmapt[i] = 0; 4414eb5378fSStefano Zampini rmapa[i] = NULL; 4424eb5378fSStefano Zampini cmapa[i] = NULL; 4434eb5378fSStefano Zampini } 4444eb5378fSStefano Zampini 4454eb5378fSStefano Zampini a = (Mat_MPIAIJ*)A->data; 4464eb5378fSStefano Zampini p = (Mat_MPIAIJ*)P->data; 4474eb5378fSStefano Zampini ierr = MatSetSizes(C,m,n,M,N);CHKERRQ(ierr); 4484eb5378fSStefano Zampini ierr = PetscLayoutSetUp(C->rmap);CHKERRQ(ierr); 4494eb5378fSStefano Zampini ierr = PetscLayoutSetUp(C->cmap);CHKERRQ(ierr); 4504eb5378fSStefano Zampini ierr = MatSetType(C,MATMPIAIJCUSPARSE);CHKERRQ(ierr); 4514eb5378fSStefano Zampini ierr = PetscNew(&mmdata);CHKERRQ(ierr); 4524eb5378fSStefano Zampini mmdata->reusesym = product->api_user; 4534eb5378fSStefano Zampini switch (ptype) { 4544eb5378fSStefano Zampini case MATPRODUCT_AB: /* A * P */ 4554eb5378fSStefano Zampini ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&mmdata->startsj_s,&mmdata->startsj_r,&mmdata->bufa,&mmdata->P_oth);CHKERRQ(ierr); 4564eb5378fSStefano Zampini 4574eb5378fSStefano Zampini if (1) { /* A_diag * P_loc and A_off * P_oth TODO: add customization for this */ 4584eb5378fSStefano Zampini /* P is product->B */ 4594eb5378fSStefano Zampini ierr = MatMPIAIJGetLocalMatMerge(P,MAT_INITIAL_MATRIX,&glob,&mmdata->Bloc);CHKERRQ(ierr); 4604eb5378fSStefano Zampini ierr = MatProductCreate(a->A,mmdata->Bloc,NULL,&mp[cp]);CHKERRQ(ierr); 4614eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AB);CHKERRQ(ierr); 4624eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 4634eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 4644eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 4654eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 4664eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 4674eb5378fSStefano Zampini ierr = ISGetIndices(glob,&globidx);CHKERRQ(ierr); 4684eb5378fSStefano Zampini rmapt[cp] = 1; 4694eb5378fSStefano Zampini cmapt[cp] = 2; 4704eb5378fSStefano Zampini cmapa[cp] = globidx; 4714eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 4724eb5378fSStefano Zampini cp++; 4734eb5378fSStefano Zampini } else { /* A_diag * P_diag and A_diag * P_off and A_off * P_oth */ 4744eb5378fSStefano Zampini ierr = MatProductCreate(a->A,p->A,NULL,&mp[cp]);CHKERRQ(ierr); 4754eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AB);CHKERRQ(ierr); 4764eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 4774eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 4784eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 4794eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 4804eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 4814eb5378fSStefano Zampini rmapt[cp] = 1; 4824eb5378fSStefano Zampini cmapt[cp] = 1; 4834eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 4844eb5378fSStefano Zampini cp++; 4854eb5378fSStefano Zampini ierr = MatProductCreate(a->A,p->B,NULL,&mp[cp]);CHKERRQ(ierr); 4864eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AB);CHKERRQ(ierr); 4874eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 4884eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 4894eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 4904eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 4914eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 4924eb5378fSStefano Zampini rmapt[cp] = 1; 4934eb5378fSStefano Zampini cmapt[cp] = 2; 4944eb5378fSStefano Zampini cmapa[cp] = p->garray; 4954eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 4964eb5378fSStefano Zampini cp++; 4974eb5378fSStefano Zampini } 4984eb5378fSStefano Zampini if (mmdata->P_oth) { 4994eb5378fSStefano Zampini ierr = MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth,&P_oth_l2g);CHKERRQ(ierr); 5004eb5378fSStefano Zampini ierr = ISLocalToGlobalMappingGetIndices(P_oth_l2g,&P_oth_idx);CHKERRQ(ierr); 5014eb5378fSStefano Zampini ierr = MatSetType(mmdata->P_oth,((PetscObject)(a->B))->type_name);CHKERRQ(ierr); 5024eb5378fSStefano Zampini ierr = MatProductCreate(a->B,mmdata->P_oth,NULL,&mp[cp]);CHKERRQ(ierr); 5034eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AB);CHKERRQ(ierr); 5044eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 5054eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 5064eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 5074eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 5084eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 5094eb5378fSStefano Zampini rmapt[cp] = 1; 5104eb5378fSStefano Zampini cmapt[cp] = 2; 5114eb5378fSStefano Zampini cmapa[cp] = P_oth_idx; 5124eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 5134eb5378fSStefano Zampini cp++; 5144eb5378fSStefano Zampini } 5154eb5378fSStefano Zampini break; 5164eb5378fSStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 5174eb5378fSStefano Zampini /* A is product->B */ 5184eb5378fSStefano Zampini ierr = MatMPIAIJGetLocalMatMerge(A,MAT_INITIAL_MATRIX,&glob,&mmdata->Bloc);CHKERRQ(ierr); 5194eb5378fSStefano Zampini ierr = MatProductCreate(p->A,mmdata->Bloc,NULL,&mp[cp]);CHKERRQ(ierr); 5204eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AtB);CHKERRQ(ierr); 5214eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 5224eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 5234eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 5244eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 5254eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 5264eb5378fSStefano Zampini ierr = ISGetIndices(glob,&globidx);CHKERRQ(ierr); 5274eb5378fSStefano Zampini rmapt[cp] = 1; 5284eb5378fSStefano Zampini cmapt[cp] = 2; 5294eb5378fSStefano Zampini cmapa[cp] = globidx; 5304eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 5314eb5378fSStefano Zampini cp++; 5324eb5378fSStefano Zampini ierr = MatProductCreate(p->B,mmdata->Bloc,NULL,&mp[cp]);CHKERRQ(ierr); 5334eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AtB);CHKERRQ(ierr); 5344eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 5354eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 5364eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 5374eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 5384eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 5394eb5378fSStefano Zampini rmapt[cp] = 2; 5404eb5378fSStefano Zampini rmapa[cp] = p->garray; 5414eb5378fSStefano Zampini cmapt[cp] = 2; 5424eb5378fSStefano Zampini cmapa[cp] = globidx; 5434eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 5444eb5378fSStefano Zampini cp++; 5454eb5378fSStefano Zampini break; 5464eb5378fSStefano Zampini case