xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision 1e2d28a06e58cc964527ee46c0ab5cb0bd9e6621)
12499ec78SHong Zhang /*
22499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
32499ec78SHong Zhang           C = A * B
42499ec78SHong Zhang */
5c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
6c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
7c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
8c6db04a5SJed Brown #include <petscbt.h>
9c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
10af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
1197929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
121634b032SHong Zhang 
135e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
144222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat);
155e5acdf2Sstefano_zampini #endif
165e5acdf2Sstefano_zampini 
17d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C)
18d71ae5a4SJacob Faibussowitsch {
198a9c020eSBarry Smith   Mat_Product *product = C->product;
208a9c020eSBarry Smith   Mat          B       = product->B;
218a9c020eSBarry Smith 
228a9c020eSBarry Smith   PetscFunctionBegin;
238a9c020eSBarry Smith   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &product->B));
248a9c020eSBarry Smith   PetscCall(MatDestroy(&B));
258a9c020eSBarry Smith   PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C));
263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
278a9c020eSBarry Smith }
288a9c020eSBarry Smith 
29d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C)
30d71ae5a4SJacob Faibussowitsch {
314222ddf1SHong Zhang   Mat_Product        *product = C->product;
324222ddf1SHong Zhang   Mat                 A = product->A, B = product->B;
334222ddf1SHong Zhang   MatProductAlgorithm alg  = product->alg;
344222ddf1SHong Zhang   PetscReal           fill = product->fill;
355e68f438SHong Zhang   PetscBool           flg;
362499ec78SHong Zhang 
372499ec78SHong Zhang   PetscFunctionBegin;
384222ddf1SHong Zhang   /* scalable */
399566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "scalable", &flg));
404222ddf1SHong Zhang   if (flg) {
419566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
430fc8cf34SHong Zhang   }
447d0a89b7SHong Zhang 
454222ddf1SHong Zhang   /* nonscalable */
469566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "nonscalable", &flg));
474222ddf1SHong Zhang   if (flg) {
489566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
493ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
504222ddf1SHong Zhang   }
514222ddf1SHong Zhang 
524222ddf1SHong Zhang   /* seqmpi */
539566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "seqmpi", &flg));
544222ddf1SHong Zhang   if (flg) {
559566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A, B, fill, C));
563ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
574222ddf1SHong Zhang   }
584222ddf1SHong Zhang 
594e84afc0SStefano Zampini   /* backend general code */
609566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "backend", &flg));
614e84afc0SStefano Zampini   if (flg) {
629566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
633ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
644e84afc0SStefano Zampini   }
654e84afc0SStefano Zampini 
664222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
679566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "hypre", &flg));
684222ddf1SHong Zhang   if (flg) {
699566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C));
703ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
714222ddf1SHong Zhang   }
724222ddf1SHong Zhang #endif
734222ddf1SHong Zhang   SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Mat Product Algorithm is not supported");
742499ec78SHong Zhang }
752499ec78SHong Zhang 
762a8381b2SBarry Smith PetscErrorCode MatProductCtxDestroy_MPIAIJ_MatMatMult(PetscCtxRt data)
77d71ae5a4SJacob Faibussowitsch {
78cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap = *(MatProductCtx_APMPI **)data;
79598bc09dSHong Zhang 
80598bc09dSHong Zhang   PetscFunctionBegin;
819566063dSJacob Faibussowitsch   PetscCall(PetscFree2(ptap->startsj_s, ptap->startsj_r));
829566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->bufa));
839566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_loc));
849566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_oth));
859566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->Pt));
869566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->api));
879566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apj));
889566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apa));
899566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap));
903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91598bc09dSHong Zhang }
92598bc09dSHong Zhang 
93d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, Mat C)
94d71ae5a4SJacob Faibussowitsch {
954ae0847bSHong Zhang   Mat_MPIAIJ          *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
96f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data;
97f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data;
9899aa8e07SJunchao Zhang   PetscScalar         *cda, *coa;
99598bc09dSHong Zhang   Mat_SeqAIJ          *p_loc, *p_oth;
1009ce11a7cSHong Zhang   PetscScalar         *apa, *ca;
101c12557a1SHong Zhang   PetscInt             cm = C->rmap->n;
102cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
103c12557a1SHong Zhang   PetscInt            *api, *apj, *apJ, i, k;
10429825010SHong Zhang   PetscInt             cstart = C->cmap->rstart;
105598bc09dSHong Zhang   PetscInt             cdnz, conz, k0, k1;
10699aa8e07SJunchao Zhang   const PetscScalar   *dummy1, *dummy2, *dummy3, *dummy4;
1079467f45fSHong Zhang   MPI_Comm             comm;
1089467f45fSHong Zhang   PetscMPIInt          size;
109598bc09dSHong Zhang 
110598bc09dSHong Zhang   PetscFunctionBegin;
1116718818eSStefano Zampini   MatCheckProduct(C, 3);
112cc1eb50dSBarry Smith   ptap = (MatProductCtx_APMPI *)C->product->data;
11328b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
1149566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1159566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
116aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
11780da8df7SHong Zhang 
11865e4b4d4SStefano Zampini   /* flag CPU mask for C */
11965e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
12065e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
12165e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
12265e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
12365e4b4d4SStefano Zampini #endif
12465e4b4d4SStefano Zampini 
125a1a4e84aSHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
126a1a4e84aSHong Zhang   /* update numerical values of P_oth and P_loc */
1279566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1289566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
129598bc09dSHong Zhang 
130598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
131598bc09dSHong Zhang   /* get data from symbolic products */
132f4f49eeaSPierre Jolivet   p_loc = (Mat_SeqAIJ *)ptap->P_loc->data;
133c12557a1SHong Zhang   p_oth = NULL;
134f4f49eeaSPierre Jolivet   if (size > 1) p_oth = (Mat_SeqAIJ *)ptap->P_oth->data;
135598bc09dSHong Zhang 
136598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
137598bc09dSHong Zhang   apa = ptap->apa;
138598bc09dSHong Zhang 
13929825010SHong Zhang   api = ptap->api;
14029825010SHong Zhang   apj = ptap->apj;
141ce496241SStefano Zampini   /* trigger copy to CPU */
14299aa8e07SJunchao Zhang   PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy1));
14399aa8e07SJunchao Zhang   PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy2));
14499aa8e07SJunchao Zhang   PetscCall(MatSeqAIJGetArrayRead(ptap->P_loc, &dummy3));
14599aa8e07SJunchao Zhang   if (ptap->P_oth) PetscCall(MatSeqAIJGetArrayRead(ptap->P_oth, &dummy4));
14699aa8e07SJunchao Zhang   PetscCall(MatSeqAIJGetArrayWrite(c->A, &cda));
14799aa8e07SJunchao Zhang   PetscCall(MatSeqAIJGetArrayWrite(c->B, &coa));
148598bc09dSHong Zhang   for (i = 0; i < cm; i++) {
149c12557a1SHong Zhang     /* compute apa = A[i,:]*P */
150e497d3c8SHong Zhang     AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa);
151598bc09dSHong Zhang 
152598bc09dSHong Zhang     /* set values in C */
153216f1e5cSPierre Jolivet     apJ  = PetscSafePointerPlusOffset(apj, api[i]);
154598bc09dSHong Zhang     cdnz = cd->i[i + 1] - cd->i[i];
155598bc09dSHong Zhang     conz = co->i[i + 1] - co->i[i];
156598bc09dSHong Zhang 
157910cf402Sprj-     /* 1st off-diagonal part of C */
1588e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
159598bc09dSHong Zhang     k  = 0;
160598bc09dSHong Zhang     for (k0 = 0; k0 < conz; k0++) {
161598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
162598bc09dSHong Zhang       ca[k0]        = apa[apJ[k]];
1635cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
164598bc09dSHong Zhang     }
165598bc09dSHong Zhang 
166598bc09dSHong Zhang     /* diagonal part of C */
1678e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(cda, cd->i[i]);
168598bc09dSHong Zhang     for (k1 = 0; k1 < cdnz; k1++) {
169598bc09dSHong Zhang       ca[k1]        = apa[apJ[k]];
1705cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
171598bc09dSHong Zhang     }
172598bc09dSHong Zhang 
173910cf402Sprj-     /* 2nd off-diagonal part of C */
1748e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
175598bc09dSHong Zhang     for (; k0 < conz; k0++) {
176598bc09dSHong Zhang       ca[k0]        = apa[apJ[k]];
1775cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
178598bc09dSHong Zhang     }
179598bc09dSHong Zhang   }
18099aa8e07SJunchao Zhang   PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy1));
18199aa8e07SJunchao Zhang   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy2));
18299aa8e07SJunchao Zhang   PetscCall(MatSeqAIJRestoreArrayRead(ptap->P_loc, &dummy3));
18399aa8e07SJunchao Zhang   if (ptap->P_oth) PetscCall(MatSeqAIJRestoreArrayRead(ptap->P_oth, &dummy4));
18499aa8e07SJunchao Zhang   PetscCall(MatSeqAIJRestoreArrayWrite(c->A, &cda));
18599aa8e07SJunchao Zhang   PetscCall(MatSeqAIJRestoreArrayWrite(c->B, &coa));
18699aa8e07SJunchao Zhang 
1879566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
1889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
1893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
190598bc09dSHong Zhang }
191598bc09dSHong Zhang 
192d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, PetscReal fill, Mat C)
193d71ae5a4SJacob Faibussowitsch {
194ce94432eSBarry Smith   MPI_Comm             comm;
1959467f45fSHong Zhang   PetscMPIInt          size;
196cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
1970298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
1986718818eSStefano Zampini   Mat_MPIAIJ          *a  = (Mat_MPIAIJ *)A->data;
199f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth;
2007dbaa2c6Sandi selinger   PetscInt            *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
2014ae0847bSHong Zhang   PetscInt            *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
202d14fa243SHong Zhang   PetscInt            *lnk, i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi;
2035cab4f04SHong Zhang   PetscInt             am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n;
204598bc09dSHong Zhang   PetscBT              lnkbt;
205bfcd1a73SHong Zhang   PetscReal            afill;
206b92f168fSBarry Smith   MatType              mtype;
207598bc09dSHong Zhang 
208598bc09dSHong Zhang   PetscFunctionBegin;
2096718818eSStefano Zampini   MatCheckProduct(C, 4);
21028b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
2119566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
2129566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2139467f45fSHong Zhang 
214cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
2159566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
216598bc09dSHong Zhang 
217598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
2189566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
21919f0e57aSHong Zhang 
220598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
2219566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
222598bc09dSHong Zhang 
223f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
2249371c9d4SSatish Balay   pi_loc = p_loc->i;
2259371c9d4SSatish Balay   pj_loc = p_loc->j;
2269467f45fSHong Zhang   if (size > 1) {
227f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
2289371c9d4SSatish Balay     pi_oth = p_oth->i;
2299371c9d4SSatish Balay     pj_oth = p_oth->j;
23020e3dc75SHong Zhang   } else {
23120e3dc75SHong Zhang     p_oth  = NULL;
2329371c9d4SSatish Balay     pi_oth = NULL;
2339371c9d4SSatish Balay     pj_oth = NULL;
2349467f45fSHong Zhang   }
235598bc09dSHong Zhang 
236598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
23784648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &api));
238a1a4e84aSHong Zhang   ptap->api = api;
239598bc09dSHong Zhang   api[0]    = 0;
240598bc09dSHong Zhang 
2415cab4f04SHong Zhang   /* create and initialize a linked list */
2429566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
243598bc09dSHong Zhang 
244bfcd1a73SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
2459566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
246598bc09dSHong Zhang   current_space = free_space;
247598bc09dSHong Zhang 
248d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
249598bc09dSHong Zhang   for (i = 0; i < am; i++) {
250598bc09dSHong Zhang     /* diagonal portion of A */
251598bc09dSHong Zhang     nzi = adi[i + 1] - adi[i];
252598bc09dSHong Zhang     for (j = 0; j < nzi; j++) {
253598bc09dSHong Zhang       row  = *adj++;
254598bc09dSHong Zhang       pnz  = pi_loc[row + 1] - pi_loc[row];
255598bc09dSHong Zhang       Jptr = pj_loc + pi_loc[row];
256598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
2579566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
258598bc09dSHong Zhang     }
259598bc09dSHong Zhang     /* off-diagonal portion of A */
260598bc09dSHong Zhang     nzi = aoi[i + 1] - aoi[i];
261598bc09dSHong Zhang     for (j = 0; j < nzi; j++) {
262598bc09dSHong Zhang       row  = *aoj++;
263598bc09dSHong Zhang       pnz  = pi_oth[row + 1] - pi_oth[row];
264598bc09dSHong Zhang       Jptr = pj_oth + pi_oth[row];
2659566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
266598bc09dSHong Zhang     }
2678c78258cSHong Zhang     /* add possible missing diagonal entry */
2688c78258cSHong Zhang     if (C->force_diagonals) {
2698c78258cSHong Zhang       j = i + rstart; /* column index */
2709566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1, &j, lnk, lnkbt));
2718c78258cSHong Zhang     }
272598bc09dSHong Zhang 
273d14fa243SHong Zhang     apnz       = lnk[0];
274598bc09dSHong Zhang     api[i + 1] = api[i] + apnz;
275598bc09dSHong Zhang 
276598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
277598bc09dSHong Zhang     if (current_space->local_remaining < apnz) {
2789566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), &current_space));
279598bc09dSHong Zhang       nspacedouble++;
280598bc09dSHong Zhang     }
281598bc09dSHong Zhang 
282598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
2839566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN, apnz, current_space->array, lnk, lnkbt));
2849566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
2852205254eSKarl Rupp 
286598bc09dSHong Zhang     current_space->array += apnz;
287598bc09dSHong Zhang     current_space->local_used += apnz;
288598bc09dSHong Zhang     current_space->local_remaining -= apnz;
289598bc09dSHong Zhang   }
290598bc09dSHong Zhang 
291598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
292598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
29384648c2dSPierre Jolivet   PetscCall(PetscMalloc1(api[am], &ptap->apj));
294a1a4e84aSHong Zhang   apj = ptap->apj;
2959566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
2969566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
297598bc09dSHong Zhang 
298f84c536bSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
2999566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN, &ptap->apa));