MATPRODUCT_PtAP: 5474eb5378fSStefano Zampini ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&mmdata->startsj_s,&mmdata->startsj_r,&mmdata->bufa,&mmdata->P_oth);CHKERRQ(ierr); 5484eb5378fSStefano Zampini /* P is product->B */ 5494eb5378fSStefano Zampini ierr = MatMPIAIJGetLocalMatMerge(P,MAT_INITIAL_MATRIX,&glob,&mmdata->Bloc);CHKERRQ(ierr); 5504eb5378fSStefano Zampini ierr = MatProductCreate(a->A,mmdata->Bloc,NULL,&mp[cp]);CHKERRQ(ierr); 5514eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_PtAP);CHKERRQ(ierr); 5524eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 5534eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 5544eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 5554eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 5564eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 5574eb5378fSStefano Zampini ierr = ISGetIndices(glob,&globidx);CHKERRQ(ierr); 5584eb5378fSStefano Zampini rmapt[cp] = 2; 5594eb5378fSStefano Zampini rmapa[cp] = globidx; 5604eb5378fSStefano Zampini cmapt[cp] = 2; 5614eb5378fSStefano Zampini cmapa[cp] = globidx; 5624eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 5634eb5378fSStefano Zampini cp++; 5644eb5378fSStefano Zampini if (mmdata->P_oth) { 5654eb5378fSStefano Zampini ierr = MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth,&P_oth_l2g);CHKERRQ(ierr); 5664eb5378fSStefano Zampini ierr = MatSetType(mmdata->P_oth,((PetscObject)(a->B))->type_name);CHKERRQ(ierr); 5674eb5378fSStefano Zampini ierr = ISLocalToGlobalMappingGetIndices(P_oth_l2g,&P_oth_idx);CHKERRQ(ierr); 5684eb5378fSStefano Zampini ierr = MatProductCreate(a->B,mmdata->P_oth,NULL,&mp[cp]);CHKERRQ(ierr); 5694eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AB);CHKERRQ(ierr); 5704eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 5714eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 5724eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 5734eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 5744eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 5754eb5378fSStefano Zampini mptmp[cp] = PETSC_TRUE; 5764eb5378fSStefano Zampini cp++; 5774eb5378fSStefano Zampini ierr = MatProductCreate(mmdata->Bloc,mp[1],NULL,&mp[cp]);CHKERRQ(ierr); 5784eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AtB);CHKERRQ(ierr); 5794eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 5804eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 5814eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 5824eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 5834eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 5844eb5378fSStefano Zampini rmapt[cp] = 2; 5854eb5378fSStefano Zampini rmapa[cp] = globidx; 5864eb5378fSStefano Zampini cmapt[cp] = 2; 5874eb5378fSStefano Zampini cmapa[cp] = P_oth_idx; 5884eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 5894eb5378fSStefano Zampini cp++; 5904eb5378fSStefano Zampini } 5914eb5378fSStefano Zampini break; 5924eb5378fSStefano Zampini default: 5934eb5378fSStefano Zampini SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Not for product type %s",MatProductTypes[ptype]); 5944eb5378fSStefano Zampini } 5954eb5378fSStefano Zampini ierr = PetscMalloc1(cp,&mmdata->mp);CHKERRQ(ierr); 5964eb5378fSStefano Zampini for (i = 0; i < cp; i++) mmdata->mp[i] = mp[i]; 5974eb5378fSStefano Zampini ierr = PetscMalloc1(cp,&mmdata->mptmp);CHKERRQ(ierr); 5984eb5378fSStefano Zampini for (i = 0; i < cp; i++) mmdata->mptmp[i] = mptmp[i]; 5994eb5378fSStefano Zampini mmdata->cp = cp; 6004eb5378fSStefano Zampini C->product->data = mmdata; 6014eb5378fSStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJCUSPARSE; 6024eb5378fSStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJCUSPARSE_MPIAIJCUSPARSE; 6034eb5378fSStefano Zampini 6044eb5378fSStefano Zampini /* prepare coo coordinates for values insertion */ 6054eb5378fSStefano Zampini ncoo = 0; 6064eb5378fSStefano Zampini for (cp = 0; cp < mmdata->cp; cp++) { 6074eb5378fSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ*)mp[cp]->data; 6084eb5378fSStefano Zampini if (mptmp[cp]) continue; 6094eb5378fSStefano Zampini ncoo += mm->nz; 6104eb5378fSStefano Zampini } 6114eb5378fSStefano Zampini ierr = PetscMalloc2(ncoo,&coo_i,ncoo,&coo_j);CHKERRQ(ierr); 6124eb5378fSStefano Zampini ncoo = 0; 6134eb5378fSStefano Zampini for (cp = 0; cp < mmdata->cp; cp++) { 6144eb5378fSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ*)mp[cp]->data; 6154eb5378fSStefano Zampini PetscInt *coi = coo_i + ncoo; 6164eb5378fSStefano Zampini PetscInt *coj = coo_j + ncoo; 6174eb5378fSStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 6184eb5378fSStefano Zampini const PetscInt *jj = mm->j; 6194eb5378fSStefano Zampini const PetscInt *ii = mm->i; 6204eb5378fSStefano Zampini 6214eb5378fSStefano Zampini if (mptmp[cp]) continue; 6224eb5378fSStefano Zampini /* rows coo */ 6234eb5378fSStefano Zampini if (!rmapt[cp]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"This should not happen"); 6244eb5378fSStefano Zampini else if (rmapt[cp] == 1) { /* local to global for owned rows of */ 6254eb5378fSStefano Zampini const PetscInt rs = C->rmap->rstart; 6264eb5378fSStefano Zampini for (i = 0; i < mr; i++) { 6274eb5378fSStefano Zampini const PetscInt gr = i + rs; 6284eb5378fSStefano Zampini for (j = ii[i]; j < ii[i+1]; j++) { 6294eb5378fSStefano Zampini coi[j] = gr; 6304eb5378fSStefano Zampini } 6314eb5378fSStefano Zampini } 6324eb5378fSStefano Zampini } else { /* offprocess */ 6334eb5378fSStefano Zampini const PetscInt *rmap = rmapa[cp]; 6344eb5378fSStefano Zampini for (i = 0; i < mr; i++) { 6354eb5378fSStefano Zampini const PetscInt gr = rmap[i]; 6364eb5378fSStefano Zampini for (j = ii[i]; j < ii[i+1]; j++) { 6374eb5378fSStefano Zampini coi[j] = gr; 6384eb5378fSStefano Zampini } 6394eb5378fSStefano Zampini } 6404eb5378fSStefano Zampini } 6414eb5378fSStefano Zampini /* columns coo */ 6424eb5378fSStefano Zampini if (!cmapt[cp]) { 6434eb5378fSStefano Zampini ierr = PetscArraycpy(coj,jj,mm->nz);CHKERRQ(ierr); 6444eb5378fSStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of P */ 6454eb5378fSStefano Zampini const PetscInt cs = P->cmap->rstart; 6464eb5378fSStefano Zampini for (j = 0; j < mm->nz; j++) { 6474eb5378fSStefano Zampini coj[j] = jj[j] + cs; 6484eb5378fSStefano Zampini } 6494eb5378fSStefano Zampini } else { /* offdiag */ 6504eb5378fSStefano Zampini const PetscInt *cmap = cmapa[cp]; 6514eb5378fSStefano Zampini for (j = 0; j < mm->nz; j++) { 6524eb5378fSStefano Zampini coj[j] = cmap[jj[j]]; 6534eb5378fSStefano