300f84c536bSHong Zhang 
3014222ddf1SHong Zhang   /* set and assemble symbolic parallel matrix C */
3029566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
3039566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
304a2f3521dSMark F. Adams 
3059566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
3069566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
3079566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
308d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
30917f75172Sandi selinger 
3109566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
311799b351eSPierre Jolivet   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3149566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
315598bc09dSHong Zhang 
3164222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
3174222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
318598bc09dSHong Zhang 
3194222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
3206718818eSStefano Zampini   C->product->data    = ptap;
321cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult;
322598bc09dSHong Zhang 
323bfcd1a73SHong Zhang   /* set MatInfo */
324118727c9SMark F. Adams   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
325bfcd1a73SHong Zhang   if (afill < 1.0) afill = 1.0;
3264222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
3274222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
3284222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
329bfcd1a73SHong Zhang 
330bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
331bfcd1a73SHong Zhang   if (api[am]) {
3329566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
3339566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
334bfcd1a73SHong Zhang   } else {
3359566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
336bfcd1a73SHong Zhang   }
337bfcd1a73SHong Zhang #endif
3383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
339598bc09dSHong Zhang }
340598bc09dSHong Zhang 
3416718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat);
3426718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat, Mat, Mat);
3436718818eSStefano Zampini 
344d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C)
345d71ae5a4SJacob Faibussowitsch {
3464222ddf1SHong Zhang   Mat_Product *product = C->product;
3474222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
3489123193aSHong Zhang 
3499123193aSHong Zhang   PetscFunctionBegin;
3504222ddf1SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend)
35198921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
3524222ddf1SHong Zhang 
3534222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense;
3544222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
3553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3569123193aSHong Zhang }
3572ef1f0ffSBarry Smith 
358d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C)
359d71ae5a4SJacob Faibussowitsch {
3604222ddf1SHong Zhang   Mat_Product *product = C->product;
3614222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
3624222ddf1SHong Zhang 
3634222ddf1SHong Zhang   PetscFunctionBegin;
3644222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
36598921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
3664222ddf1SHong Zhang 
3674222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense;
3684222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
3693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3704222ddf1SHong Zhang }
3714222ddf1SHong Zhang 
372d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C)
373d71ae5a4SJacob Faibussowitsch {
3744222ddf1SHong Zhang   Mat_Product *product = C->product;
3754222ddf1SHong Zhang 
3764222ddf1SHong Zhang   PetscFunctionBegin;
3774222ddf1SHong Zhang   switch (product->type) {
378d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
379d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C));
380d71ae5a4SJacob Faibussowitsch     break;
381d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
382d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C));
383d71ae5a4SJacob Faibussowitsch     break;
384d71ae5a4SJacob Faibussowitsch   default:
385d71ae5a4SJacob Faibussowitsch     break;
3864222ddf1SHong Zhang   }
3873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3884222ddf1SHong Zhang }
3899123193aSHong Zhang 
3904324174eSBarry Smith typedef struct {
3915ea7661aSPierre Jolivet   Mat           workB, workB1;
3924324174eSBarry Smith   MPI_Request  *rwaits, *swaits;
39387753ddeSHong Zhang   PetscInt      nsends, nrecvs;
39487753ddeSHong Zhang   MPI_Datatype *stype, *rtype;
3956718818eSStefano Zampini   PetscInt      blda;
3964324174eSBarry Smith } MPIAIJ_MPIDense;
3974324174eSBarry Smith 
3982a8381b2SBarry Smith static PetscErrorCode MatMPIAIJ_MPIDenseDestroy(PetscCtxRt ctx)
399d71ae5a4SJacob Faibussowitsch {
400cc1eb50dSBarry Smith   MPIAIJ_MPIDense *contents = *(MPIAIJ_MPIDense **)ctx;
40187753ddeSHong Zhang   PetscInt         i;
4024324174eSBarry Smith 
4034324174eSBarry Smith   PetscFunctionBegin;
4049566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB));
4059566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB1));
40648a46eb9SPierre Jolivet   for (i = 0; i < contents->nsends; i++) PetscCallMPI(MPI_Type_free(&contents->stype[i]));
40748a46eb9SPierre Jolivet   for (i = 0; i < contents->nrecvs; i++) PetscCallMPI(MPI_Type_free(&contents->rtype[i]));
4089566063dSJacob Faibussowitsch   PetscCall(PetscFree4(contents->stype, contents->rtype, contents->rwaits, contents->swaits));
4099566063dSJacob Faibussowitsch   PetscCall(PetscFree(contents));
4103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4114324174eSBarry Smith }
4124324174eSBarry Smith 
413d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A, Mat B, PetscReal fill, Mat C)
414d71ae5a4SJacob Faibussowitsch {
415f32d5d43SBarry Smith   Mat_MPIAIJ      *aij = (Mat_MPIAIJ *)A->data;
4166497c311SBarry Smith   PetscInt         nz  = aij->B->cmap->n, blda, m, M, n, N;
4174324174eSBarry Smith   MPIAIJ_MPIDense *contents;
4184324174eSBarry Smith   VecScatter       ctx = aij->Mvctx;
4196497c311SBarry Smith   PetscInt         Am = A->rmap->n, Bm = B->rmap->n, BN = B->cmap->N, Bbn, Bbn1, bs, numBb;
42087753ddeSHong Zhang   MPI_Comm         comm;
42187753ddeSHong Zhang   MPI_Datatype     type1, *stype, *rtype;
42287753ddeSHong Zhang   const PetscInt  *sindices, *sstarts, *rstarts;
4236497c311SBarry Smith   PetscMPIInt     *disp, nsends, nrecvs, nrows_to, nrows_from;
4246718818eSStefano Zampini   PetscBool        cisdense;
4259123193aSHong Zhang 
4269123193aSHong Zhang   PetscFunctionBegin;
4276718818eSStefano Zampini   MatCheckProduct(C, 4);
42828b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
4299566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
4309566063dSJacob Faibussowitsch   PetscCall(PetscObjectBaseTypeCompare((PetscObject)C, MATMPIDENSE, &cisdense));
43148a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)B)->type_name));
4329566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(C, &m, &n));
4339566063dSJacob Faibussowitsch   PetscCall(MatGetSize(C, &M, &N));
43448a46eb9SPierre Jolivet   if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) PetscCall(MatSetSizes(C, Am, B->cmap->n, A->rmap->N, BN));
4359566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
4369566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
4379566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &blda));
4389566063dSJacob Faibussowitsch   PetscCall(PetscNew(&contents));
4394324174eSBarry Smith 
4409566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
4419566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
44287753ddeSHong Zhang 
44387753ddeSHong Zhang   /* Create column block of B and C for memory scalability when BN is too large */
44487753ddeSHong Zhang   /* Estimate Bbn, column size of Bb */
44587753ddeSHong Zhang   if (nz) {
44687753ddeSHong Zhang     Bbn1 = 2 * Am * BN / nz;
447da7cbbe7SHong Zhang     if (!Bbn1) Bbn1 = 1;
44887753ddeSHong Zhang   } else Bbn1 = BN;
44987753ddeSHong Zhang 
45058b7e2c1SStefano Zampini   bs   = B->cmap->bs;
45187753ddeSHong Zhang   Bbn1 = Bbn1 / bs * bs; /* Bbn1 is a multiple of bs */
45287753ddeSHong Zhang   if (Bbn1 > BN) Bbn1 = BN;
453462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&Bbn1, &Bbn, 1, MPIU_INT, MPI_MAX, comm));
45487753ddeSHong Zhang 
45587753ddeSHong Zhang   /* Enable runtime option for Bbn */
456*1e2d28a0SPierre Jolivet   PetscOptionsBegin(comm, ((PetscObject)C)->prefix, "MatProduct", "Mat");
457*1e2d28a0SPierre Jolivet   PetscCall(PetscOptionsDeprecated("-matmatmult_Bbn", "-matproduct_batch_size", "3.25", NULL));
458*1e2d28a0SPierre Jolivet   PetscCall(PetscOptionsInt("-matproduct_batch_size", "Number of columns in Bb", "MatProduct", Bbn, &Bbn, NULL));
459d0609cedSBarry Smith   PetscOptionsEnd();
4606718818eSStefano Zampini   Bbn = PetscMin(Bbn, BN);
46187753ddeSHong Zhang 
4626718818eSStefano Zampini   if (Bbn > 0 && Bbn < BN) {
4635ea7661aSPierre Jolivet     numBb = BN / Bbn;
4645ea7661aSPierre Jolivet     Bbn1  = BN - numBb * Bbn;
4655ea7661aSPierre Jolivet   } else numBb = 0;
46687753ddeSHong Zhang 
4675ea7661aSPierre Jolivet   if (numBb) {
4689566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n", BN, Bbn, numBb));
4695ea7661aSPierre Jolivet     if (Bbn1) { /* Create workB1 for the remaining columns */
4709566063dSJacob Faibussowitsch       PetscCall(PetscInfo(C, "use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n", BN, Bbn1));
47187753ddeSHong Zhang       /* Create work matrix used to store off processor rows of B needed for local product */
4729566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn1, NULL, &contents->workB1));
4735ea7661aSPierre Jolivet     } else contents->workB1 = NULL;
47487753ddeSHong Zhang   }
47587753ddeSHong Zhang 
47687753ddeSHong Zhang   /* Create work matrix used to store off processor rows of B needed for local product */
4779566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn, NULL, &contents->workB));
47887753ddeSHong Zhang 
47987753ddeSHong Zhang   /* Use MPI derived data type to reduce memory required by the send/recv buffers */
4809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(nsends, &stype, nrecvs, &rtype, nrecvs, &contents->rwaits, nsends, &contents->swaits));
48187753ddeSHong Zhang   contents->stype  = stype;
48287753ddeSHong Zhang   contents->nsends = nsends;
48387753ddeSHong Zhang 
48487753ddeSHong Zhang   contents->rtype  = rtype;
48587753ddeSHong Zhang   contents->nrecvs = nrecvs;
4866718818eSStefano Zampini   contents->blda   = blda;
48787753ddeSHong Zhang 
4889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bm + 1, &disp));
4896497c311SBarry Smith   for (PetscMPIInt i = 0; i < nsends; i++) {
4906497c311SBarry Smith     PetscCall(PetscMPIIntCast(sstarts[i + 1] - sstarts[i], &nrows_to));
4916497c311SBarry Smith     for (PetscInt j = 0; j < nrows_to; j++) PetscCall(PetscMPIIntCast(sindices[sstarts[i] + j], &disp[j])); /* rowB to be sent */
4929566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(nrows_to, 1, disp, MPIU_SCALAR, &type1));
4939566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1, 0, blda * sizeof(PetscScalar), &stype[i]));
4949566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&stype[i]));
4959566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
49687753ddeSHong Zhang   }
49787753ddeSHong Zhang 
4986497c311SBarry Smith   for (PetscMPIInt i = 0; i < nrecvs; i++) {
49987753ddeSHong Zhang     /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */
5006497c311SBarry Smith     PetscCall(PetscMPIIntCast(rstarts[i + 1] - rstarts[i], &nrows_from));
50187753ddeSHong Zhang     disp[0] = 0;
5029566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(1, nrows_from, disp, MPIU_SCALAR, &type1));
5039566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1, 0, nz * sizeof(PetscScalar), &rtype[i]));
5049566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&rtype[i]));
5059566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
50687753ddeSHong Zhang   }
50787753ddeSHong Zhang 
5089566063dSJacob Faibussowitsch   PetscCall(PetscFree(disp));
5099566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
5109566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
5119566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
5129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
5139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
5146718818eSStefano Zampini 
5156718818eSStefano Zampini   C->product->data       = contents;
5166718818eSStefano Zampini   C->product->destroy    = MatMPIAIJ_MPIDenseDestroy;
5174222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense;
5183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5199123193aSHong Zhang }
5209123193aSHong Zhang 
52193aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat, Mat, Mat, const PetscBool);
5229612af27SStefano Zampini 
523f32d5d43SBarry Smith /*
5242636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
5252636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
52687753ddeSHong Zhang 
5279612af27SStefano Zampini     Input: If Bbidx = 0, uses B = Bb, else B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense()
528f32d5d43SBarry Smith */
5299612af27SStefano Zampini 
53066976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseScatter(Mat A, Mat B, PetscInt Bbidx, Mat C, Mat *outworkB)
531d71ae5a4SJacob Faibussowitsch {
532f32d5d43SBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
5331683a169SBarry Smith   const PetscScalar *b;
53487753ddeSHong Zhang   PetscScalar       *rvalues;
535f32d5d43SBarry Smith   VecScatter         ctx = aij->Mvctx;
53687753ddeSHong Zhang   const PetscInt    *sindices, *sstarts, *rstarts;
5373515ee7fSJunchao Zhang   const PetscMPIInt *sprocs, *rprocs;
5386497c311SBarry Smith   PetscMPIInt        nsends, nrecvs;
539f32d5d43SBarry Smith   MPI_Request       *swaits, *rwaits;
540ce94432eSBarry Smith   MPI_Comm           comm;
5416497c311SBarry Smith   PetscMPIInt        tag = ((PetscObject)ctx)->tag, ncols, nrows, nsends_mpi, nrecvs_mpi;
5424324174eSBarry Smith   MPIAIJ_MPIDense   *contents;
5434324174eSBarry Smith   Mat                workB;
54487753ddeSHong Zhang   MPI_Datatype      *stype, *rtype;
5456718818eSStefano Zampini   PetscInt           blda;
546f32d5d43SBarry Smith 
547f32d5d43SBarry Smith   PetscFunctionBegin;
5486718818eSStefano Zampini   MatCheckProduct(C, 4);
54928b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5506497c311SBarry Smith   PetscCall(PetscMPIIntCast(B->cmap->N, &ncols));
5516497c311SBarry Smith   PetscCall(PetscMPIIntCast(aij->B->cmap->n, &nrows));
5526718818eSStefano Zampini   contents = (MPIAIJ_MPIDense *)C->product->data;
5539566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL /*bs*/));
5549566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL /*bs*/));
5559566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends, &nsends_mpi));
5569566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nrecvs, &nrecvs_mpi));
557b45e3bf4SStefano Zampini   if (Bbidx == 0) workB = *outworkB = contents->workB;
558b45e3bf4SStefano Zampini   else workB = *outworkB = contents->workB1;
55908401ef6SPierre Jolivet   PetscCheck(nrows == workB->rmap->n, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d", workB->cmap->n, nrows);
5603515ee7fSJunchao Zhang   swaits = contents->swaits;
5613515ee7fSJunchao Zhang   rwaits = contents->rwaits;
562f32d5d43SBarry Smith 
5639566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B, &b));
5649566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &blda));
56508401ef6SPierre Jolivet   PetscCheck(blda == contents->blda, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT, blda, contents->blda);
5669566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(workB, &rvalues));
567f32d5d43SBarry Smith 
56887753ddeSHong Zhang   /* Post recv, use MPI derived data type to save memory */
5699566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
57087753ddeSHong Zhang   rtype = contents->rtype;