Zampini } 6544eb5378fSStefano Zampini } 6554eb5378fSStefano Zampini ncoo += mm->nz; 6564eb5378fSStefano Zampini } 6574eb5378fSStefano Zampini if (glob) { 6584eb5378fSStefano Zampini ierr = ISRestoreIndices(glob,&globidx);CHKERRQ(ierr); 6594eb5378fSStefano Zampini } 6604eb5378fSStefano Zampini ierr = ISDestroy(&glob);CHKERRQ(ierr); 6614eb5378fSStefano Zampini if (P_oth_l2g) { 6624eb5378fSStefano Zampini ierr = ISLocalToGlobalMappingRestoreIndices(P_oth_l2g,&P_oth_idx);CHKERRQ(ierr); 6634eb5378fSStefano Zampini } 6644eb5378fSStefano Zampini ierr = ISLocalToGlobalMappingDestroy(&P_oth_l2g);CHKERRQ(ierr); 6654eb5378fSStefano Zampini 6664eb5378fSStefano Zampini if (hasoffproc) { /* offproc values insertion */ 6674eb5378fSStefano Zampini const PetscInt *sfdeg; 6684eb5378fSStefano Zampini const PetscInt n = P->cmap->n; 6694eb5378fSStefano Zampini PetscInt ncoo2,*coo_i2,*coo_j2; 6704eb5378fSStefano Zampini 6714eb5378fSStefano Zampini ierr = PetscSFCreate(PetscObjectComm((PetscObject)C),&mmdata->sf);CHKERRQ(ierr); 6724eb5378fSStefano Zampini ierr = PetscSFSetGraphLayout(mmdata->sf,P->cmap,ncoo,NULL,PETSC_OWN_POINTER,coo_i);CHKERRQ(ierr); 6734eb5378fSStefano Zampini ierr = PetscSFComputeDegreeBegin(mmdata->sf,&sfdeg);CHKERRQ(ierr); 6744eb5378fSStefano Zampini ierr = PetscSFComputeDegreeEnd(mmdata->sf,&sfdeg);CHKERRQ(ierr); 6754eb5378fSStefano Zampini for (i = 0, ncoo2 = 0; i < n; i++) ncoo2 += sfdeg[i]; 6764eb5378fSStefano Zampini ierr = PetscMalloc2(ncoo2,&coo_i2,ncoo2,&coo_j2);CHKERRQ(ierr); 6774eb5378fSStefano Zampini ierr = PetscSFGatherBegin(mmdata->sf,MPIU_INT,coo_i,coo_i2);CHKERRQ(ierr); 6784eb5378fSStefano Zampini ierr = PetscSFGatherEnd(mmdata->sf,MPIU_INT,coo_i,coo_i2);CHKERRQ(ierr); 6794eb5378fSStefano Zampini ierr = PetscSFGatherBegin(mmdata->sf,MPIU_INT,coo_j,coo_j2);CHKERRQ(ierr); 6804eb5378fSStefano Zampini ierr = PetscSFGatherEnd(mmdata->sf,MPIU_INT,coo_j,coo_j2);CHKERRQ(ierr); 6814eb5378fSStefano Zampini ierr = PetscFree2(coo_i,coo_j);CHKERRQ(ierr); 6824eb5378fSStefano Zampini ierr = PetscMalloc1(ncoo,&mmdata->coo_w);CHKERRQ(ierr); 6834eb5378fSStefano Zampini coo_i = coo_i2; 6844eb5378fSStefano Zampini coo_j = coo_j2; 6854eb5378fSStefano Zampini ncoo = ncoo2; 6864eb5378fSStefano Zampini } 6874eb5378fSStefano Zampini 6884eb5378fSStefano Zampini /* preallocate with COO data */ 6894eb5378fSStefano Zampini ierr = MatSetPreallocationCOO(C,ncoo,coo_i,coo_j);CHKERRQ(ierr); 6904eb5378fSStefano Zampini ierr = PetscMalloc1(ncoo,&mmdata->coo_v);CHKERRQ(ierr); 6914eb5378fSStefano Zampini ierr = PetscFree2(coo_i,coo_j);CHKERRQ(ierr); 6924eb5378fSStefano Zampini PetscFunctionReturn(0); 6934eb5378fSStefano Zampini } 6944eb5378fSStefano Zampini 6954eb5378fSStefano Zampini static PetscErrorCode MatProductSetFromOptions_MPIAIJCUSPARSE(Mat mat) 6964eb5378fSStefano Zampini { 6974eb5378fSStefano Zampini Mat_Product *product = mat->product; 6984eb5378fSStefano Zampini PetscErrorCode ierr; 6994eb5378fSStefano Zampini PetscBool Biscusp = PETSC_FALSE; 7004eb5378fSStefano Zampini 7014eb5378fSStefano Zampini PetscFunctionBegin; 7024eb5378fSStefano Zampini MatCheckProduct(mat,1); 7034eb5378fSStefano Zampini if (!product->B->boundtocpu) { 7044eb5378fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)product->B,MATMPIAIJCUSPARSE,&Biscusp);CHKERRQ(ierr); 7054eb5378fSStefano Zampini } 7064eb5378fSStefano Zampini if (Biscusp) { 7074eb5378fSStefano Zampini switch (product->type) { 7084eb5378fSStefano Zampini case MATPRODUCT_AB: 7094eb5378fSStefano Zampini case MATPRODUCT_AtB: 7104eb5378fSStefano Zampini case MATPRODUCT_PtAP: 7114eb5378fSStefano Zampini mat->ops->productsymbolic = MatProductSymbolic_MPIAIJCUSPARSE_MPIAIJCUSPARSE; 7124eb5378fSStefano Zampini break; 7134eb5378fSStefano Zampini default: 7144eb5378fSStefano Zampini break; 7154eb5378fSStefano Zampini } 7164eb5378fSStefano Zampini } 7174eb5378fSStefano Zampini if (!mat->ops->productsymbolic) { 7184eb5378fSStefano Zampini ierr = MatProductSetFromOptions_MPIAIJ(mat);CHKERRQ(ierr); 7194eb5378fSStefano Zampini } 7204eb5378fSStefano Zampini PetscFunctionReturn(0); 7214eb5378fSStefano Zampini } 7224eb5378fSStefano Zampini 723e589036eSStefano Zampini /*@ 724e589036eSStefano Zampini MatAIJCUSPARSESetGenerateTranspose - Sets the flag to explicitly generate the transpose matrix before calling MatMultTranspose 725e589036eSStefano Zampini 726e589036eSStefano Zampini Not collective 727e589036eSStefano Zampini 728e589036eSStefano Zampini Input Parameters: 729e589036eSStefano Zampini + A - Matrix of type SEQAIJCUSPARSE or MPIAIJCUSPARSE 730e589036eSStefano Zampini - gen - the boolean flag 731e589036eSStefano Zampini 732e589036eSStefano Zampini Level: intermediate 733e589036eSStefano Zampini 734e589036eSStefano Zampini .seealso: MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE 735e589036eSStefano Zampini @*/ 736e589036eSStefano Zampini PetscErrorCode MatAIJCUSPARSESetGenerateTranspose(Mat A, PetscBool gen) 737e589036eSStefano Zampini { 738e589036eSStefano Zampini PetscErrorCode ierr; 739e589036eSStefano Zampini PetscBool ismpiaij; 740e589036eSStefano Zampini 741e589036eSStefano Zampini PetscFunctionBegin; 742e589036eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 743e589036eSStefano Zampini MatCheckPreallocated(A,1); 744e589036eSStefano Zampini ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATMPIAIJ,&ismpiaij);CHKERRQ(ierr); 745e589036eSStefano Zampini if (ismpiaij) { 746e589036eSStefano Zampini Mat A_d,A_o; 747e589036eSStefano Zampini 748e589036eSStefano Zampini ierr = MatMPIAIJGetSeqAIJ(A,&A_d,&A_o,NULL);CHKERRQ(ierr); 749e589036eSStefano Zampini ierr = MatSeqAIJCUSPARSESetGenerateTranspose(A_d,gen);CHKERRQ(ierr); 750e589036eSStefano Zampini ierr = MatSeqAIJCUSPARSESetGenerateTranspose(A_o,gen);CHKERRQ(ierr); 751e589036eSStefano Zampini } else { 752e589036eSStefano Zampini ierr = MatSeqAIJCUSPARSESetGenerateTranspose(A,gen);CHKERRQ(ierr); 753e589036eSStefano Zampini } 754e589036eSStefano Zampini PetscFunctionReturn(0); 755e589036eSStefano Zampini } 756e589036eSStefano Zampini 7579ae82921SPaul Mullowney PetscErrorCode MatMult_MPIAIJCUSPARSE(Mat A,Vec xx,Vec yy) 7589ae82921SPaul Mullowney { 7599ae82921SPaul Mullowney Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 7609ae82921SPaul Mullowney PetscErrorCode ierr; 7619ae82921SPaul Mullowney PetscInt nt; 7629ae82921SPaul Mullowney 7639ae82921SPaul Mullowney PetscFunctionBegin; 7649ae82921SPaul Mullowney ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 7659ae82921SPaul Mullowney if (nt != A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%D) and xx (%D)",A->cmap->n,nt); 7669ae82921SPaul Mullowney ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 7674d55d066SJunchao Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 7689ae82921SPaul Mullowney ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 7699ae82921SPaul Mullowney ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 7709ae82921SPaul Mullowney PetscFunctionReturn(0); 7719ae82921SPaul Mullowney } 772ca45077fSPaul Mullowney 7733fa6b06aSMark Adams PetscErrorCode MatZeroEntries_MPIAIJCUSPARSE(Mat A) 7743fa6b06aSMark Adams { 7753fa6b06aSMark Adams Mat_MPIAIJ *l = (Mat_MPIAIJ*)A->data; 7763fa6b06aSMark Adams PetscErrorCode ierr; 7773fa6b06aSMark Adams 7783fa6b06aSMark Adams PetscFunctionBegin; 7793fa6b06aSMark Adams if (A->factortype == MAT_FACTOR_NONE) { 7803fa6b06aSMark Adams Mat_MPIAIJCUSPARSE *spptr = (Mat_MPIAIJCUSPARSE*)l->spptr; 7813fa6b06aSMark Adams PetscSplitCSRDataStructure *d_mat = spptr->deviceMat; 7823fa6b06aSMark Adams if (d_mat) { 7833fa6b06aSMark Adams Mat_SeqAIJ *a = (Mat_SeqAIJ*)l->A->data; 7843fa6b06aSMark Adams Mat_SeqAIJ *b = (Mat_SeqAIJ*)l->B->data; 7853fa6b06aSMark Adams PetscInt n = A->rmap->n, nnza = a->i[n], nnzb = b->i[n]; 7863fa6b06aSMark Adams cudaError_t err; 7873fa6b06aSMark Adams PetscScalar *vals; 7883fa6b06aSMark Adams ierr = PetscInfo(A,"Zero device matrix diag and offfdiag\n");CHKERRQ(ierr); 7893fa6b06aSMark Adams err = cudaMemcpy( &vals, &d_mat->diag.a, sizeof(PetscScalar*), cudaMemcpyDeviceToHost);CHKERRCUDA(err); 7903fa6b06aSMark Adams err = cudaMemset( vals, 0, (nnza)*sizeof(PetscScalar));CHKERRCUDA(err); 7913fa6b06aSMark Adams err = cudaMemcpy( &vals, &d_mat->offdiag.a, sizeof(PetscScalar*), cudaMemcpyDeviceToHost);CHKERRCUDA(err); 7923fa6b06aSMark Adams err = cudaMemset( vals, 0, (nnzb)*sizeof(PetscScalar));CHKERRCUDA(err); 7933fa6b06aSMark Adams } 7943fa6b06aSMark Adams } 7953fa6b06aSMark Adams ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 7963fa6b06aSMark Adams ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 7973fa6b06aSMark Adams 7983fa6b06aSMark Adams PetscFunctionReturn(0); 7993fa6b06aSMark Adams } 800fdc842d1SBarry Smith PetscErrorCode MatMultAdd_MPIAIJCUSPARSE(Mat A,Vec xx,Vec yy,Vec zz) 801fdc842d1SBarry Smith { 802fdc842d1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 803fdc842d1SBarry Smith PetscErrorCode ierr; 804fdc842d1SBarry Smith PetscInt nt; 805fdc842d1SBarry Smith 806fdc842d1SBarry Smith PetscFunctionBegin; 807fdc842d1SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 808fdc842d1SBarry Smith if (nt != A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%D) and xx (%D)",A->cmap->n,nt); 809fdc842d1SBarry Smith ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8104d55d066SJunchao Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 811fdc842d1SBarry Smith ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 812fdc842d1SBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 813fdc842d1SBarry Smith PetscFunctionReturn(0); 814fdc842d1SBarry Smith } 815fdc842d1SBarry Smith 816ca45077fSPaul Mullowney PetscErrorCode MatMultTranspose_MPIAIJCUSPARSE(Mat A,Vec xx,Vec yy) 817ca45077fSPaul Mullowney { 818ca45077fSPaul Mullowney Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 819ca45077fSPaul Mullowney PetscErrorCode ierr; 820ca45077fSPaul Mullowney PetscInt nt; 821ca45077fSPaul Mullowney 822ca45077fSPaul Mullowney PetscFunctionBegin; 823ca45077fSPaul Mullowney ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 824ccf5f80bSJunchao Zhang if (nt != A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%D) and xx (%D)",A->rmap->n,nt); 8259b2db222SKarl Rupp ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 826ca45077fSPaul Mullowney ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 8279b2db222SKarl Rupp ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 8289b2db222SKarl Rupp ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 829ca45077fSPaul Mullowney PetscFunctionReturn(0); 830ca45077fSPaul Mullowney } 8319ae82921SPaul Mullowney 832e057df02SPaul Mullowney PetscErrorCode MatCUSPARSESetFormat_MPIAIJCUSPARSE(Mat A,MatCUSPARSEFormatOperation op,MatCUSPARSEStorageFormat format) 833ca45077fSPaul Mullowney { 834ca45077fSPaul Mullowney Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 835bbf3fe20SPaul Mullowney Mat_MPIAIJCUSPARSE * cusparseStruct = (Mat_MPIAIJCUSPARSE*)a->spptr; 836e057df02SPaul Mullowney 837ca45077fSPaul Mullowney PetscFunctionBegin; 838e057df02SPaul Mullowney switch (op) { 839e057df02SPaul Mullowney case MAT_CUSPARSE_MULT_DIAG: 840e057df02SPaul Mullowney cusparseStruct->diagGPUMatFormat = format; 841045c96e1SPaul Mullowney break; 842e057df02SPaul Mullowney case MAT_CUSPARSE_MULT_OFFDIAG: 843e057df02SPaul Mullowney cusparseStruct->offdiagGPUMatFormat = format; 844045c96e1SPaul Mullowney break; 845e057df02SPaul Mullowney case MAT_CUSPARSE_ALL: 846e057df02SPaul Mullowney cusparseStruct->diagGPUMatFormat = format; 847e057df02SPaul Mullowney cusparseStruct->offdiagGPUMatFormat = format; 848045c96e1SPaul Mullowney break; 849e057df02SPaul Mullowney default: 850e057df02SPaul Mullowney SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unsupported operation %d for MatCUSPARSEFormatOperation. Only MAT_CUSPARSE_MULT_DIAG, MAT_CUSPARSE_MULT_DIAG, and MAT_CUSPARSE_MULT_ALL are currently supported.",op); 851045c96e1SPaul Mullowney } 852ca45077fSPaul Mullowney PetscFunctionReturn(0); 853ca45077fSPaul Mullowney } 854e057df02SPaul Mullowney 8554416b707SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJCUSPARSE(PetscOptionItems *PetscOptionsObject,Mat A) 856e057df02SPaul Mullowney { 857e057df02SPaul Mullowney MatCUSPARSEStorageFormat format; 858e057df02SPaul Mullowney PetscErrorCode ierr; 859e057df02SPaul Mullowney PetscBool flg; 860a183c035SDominic Meiser Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 861a183c035SDominic Meiser Mat_MPIAIJCUSPARSE *cusparseStruct = (Mat_MPIAIJCUSPARSE*)a->spptr; 8625fd66863SKarl Rupp 863e057df02SPaul Mullowney PetscFunctionBegin; 864e55864a3SBarry Smith ierr = PetscOptionsHead(PetscOptionsObject,"MPIAIJCUSPARSE options");CHKERRQ(ierr); 865e057df02SPaul Mullowney if (A->factortype==MAT_FACTOR_NONE) { 866e057df02SPaul Mullowney ierr = PetscOptionsEnum("-mat_cusparse_mult_diag_storage_format","sets storage format of the diagonal blocks of (mpi)aijcusparse gpu matrices for SpMV", 867a183c035SDominic Meiser "MatCUSPARSESetFormat",MatCUSPARSEStorageFormats,(PetscEnum)cusparseStruct->diagGPUMatFormat,(PetscEnum*)&format,&flg);CHKERRQ(ierr); 868e057df02SPaul Mullowney if (flg) { 869e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(A,MAT_CUSPARSE_MULT_DIAG,format);CHKERRQ(ierr); 870e057df02SPaul Mullowney } 871e057df02SPaul Mullowney ierr = PetscOptionsEnum("-mat_cusparse_mult_offdiag_storage_format","sets storage format of the off-diagonal blocks (mpi)aijcusparse gpu matrices for SpMV", 872a183c035SDominic Meiser "MatCUSPARSESetFormat",MatCUSPARSEStorageFormats,(PetscEnum)cusparseStruct->offdiagGPUMatFormat,(PetscEnum*)&format,&flg);CHKERRQ(ierr); 873e057df02SPaul Mullowney if (flg) { 874e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(A,MAT_CUSPARSE_MULT_OFFDIAG,format);CHKERRQ(ierr); 875e057df02SPaul Mullowney } 876e057df02SPaul Mullowney ierr = PetscOptionsEnum("-mat_cusparse_storage_format","sets storage format of the diagonal and off-diagonal blocks (mpi)aijcusparse gpu matrices for SpMV", 877a183c035SDominic Meiser "MatCUSPARSESetFormat",MatCUSPARSEStorageFormats,(PetscEnum)cusparseStruct->diagGPUMatFormat,(PetscEnum*)&format,&flg);CHKERRQ(ierr); 878e057df02SPaul Mullowney if (flg) { 879e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(A,MAT_CUSPARSE_ALL,format);CHKERRQ(ierr); 880e057df02SPaul Mullowney } 881e057df02SPaul Mullowney } 8820af67c1bSStefano Zampini ierr = PetscOptionsTail();CHKERRQ(ierr); 883e057df02SPaul Mullowney PetscFunctionReturn(0); 884e057df02SPaul Mullowney } 885e057df02SPaul Mullowney 88634d6c7a5SJose E. Roman PetscErrorCode MatAssemblyEnd_MPIAIJCUSPARSE(Mat A,MatAssemblyType mode) 88734d6c7a5SJose E. Roman { 88834d6c7a5SJose E. Roman PetscErrorCode ierr; 8893fa6b06aSMark Adams Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)A->data; 8903fa6b06aSMark Adams Mat_MPIAIJCUSPARSE *cusparseStruct = (Mat_MPIAIJCUSPARSE*)mpiaij->spptr; 8913fa6b06aSMark Adams PetscSplitCSRDataStructure *d_mat = cusparseStruct->deviceMat; 89234d6c7a5SJose E. Roman PetscFunctionBegin; 89334d6c7a5SJose E. Roman ierr = MatAssemblyEnd_MPIAIJ(A,mode);CHKERRQ(ierr); 89434d6c7a5SJose E. Roman if (!A->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 89534d6c7a5SJose E. Roman ierr = VecSetType(mpiaij->lvec,VECSEQCUDA);CHKERRQ(ierr); 89634d6c7a5SJose E. Roman } 897a587d139SMark if (d_mat) { 8983fa6b06aSMark Adams A->offloadmask = PETSC_OFFLOAD_GPU; // if we assembled on the device 8993fa6b06aSMark Adams } 9003fa6b06aSMark Adams 90134d6c7a5SJose E. Roman PetscFunctionReturn(0); 90234d6c7a5SJose E. Roman } 90334d6c7a5SJose E. Roman 904bbf3fe20SPaul Mullowney PetscErrorCode MatDestroy_MPIAIJCUSPARSE(Mat A) 905bbf3fe20SPaul Mullowney { 906bbf3fe20SPaul Mullowney PetscErrorCode ierr; 9073fa6b06aSMark Adams Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 9083fa6b06aSMark Adams Mat_MPIAIJCUSPARSE *cusparseStruct = (Mat_MPIAIJCUSPARSE*)aij->spptr; 909b06137fdSPaul Mullowney cudaError_t err; 910b06137fdSPaul Mullowney cusparseStatus_t stat; 911bbf3fe20SPaul Mullowney 912bbf3fe20SPaul Mullowney PetscFunctionBegin; 913d98d7c49SStefano Zampini if (!cusparseStruct) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing spptr"); 9143fa6b06aSMark Adams if (cusparseStruct->deviceMat) { 9153fa6b06aSMark Adams Mat_SeqAIJ *jaca = (Mat_SeqAIJ*)aij->A->data; 9163fa6b06aSMark Adams Mat_SeqAIJ *jacb = (Mat_SeqAIJ*)aij->B->data; 9173fa6b06aSMark Adams PetscSplitCSRDataStructure *d_mat = cusparseStruct->deviceMat, h_mat; 9183fa6b06aSMark Adams ierr = PetscInfo(A,"Have device matrix\n");CHKERRQ(ierr); 9193fa6b06aSMark Adams err = cudaMemcpy( &h_mat, d_mat, sizeof(PetscSplitCSRDataStructure), cudaMemcpyDeviceToHost);CHKERRCUDA(err); 9203fa6b06aSMark Adams if (jaca->compressedrow.use) { 9213fa6b06aSMark Adams err = cudaFree(h_mat.diag.i);CHKERRCUDA(err); 9223fa6b06aSMark Adams } 9233fa6b06aSMark Adams if (jacb->compressedrow.use) { 9243fa6b06aSMark Adams err = cudaFree(h_mat.offdiag.i);CHKERRCUDA(err); 9253fa6b06aSMark Adams } 9263fa6b06aSMark Adams err = cudaFree(h_mat.colmap);CHKERRCUDA(err); 9273fa6b06aSMark Adams err = cudaFree(d_mat);CHKERRCUDA(err); 9283fa6b06aSMark Adams } 929bbf3fe20SPaul Mullowney try { 9303fa6b06aSMark Adams if (aij->A) { ierr = MatCUSPARSEClearHandle(aij->A);CHKERRQ(ierr); } 9313fa6b06aSMark Adams if (aij->B) { ierr = MatCUSPARSEClearHandle(aij->B);CHKERRQ(ierr); } 93257d48284SJunchao Zhang stat = cusparseDestroy(cusparseStruct->handle);CHKERRCUSPARSE(stat); 93317403302SKarl Rupp if (cusparseStruct->stream) { 934c41cb2e2SAlejandro Lamas Daviña err = cudaStreamDestroy(cusparseStruct->stream);CHKERRCUDA(err); 93517403302SKarl Rupp } 9367e8381f9SStefano Zampini delete cusparseStruct->coo_p; 9377e8381f9SStefano Zampini delete cusparseStruct->coo_pw; 938bbf3fe20SPaul Mullowney delete cusparseStruct; 939bbf3fe20SPaul Mullowney } catch(char *ex) { 940bbf3fe20SPaul Mullowney SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Mat_MPIAIJCUSPARSE error: %s", ex); 941bbf3fe20SPaul Mullowney } 9423338378cSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 943ed502f03SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJGetLocalMatMerge_C",NULL);CHKERRQ(ierr); 9447e8381f9SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatSetPreallocationCOO_C",NULL);CHKERRQ(ierr); 9457e8381f9SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatSetValuesCOO_C",NULL);CHKERRQ(ierr); 9463338378cSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatCUSPARSESetFormat_C",NULL);CHKERRQ(ierr); 947bbf3fe20SPaul Mullowney ierr = MatDestroy_MPIAIJ(A);CHKERRQ(ierr); 948bbf3fe20SPaul Mullowney PetscFunctionReturn(0); 949bbf3fe20SPaul Mullowney } 950ca45077fSPaul Mullowney 9513338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat B, MatType mtype, MatReuse reuse, Mat* newmat) 9529ae82921SPaul Mullowney { 9539ae82921SPaul Mullowney PetscErrorCode ierr; 954bbf3fe20SPaul Mullowney Mat_MPIAIJ *a; 955bbf3fe20SPaul Mullowney Mat_MPIAIJCUSPARSE *cusparseStruct; 956b06137fdSPaul Mullowney cusparseStatus_t stat; 9573338378cSStefano Zampini Mat A; 9589ae82921SPaul Mullowney 9599ae82921SPaul Mullowney PetscFunctionBegin; 9603338378cSStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 9613338378cSStefano Zampini ierr = MatDuplicate(B,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 9623338378cSStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 9633338378cSStefano Zampini ierr = MatCopy(B,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 9643338378cSStefano Zampini } 9653338378cSStefano Zampini A = *newmat; 9663338378cSStefano Zampini 96734136279SStefano