5716497c311SBarry Smith   for (PetscMPIInt i = 0; i < nrecvs; i++) PetscCallMPI(MPIU_Irecv(rvalues + (rstarts[i] - rstarts[0]), ncols, rtype[i], rprocs[i], tag, comm, rwaits + i));
572f32d5d43SBarry Smith 
57387753ddeSHong Zhang   stype = contents->stype;
5746497c311SBarry Smith   for (PetscMPIInt i = 0; i < nsends; i++) PetscCallMPI(MPIU_Isend(b, ncols, stype[i], sprocs[i], tag, comm, swaits + i));
5752636ff26SBarry Smith 
5769566063dSJacob Faibussowitsch   if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi, rwaits, MPI_STATUSES_IGNORE));
5779566063dSJacob Faibussowitsch   if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi, swaits, MPI_STATUSES_IGNORE));
578f32d5d43SBarry Smith 
5799566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL));
5809566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL));
5819566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B, &b));
5829566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(workB, &rvalues));
5833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58487753ddeSHong Zhang }
585f32d5d43SBarry Smith 
586d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A, Mat B, Mat C)
587d71ae5a4SJacob Faibussowitsch {
588f32d5d43SBarry Smith   Mat_MPIAIJ      *aij    = (Mat_MPIAIJ *)A->data;
589f32d5d43SBarry Smith   Mat_MPIDense    *bdense = (Mat_MPIDense *)B->data;
590f32d5d43SBarry Smith   Mat_MPIDense    *cdense = (Mat_MPIDense *)C->data;
591f32d5d43SBarry Smith   Mat              workB;
59287753ddeSHong Zhang   MPIAIJ_MPIDense *contents;
5939123193aSHong Zhang 
5949123193aSHong Zhang   PetscFunctionBegin;
5956718818eSStefano Zampini   MatCheckProduct(C, 3);
59628b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5976718818eSStefano Zampini   contents = (MPIAIJ_MPIDense *)C->product->data;
598f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B */
5995ea7661aSPierre Jolivet   /* TODO: this calls a symbolic multiplication every time, which could be avoided */
600fb842aefSJose E. Roman   PetscCall(MatMatMult(aij->A, bdense->A, MAT_REUSE_MATRIX, PETSC_CURRENT, &cdense->A));
6015ea7661aSPierre Jolivet   if (contents->workB->cmap->n == B->cmap->N) {
60287753ddeSHong Zhang     /* get off processor parts of B needed to complete C=A*B */
6039566063dSJacob Faibussowitsch     PetscCall(MatMPIDenseScatter(A, B, 0, C, &workB));
604f32d5d43SBarry Smith 
605f32d5d43SBarry Smith     /* off-diagonal block of A times nonlocal rows of B */
6069566063dSJacob Faibussowitsch     PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
60787753ddeSHong Zhang   } else {
6085ea7661aSPierre Jolivet     Mat       Bb, Cb;
6096497c311SBarry Smith     PetscInt  BN = B->cmap->N, n = contents->workB->cmap->n;
610664c1e85SStefano Zampini     PetscBool ccpu;
61187753ddeSHong Zhang 
61208401ef6SPierre Jolivet     PetscCheck(n > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Column block size %" PetscInt_FMT " must be positive", n);
613664c1e85SStefano Zampini     /* Prevent from unneeded copies back and forth from the GPU
614664c1e85SStefano Zampini        when getting and restoring the submatrix
615664c1e85SStefano Zampini        We need a proper GPU code for AIJ * dense in parallel */
6169566063dSJacob Faibussowitsch     PetscCall(MatBoundToCPU(C, &ccpu));
6179566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C, PETSC_TRUE));
6186497c311SBarry Smith     for (PetscInt i = 0; i < BN; i += n) {
619a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(B, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Bb));
620a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(C, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Cb));
62187753ddeSHong Zhang 
6225ea7661aSPierre Jolivet       /* get off processor parts of B needed to complete C=A*B */
6239566063dSJacob Faibussowitsch       PetscCall(MatMPIDenseScatter(A, Bb, (i + n) > BN, C, &workB));
6245ea7661aSPierre Jolivet 
6255ea7661aSPierre Jolivet       /* off-diagonal block of A times nonlocal rows of B */
6265ea7661aSPierre Jolivet       cdense = (Mat_MPIDense *)Cb->data;
6279566063dSJacob Faibussowitsch       PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
6289566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(B, &Bb));
6299566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(C, &Cb));
63087753ddeSHong Zhang     }
6319566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C, ccpu));
63287753ddeSHong Zhang   }
6333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6349123193aSHong Zhang }
635cf1a0672SHong Zhang 
636d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A, Mat P, Mat C)
637d71ae5a4SJacob Faibussowitsch {
638cf1a0672SHong Zhang   Mat_MPIAIJ          *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
639f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data;
640f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data;
641cf1a0672SHong Zhang   PetscInt            *adi = ad->i, *adj, *aoi = ao->i, *aoj;
642cf1a0672SHong Zhang   PetscScalar         *ada, *aoa, *cda = cd->a, *coa = co->a;
643cf1a0672SHong Zhang   Mat_SeqAIJ          *p_loc, *p_oth;
644cf1a0672SHong Zhang   PetscInt            *pi_loc, *pj_loc, *pi_oth, *pj_oth, *pj;
64529825010SHong Zhang   PetscScalar         *pa_loc, *pa_oth, *pa, valtmp, *ca;
64629825010SHong Zhang   PetscInt             cm = C->rmap->n, anz, pnz;
647cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
64880da8df7SHong Zhang   PetscScalar         *apa_sparse;
649ce496241SStefano Zampini   const PetscScalar   *dummy;
650cf1a0672SHong Zhang   PetscInt            *api, *apj, *apJ, i, j, k, row;
65129825010SHong Zhang   PetscInt             cstart = C->cmap->rstart;
65229825010SHong Zhang   PetscInt             cdnz, conz, k0, k1, nextp;
653a7c7454dSHong Zhang   MPI_Comm             comm;
654a7c7454dSHong Zhang   PetscMPIInt          size;
6551634b032SHong Zhang 
6561634b032SHong Zhang   PetscFunctionBegin;
6576718818eSStefano Zampini   MatCheckProduct(C, 3);
658cc1eb50dSBarry Smith   ptap = (MatProductCtx_APMPI *)C->product->data;
65928b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
6609566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
6619566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
662aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
663a7c7454dSHong Zhang 
66465e4b4d4SStefano Zampini   /* flag CPU mask for C */
66565e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
66665e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
66765e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
66865e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
66965e4b4d4SStefano Zampini #endif
67080da8df7SHong Zhang   apa_sparse = ptap->apa;
67180da8df7SHong Zhang 
672cf1a0672SHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
673cf1a0672SHong Zhang   /* update numerical values of P_oth and P_loc */
6749566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
6759566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
676cf1a0672SHong Zhang 
677cf1a0672SHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
678cf1a0672SHong Zhang   /* get data from symbolic products */
679f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
6809371c9d4SSatish Balay   pi_loc = p_loc->i;
6819371c9d4SSatish Balay   pj_loc = p_loc->j;
6829371c9d4SSatish Balay   pa_loc = p_loc->a;
683a7c7454dSHong Zhang   if (size > 1) {
684f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
6859371c9d4SSatish Balay     pi_oth = p_oth->i;
6869371c9d4SSatish Balay     pj_oth = p_oth->j;
6879371c9d4SSatish Balay     pa_oth = p_oth->a;
68820e3dc75SHong Zhang   } else {
6899371c9d4SSatish Balay     p_oth  = NULL;
6909371c9d4SSatish Balay     pi_oth = NULL;
6919371c9d4SSatish Balay     pj_oth = NULL;
6929371c9d4SSatish Balay     pa_oth = NULL;
693a7c7454dSHong Zhang   }
694cf1a0672SHong Zhang 
695ce496241SStefano Zampini   /* trigger copy to CPU */
6969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy));
6979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy));
6989566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy));
6999566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy));
70029825010SHong Zhang   api = ptap->api;
70129825010SHong Zhang   apj = ptap->apj;
702cf1a0672SHong Zhang   for (i = 0; i < cm; i++) {
70329825010SHong Zhang     apJ = apj + api[i];
70429825010SHong Zhang 
705cf1a0672SHong Zhang     /* diagonal portion of A */
706cf1a0672SHong Zhang     anz = adi[i + 1] - adi[i];
707cf1a0672SHong Zhang     adj = ad->j + adi[i];
708cf1a0672SHong Zhang     ada = ad->a + adi[i];
709cf1a0672SHong Zhang     for (j = 0; j < anz; j++) {
710cf1a0672SHong Zhang       row = adj[j];
711cf1a0672SHong Zhang       pnz = pi_loc[row + 1] - pi_loc[row];
712cf1a0672SHong Zhang       pj  = pj_loc + pi_loc[row];
713cf1a0672SHong Zhang       pa  = pa_loc + pi_loc[row];
71429825010SHong Zhang       /* perform sparse axpy */
715cf1a0672SHong Zhang       valtmp = ada[j];
71629825010SHong Zhang       nextp  = 0;
71729825010SHong Zhang       for (k = 0; nextp < pnz; k++) {
71829825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
71929825010SHong Zhang           apa_sparse[k] += valtmp * pa[nextp++];
72029825010SHong Zhang         }
7211634b032SHong Zhang       }
7229566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * pnz));
723cf1a0672SHong Zhang     }
7241634b032SHong Zhang 
725cf1a0672SHong Zhang     /* off-diagonal portion of A */
726cf1a0672SHong Zhang     anz = aoi[i + 1] - aoi[i];
7278e3a54c0SPierre Jolivet     aoj = PetscSafePointerPlusOffset(ao->j, aoi[i]);
7288e3a54c0SPierre Jolivet     aoa = PetscSafePointerPlusOffset(ao->a, aoi[i]);
729cf1a0672SHong Zhang     for (j = 0; j < anz; j++) {
730cf1a0672SHong Zhang       row = aoj[j];
731cf1a0672SHong Zhang       pnz = pi_oth[row + 1] - pi_oth[row];
732cf1a0672SHong Zhang       pj  = pj_oth + pi_oth[row];
733cf1a0672SHong Zhang       pa  = pa_oth + pi_oth[row];
73429825010SHong Zhang       /* perform sparse axpy */
735cf1a0672SHong Zhang       valtmp = aoa[j];
73629825010SHong Zhang       nextp  = 0;
73729825010SHong Zhang       for (k = 0; nextp < pnz; k++) {
73829825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
73929825010SHong Zhang           apa_sparse[k] += valtmp * pa[nextp++];
74029825010SHong Zhang         }
741cf1a0672SHong Zhang       }
7429566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * pnz));
743cf1a0672SHong Zhang     }
7441634b032SHong Zhang 
745cf1a0672SHong Zhang     /* set values in C */
746cf1a0672SHong Zhang     cdnz = cd->i[i + 1] - cd->i[i];
747cf1a0672SHong Zhang     conz = co->i[i + 1] - co->i[i];
7481634b032SHong Zhang 
749910cf402Sprj-     /* 1st off-diagonal part of C */
7508e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
751cf1a0672SHong Zhang     k  = 0;
752cf1a0672SHong Zhang     for (k0 = 0; k0 < conz; k0++) {
753cf1a0672SHong Zhang       if (apJ[k] >= cstart) break;
75429825010SHong Zhang       ca[k0]        = apa_sparse[k];
75529825010SHong Zhang       apa_sparse[k] = 0.0;
756cf1a0672SHong Zhang       k++;
757cf1a0672SHong Zhang     }
7581634b032SHong Zhang 
759cf1a0672SHong Zhang     /* diagonal part of C */
760cf1a0672SHong Zhang     ca = cda + cd->i[i];
761cf1a0672SHong Zhang     for (k1 = 0; k1 < cdnz; k1++) {
76229825010SHong Zhang       ca[k1]        = apa_sparse[k];
76329825010SHong Zhang       apa_sparse[k] = 0.0;
764cf1a0672SHong Zhang       k++;
765cf1a0672SHong Zhang     }
766cf1a0672SHong Zhang 
767910cf402Sprj-     /* 2nd off-diagonal part of C */
7688e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
769cf1a0672SHong Zhang     for (; k0 < conz; k0++) {
77029825010SHong Zhang       ca[k0]        = apa_sparse[k];
77129825010SHong Zhang       apa_sparse[k] = 0.0;
772cf1a0672SHong Zhang       k++;
773cf1a0672SHong Zhang     }
774cf1a0672SHong Zhang   }
7759566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
7769566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
7773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
778cf1a0672SHong Zhang }
779cf1a0672SHong Zhang 
7800fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */
781d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A, Mat P, PetscReal fill, Mat C)
782d71ae5a4SJacob Faibussowitsch {
783ce94432eSBarry Smith   MPI_Comm             comm;
784a7c7454dSHong Zhang   PetscMPIInt          size;
785cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
7860298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
7876718818eSStefano Zampini   Mat_MPIAIJ          *a  = (Mat_MPIAIJ *)A->data;
788f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth;
7897dbaa2c6Sandi selinger   PetscInt            *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
790cf1a0672SHong Zhang   PetscInt            *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
7918c78258cSHong Zhang   PetscInt             i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi, *lnk, apnz_max = 1;
792e5ab8c0aSKarl Rupp   PetscInt             am = A->rmap->n, pn = P->cmap->n, pm = P->rmap->n, lsize = pn + 20;
793cf1a0672SHong Zhang   PetscReal            afill;
794b92f168fSBarry Smith   MatType              mtype;
795cf1a0672SHong Zhang 
796cf1a0672SHong Zhang   PetscFunctionBegin;
7976718818eSStefano Zampini   MatCheckProduct(C, 4);
79828b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
7999566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
8009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
801a7c7454dSHong Zhang 
802cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
8039566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
804cf1a0672SHong Zhang 
805cf1a0672SHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
8069566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
80719f0e57aSHong Zhang 
808cf1a0672SHong Zhang   /* get P_loc by taking all local rows of P */
8099566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
810cf1a0672SHong Zhang 
811f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
8129371c9d4SSatish Balay   pi_loc = p_loc->i;
8139371c9d4SSatish Balay   pj_loc = p_loc->j;
814a7c7454dSHong Zhang   if (size > 1) {
815f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
8169371c9d4SSatish Balay     pi_oth = p_oth->i;
8179371c9d4SSatish Balay     pj_oth = p_oth->j;
818968382fdSHong Zhang   } else {
81920e3dc75SHong Zhang     p_oth  = NULL;
8209371c9d4SSatish Balay     pi_oth = NULL;
8219371c9d4SSatish Balay     pj_oth = NULL;
822a7c7454dSHong Zhang   }
823cf1a0672SHong Zhang 
824cf1a0672SHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
82584648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &api));
826cf1a0672SHong Zhang   ptap->api = api;
827cf1a0672SHong Zhang   api[0]    = 0;
828cf1a0672SHong Zhang 
8299566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(lsize, &lnk));
830cf1a0672SHong Zhang 
831cf1a0672SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
8329566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
833cf1a0672SHong Zhang   current_space = free_space;
834d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
835cf1a0672SHong Zhang   for (i = 0; i < am; i++) {
836cf1a0672SHong Zhang     /* diagonal portion of A */
837cf1a0672SHong Zhang     nzi = adi[i + 1] - adi[i];
838cf1a0672SHong Zhang     for (j = 0; j < nzi; j++) {
839cf1a0672SHong Zhang       row  = *adj++;
840cf1a0672SHong Zhang       pnz  = pi_loc[row + 1] - pi_loc[row];
841cf1a0672SHong Zhang       Jptr = pj_loc + pi_loc[row];
8428a210135Sandi selinger       /* Expand list if it is not long enough */
8438328dd82Sandi selinger       if (pnz + apnz_max > lsize) {
8448328dd82Sandi selinger         lsize = pnz + apnz_max;
8459566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8468a210135Sandi selinger       }
847cf1a0672SHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
8489566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8498a210135Sandi selinger       apnz       = *lnk; /* The first element in the list is the number of items in the list */
8508a210135Sandi selinger       api[i + 1] = api[i] + apnz;
8518c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
852cf1a0672SHong Zhang     }
853cf1a0672SHong Zhang     /* off-diagonal portion of A */