Zampini ierr = PetscFree(A->defaultvectype);CHKERRQ(ierr); 96834136279SStefano Zampini ierr = PetscStrallocpy(VECCUDA,&A->defaultvectype);CHKERRQ(ierr); 96934136279SStefano Zampini 970bbf3fe20SPaul Mullowney a = (Mat_MPIAIJ*)A->data; 971d98d7c49SStefano Zampini if (a->A) { ierr = MatSetType(a->A,MATSEQAIJCUSPARSE);CHKERRQ(ierr); } 972d98d7c49SStefano Zampini if (a->B) { ierr = MatSetType(a->B,MATSEQAIJCUSPARSE);CHKERRQ(ierr); } 973d98d7c49SStefano Zampini if (a->lvec) { 974d98d7c49SStefano Zampini ierr = VecSetType(a->lvec,VECSEQCUDA);CHKERRQ(ierr); 975d98d7c49SStefano Zampini } 976d98d7c49SStefano Zampini 9773338378cSStefano Zampini if (reuse != MAT_REUSE_MATRIX && !a->spptr) { 978bbf3fe20SPaul Mullowney a->spptr = new Mat_MPIAIJCUSPARSE; 9792205254eSKarl Rupp 980bbf3fe20SPaul Mullowney cusparseStruct = (Mat_MPIAIJCUSPARSE*)a->spptr; 981e057df02SPaul Mullowney cusparseStruct->diagGPUMatFormat = MAT_CUSPARSE_CSR; 982e057df02SPaul Mullowney cusparseStruct->offdiagGPUMatFormat = MAT_CUSPARSE_CSR; 9837e8381f9SStefano Zampini cusparseStruct->coo_p = NULL; 9847e8381f9SStefano Zampini cusparseStruct->coo_pw = NULL; 98517403302SKarl Rupp cusparseStruct->stream = 0; 98657d48284SJunchao Zhang stat = cusparseCreate(&(cusparseStruct->handle));CHKERRCUSPARSE(stat); 9873fa6b06aSMark Adams cusparseStruct->deviceMat = NULL; 9883338378cSStefano Zampini } 9892205254eSKarl Rupp 99034d6c7a5SJose E. Roman A->ops->assemblyend = MatAssemblyEnd_MPIAIJCUSPARSE; 991bbf3fe20SPaul Mullowney A->ops->mult = MatMult_MPIAIJCUSPARSE; 992fdc842d1SBarry Smith A->ops->multadd = MatMultAdd_MPIAIJCUSPARSE; 993bbf3fe20SPaul Mullowney A->ops->multtranspose = MatMultTranspose_MPIAIJCUSPARSE; 994bbf3fe20SPaul Mullowney A->ops->setfromoptions = MatSetFromOptions_MPIAIJCUSPARSE; 995bbf3fe20SPaul Mullowney A->ops->destroy = MatDestroy_MPIAIJCUSPARSE; 9963fa6b06aSMark Adams A->ops->zeroentries = MatZeroEntries_MPIAIJCUSPARSE; 9974eb5378fSStefano Zampini A->ops->productsetfromoptions = MatProductSetFromOptions_MPIAIJCUSPARSE; 9982205254eSKarl Rupp 999bbf3fe20SPaul Mullowney ierr = PetscObjectChangeTypeName((PetscObject)A,MATMPIAIJCUSPARSE);CHKERRQ(ierr); 1000ed502f03SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJGetLocalMatMerge_C",MatMPIAIJGetLocalMatMerge_MPIAIJCUSPARSE);CHKERRQ(ierr); 10013338378cSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJSetPreallocation_C",MatMPIAIJSetPreallocation_MPIAIJCUSPARSE);CHKERRQ(ierr); 1002bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatCUSPARSESetFormat_C",MatCUSPARSESetFormat_MPIAIJCUSPARSE);CHKERRQ(ierr); 10037e8381f9SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatSetPreallocationCOO_C",MatSetPreallocationCOO_MPIAIJCUSPARSE);CHKERRQ(ierr); 10047e8381f9SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatSetValuesCOO_C",MatSetValuesCOO_MPIAIJCUSPARSE);CHKERRQ(ierr); 10059ae82921SPaul Mullowney PetscFunctionReturn(0); 10069ae82921SPaul Mullowney } 10079ae82921SPaul Mullowney 10083338378cSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJCUSPARSE(Mat A) 10093338378cSStefano Zampini { 10103338378cSStefano Zampini PetscErrorCode ierr; 10113338378cSStefano Zampini 10123338378cSStefano Zampini PetscFunctionBegin; 101305035670SJunchao Zhang ierr = PetscCUDAInitializeCheck();CHKERRQ(ierr); 10143338378cSStefano Zampini ierr = MatCreate_MPIAIJ(A);CHKERRQ(ierr); 10153338378cSStefano Zampini ierr = MatConvert_MPIAIJ_MPIAIJCUSPARSE(A,MATMPIAIJCUSPARSE,MAT_INPLACE_MATRIX,&A);CHKERRQ(ierr); 10163338378cSStefano Zampini PetscFunctionReturn(0); 10173338378cSStefano Zampini } 10183338378cSStefano Zampini 10193f9c0db1SPaul Mullowney /*@ 10203f9c0db1SPaul Mullowney MatCreateAIJCUSPARSE - Creates a sparse matrix in AIJ (compressed row) format 1021e057df02SPaul Mullowney (the default parallel PETSc format). This matrix will ultimately pushed down 10223f9c0db1SPaul Mullowney to NVidia GPUs and use the CUSPARSE library for calculations. For good matrix 1023e057df02SPaul Mullowney assembly performance the user should preallocate the matrix storage by setting 1024e057df02SPaul Mullowney the parameter nz (or the array nnz). By setting these parameters accurately, 1025e057df02SPaul Mullowney performance during matrix assembly can be increased by more than a factor of 50. 10269ae82921SPaul Mullowney 1027d083f849SBarry Smith Collective 1028e057df02SPaul Mullowney 1029e057df02SPaul Mullowney Input Parameters: 1030e057df02SPaul Mullowney + comm - MPI communicator, set to PETSC_COMM_SELF 1031e057df02SPaul Mullowney . m - number of rows 1032e057df02SPaul Mullowney . n - number of columns 1033e057df02SPaul Mullowney . nz - number of nonzeros per row (same for all rows) 1034e057df02SPaul Mullowney - nnz - array containing the number of nonzeros in the various rows 10350298fd71SBarry Smith (possibly different for each row) or NULL 1036e057df02SPaul Mullowney 1037e057df02SPaul Mullowney Output Parameter: 1038e057df02SPaul Mullowney . A - the matrix 1039e057df02SPaul Mullowney 1040e057df02SPaul Mullowney It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1041e057df02SPaul Mullowney MatXXXXSetPreallocation() paradigm instead of this routine directly. 1042e057df02SPaul Mullowney [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1043e057df02SPaul Mullowney 1044e057df02SPaul Mullowney Notes: 1045e057df02SPaul Mullowney If nnz is given then nz is ignored 1046e057df02SPaul Mullowney 1047e057df02SPaul Mullowney The AIJ format (also called the Yale sparse matrix format or 1048e057df02SPaul Mullowney compressed row storage), is fully compatible with standard Fortran 77 1049e057df02SPaul Mullowney storage. That is, the stored row and column indices can begin at 1050e057df02SPaul Mullowney either one (as in Fortran) or zero. See the users' manual for details. 1051e057df02SPaul Mullowney 1052e057df02SPaul Mullowney Specify the preallocated storage with either nz or nnz (not both). 10530298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 1054e057df02SPaul Mullowney allocation. For large problems you MUST preallocate memory or you 1055e057df02SPaul Mullowney will get TERRIBLE performance, see the users' manual chapter on matrices. 1056e057df02SPaul Mullowney 1057e057df02SPaul Mullowney By default, this format uses inodes (identical nodes) when possible, to 1058e057df02SPaul Mullowney improve numerical efficiency of matrix-vector products and solves. We 1059e057df02SPaul Mullowney search for consecutive rows with the same nonzero structure, thereby 1060e057df02SPaul Mullowney reusing matrix information to achieve increased efficiency. 