854cf1a0672SHong Zhang     nzi = aoi[i + 1] - aoi[i];
855cf1a0672SHong Zhang     for (j = 0; j < nzi; j++) {
856cf1a0672SHong Zhang       row  = *aoj++;
857cf1a0672SHong Zhang       pnz  = pi_oth[row + 1] - pi_oth[row];
858cf1a0672SHong Zhang       Jptr = pj_oth + pi_oth[row];
8598a210135Sandi selinger       /* Expand list if it is not long enough */
8608328dd82Sandi selinger       if (pnz + apnz_max > lsize) {
8618328dd82Sandi selinger         lsize = pnz + apnz_max;
8629566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8638a210135Sandi selinger       }
8648a210135Sandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
8659566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8668a210135Sandi selinger       apnz       = *lnk; /* The first element in the list is the number of items in the list */
8678a210135Sandi selinger       api[i + 1] = api[i] + apnz;
8688c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
869cf1a0672SHong Zhang     }
8708c78258cSHong Zhang 
8718c78258cSHong Zhang     /* add missing diagonal entry */
8728c78258cSHong Zhang     if (C->force_diagonals) {
8738c78258cSHong Zhang       j = i + rstart; /* column index */
8749566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1, &j, lnk));
8758c78258cSHong Zhang     }
8768c78258cSHong Zhang 
877f84c536bSHong Zhang     apnz       = *lnk;
878cf1a0672SHong Zhang     api[i + 1] = api[i] + apnz;
8798a210135Sandi selinger     if (apnz > apnz_max) apnz_max = apnz;
880cf1a0672SHong Zhang 
881cf1a0672SHong Zhang     /* if free space is not available, double the total space in the list */
882cf1a0672SHong Zhang     if (current_space->local_remaining < apnz) {
8839566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), &current_space));
884cf1a0672SHong Zhang       nspacedouble++;
885cf1a0672SHong Zhang     }
886cf1a0672SHong Zhang 
887cf1a0672SHong Zhang     /* Copy data into free space, then initialize lnk */
8889566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(apnz, current_space->array, lnk));
8899566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
8902205254eSKarl Rupp 
891cf1a0672SHong Zhang     current_space->array += apnz;
892cf1a0672SHong Zhang     current_space->local_used += apnz;
893cf1a0672SHong Zhang     current_space->local_remaining -= apnz;
894cf1a0672SHong Zhang   }
895cf1a0672SHong Zhang 
896cf1a0672SHong Zhang   /* Allocate space for apj, initialize apj, and */
897cf1a0672SHong Zhang   /* destroy list of free space and other temporary array(s) */
89884648c2dSPierre Jolivet   PetscCall(PetscMalloc1(api[am], &ptap->apj));
899cf1a0672SHong Zhang   apj = ptap->apj;
9009566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
9019566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
902cf1a0672SHong Zhang 
9034222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
9049566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
9059566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
9069566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
9079566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
9089566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
909d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
910cf1a0672SHong Zhang 
9114222ddf1SHong Zhang   /* malloc apa for assembly C */
9129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(apnz_max, &ptap->apa));
91317f75172Sandi selinger 
9149566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
915799b351eSPierre Jolivet   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
9169566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
9179566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
9189566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
919cf1a0672SHong Zhang 
9204222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
9214222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
922cf1a0672SHong Zhang 
9234222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
9246718818eSStefano Zampini   C->product->data    = ptap;
925cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult;
926cf1a0672SHong Zhang 
927cf1a0672SHong Zhang   /* set MatInfo */
928118727c9SMark F. Adams   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
929cf1a0672SHong Zhang   if (afill < 1.0) afill = 1.0;
9304222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
9314222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
9324222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
933cf1a0672SHong Zhang 
934cf1a0672SHong Zhang #if defined(PETSC_USE_INFO)
935cf1a0672SHong Zhang   if (api[am]) {
9369566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
9379566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
938cf1a0672SHong Zhang   } else {
9399566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
940cf1a0672SHong Zhang   }
941cf1a0672SHong Zhang #endif
9423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9431634b032SHong Zhang }
944f96d37fcSHong Zhang 
945a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication.  */
946a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the    */
947a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once.     */
948d71ae5a4SJacob Faibussowitsch static void Merge3SortedArrays(PetscInt size1, PetscInt *in1, PetscInt size2, PetscInt *in2, PetscInt size3, PetscInt *in3, PetscInt *size4, PetscInt *out)
949d71ae5a4SJacob Faibussowitsch {
950a9d7e0ccSandi selinger   int i = 0, j = 0, k = 0, l = 0;
951a9d7e0ccSandi selinger 
952a9d7e0ccSandi selinger   /* Traverse all three arrays */
953a9d7e0ccSandi selinger   while (i < size1 && j < size2 && k < size3) {
954a9d7e0ccSandi selinger     if (in1[i] < in2[j] && in1[i] < in3[k]) {
955a9d7e0ccSandi selinger       out[l++] = in1[i++];
9569371c9d4SSatish Balay     } else if (in2[j] < in1[i] && in2[j] < in3[k]) {
957a9d7e0ccSandi selinger       out[l++] = in2[j++];
9589371c9d4SSatish Balay     } else if (in3[k] < in1[i] && in3[k] < in2[j]) {
959a9d7e0ccSandi selinger       out[l++] = in3[k++];
9609371c9d4SSatish Balay     } else if (in1[i] == in2[j] && in1[i] < in3[k]) {
961a9d7e0ccSandi selinger       out[l++] = in1[i];
962a9d7e0ccSandi selinger       i++, j++;
9639371c9d4SSatish Balay     } else if (in1[i] == in3[k] && in1[i] < in2[j]) {
964a9d7e0ccSandi selinger       out[l++] = in1[i];
965a9d7e0ccSandi selinger       i++, k++;
9669371c9d4SSatish Balay     } else if (in3[k] == in2[j] && in2[j] < in1[i]) {
967a9d7e0ccSandi selinger       out[l++] = in2[j];
968a9d7e0ccSandi selinger       k++, j++;
9699371c9d4SSatish Balay     } else if (in1[i] == in2[j] && in1[i] == in3[k]) {
970a9d7e0ccSandi selinger       out[l++] = in1[i];
971a9d7e0ccSandi selinger       i++, j++, k++;
972a9d7e0ccSandi selinger     }
973a9d7e0ccSandi selinger   }
974a9d7e0ccSandi selinger 
975a9d7e0ccSandi selinger   /* Traverse two remaining arrays */
976a9d7e0ccSandi selinger   while (i < size1 && j < size2) {
977a9d7e0ccSandi selinger     if (in1[i] < in2[j]) {
978a9d7e0ccSandi selinger       out[l++] = in1[i++];
9799371c9d4SSatish Balay     } else if (in1[i] > in2[j]) {
980a9d7e0ccSandi selinger       out[l++] = in2[j++];
9819371c9d4SSatish Balay     } else {
982a9d7e0ccSandi selinger       out[l++] = in1[i];
983a9d7e0ccSandi selinger       i++, j++;
984a9d7e0ccSandi selinger     }
985a9d7e0ccSandi selinger   }
986a9d7e0ccSandi selinger 
987a9d7e0ccSandi selinger   while (i < size1 && k < size3) {
988a9d7e0ccSandi selinger     if (in1[i] < in3[k]) {
989a9d7e0ccSandi selinger       out[l++] = in1[i++];
9909371c9d4SSatish Balay     } else if (in1[i] > in3[k]) {
991a9d7e0ccSandi selinger       out[l++] = in3[k++];
9929371c9d4SSatish Balay     } else {
993a9d7e0ccSandi selinger       out[l++] = in1[i];
994a9d7e0ccSandi selinger       i++, k++;
995a9d7e0ccSandi selinger     }
996a9d7e0ccSandi selinger   }
997a9d7e0ccSandi selinger 
998a9d7e0ccSandi selinger   while (k < size3 && j < size2) {
999a9d7e0ccSandi selinger     if (in3[k] < in2[j]) {
1000a9d7e0ccSandi selinger       out[l++] = in3[k++];
10019371c9d4SSatish Balay     } else if (in3[k] > in2[j]) {
1002a9d7e0ccSandi selinger       out[l++] = in2[j++];
10039371c9d4SSatish Balay     } else {
1004a9d7e0ccSandi selinger       out[l++] = in3[k];
1005a9d7e0ccSandi selinger       k++, j++;
1006a9d7e0ccSandi selinger     }
1007a9d7e0ccSandi selinger   }
1008a9d7e0ccSandi selinger 
1009a9d7e0ccSandi selinger   /* Traverse one remaining array */
1010a9d7e0ccSandi selinger   while (i < size1) out[l++] = in1[i++];
1011a9d7e0ccSandi selinger   while (j < size2) out[l++] = in2[j++];
1012a9d7e0ccSandi selinger   while (k < size3) out[l++] = in3[k++];
1013a9d7e0ccSandi selinger 
1014a9d7e0ccSandi selinger   *size4 = l;
1015a9d7e0ccSandi selinger }
1016a9d7e0ccSandi selinger 
101773b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and  */
101873b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential)      */
101973b67375Sandi selinger /* matrix-matrix multiplications.  */
1020d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C)
1021d71ae5a4SJacob Faibussowitsch {
1022a9d7e0ccSandi selinger   MPI_Comm             comm;
1023a9d7e0ccSandi selinger   PetscMPIInt          size;
1024cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
1025a9d7e0ccSandi selinger   PetscFreeSpaceList   free_space_diag = NULL, current_space = NULL;
1026a9d7e0ccSandi selinger   Mat_MPIAIJ          *a  = (Mat_MPIAIJ *)A->data;
1027f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc;
1028a9d7e0ccSandi selinger   Mat_MPIAIJ          *p = (Mat_MPIAIJ *)P->data;
1029a9d7e0ccSandi selinger   Mat_SeqAIJ          *adpd_seq, *p_off, *aopoth_seq;
1030a9d7e0ccSandi selinger   PetscInt             adponz, adpdnz;
10317dbaa2c6Sandi selinger   PetscInt            *pi_loc, *dnz, *onz;
1032a9d7e0ccSandi selinger   PetscInt            *adi = ad->i, *adj = ad->j, *aoi = ao->i, rstart = A->rmap->rstart;
10339371c9d4SSatish Balay   PetscInt            *lnk, i, i1 = 0, pnz, row, *adpoi, *adpoj, *api, *adpoJ, *aopJ, *apJ, *Jptr, aopnz, nspacedouble = 0, j, nzi, *apj, apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj;
1034a016958eSandi selinger   PetscInt             am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n, p_colstart, p_colend;
1035a9d7e0ccSandi selinger   PetscBT              lnkbt;
1036a9d7e0ccSandi selinger   PetscReal            afill;
1037a9d7e0ccSandi selinger   PetscMPIInt          rank;
1038a9d7e0ccSandi selinger   Mat                  adpd, aopoth;
1039b92f168fSBarry Smith   MatType              mtype;
1040e83e5f86SFande Kong   const char          *prefix;
1041a9d7e0ccSandi selinger 
1042a9d7e0ccSandi selinger   PetscFunctionBegin;
10436718818eSStefano Zampini   MatCheckProduct(C, 4);
104428b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
10459566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
10469566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
10479566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
10489566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend));
1049a9d7e0ccSandi selinger 
1050cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
10519566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1052a9d7e0ccSandi selinger 
1053a9d7e0ccSandi selinger   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
10549566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1055a9d7e0ccSandi selinger 
1056a9d7e0ccSandi selinger   /* get P_loc by taking all local rows of P */
10579566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
1058a9d7e0ccSandi selinger 
1059f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
1060a9d7e0ccSandi selinger   pi_loc = p_loc->i;
1061a9d7e0ccSandi selinger 
1062a9d7e0ccSandi selinger   /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */
106384648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &api));
106484648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &adpoi));
1065a9d7e0ccSandi selinger 
1066a9d7e0ccSandi selinger   adpoi[0]  = 0;
1067a9d7e0ccSandi selinger   ptap->api = api;
1068a9d7e0ccSandi selinger   api[0]    = 0;
1069a9d7e0ccSandi selinger 
1070a9d7e0ccSandi selinger   /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */
10719566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
1072d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
1073a9d7e0ccSandi selinger 
1074a9d7e0ccSandi selinger   /* Symbolic calc of A_loc_diag * P_loc_diag */
10759566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
10769566063dSJacob Faibussowitsch   PetscCall(MatProductCreate(a->A, p->A, NULL, &adpd));
10779566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
10789566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(adpd, prefix));
10799566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(adpd, "inner_diag_"));
10804222ddf1SHong Zhang 
10819566063dSJacob Faibussowitsch   PetscCall(MatProductSetType(adpd, MATPRODUCT_AB));
10829566063dSJacob Faibussowitsch   PetscCall(MatProductSetAlgorithm(adpd, "sorted"));
10839566063dSJacob Faibussowitsch   PetscCall(MatProductSetFill(adpd, fill));
10849566063dSJacob Faibussowitsch   PetscCall(MatProductSetFromOptions(adpd));
10858c78258cSHong Zhang 
10868c78258cSHong Zhang   adpd->force_diagonals = C->force_diagonals;
10879566063dSJacob Faibussowitsch   PetscCall(MatProductSymbolic(adpd));
10884222ddf1SHong Zhang 
1089a9d7e0ccSandi selinger   adpd_seq = (Mat_SeqAIJ *)((adpd)->data);
10909371c9d4SSatish Balay   adpdi    = adpd_seq->i;
10919371c9d4SSatish Balay   adpdj    = adpd_seq->j;
1092f4f49eeaSPierre Jolivet   p_off    = (Mat_SeqAIJ *)p->B->data;
10939371c9d4SSatish Balay   poff_i   = p_off->i;
10949371c9d4SSatish Balay   poff_j   = p_off->j;
1095a9d7e0ccSandi selinger 
109673b67375Sandi selinger   /* j_temp stores indices of a result row before they are added to the linked list */
109784648c2dSPierre Jolivet   PetscCall(PetscMalloc1(pN, &j_temp));
1098a9d7e0ccSandi selinger 
1099a9d7e0ccSandi selinger   /* Symbolic calc of the A_diag * p_loc_off */
1100a9d7e0ccSandi selinger   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
11019566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space_diag));
1102a9d7e0ccSandi selinger   current_space = free_space_diag;
1103a9d7e0ccSandi selinger 
1104a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1105a9d7e0ccSandi selinger     /* A_diag * P_loc_off */
1106a9d7e0ccSandi selinger     nzi = adi[i + 1] - adi[i];
1107a9d7e0ccSandi selinger     for (j = 0; j < nzi; j++) {
1108a9d7e0ccSandi selinger       row  = *adj++;
1109a9d7e0ccSandi selinger       pnz  = poff_i[row + 1] - poff_i[row];
1110a9d7e0ccSandi selinger       Jptr = poff_j + poff_i[row];
1111ad540459SPierre Jolivet       for (i1 = 0; i1 < pnz; i1++) j_temp[i1] = p->garray[Jptr[i1]];
1112a9d7e0ccSandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
11139566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, j_temp, lnk, lnkbt));
1114a9d7e0ccSandi selinger     }
1115a9d7e0ccSandi selinger 
1116a9d7e0ccSandi selinger     adponz       = lnk[0];
1117a9d7e0ccSandi selinger     adpoi[i + 1] = adpoi[i] + adponz;
1118a9d7e0ccSandi selinger 
1119a9d7e0ccSandi selinger     /* if free space is not available, double the total space in the list */
1120a9d7e0ccSandi selinger     if (current_space->local_remaining < adponz) {
11219566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz, current_space->total_array_size), &current_space));
1122a9d7e0ccSandi selinger       nspacedouble++;
1123a9d7e0ccSandi selinger     }
1124a9d7e0ccSandi selinger 
1125a9d7e0ccSandi selinger     /* Copy data into free space, then initialize lnk */
11269566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN, adponz, current_space->array, lnk, lnkbt));
1127a9d7e0ccSandi selinger 
1128a9d7e0ccSandi selinger     current_space->array += adponz;
1129a9d7e0ccSandi selinger     current_space->local_used += adponz;
1130a9d7e0ccSandi selinger     current_space->local_remaining -= adponz;
1131a9d7e0ccSandi selinger   }
1132a9d7e0ccSandi selinger 
1133a9d7e0ccSandi selinger   /* Symbolic calc of A_off * P_oth */
11349566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(a->B, prefix));
11359566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(a->B, "inner_offdiag_"));
11369566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &aopoth));
11379566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth));
1138a9d7e0ccSandi selinger   aopoth_seq = (Mat_SeqAIJ *)((aopoth)->data);
11399371c9d4SSatish Balay   aopothi    = aopoth_seq->i;
11409371c9d4SSatish Balay   aopothj    = aopoth_seq->j;
1141a9d7e0ccSandi selinger 
1142a9d7e0ccSandi selinger   /* Allocate space for apj, adpj, aopj, ... */
1143a9d7e0ccSandi selinger   /* destroy lists of free space and other temporary array(s) */
1144a9d7e0ccSandi selinger 
114584648c2dSPierre Jolivet   PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am], &ptap->apj));
114684648c2dSPierre Jolivet   PetscCall(PetscMalloc1(adpoi[am], &adpoj));
1147a9d7e0ccSandi selinger 
1148a9d7e0ccSandi selinger   /* Copy from linked list to j-array */
11499566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space_diag, adpoj));
11509566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
1151a9d7e0ccSandi selinger 
1152a9d7e0ccSandi selinger   adpoJ = adpoj;
1153a9d7e0ccSandi selinger   adpdJ = adpdj;
1154a9d7e0ccSandi selinger   aopJ  = aopothj;
1155a9d7e0ccSandi selinger   apj   = ptap->apj;
1156a9d7e0ccSandi selinger   apJ   = apj; /* still empty */
1157a9d7e0ccSandi selinger 
1158a9d7e0ccSandi selinger   /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */
1159a9d7e0ccSandi selinger   /* A_diag * P_loc_diag to get A*P */
1160a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1161a9d7e0ccSandi selinger     aopnz  = aopothi[i + 1] - aopothi[i];
1162a9d7e0ccSandi selinger     adponz = adpoi[i + 1] - adpoi[i];
1163a9d7e0ccSandi selinger     adpdnz = adpdi[i + 1] - adpdi[i];
1164a9d7e0ccSandi selinger 
1165a9d7e0ccSandi selinger     /* Correct indices from A_diag*P_diag */
1166ad540459SPierre Jolivet     for (i1 = 0; i1 < adpdnz; i1++) adpdJ[i1] += p_colstart;
1167a9d7e0ccSandi selinger     /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */
1168a9d7e0ccSandi selinger     Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ);
11699566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, apJ, dnz, onz));
1170a9d7e0ccSandi selinger 
1171a9d7e0ccSandi selinger     aopJ += aopnz;
1172a9d7e0ccSandi selinger     adpoJ += adponz;
1173a9d7e0ccSandi selinger     adpdJ += adpdnz;
1174a9d7e0ccSandi selinger     apJ += apnz;
1175a9d7e0ccSandi selinger     api[i + 1] = api[i] + apnz;
1176a9d7e0ccSandi selinger   }
1177a9d7e0ccSandi selinger 
1178a9d7e0ccSandi selinger   /* malloc apa to store dense row A[i,:]*P */
117984648c2dSPierre Jolivet   PetscCall(PetscCalloc1(pN, &ptap->apa));
1180a9d7e0ccSandi selinger 
11814222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
11829566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
11839566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
11849566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
11859566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
11869566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1187d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
118817f75172Sandi selinger 
11899566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
1190799b351eSPierre Jolivet   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
11919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
11929566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
11939566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
119417f75172Sandi selinger 
11954222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
11964222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
1197a9d7e0ccSandi selinger 
11984222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
11996718818eSStefano Zampini   C->product->data    = ptap;
1200cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult;
1201a9d7e0ccSandi selinger 
1202a9d7e0ccSandi selinger   /* set MatInfo */
120373b67375Sandi selinger   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
120473b67375Sandi selinger   if (afill < 1.0) afill = 1.0;
12054222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
12064222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
12074222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1208a9d7e0ccSandi selinger 
1209a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO)
1210a9d7e0ccSandi selinger   if (api[am]) {
12119566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
12129566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
1213a9d7e0ccSandi selinger   } else {
12149566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
1215a9d7e0ccSandi selinger   }
1216a9d7e0ccSandi selinger #endif
1217a9d7e0ccSandi selinger 
12189566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&aopoth));
12199566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&adpd));
12209566063dSJacob Faibussowitsch   PetscCall(PetscFree(j_temp));
12219566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoj));
12229566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoi));
12233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1224a9d7e0ccSandi selinger }
1225a9d7e0ccSandi selinger 
1226c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */
1227d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P, Mat A, Mat C)
1228d71ae5a4SJacob Faibussowitsch {
1229cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
123060552ceaSHong Zhang   Mat                  Pt;
1231c216dbf3SHong Zhang 
1232c216dbf3SHong Zhang   PetscFunctionBegin;
12336718818eSStefano Zampini   MatCheckProduct(C, 3);
1234cc1eb50dSBarry Smith   ptap = (MatProductCtx_APMPI *)C->product->data;
123528b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
123628b400f6SJacob Faibussowitsch   PetscCheck(ptap->Pt, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
123760552ceaSHong Zhang 
123860552ceaSHong Zhang   Pt = ptap->Pt;
12391cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(P, Pt));
12409566063dSJacob Faibussowitsch   PetscCall(MatTranspose(P, MAT_REUSE_MATRIX, &Pt));
12419566063dSJacob Faibussowitsch   PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt, A, C));
12423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1243f96d37fcSHong Zhang }
1244f96d37fcSHong Zhang 
1245c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */
1246d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, PetscReal fill, Mat C)
1247d71ae5a4SJacob Faibussowitsch {
1248cc1eb50dSBarry Smith   MatProductCtx_APMPI     *ptap;
12496718818eSStefano Zampini   Mat_MPIAIJ              *p = (Mat_MPIAIJ *)P->data;
1250912837bbSHong Zhang   MPI_Comm                 comm;
1251912837bbSHong Zhang   PetscMPIInt              size, rank;
1252912837bbSHong Zhang   PetscFreeSpaceList       free_space = NULL, current_space = NULL;
12534ede91e3SHong Zhang   PetscInt                 pn = P->cmap->n, aN = A->cmap->N, an = A->cmap->n;
12546497c311SBarry Smith   PetscInt                *lnk, i, k, rstart;
1255912837bbSHong Zhang   PetscBT                  lnkbt;
12566497c311SBarry Smith   PetscMPIInt              tagi, tagj, *len_si, *len_s, *len_ri, nrecv, proc, nsend;
1257ec4bef21SJose E. Roman   PETSC_UNUSED PetscMPIInt icompleted = 0;
12588c78258cSHong Zhang   PetscInt               **buf_rj, **buf_ri, **buf_ri_k, row, ncols, *cols;
12596497c311SBarry Smith   PetscInt                 len, *dnz, *onz, *owners, nzi;
1260912837bbSHong Zhang   PetscInt                 nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1261912837bbSHong Zhang   MPI_Request             *swaits, *rwaits;
1262912837bbSHong Zhang   MPI_Status              *sstatus, rstatus;
1263912837bbSHong Zhang   PetscLayout              rowmap;
1264912837bbSHong Zhang   PetscInt                *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */
1265912837bbSHong Zhang   PetscMPIInt             *len_r, *id_r;          /* array of length of comm->size, store send/recv matrix values */
12667f3e1f30SHong Zhang   PetscInt                *Jptr, *prmap = p->garray, con, j, Crmax;
12674ede91e3SHong Zhang   Mat_SeqAIJ              *a_loc, *c_loc, *c_oth;
1268eec179cfSJacob Faibussowitsch   PetscHMapI               ta;
1269b92f168fSBarry Smith   MatType                  mtype;
1270e83e5f86SFande Kong   const char              *prefix;
1271912837bbSHong Zhang 
1272912837bbSHong Zhang   PetscFunctionBegin;
12739566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
12749566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
12759566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1276912837bbSHong Zhang 
12774222ddf1SHong Zhang   /* create symbolic parallel matrix C */
12789566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
12799566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
1280912837bbSHong Zhang 
12814222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
1282912837bbSHong Zhang 
1283cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
12849566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1285912837bbSHong Zhang 
1286912837bbSHong Zhang   /* (0) compute Rd = Pd^T, Ro = Po^T  */
1287acd337a6SBarry Smith   PetscCall(MatTranspose(p->A, MAT_INITIAL_MATRIX, &ptap->Rd));
1288acd337a6SBarry Smith   PetscCall(MatTranspose(p->B, MAT_INITIAL_MATRIX, &ptap->Ro));
1289912837bbSHong Zhang 
1290669e9c86SHong Zhang   /* (1) compute symbolic A_loc */
12919566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &ptap->A_loc));
1292912837bbSHong Zhang 
12934ede91e3SHong Zhang   /* (2-1) compute symbolic C_oth = Ro*A_loc  */
12949566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
12959566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Ro, prefix));
12969566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Ro, "inner_offdiag_"));
12979566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_oth));
12989566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro, ptap->A_loc, fill, ptap->C_oth));
1299912837bbSHong Zhang 
1300912837bbSHong Zhang   /* (3) send coj of C_oth to other processors  */
1301912837bbSHong Zhang   /* determine row ownership */
13029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &rowmap));
1303912837bbSHong Zhang   rowmap->n  = pn;
1304912837bbSHong Zhang   rowmap->bs = 1;
13059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rowmap));
1306912837bbSHong Zhang   owners = rowmap->range;
1307912837bbSHong Zhang 
1308912837bbSHong Zhang   /* determine the number of messages to send, their lengths */
130984648c2dSPierre Jolivet   PetscCall(PetscMalloc4(size, &len_s, size, &len_si, size, &sstatus, size + 1, &owners_co));
13109566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_s, size));
13119566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_si, size));
1312912837bbSHong Zhang 
1313912837bbSHong Zhang   c_oth = (Mat_SeqAIJ *)ptap->C_oth->data;
13149371c9d4SSatish Balay   coi   = c_oth->i;
13159371c9d4SSatish Balay   coj   = c_oth->j;
1316912837bbSHong Zhang   con   = ptap->C_oth->rmap->n;
1317912837bbSHong Zhang   proc  = 0;
1318912837bbSHong Zhang   for (i = 0; i < con; i++) {
1319912837bbSHong Zhang     while (prmap[i] >= owners[proc + 1]) proc++;
13207f3e1f30SHong Zhang     len_si[proc]++;                     /* num of rows in Co(=Pt*A) to be sent to [proc] */
1321912837bbSHong Zhang     len_s[proc] += coi[i + 1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */
1322912837bbSHong Zhang   }
1323912837bbSHong Zhang 
1324912837bbSHong Zhang   len          = 0; /* max length of buf_si[], see (4) */
1325912837bbSHong Zhang   owners_co[0] = 0;
1326912837bbSHong Zhang   nsend        = 0;
1327912837bbSHong Zhang   for (proc = 0; proc < size; proc++) {
1328912837bbSHong Zhang     owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1329912837bbSHong Zhang     if (len_s[proc]) {
1330912837bbSHong Zhang       nsend++;
1331912837bbSHong Zhang       len_si[proc] = 2 * (len_si[proc] + 1); /* length of buf_si to be sent to [proc] */
1332912837bbSHong Zhang       len += len_si[proc];
1333912837bbSHong Zhang     }
1334912837bbSHong Zhang   }
1335912837bbSHong Zhang 
1336912837bbSHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
13379566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &nrecv));
13389566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, nsend, nrecv, len_s, len_si, &id_r, &len_r, &len_ri));
1339912837bbSHong Zhang 
1340912837bbSHong Zhang   /* post the Irecv and Isend of coj */
13419566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
13429566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, nrecv, id_r, len_r, &buf_rj, &rwaits));
134384648c2dSPierre Jolivet   PetscCall(PetscMalloc1(nsend, &swaits));
1344912837bbSHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1345912837bbSHong Zhang     if (!len_s[proc]) continue;
1346912837bbSHong Zhang     i = owners_co[proc];
13476497c311SBarry Smith     PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1348912837bbSHong Zhang     k++;
1349912837bbSHong Zhang   }
1350912837bbSHong Zhang 
13517f3e1f30SHong Zhang   /* (2-2) compute symbolic C_loc = Rd*A_loc */
13529566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Rd, prefix));
13539566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Rd, "inner_diag_"));
13549566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_loc));
13559566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd, ptap->A_loc, fill, ptap->C_loc));
1356912837bbSHong Zhang   c_loc = (Mat_SeqAIJ *)ptap->C_loc->data;
1357912837bbSHong Zhang 
1358912837bbSHong Zhang   /* receives coj are complete */
135948a46eb9SPierre Jolivet   for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
13609566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
13619566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1362912837bbSHong Zhang 
1363912837bbSHong Zhang   /* add received column indices into ta to update Crmax */
1364f4f49eeaSPierre Jolivet   a_loc = (Mat_SeqAIJ *)ptap->A_loc->data;
1365669e9c86SHong Zhang 
1366669e9c86SHong Zhang   /* create and initialize a linked list */
1367eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(an, &ta)); /* for compute Crmax */
13684ede91e3SHong Zhang   MatRowMergeMax_SeqAIJ(a_loc, ptap->A_loc->rmap->N, ta);
1369669e9c86SHong Zhang 
1370912837bbSHong Zhang   for (k = 0; k < nrecv; k++) { /* k-th received message */
1371912837bbSHong Zhang     Jptr = buf_rj[k];
1372c76ffc5fSJacob Faibussowitsch     for (j = 0; j < len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1));
1373912837bbSHong Zhang   }
1374eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Crmax));
1375eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
1376912837bbSHong Zhang 
1377912837bbSHong Zhang   /* (4) send and recv coi */
13789566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
13799566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, nrecv, id_r, len_ri, &buf_ri, &rwaits));
138084648c2dSPierre Jolivet   PetscCall(PetscMalloc1(len, &buf_s));
1381912837bbSHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1382912837bbSHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1383912837bbSHong Zhang     if (!len_s[proc]) continue;
1384912837bbSHong Zhang     /* form outgoing message for i-structure:
1385912837bbSHong Zhang          buf_si[0]:                 nrows to be sent
1386912837bbSHong Zhang                [1:nrows]:           row index (global)
1387912837bbSHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1388912837bbSHong Zhang     */
1389912837bbSHong Zhang     nrows       = len_si[proc] / 2 - 1; /* num of rows in Co to be sent to [proc] */
1390912837bbSHong Zhang     buf_si_i    = buf_si + nrows + 1;
1391912837bbSHong Zhang     buf_si[0]   = nrows;
1392912837bbSHong Zhang     buf_si_i[0] = 0;
1393912837bbSHong Zhang     nrows       = 0;
1394912837bbSHong Zhang     for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1395912837bbSHong Zhang       nzi                 = coi[i + 1] - coi[i];
1396912837bbSHong Zhang       buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi;   /* i-structure */
1397912837bbSHong Zhang       buf_si[nrows + 1]   = prmap[i] - owners[proc]; /* local row index */