1061e057df02SPaul Mullowney 1062e057df02SPaul Mullowney Level: intermediate 1063e057df02SPaul Mullowney 1064e057df02SPaul Mullowney .seealso: MatCreate(), MatCreateAIJ(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ(), MATMPIAIJCUSPARSE, MATAIJCUSPARSE 1065e057df02SPaul Mullowney @*/ 10669ae82921SPaul Mullowney PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 10679ae82921SPaul Mullowney { 10689ae82921SPaul Mullowney PetscErrorCode ierr; 10699ae82921SPaul Mullowney PetscMPIInt size; 10709ae82921SPaul Mullowney 10719ae82921SPaul Mullowney PetscFunctionBegin; 10729ae82921SPaul Mullowney ierr = MatCreate(comm,A);CHKERRQ(ierr); 10739ae82921SPaul Mullowney ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1074ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 10759ae82921SPaul Mullowney if (size > 1) { 10769ae82921SPaul Mullowney ierr = MatSetType(*A,MATMPIAIJCUSPARSE);CHKERRQ(ierr); 10779ae82921SPaul Mullowney ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 10789ae82921SPaul Mullowney } else { 10799ae82921SPaul Mullowney ierr = MatSetType(*A,MATSEQAIJCUSPARSE);CHKERRQ(ierr); 10809ae82921SPaul Mullowney ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr); 10819ae82921SPaul Mullowney } 10829ae82921SPaul Mullowney PetscFunctionReturn(0); 10839ae82921SPaul Mullowney } 10849ae82921SPaul Mullowney 10853ca39a21SBarry Smith /*MC 1086e057df02SPaul Mullowney MATAIJCUSPARSE - MATMPIAIJCUSPARSE = "aijcusparse" = "mpiaijcusparse" - A matrix type to be used for sparse matrices. 1087e057df02SPaul Mullowney 10882692e278SPaul Mullowney A matrix type type whose data resides on Nvidia GPUs. These matrices can be in either 10892692e278SPaul Mullowney CSR, ELL, or Hybrid format. The ELL and HYB formats require CUDA 4.2 or later. 10902692e278SPaul Mullowney All matrix calculations are performed on Nvidia GPUs using the CUSPARSE library. 10919ae82921SPaul Mullowney 10929ae82921SPaul Mullowney This matrix type is identical to MATSEQAIJCUSPARSE when constructed with a single process communicator, 10939ae82921SPaul Mullowney and MATMPIAIJCUSPARSE otherwise. As a result, for single process communicators, 10949ae82921SPaul Mullowney MatSeqAIJSetPreallocation is supported, and similarly MatMPIAIJSetPreallocation is supported 10959ae82921SPaul Mullowney for communicators controlling multiple processes. It is recommended that you call both of 10969ae82921SPaul Mullowney the above preallocation routines for simplicity. 10979ae82921SPaul Mullowney 10989ae82921SPaul Mullowney Options Database Keys: 1099e057df02SPaul Mullowney + -mat_type mpiaijcusparse - sets the matrix type to "mpiaijcusparse" during a call to MatSetFromOptions() 11008468deeeSKarl Rupp . -mat_cusparse_storage_format csr - sets the storage format of diagonal and off-diagonal matrices during a call to MatSetFromOptions(). Other options include ell (ellpack) or hyb (hybrid). 11018468deeeSKarl Rupp . -mat_cusparse_mult_diag_storage_format csr - sets the storage format of diagonal matrix during a call to MatSetFromOptions(). Other options include ell (ellpack) or hyb (hybrid). 11028468deeeSKarl Rupp - -mat_cusparse_mult_offdiag_storage_format csr - sets the storage format of off-diagonal matrix during a call to MatSetFromOptions(). Other options include ell (ellpack) or hyb (hybrid). 11039ae82921SPaul Mullowney 11049ae82921SPaul Mullowney Level: beginner 11059ae82921SPaul Mullowney 11068468deeeSKarl Rupp .seealso: MatCreateAIJCUSPARSE(), MATSEQAIJCUSPARSE, MatCreateSeqAIJCUSPARSE(), MatCUSPARSESetFormat(), MatCUSPARSEStorageFormat, MatCUSPARSEFormatOperation 11078468deeeSKarl Rupp M 11089ae82921SPaul Mullowney M*/ 11093fa6b06aSMark Adams 11103fa6b06aSMark Adams // get GPU pointer to stripped down Mat. For both Seq and MPI Mat. 11113fa6b06aSMark Adams PetscErrorCode MatCUSPARSEGetDeviceMatWrite(Mat A, PetscSplitCSRDataStructure **B) 11123fa6b06aSMark Adams { 11139db3cbf9SStefano Zampini #if defined(PETSC_USE_CTABLE) 11149db3cbf9SStefano Zampini SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Device metadata does not support ctable (--with-ctable=0)"); 11159db3cbf9SStefano Zampini #else 11163fa6b06aSMark Adams PetscSplitCSRDataStructure **p_d_mat; 11173fa6b06aSMark Adams PetscMPIInt size,rank; 11183fa6b06aSMark Adams MPI_Comm comm; 11193fa6b06aSMark Adams PetscErrorCode ierr; 11203fa6b06aSMark Adams int *ai,*bi,*aj,*bj; 11213fa6b06aSMark Adams PetscScalar *aa,*ba; 11223fa6b06aSMark Adams 11233fa6b06aSMark Adams PetscFunctionBegin; 11243fa6b06aSMark Adams ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1125ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 1126ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 11273fa6b06aSMark Adams if (A->factortype == MAT_FACTOR_NONE) { 11283fa6b06aSMark Adams CsrMatrix *matrixA,*matrixB=NULL; 11293fa6b06aSMark Adams if (size == 1) { 11303fa6b06aSMark Adams Mat_SeqAIJCUSPARSE *cusparsestruct = (Mat_SeqAIJCUSPARSE*)A->spptr; 11313fa6b06aSMark Adams p_d_mat = &cusparsestruct->deviceMat; 11323fa6b06aSMark Adams Mat_SeqAIJCUSPARSEMultStruct *matstruct = (Mat_SeqAIJCUSPARSEMultStruct*)cusparsestruct->mat; 11333fa6b06aSMark Adams if (cusparsestruct->format==MAT_CUSPARSE_CSR) { 11343fa6b06aSMark Adams matrixA = (CsrMatrix*)matstruct->mat; 11353fa6b06aSMark Adams bi = bj = NULL; ba = NULL; 11366b78a27eSPierre Jolivet } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Device Mat needs MAT_CUSPARSE_CSR"); 11373fa6b06aSMark Adams } else { 11383fa6b06aSMark Adams Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 11393fa6b06aSMark Adams Mat_MPIAIJCUSPARSE *spptr = (Mat_MPIAIJCUSPARSE*)aij->spptr; 11403fa6b06aSMark Adams p_d_mat = &spptr->deviceMat; 11413fa6b06aSMark Adams Mat_SeqAIJCUSPARSE *cusparsestructA = (Mat_SeqAIJCUSPARSE*)aij->A->spptr; 11423fa6b06aSMark Adams Mat_SeqAIJCUSPARSE *cusparsestructB = (Mat_SeqAIJCUSPARSE*)aij->B->spptr; 11433fa6b06aSMark Adams Mat_SeqAIJCUSPARSEMultStruct *matstructA = (Mat_SeqAIJCUSPARSEMultStruct*)cusparsestructA->mat; 11443fa6b06aSMark Adams Mat_SeqAIJCUSPARSEMultStruct *matstructB = (Mat_SeqAIJCUSPARSEMultStruct*)cusparsestructB->mat; 11453fa6b06aSMark Adams if (cusparsestructA->format==MAT_CUSPARSE_CSR) { 11463fa6b06aSMark Adams if (cusparsestructB->format!