1398912837bbSHong Zhang       nrows++;
1399912837bbSHong Zhang     }
14006497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1401912837bbSHong Zhang     k++;
1402912837bbSHong Zhang     buf_si += len_si[proc];
1403912837bbSHong Zhang   }
140448a46eb9SPierre Jolivet   for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
14059566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
14069566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1407912837bbSHong Zhang 
14089566063dSJacob Faibussowitsch   PetscCall(PetscFree4(len_s, len_si, sstatus, owners_co));
14099566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
14109566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
14119566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1412912837bbSHong Zhang 
14134222ddf1SHong Zhang   /* (5) compute the local portion of C      */
1414bbea24aaSStefano Zampini   /* set initial free space to be Crmax, sufficient for holding nonzeros in each row of C */
14159566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(Crmax, &free_space));
1416912837bbSHong Zhang   current_space = free_space;
1417912837bbSHong Zhang 
14189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(nrecv, &buf_ri_k, nrecv, &nextrow, nrecv, &nextci));
1419912837bbSHong Zhang   for (k = 0; k < nrecv; k++) {
1420912837bbSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1421912837bbSHong Zhang     nrows       = *buf_ri_k[k];
1422912837bbSHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
1423a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1424912837bbSHong Zhang   }
1425912837bbSHong Zhang 
1426d0609cedSBarry Smith   MatPreallocateBegin(comm, pn, an, dnz, onz);
14279566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(Crmax, aN, &lnk, &lnkbt));
14288c78258cSHong Zhang   for (i = 0; i < pn; i++) { /* for each local row of C */
14294222ddf1SHong Zhang     /* add C_loc into C */
1430912837bbSHong Zhang     nzi  = c_loc->i[i + 1] - c_loc->i[i];
1431912837bbSHong Zhang     Jptr = c_loc->j + c_loc->i[i];
14329566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
1433912837bbSHong Zhang 
1434912837bbSHong Zhang     /* add received col data into lnk */
1435912837bbSHong Zhang     for (k = 0; k < nrecv; k++) { /* k-th received message */
1436912837bbSHong Zhang       if (i == *nextrow[k]) {     /* i-th row */
1437912837bbSHong Zhang         nzi  = *(nextci[k] + 1) - *nextci[k];
1438912837bbSHong Zhang         Jptr = buf_rj[k] + *nextci[k];
14399566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
14409371c9d4SSatish Balay         nextrow[k]++;
14419371c9d4SSatish Balay         nextci[k]++;
1442912837bbSHong Zhang       }
1443912837bbSHong Zhang     }
14448c78258cSHong Zhang 
14458c78258cSHong Zhang     /* add missing diagonal entry */
14468c78258cSHong Zhang     if (C->force_diagonals) {
14478c78258cSHong Zhang       k = i + owners[rank]; /* column index */
14489566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1, &k, lnk, lnkbt));
14498c78258cSHong Zhang     }
14508c78258cSHong Zhang 
1451912837bbSHong Zhang     nzi = lnk[0];
1452912837bbSHong Zhang 
1453912837bbSHong Zhang     /* copy data into free space, then initialize lnk */
14549566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(aN, nzi, current_space->array, lnk, lnkbt));
14559566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], nzi, current_space->array, dnz, onz));
1456912837bbSHong Zhang   }
14579566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
14589566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
14599566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceDestroy(free_space));
1460912837bbSHong Zhang 
1461912837bbSHong Zhang   /* local sizes and preallocation */
14629566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, pn, an, PETSC_DETERMINE, PETSC_DETERMINE));
146358b7e2c1SStefano Zampini   PetscCall(PetscLayoutSetBlockSize(C->rmap, P->cmap->bs));
146458b7e2c1SStefano Zampini   PetscCall(PetscLayoutSetBlockSize(C->cmap, A->cmap->bs));
14659566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1466d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
1467912837bbSHong Zhang 
146869be949aSStefano Zampini   /* add C_loc and C_oth to C */
14699566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C, &rstart, NULL));
147069be949aSStefano Zampini   for (i = 0; i < pn; i++) {
14718c78258cSHong Zhang     ncols = c_loc->i[i + 1] - c_loc->i[i];
14728c78258cSHong Zhang     cols  = c_loc->j + c_loc->i[i];
14738c78258cSHong Zhang     row   = rstart + i;
14749566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
14758c78258cSHong Zhang 
147648a46eb9SPierre Jolivet     if (C->force_diagonals) PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, 1, (const PetscInt *)&row, NULL, INSERT_VALUES));
147769be949aSStefano Zampini   }
147869be949aSStefano Zampini   for (i = 0; i < con; i++) {
14798c78258cSHong Zhang     ncols = c_oth->i[i + 1] - c_oth->i[i];
14808c78258cSHong Zhang     cols  = c_oth->j + c_oth->i[i];
14818c78258cSHong Zhang     row   = prmap[i];
14829566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
148369be949aSStefano Zampini   }
14849566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
14859566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
14869566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
148769be949aSStefano Zampini 
1488912837bbSHong Zhang   /* members in merge */
14899566063dSJacob Faibussowitsch   PetscCall(PetscFree(id_r));
14909566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_r));
14919566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri[0]));
14929566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri));
14939566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj[0]));
14949566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj));
14959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rowmap));
1496912837bbSHong Zhang 
14974222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
14986718818eSStefano Zampini   C->product->data    = ptap;
1499cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP;
15003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1501912837bbSHong Zhang }
1502912837bbSHong Zhang 
1503d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, Mat C)
1504d71ae5a4SJacob Faibussowitsch {
15056718818eSStefano Zampini   Mat_MPIAIJ          *p = (Mat_MPIAIJ *)P->data;
1506669e9c86SHong Zhang   Mat_SeqAIJ          *c_seq;
1507cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
1508669e9c86SHong Zhang   Mat                  A_loc, C_loc, C_oth;
1509912837bbSHong Zhang   PetscInt             i, rstart, rend, cm, ncols, row;
1510912837bbSHong Zhang   const PetscInt      *cols;
1511912837bbSHong Zhang   const PetscScalar   *vals;
1512912837bbSHong Zhang 
1513912837bbSHong Zhang   PetscFunctionBegin;
15146718818eSStefano Zampini   MatCheckProduct(C, 3);
1515cc1eb50dSBarry Smith   ptap = (MatProductCtx_APMPI *)C->product->data;
151628b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
151728b400f6SJacob Faibussowitsch   PetscCheck(ptap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
15189566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(C));
1519912837bbSHong Zhang 
1520669e9c86SHong Zhang   /* These matrices are obtained in MatTransposeMatMultSymbolic() */
1521669e9c86SHong Zhang   /* 1) get R = Pd^T, Ro = Po^T */
15221cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(p->A, ptap->Rd));
1523acd337a6SBarry Smith   PetscCall(MatTranspose(p->A, MAT_REUSE_MATRIX, &ptap->Rd));
15241cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(p->B, ptap->Ro));
1525acd337a6SBarry Smith   PetscCall(MatTranspose(p->B, MAT_REUSE_MATRIX, &ptap->Ro));
1526669e9c86SHong Zhang 
1527669e9c86SHong Zhang   /* 2) compute numeric A_loc */
15289566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &ptap->A_loc));
1529912837bbSHong Zhang 
1530669e9c86SHong Zhang   /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */
15314ede91e3SHong Zhang   A_loc = ptap->A_loc;
1532f4f49eeaSPierre Jolivet   PetscCall(ptap->C_loc->ops->matmultnumeric(ptap->Rd, A_loc, ptap->C_loc));
1533f4f49eeaSPierre Jolivet   PetscCall(ptap->C_oth->ops->matmultnumeric(ptap->Ro, A_loc, ptap->C_oth));
1534912837bbSHong Zhang   C_loc = ptap->C_loc;
1535912837bbSHong Zhang   C_oth = ptap->C_oth;
1536912837bbSHong Zhang 
153769be949aSStefano Zampini   /* add C_loc and C_oth to C */
15389566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C, &rstart, &rend));
1539912837bbSHong Zhang 
1540912837bbSHong Zhang   /* C_loc -> C */
1541912837bbSHong Zhang   cm    = C_loc->rmap->N;
1542912837bbSHong Zhang   c_seq = (Mat_SeqAIJ *)C_loc->data;
1543912837bbSHong Zhang   cols  = c_seq->j;
1544912837bbSHong Zhang   vals  = c_seq->a;
1545912837bbSHong Zhang   for (i = 0; i < cm; i++) {
1546912837bbSHong Zhang     ncols = c_seq->i[i + 1] - c_seq->i[i];
1547912837bbSHong Zhang     row   = rstart + i;
15489566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15499371c9d4SSatish Balay     cols += ncols;
15509371c9d4SSatish Balay     vals += ncols;
1551912837bbSHong Zhang   }
1552912837bbSHong Zhang 
1553912837bbSHong Zhang   /* Co -> C, off-processor part */
1554912837bbSHong Zhang   cm    = C_oth->rmap->N;
1555912837bbSHong Zhang   c_seq = (Mat_SeqAIJ *)C_oth->data;
1556912837bbSHong Zhang   cols  = c_seq->j;
1557912837bbSHong Zhang   vals  = c_seq->a;
1558912837bbSHong Zhang   for (i = 0; i < cm; i++) {
1559912837bbSHong Zhang     ncols = c_seq->i[i + 1] - c_seq->i[i];
1560912837bbSHong Zhang     row   = p->garray[i];
15619566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15629371c9d4SSatish Balay     cols += ncols;
15639371c9d4SSatish Balay     vals += ncols;
1564912837bbSHong Zhang   }
15659566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
15669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
15679566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
15683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1569912837bbSHong Zhang }
1570912837bbSHong Zhang 
1571d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P, Mat A, Mat C)
1572d71ae5a4SJacob Faibussowitsch {
1573cc1eb50dSBarry Smith   MatMergeSeqsToMPI   *merge;
15746718818eSStefano Zampini   Mat_MPIAIJ          *p  = (Mat_MPIAIJ *)P->data;
1575f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data;
1576cc1eb50dSBarry Smith   MatProductCtx_APMPI *ap;
1577e745005bSHong Zhang   PetscInt            *adj;
1578e745005bSHong Zhang   PetscInt             i, j, k, anz, pnz, row, *cj, nexta;
1579e745005bSHong Zhang   MatScalar           *ada, *ca, valtmp;
1580d6ab1dc0SHong Zhang   PetscInt             am = A->rmap->n, cm = C->rmap->n, pon = (p->B)->cmap->n;
1581ce94432eSBarry Smith   MPI_Comm             comm;
15826497c311SBarry Smith   PetscMPIInt          size, rank, taga, *len_s, proc;
15836497c311SBarry Smith   PetscInt            *owners, nrows, **buf_ri_k, **nextrow, **nextci;
1584d6ab1dc0SHong Zhang   PetscInt           **buf_ri, **buf_rj;
1585d6ab1dc0SHong Zhang   PetscInt             cnz = 0, *bj_i, *bi, *bj, bnz, nextcj; /* bi,bj,ba: local array of C(mpi mat) */
1586d6ab1dc0SHong Zhang   MPI_Request         *s_waits, *r_waits;
1587d6ab1dc0SHong Zhang   MPI_Status          *status;
1588d6ab1dc0SHong Zhang   MatScalar          **abuf_r, *ba_i, *pA, *coa, *ba;
1589ce496241SStefano Zampini   const PetscScalar   *dummy;
15904e201bd7SHong Zhang   PetscInt            *ai, *aj, *coi, *coj, *poJ, *pdJ;
1591d6ab1dc0SHong Zhang   Mat                  A_loc;
1592d6ab1dc0SHong Zhang   Mat_SeqAIJ          *a_loc;
1593d6ab1dc0SHong Zhang 
1594d6ab1dc0SHong Zhang   PetscFunctionBegin;
15956718818eSStefano Zampini   MatCheckProduct(C, 3);
1596cc1eb50dSBarry Smith   ap = (MatProductCtx_APMPI *)C->product->data;
15971cdffd5eSHong Zhang   PetscCheck(ap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be computed. Missing data");
15981cdffd5eSHong Zhang   PetscCheck(ap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
15999566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
16009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
16019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1602d6ab1dc0SHong Zhang 
16031cdffd5eSHong Zhang   merge = ap->merge;
1604d6ab1dc0SHong Zhang 
1605e745005bSHong Zhang   /* 2) compute numeric C_seq = P_loc^T*A_loc */
1606d6ab1dc0SHong Zhang   /* get data from symbolic products */
16079371c9d4SSatish Balay   coi = merge->coi;
16089371c9d4SSatish Balay   coj = merge->coj;
160984648c2dSPierre Jolivet   PetscCall(PetscCalloc1(coi[pon], &coa));
16109371c9d4SSatish Balay   bi     = merge->bi;
16119371c9d4SSatish Balay   bj     = merge->bj;
1612d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
161384648c2dSPierre Jolivet   PetscCall(PetscCalloc1(bi[cm], &ba));
1614d6ab1dc0SHong Zhang 
1615d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
16161cdffd5eSHong Zhang   A_loc = ap->A_loc;
16179566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &A_loc));
161857508eceSPierre Jolivet   a_loc = (Mat_SeqAIJ *)A_loc->data;
1619d6ab1dc0SHong Zhang   ai    = a_loc->i;
1620d6ab1dc0SHong Zhang   aj    = a_loc->j;
1621d6ab1dc0SHong Zhang 
1622ce496241SStefano Zampini   /* trigger copy to CPU */
16239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &dummy));
16249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &dummy));
16259566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &dummy));
16269566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &dummy));
1627d6ab1dc0SHong Zhang   for (i = 0; i < am; i++) {
1628d6ab1dc0SHong Zhang     anz = ai[i + 1] - ai[i];
1629d6ab1dc0SHong Zhang     adj = aj + ai[i];
1630d6ab1dc0SHong Zhang     ada = a_loc->a + ai[i];
1631d6ab1dc0SHong Zhang 
1632d6ab1dc0SHong Zhang     /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */
1633d6ab1dc0SHong Zhang     /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */
1634d6ab1dc0SHong Zhang     pnz = po->i[i + 1] - po->i[i];
1635d6ab1dc0SHong Zhang     poJ = po->j + po->i[i];
1636d6ab1dc0SHong Zhang     pA  = po->a + po->i[i];
1637d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1638d6ab1dc0SHong Zhang       row = poJ[j];
1639d6ab1dc0SHong Zhang       cj  = coj + coi[row];
1640d6ab1dc0SHong Zhang       ca  = coa + coi[row];
1641e745005bSHong Zhang       /* perform sparse axpy */
1642e745005bSHong Zhang       nexta  = 0;
1643d6ab1dc0SHong Zhang       valtmp = pA[j];
1644e745005bSHong Zhang       for (k = 0; nexta < anz; k++) {
1645e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1646e745005bSHong Zhang           ca[k] += valtmp * ada[nexta];
1647e745005bSHong Zhang           nexta++;
1648d6ab1dc0SHong Zhang         }
1649e745005bSHong Zhang       }
16509566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * anz));
1651d6ab1dc0SHong Zhang     }
1652d6ab1dc0SHong Zhang 
1653d6ab1dc0SHong Zhang     /* put the value into Cd (diagonal part) */
1654d6ab1dc0SHong Zhang     pnz = pd->i[i + 1] - pd->i[i];
1655d6ab1dc0SHong Zhang     pdJ = pd->j + pd->i[i];
1656d6ab1dc0SHong Zhang     pA  = pd->a + pd->i[i];
1657d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1658d6ab1dc0SHong Zhang       row = pdJ[j];
1659d6ab1dc0SHong Zhang       cj  = bj + bi[row];
1660d6ab1dc0SHong Zhang       ca  = ba + bi[row];
1661e745005bSHong Zhang       /* perform sparse axpy */
1662e745005bSHong Zhang       nexta  = 0;
1663d6ab1dc0SHong Zhang       valtmp = pA[j];
1664e745005bSHong Zhang       for (k = 0; nexta < anz; k++) {
1665e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1666e745005bSHong Zhang           ca[k] += valtmp * ada[nexta];
1667e745005bSHong Zhang           nexta++;
1668d6ab1dc0SHong Zhang         }
1669e745005bSHong Zhang       }
16709566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * anz));
1671d6ab1dc0SHong Zhang     }
1672d6ab1dc0SHong Zhang   }
1673d6ab1dc0SHong Zhang 
1674d6ab1dc0SHong Zhang   /* 3) send and recv matrix values coa */
1675d6ab1dc0SHong Zhang   buf_ri = merge->buf_ri;
1676d6ab1dc0SHong Zhang   buf_rj = merge->buf_rj;
1677d6ab1dc0SHong Zhang   len_s  = merge->len_s;
16789566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &taga));
16799566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
1680d6ab1dc0SHong Zhang 
168184648c2dSPierre Jolivet   PetscCall(PetscMalloc2(merge->nsend, &s_waits, size, &status));
1682d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1683d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1684d6ab1dc0SHong Zhang     i = merge->owners_co[proc];
16856497c311SBarry Smith     PetscCallMPI(MPIU_Isend(coa + coi[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
1686d6ab1dc0SHong Zhang     k++;
1687d6ab1dc0SHong Zhang   }
16889566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
16899566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
1690d6ab1dc0SHong Zhang 
16919566063dSJacob Faibussowitsch   PetscCall(PetscFree2(s_waits, status));
16929566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
16939566063dSJacob Faibussowitsch   PetscCall(PetscFree(coa));
1694d6ab1dc0SHong Zhang 
1695d6ab1dc0SHong Zhang   /* 4) insert local Cseq and received values into Cmpi */
16969566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1697d6ab1dc0SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
1698e745005bSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1699f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
1700d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
1701a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1702d6ab1dc0SHong Zhang   }
1703d6ab1dc0SHong Zhang 
1704d6ab1dc0SHong Zhang   for (i = 0; i < cm; i++) {
1705d6ab1dc0SHong Zhang     row  = owners[rank] + i; /* global row index of C_seq */
1706d6ab1dc0SHong Zhang     bj_i = bj + bi[i];       /* col indices of the i-th row of C */
1707d6ab1dc0SHong Zhang     ba_i = ba + bi[i];
1708d6ab1dc0SHong Zhang     bnz  = bi[i + 1] - bi[i];
1709d6ab1dc0SHong Zhang     /* add received vals into ba */
1710d6ab1dc0SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
1711d6ab1dc0SHong Zhang       /* i-th row */
1712d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {
1713d6ab1dc0SHong Zhang         cnz    = *(nextci[k] + 1) - *nextci[k];
1714f4f49eeaSPierre Jolivet         cj     = buf_rj[k] + *nextci[k];
1715f4f49eeaSPierre Jolivet         ca     = abuf_r[k] + *nextci[k];
1716d6ab1dc0SHong Zhang         nextcj = 0;
1717d6ab1dc0SHong Zhang         for (j = 0; nextcj < cnz; j++) {
1718d6ab1dc0SHong Zhang           if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */
1719d6ab1dc0SHong Zhang             ba_i[j] += ca[nextcj++];
1720d6ab1dc0SHong Zhang           }
1721d6ab1dc0SHong Zhang         }
17229371c9d4SSatish Balay         nextrow[k]++;
17239371c9d4SSatish Balay         nextci[k]++;
17249566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * cnz));
1725d6ab1dc0SHong Zhang       }
1726d6ab1dc0SHong Zhang     }
17279566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, bnz, bj_i, ba_i, INSERT_VALUES));
1728d6ab1dc0SHong Zhang   }
17299566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
17309566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
1731d6ab1dc0SHong Zhang 
17329566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba));
17339566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
17349566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
17359566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
17363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1737d6ab1dc0SHong Zhang }
1738d6ab1dc0SHong Zhang 
1739d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P, Mat A, PetscReal fill, Mat C)
1740d71ae5a4SJacob Faibussowitsch {
1741b419842dSStefano Zampini   Mat                  A_loc;
1742cc1eb50dSBarry Smith   MatProductCtx_APMPI *ap;
17430298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
17446718818eSStefano Zampini   Mat_MPIAIJ          *p = (Mat_MPIAIJ *)P->data, *a = (Mat_MPIAIJ *)A->data;
1745d6ab1dc0SHong Zhang   PetscInt            *pdti, *pdtj, *poti, *potj, *ptJ;
1746d6ab1dc0SHong Zhang   PetscInt             nnz;
1747d6ab1dc0SHong Zhang   PetscInt            *lnk, *owners_co, *coi, *coj, i, k, pnz, row;
1748d6ab1dc0SHong Zhang   PetscInt             am = A->rmap->n, pn = P->cmap->n;
1749ce94432eSBarry Smith   MPI_Comm             comm;
17506497c311SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_si, *len_s, *len_ri, proc;
1751d6ab1dc0SHong Zhang   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
17526497c311SBarry Smith   PetscInt             len, *dnz, *onz, *owners;
1753d6ab1dc0SHong Zhang   PetscInt             nzi, *bi, *bj;
1754d6ab1dc0SHong Zhang   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1755d6ab1dc0SHong Zhang   MPI_Request         *swaits, *rwaits;
1756d6ab1dc0SHong Zhang   MPI_Status          *sstatus, rstatus;
1757cc1eb50dSBarry Smith   MatMergeSeqsToMPI   *merge;
1758d6ab1dc0SHong Zhang   PetscInt            *ai, *aj, *Jptr, anz, *prmap = p->garray, pon, nspacedouble = 0, j;
1759d6ab1dc0SHong Zhang   PetscReal            afill  = 1.0, afill_tmp;
1760eec179cfSJacob Faibussowitsch   PetscInt             rstart = P->cmap->rstart, rmax, Armax;
1761b419842dSStefano Zampini   Mat_SeqAIJ          *a_loc;
1762eec179cfSJacob Faibussowitsch   PetscHMapI           ta;
1763b92f168fSBarry Smith   MatType              mtype;
1764d6ab1dc0SHong Zhang 
1765d6ab1dc0SHong Zhang   PetscFunctionBegin;
17669566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1767d6ab1dc0SHong Zhang   /* check if matrix local sizes are compatible */
17689371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart,
17699371c9d4SSatish Balay              A->rmap->rend, P->rmap->rstart, P->rmap->rend);
1770d6ab1dc0SHong Zhang 
17719566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
17729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1773d6ab1dc0SHong Zhang 
1774cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
17751cdffd5eSHong Zhang   PetscCall(PetscNew(&ap));
1776d6ab1dc0SHong Zhang 
1777d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
17789566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &A_loc));
17792205254eSKarl Rupp 
17801cdffd5eSHong Zhang   ap->A_loc = A_loc;
178157508eceSPierre Jolivet   a_loc     = (Mat_SeqAIJ *)A_loc->data;
1782d6ab1dc0SHong Zhang   ai        = a_loc->i;
1783d6ab1dc0SHong Zhang   aj        = a_loc->j;
1784d6ab1dc0SHong Zhang 
1785d6ab1dc0SHong Zhang   /* determine symbolic Co=(p->B)^T*A - send to others */
17869566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
17879566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
1788d6ab1dc0SHong Zhang   pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors
1789d6ab1dc0SHong Zhang                          >= (num of nonzero rows of C_seq) - pn */
17909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pon + 1, &coi));
1791d6ab1dc0SHong Zhang   coi[0] = 0;
1792d6ab1dc0SHong Zhang 
1793d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */
1794f91af8c7SBarry Smith   nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(poti[pon], ai[am]));
17959566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1796d6ab1dc0SHong Zhang   current_space = free_space;
179719f0e57aSHong Zhang 
1798d6ab1dc0SHong Zhang   /* create and initialize a linked list */
1799eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(A->cmap->n + a->B->cmap->N, &ta));
18004b38b95cSHong Zhang   MatRowMergeMax_SeqAIJ(a_loc, am, ta);
1801eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Armax));
180233ba5e2fSHong Zhang 
18039566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1804d6ab1dc0SHong Zhang 
1805d6ab1dc0SHong Zhang   for (i = 0; i < pon; i++) {
1806d6ab1dc0SHong Zhang     pnz = poti[i + 1] - poti[i];
1807d6ab1dc0SHong Zhang     ptJ = potj + poti[i];
1808d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1809d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of A_loc == col of Pot */
1810d6ab1dc0SHong Zhang       anz  = ai[row + 1] - ai[row];
1811d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1812d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
18139566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1814d6ab1dc0SHong Zhang     }
1815d6ab1dc0SHong Zhang     nnz = lnk[0];
1816d6ab1dc0SHong Zhang 
1817d6ab1dc0SHong Zhang     /* If free space is not available, double the total space in the list */
1818d6ab1dc0SHong Zhang     if (current_space->local_remaining < nnz) {
18199566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), &current_space));
1820d6ab1dc0SHong Zhang       nspacedouble++;
1821d6ab1dc0SHong Zhang     }
1822d6ab1dc0SHong Zhang 
1823d6ab1dc0SHong Zhang     /* Copy data into free space, and zero out denserows */
18249566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
18252205254eSKarl Rupp 
1826d6ab1dc0SHong Zhang     current_space->array += nnz;
1827d6ab1dc0SHong Zhang     current_space->local_used += nnz;
1828d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
18292205254eSKarl Rupp 
1830d6ab1dc0SHong Zhang     coi[i + 1] = coi[i] + nnz;
1831d6ab1dc0SHong Zhang   }
1832d6ab1dc0SHong Zhang 
183384648c2dSPierre Jolivet   PetscCall(PetscMalloc1(coi[pon], &coj));
18349566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, coj));
18359566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */
18362205254eSKarl Rupp 
1837118727c9SMark F. Adams   afill_tmp = (PetscReal)coi[pon] / (poti[pon] + ai[am] + 1);
1838d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
1839d6ab1dc0SHong Zhang 
1840d6ab1dc0SHong Zhang   /* send j-array (coj) of Co to other processors */
1841d6ab1dc0SHong Zhang   /* determine row ownership */
18429566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
18439566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
18442205254eSKarl Rupp 
1845d6ab1dc0SHong Zhang   merge->rowmap->n  = pn;
1846d6ab1dc0SHong Zhang   merge->rowmap->bs = 1;
18472205254eSKarl Rupp 
18489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
1849d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
1850d6ab1dc0SHong Zhang 
1851d6ab1dc0SHong Zhang   /* determine the number of messages to send, their lengths */
18529566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size, &len_si));
18539566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size, &merge->len_s));
18542205254eSKarl Rupp 
1855d6ab1dc0SHong Zhang   len_s        = merge->len_s;
1856d6ab1dc0SHong Zhang   merge->nsend = 0;
1857d6ab1dc0SHong Zhang 
185884648c2dSPierre Jolivet   PetscCall(PetscMalloc1(size + 1, &owners_co));
1859d6ab1dc0SHong Zhang 
1860d6ab1dc0SHong Zhang   proc = 0;
1861d6ab1dc0SHong Zhang   for (i = 0; i < pon; i++) {
1862d6ab1dc0SHong Zhang     while (prmap[i] >= owners[proc + 1]) proc++;
1863d6ab1dc0SHong Zhang     len_si[proc]++; /* num of rows in Co to be sent to [proc] */
1864d6ab1dc0SHong Zhang     len_s[proc] += coi[i + 1] - coi[i];
1865d6ab1dc0SHong Zhang   }
1866d6ab1dc0SHong Zhang 
1867d6ab1dc0SHong Zhang   len          = 0; /* max length of buf_si[] */
1868d6ab1dc0SHong Zhang   owners_co[0] = 0;
1869d6ab1dc0SHong Zhang   for (proc = 0; proc < size; proc++) {
1870d6ab1dc0SHong Zhang     owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1871216f1e5cSPierre Jolivet     if (len_s[proc]) {
1872d6ab1dc0SHong Zhang       merge->nsend++;
1873d6ab1dc0SHong Zhang       len_si[proc] = 2 * (len_si[proc] + 1);
1874d6ab1dc0SHong Zhang       len += len_si[proc];
1875d6ab1dc0SHong Zhang     }
1876d6ab1dc0SHong Zhang   }
1877d6ab1dc0SHong Zhang 
1878d6ab1dc0SHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
18799566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
18809566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
1881d6ab1dc0SHong Zhang 
1882d6ab1dc0SHong Zhang   /* post the Irecv and Isend of coj */
18839566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
18849566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rwaits));
188584648c2dSPierre Jolivet   PetscCall(PetscMalloc1(merge->nsend, &swaits));
1886d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1887d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1888d6ab1dc0SHong Zhang     i = owners_co[proc];
18896497c311SBarry Smith     PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1890d6ab1dc0SHong Zhang     k++;
1891d6ab1dc0SHong Zhang   }
1892d6ab1dc0SHong Zhang 
1893d6ab1dc0SHong Zhang   /* receives and sends of coj are complete */
18949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &sstatus));
1895d6ab1dc0SHong Zhang   for (i = 0; i < merge->nrecv; i++) {
1896ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
18979566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1898d6ab1dc0SHong Zhang   }
18999566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19009566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
1901d6ab1dc0SHong Zhang 
19020acc65b4SHong Zhang   /* add received column indices into table to update Armax */
1903c4762a1bSJed Brown   /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */
19040acc65b4SHong Zhang   for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
19050acc65b4SHong Zhang     Jptr = buf_rj[k];
1906c76ffc5fSJacob Faibussowitsch     for (j = 0; j < merge->len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1));
19070acc65b4SHong Zhang   }
1908eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Armax));
19090acc65b4SHong Zhang 
1910d6ab1dc0SHong Zhang   /* send and recv coi */
19119566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
19129566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &rwaits));
191384648c2dSPierre Jolivet   PetscCall(PetscMalloc1(len, &buf_s));
1914d6ab1dc0SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1915d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1916d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1917d6ab1dc0SHong Zhang     /* form outgoing message for i-structure:
1918d6ab1dc0SHong Zhang          buf_si[0]:                 nrows to be sent
1919d6ab1dc0SHong Zhang                [1:nrows]:           row index (global)
1920d6ab1dc0SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1921d6ab1dc0SHong Zhang     */
1922d6ab1dc0SHong Zhang     nrows       = len_si[proc] / 2 - 1;
1923d6ab1dc0SHong Zhang     buf_si_i    = buf_si + nrows + 1;
1924d6ab1dc0SHong Zhang     buf_si[0]   = nrows;
1925d6ab1dc0SHong Zhang     buf_si_i[0] = 0;
1926d6ab1dc0SHong Zhang     nrows       = 0;
1927d6ab1dc0SHong Zhang     for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1928d6ab1dc0SHong Zhang       nzi                 = coi[i + 1] - coi[i];
1929d6ab1dc0SHong Zhang       buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi;   /* i-structure */
1930d6ab1dc0SHong Zhang       buf_si[nrows + 1]   = prmap[i] - owners[proc]; /* local row index */
1931d6ab1dc0SHong Zhang       nrows++;
1932d6ab1dc0SHong Zhang     }
19336497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1934d6ab1dc0SHong Zhang     k++;
1935d6ab1dc0SHong Zhang     buf_si += len_si[proc];
1936d6ab1dc0SHong Zhang   }
1937d6ab1dc0SHong Zhang   i = merge->nrecv;
1938d6ab1dc0SHong Zhang   while (i--) {
1939ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
19409566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1941d6ab1dc0SHong Zhang   }
19429566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19439566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
19449566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
19459566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
19469566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
19479566063dSJacob Faibussowitsch   PetscCall(PetscFree(sstatus));
19489566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1949d6ab1dc0SHong Zhang 
1950d6ab1dc0SHong Zhang   /* compute the local portion of C (mpi mat) */
1951d6ab1dc0SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
19529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pn + 1, &bi));
1953d6ab1dc0SHong Zhang   bi[0] = 0;
1954d6ab1dc0SHong Zhang 
1955d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(P) + nnz(AP)) */
1956f91af8c7SBarry Smith   nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(pdti[pn], PetscIntSumTruncate(poti[pon], ai[am])));
19579566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1958d6ab1dc0SHong Zhang   current_space = free_space;