=MAT_CUSPARSE_CSR) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Device Mat B needs MAT_CUSPARSE_CSR"); 11473fa6b06aSMark Adams matrixA = (CsrMatrix*)matstructA->mat; 11483fa6b06aSMark Adams matrixB = (CsrMatrix*)matstructB->mat; 11493fa6b06aSMark Adams bi = thrust::raw_pointer_cast(matrixB->row_offsets->data()); 11503fa6b06aSMark Adams bj = thrust::raw_pointer_cast(matrixB->column_indices->data()); 11513fa6b06aSMark Adams ba = thrust::raw_pointer_cast(matrixB->values->data()); 11526b78a27eSPierre Jolivet } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Device Mat A needs MAT_CUSPARSE_CSR"); 11533fa6b06aSMark Adams } 11543fa6b06aSMark Adams ai = thrust::raw_pointer_cast(matrixA->row_offsets->data()); 11553fa6b06aSMark Adams aj = thrust::raw_pointer_cast(matrixA->column_indices->data()); 11563fa6b06aSMark Adams aa = thrust::raw_pointer_cast(matrixA->values->data()); 11573fa6b06aSMark Adams } else { 11583fa6b06aSMark Adams *B = NULL; 11593fa6b06aSMark Adams PetscFunctionReturn(0); 11603fa6b06aSMark Adams } 11613fa6b06aSMark Adams // act like MatSetValues because not called on host 11623fa6b06aSMark Adams if (A->assembled) { 11633fa6b06aSMark Adams if (A->was_assembled) { 11643fa6b06aSMark Adams ierr = PetscInfo(A,"Assemble more than once already\n");CHKERRQ(ierr); 11653fa6b06aSMark Adams } 11663fa6b06aSMark Adams A->was_assembled = PETSC_TRUE; // this is done (lazy) in MatAssemble but we are not calling it anymore - done in AIJ AssemblyEnd, need here? 11673fa6b06aSMark Adams } else { 11683fa6b06aSMark Adams SETERRQ(comm,PETSC_ERR_SUP,"Need assemble matrix"); 11693fa6b06aSMark Adams } 11703fa6b06aSMark Adams if (!*p_d_mat) { 11713fa6b06aSMark Adams cudaError_t err; 11723fa6b06aSMark Adams PetscSplitCSRDataStructure *d_mat, h_mat; 11733fa6b06aSMark Adams Mat_SeqAIJ *jaca; 11743fa6b06aSMark Adams PetscInt n = A->rmap->n, nnz; 11753fa6b06aSMark Adams // create and copy 11763fa6b06aSMark Adams ierr = PetscInfo(A,"Create device matrix\n");CHKERRQ(ierr); 11773fa6b06aSMark Adams err = cudaMalloc((void **)&d_mat, sizeof(PetscSplitCSRDataStructure));CHKERRCUDA(err); 11783fa6b06aSMark Adams err = cudaMemset( d_mat, 0, sizeof(PetscSplitCSRDataStructure));CHKERRCUDA(err); 11793fa6b06aSMark Adams *B = *p_d_mat = d_mat; // return it, set it in Mat, and set it up 11803fa6b06aSMark Adams if (size == 1) { 11813fa6b06aSMark Adams jaca = (Mat_SeqAIJ*)A->data; 11823fa6b06aSMark Adams h_mat.rstart = 0; h_mat.rend = A->rmap->n; 11833fa6b06aSMark Adams h_mat.cstart = 0; h_mat.cend = A->cmap->n; 11843fa6b06aSMark Adams h_mat.offdiag.i = h_mat.offdiag.j = NULL; 11853fa6b06aSMark Adams h_mat.offdiag.a = NULL; 11863fa6b06aSMark Adams } else { 11873fa6b06aSMark Adams Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 11883fa6b06aSMark Adams Mat_SeqAIJ *jacb; 11893fa6b06aSMark Adams jaca = (Mat_SeqAIJ*)aij->A->data; 11903fa6b06aSMark Adams jacb = (Mat_SeqAIJ*)aij->B->data; 11913fa6b06aSMark Adams if (!aij->garray) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"MPIAIJ Matrix was assembled but is missing garray"); 11923fa6b06aSMark Adams if (aij->B->rmap->n != aij->A->rmap->n) SETERRQ(comm,PETSC_ERR_SUP,"Only support aij->B->rmap->n == aij->A->rmap->n"); 11933fa6b06aSMark Adams // create colmap - this is ussually done (lazy) in MatSetValues 11943fa6b06aSMark Adams aij->donotstash = PETSC_TRUE; 11953fa6b06aSMark Adams aij->A->nooffprocentries = aij->B->nooffprocentries = A->nooffprocentries = PETSC_TRUE; 11963fa6b06aSMark Adams jaca->nonew = jacb->nonew = PETSC_TRUE; // no more dissassembly 11973fa6b06aSMark Adams ierr = PetscCalloc1(A->cmap->N+1,&aij->colmap);CHKERRQ(ierr); 11983fa6b06aSMark Adams aij->colmap[A->cmap->N] = -9; 11993fa6b06aSMark Adams ierr = PetscLogObjectMemory((PetscObject)A,(A->cmap->N+1)*sizeof(PetscInt));CHKERRQ(ierr); 12003fa6b06aSMark Adams { 12013fa6b06aSMark Adams PetscInt ii; 12023fa6b06aSMark Adams for (ii=0; ii<aij->B->cmap->n; ii++) aij->colmap[aij->garray[ii]] = ii+1; 12033fa6b06aSMark Adams } 12043fa6b06aSMark Adams if (aij->colmap[A->cmap->N] != -9) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"aij->colmap[A->cmap->N] != -9"); 12053fa6b06aSMark Adams // allocate B copy data 12063fa6b06aSMark Adams h_mat.rstart = A->rmap->rstart; h_mat.rend = A->rmap->rend; 12073fa6b06aSMark Adams h_mat.cstart = A->cmap->rstart; h_mat.cend = A->cmap->rend; 12083fa6b06aSMark Adams nnz = jacb->i[n]; 12093fa6b06aSMark Adams 12103fa6b06aSMark Adams if (jacb->compressedrow.use) { 12113fa6b06aSMark Adams err = cudaMalloc((void **)&h_mat.offdiag.i, (n+1)*sizeof(int));CHKERRCUDA(err); // kernel input 12123fa6b06aSMark Adams err = cudaMemcpy( h_mat.offdiag.i, jacb->i, (n+1)*sizeof(int), cudaMemcpyHostToDevice);CHKERRCUDA(err); 12136b78a27eSPierre Jolivet } else h_mat.offdiag.i = bi; 12143fa6b06aSMark Adams h_mat.offdiag.j = bj; 12153fa6b06aSMark Adams h_mat.offdiag.a = ba; 12163fa6b06aSMark Adams 12173fa6b06aSMark Adams err = cudaMalloc((void **)&h_mat.colmap, (A->cmap->N+1)*sizeof(PetscInt));CHKERRCUDA(err); // kernel output 12183fa6b06aSMark Adams err = cudaMemcpy( h_mat.colmap, aij->colmap, (A->cmap->N+1)*sizeof(PetscInt), cudaMemcpyHostToDevice);CHKERRCUDA(err); 12193fa6b06aSMark Adams h_mat.offdiag.ignorezeroentries = jacb->ignorezeroentries; 12203fa6b06aSMark Adams h_mat.offdiag.n = n; 12213fa6b06aSMark Adams } 12223fa6b06aSMark Adams // allocate A copy data 12233fa6b06aSMark Adams nnz = jaca->i[n]; 12243fa6b06aSMark Adams h_mat.diag.n = n; 12253fa6b06aSMark Adams h_mat.diag.ignorezeroentries = jaca->ignorezeroentries; 1226ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&h_mat.rank);CHKERRMPI(ierr); 12273fa6b06aSMark Adams if (jaca->compressedrow.use) { 12283fa6b06aSMark Adams err = cudaMalloc((void **)&h_mat.diag.i, (n+1)*sizeof(int));CHKERRCUDA(err); // kernel input 12293fa6b06aSMark Adams err = cudaMemcpy( h_mat.diag.i, jaca->i, (n+1)*sizeof(int), cudaMemcpyHostToDevice);CHKERRCUDA(err); 12303fa6b06aSMark Adams } else { 12313fa6b06aSMark Adams h_mat.diag.i = ai; 12323fa6b06aSMark Adams } 12333fa6b06aSMark Adams h_mat.diag.j = aj; 12343fa6b06aSMark Adams h_mat.diag.a = aa; 12353fa6b06aSMark Adams // copy pointers and metdata to device 12363fa6b06aSMark Adams err = cudaMemcpy( d_mat, &h_mat, sizeof(PetscSplitCSRDataStructure), cudaMemcpyHostToDevice);CHKERRCUDA(err); 12373fa6b06aSMark Adams ierr = PetscInfo2(A,"Create device Mat n=%D nnz=%D\n",h_mat.diag.n, nnz);CHKERRQ(ierr); 12383fa6b06aSMark Adams } else { 12393fa6b06aSMark Adams *B = *p_d_mat; 12403fa6b06aSMark Adams } 12413fa6b06aSMark Adams A->assembled = PETSC_FALSE; // ready to write with matsetvalues - this done (lazy) in normal MatSetValues 12423fa6b06aSMark Adams PetscFunctionReturn(0); 12439db3cbf9SStefano Zampini #endif 12443fa6b06aSMark Adams } 1245