1959d6ab1dc0SHong Zhang 
19609566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1961d6ab1dc0SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
1962d6ab1dc0SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1963d6ab1dc0SHong Zhang     nrows       = *buf_ri_k[k];
1964d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
19652d4ee042Sprj-     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure  */
1966d6ab1dc0SHong Zhang   }
1967d6ab1dc0SHong Zhang 
19689566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1969d0609cedSBarry Smith   MatPreallocateBegin(comm, pn, A->cmap->n, dnz, onz);
1970d6ab1dc0SHong Zhang   rmax = 0;
1971d6ab1dc0SHong Zhang   for (i = 0; i < pn; i++) {
1972d6ab1dc0SHong Zhang     /* add pdt[i,:]*AP into lnk */
1973d6ab1dc0SHong Zhang     pnz = pdti[i + 1] - pdti[i];
1974d6ab1dc0SHong Zhang     ptJ = pdtj + pdti[i];
1975d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1976d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of AP == col of Pt */
1977d6ab1dc0SHong Zhang       anz  = ai[row + 1] - ai[row];
1978d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1979d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
19809566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1981d6ab1dc0SHong Zhang     }
1982d6ab1dc0SHong Zhang 
1983d6ab1dc0SHong Zhang     /* add received col data into lnk */
1984d6ab1dc0SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
1985d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
1986d6ab1dc0SHong Zhang         nzi  = *(nextci[k] + 1) - *nextci[k];
1987d6ab1dc0SHong Zhang         Jptr = buf_rj[k] + *nextci[k];
19889566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted_Scalable(nzi, Jptr, lnk));
19899371c9d4SSatish Balay         nextrow[k]++;
19909371c9d4SSatish Balay         nextci[k]++;
1991d6ab1dc0SHong Zhang       }
1992d6ab1dc0SHong Zhang     }
19938c78258cSHong Zhang 
19948c78258cSHong Zhang     /* add missing diagonal entry */
19958c78258cSHong Zhang     if (C->force_diagonals) {
19968c78258cSHong Zhang       k = i + owners[rank]; /* column index */
19979566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1, &k, lnk));
19988c78258cSHong Zhang     }
19998c78258cSHong Zhang 
2000d6ab1dc0SHong Zhang     nnz = lnk[0];
2001d6ab1dc0SHong Zhang 
2002d6ab1dc0SHong Zhang     /* if free space is not available, make more free space */
2003d6ab1dc0SHong Zhang     if (current_space->local_remaining < nnz) {
20049566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), &current_space));
2005d6ab1dc0SHong Zhang       nspacedouble++;
2006d6ab1dc0SHong Zhang     }
2007d6ab1dc0SHong Zhang     /* copy data into free space, then initialize lnk */
20089566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
20099566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], nnz, current_space->array, dnz, onz));
20102205254eSKarl Rupp 
2011d6ab1dc0SHong Zhang     current_space->array += nnz;
2012d6ab1dc0SHong Zhang     current_space->local_used += nnz;
2013d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
20142205254eSKarl Rupp 
2015d6ab1dc0SHong Zhang     bi[i + 1] = bi[i] + nnz;
2016d6ab1dc0SHong Zhang     if (nnz > rmax) rmax = nnz;
2017d6ab1dc0SHong Zhang   }
20189566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
2019d6ab1dc0SHong Zhang 
202084648c2dSPierre Jolivet   PetscCall(PetscMalloc1(bi[pn], &bj));
20219566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
2022118727c9SMark F. Adams   afill_tmp = (PetscReal)bi[pn] / (pdti[pn] + poti[pon] + ai[am] + 1);
2023d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
20249566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
2025eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
20269566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
20279566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
2028d6ab1dc0SHong Zhang 
20294222ddf1SHong Zhang   /* create symbolic parallel matrix C - why cannot be assembled in Numeric part   */
20309566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, pn, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE));
203158b7e2c1SStefano Zampini   PetscCall(MatSetBlockSizes(C, P->cmap->bs, A->cmap->bs));
20329566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
20339566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
20349566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
2035d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
20369566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(C, 1));
20379566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
2038d6ab1dc0SHong Zhang   for (i = 0; i < pn; i++) {
2039d6ab1dc0SHong Zhang     row  = i + rstart;
2040d6ab1dc0SHong Zhang     nnz  = bi[i + 1] - bi[i];
2041d6ab1dc0SHong Zhang     Jptr = bj + bi[i];
20429566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, nnz, Jptr, NULL, INSERT_VALUES));
2043d6ab1dc0SHong Zhang   }
20449566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
20459566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
20469566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
2047d6ab1dc0SHong Zhang   merge->bi        = bi;
2048d6ab1dc0SHong Zhang   merge->bj        = bj;
2049d6ab1dc0SHong Zhang   merge->coi       = coi;
2050d6ab1dc0SHong Zhang   merge->coj       = coj;
2051d6ab1dc0SHong Zhang   merge->buf_ri    = buf_ri;
2052d6ab1dc0SHong Zhang   merge->buf_rj    = buf_rj;
2053d6ab1dc0SHong Zhang   merge->owners_co = owners_co;
2054d6ab1dc0SHong Zhang 
20554222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
20561cdffd5eSHong Zhang   C->product->data    = ap;
2057cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP;
20581cdffd5eSHong Zhang   ap->merge           = merge;
2059a560ef98SHong Zhang 
20604222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ;
2061f96d37fcSHong Zhang 
2062f96d37fcSHong Zhang #if defined(PETSC_USE_INFO)
2063f96d37fcSHong Zhang   if (bi[pn] != 0) {
20649566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
20659566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n", (double)afill));
2066f96d37fcSHong Zhang   } else {
20679566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
2068f96d37fcSHong Zhang   }
2069f96d37fcSHong Zhang #endif
20703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2071f96d37fcSHong Zhang }
20724222ddf1SHong Zhang 
2073d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C)
2074d71ae5a4SJacob Faibussowitsch {
20754222ddf1SHong Zhang   Mat_Product *product = C->product;
20764222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
20774222ddf1SHong Zhang   PetscReal    fill = product->fill;
20784222ddf1SHong Zhang   PetscBool    flg;
20794222ddf1SHong Zhang 
20804222ddf1SHong Zhang   PetscFunctionBegin;
20814222ddf1SHong Zhang   /* scalable */
20829566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "scalable", &flg));
20834222ddf1SHong Zhang   if (flg) {
20849566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
20854222ddf1SHong Zhang     goto next;
20864222ddf1SHong Zhang   }
20874222ddf1SHong Zhang 
20884222ddf1SHong Zhang   /* nonscalable */
20899566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "nonscalable", &flg));
20904222ddf1SHong Zhang   if (flg) {
20919566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
20924222ddf1SHong Zhang     goto next;
20934222ddf1SHong Zhang   }
20944222ddf1SHong Zhang 
20954222ddf1SHong Zhang   /* matmatmult */
20969566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "at*b", &flg));
20974222ddf1SHong Zhang   if (flg) {
20984222ddf1SHong Zhang     Mat                  At;
2099cc1eb50dSBarry Smith     MatProductCtx_APMPI *ptap;
21004222ddf1SHong Zhang 
21019566063dSJacob Faibussowitsch     PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
21029566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At, B, fill, C));
2103cc1eb50dSBarry Smith     ptap = (MatProductCtx_APMPI *)C->product->data;
21044222ddf1SHong Zhang     if (ptap) {
21054222ddf1SHong Zhang       ptap->Pt            = At;
2106cc1eb50dSBarry Smith       C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP;
21074222ddf1SHong Zhang     }
21084222ddf1SHong Zhang     C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult;
21094222ddf1SHong Zhang     goto next;
21104222ddf1SHong Zhang   }
21114222ddf1SHong Zhang 
21124e84afc0SStefano Zampini   /* backend general code */
21139566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "backend", &flg));
21144e84afc0SStefano Zampini   if (flg) {
21159566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
21163ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
21174e84afc0SStefano Zampini   }
21184e84afc0SStefano Zampini 
21194222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type is not supported");
21204222ddf1SHong Zhang 
21214222ddf1SHong Zhang next:
21224222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AtB;
21233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21244222ddf1SHong Zhang }
21254222ddf1SHong Zhang 
21264222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */
2127d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C)
2128d71ae5a4SJacob Faibussowitsch {
21294222ddf1SHong Zhang   Mat_Product *product = C->product;
21304222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
21314222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
21324e84afc0SStefano Zampini   const char *algTypes[5] = {"scalable", "nonscalable", "seqmpi", "backend", "hypre"};
21334e84afc0SStefano Zampini   PetscInt    nalg        = 5;
21344222ddf1SHong Zhang #else
21359371c9d4SSatish Balay   const char *algTypes[4] = {
21369371c9d4SSatish Balay     "scalable",
21379371c9d4SSatish Balay     "nonscalable",
21389371c9d4SSatish Balay     "seqmpi",
21399371c9d4SSatish Balay     "backend",
21409371c9d4SSatish Balay   };
21414e84afc0SStefano Zampini   PetscInt nalg = 4;
21424222ddf1SHong Zhang #endif
21434222ddf1SHong Zhang   PetscInt  alg = 1; /* set nonscalable algorithm as default */
21444222ddf1SHong Zhang   PetscBool flg;
21454222ddf1SHong Zhang   MPI_Comm  comm;
21464222ddf1SHong Zhang 
21474222ddf1SHong Zhang   PetscFunctionBegin;
21489566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
21494222ddf1SHong Zhang 
21504222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
21519566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
21524222ddf1SHong Zhang   if (flg) {
2153835f2295SStefano Zampini     PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
21544222ddf1SHong Zhang 
21554222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
21564222ddf1SHong Zhang     if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
21574222ddf1SHong Zhang       MatInfo   Ainfo, Binfo;
21584222ddf1SHong Zhang       PetscInt  nz_local;
21594222ddf1SHong Zhang       PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
21604222ddf1SHong Zhang 
21619566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
21629566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
21634222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
21644222ddf1SHong Zhang 
21654222ddf1SHong Zhang       if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
21665440e5dcSBarry Smith       PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
21674222ddf1SHong Zhang 
21684222ddf1SHong Zhang       if (alg_scalable) {
21694222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2170835f2295SStefano Zampini         PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
21719566063dSJacob Faibussowitsch         PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
21724222ddf1SHong Zhang       }
21734222ddf1SHong Zhang     }
21744222ddf1SHong Zhang   }
21754222ddf1SHong Zhang 
21764222ddf1SHong Zhang   /* Get runtime option */
21774222ddf1SHong Zhang   if (product->api_user) {
2178d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
21799566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2180d0609cedSBarry Smith     PetscOptionsEnd();
21814222ddf1SHong Zhang   } else {
2182d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
21839566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2184d0609cedSBarry Smith     PetscOptionsEnd();
21854222ddf1SHong Zhang   }
2186835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
21874222ddf1SHong Zhang 
21884222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ;
21893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21904222ddf1SHong Zhang }
21914222ddf1SHong Zhang 
2192d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C)
2193d71ae5a4SJacob Faibussowitsch {
21948a9c020eSBarry Smith   PetscFunctionBegin;
21958a9c020eSBarry Smith   PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
21968a9c020eSBarry Smith   C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ;
21973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21988a9c020eSBarry Smith }
21998a9c020eSBarry Smith 
22004222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */
2201d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C)
2202d71ae5a4SJacob Faibussowitsch {
22034222ddf1SHong Zhang   Mat_Product *product = C->product;
22044222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
22054e84afc0SStefano Zampini   const char  *algTypes[4] = {"scalable", "nonscalable", "at*b", "backend"};
22064e84afc0SStefano Zampini   PetscInt     nalg        = 4;
22074222ddf1SHong Zhang   PetscInt     alg         = 1; /* set default algorithm  */
22084222ddf1SHong Zhang   PetscBool    flg;
22094222ddf1SHong Zhang   MPI_Comm     comm;
22104222ddf1SHong Zhang 
22114222ddf1SHong Zhang   PetscFunctionBegin;
22124222ddf1SHong Zhang   /* Check matrix local sizes */
22139566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22149371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22159371c9d4SSatish Balay              A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
22164222ddf1SHong Zhang 
22174222ddf1SHong Zhang   /* Set default algorithm */
22189566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
2219835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22204222ddf1SHong Zhang 
22214222ddf1SHong Zhang   /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22224222ddf1SHong Zhang   if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
22234222ddf1SHong Zhang     MatInfo   Ainfo, Binfo;
22244222ddf1SHong Zhang     PetscInt  nz_local;
22254222ddf1SHong Zhang     PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
22264222ddf1SHong Zhang 
22279566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
22289566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
22294222ddf1SHong Zhang     nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22304222ddf1SHong Zhang 
22314222ddf1SHong Zhang     if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
22325440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
22334222ddf1SHong Zhang 
22344222ddf1SHong Zhang     if (alg_scalable) {
22354222ddf1SHong Zhang       alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2236835f2295SStefano Zampini       PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22379566063dSJacob Faibussowitsch       PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
22384222ddf1SHong Zhang     }
22394222ddf1SHong Zhang   }
22404222ddf1SHong Zhang 
22414222ddf1SHong Zhang   /* Get runtime option */
22424222ddf1SHong Zhang   if (product->api_user) {
2243d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat");
22449566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2245d0609cedSBarry Smith     PetscOptionsEnd();
22464222ddf1SHong Zhang   } else {
2247d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat");
22489566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2249d0609cedSBarry Smith     PetscOptionsEnd();
22504222ddf1SHong Zhang   }
2251835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22524222ddf1SHong Zhang 
22534222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ;
22543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
22554222ddf1SHong Zhang }
22564222ddf1SHong Zhang 
2257d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C)
2258d71ae5a4SJacob Faibussowitsch {
22594222ddf1SHong Zhang   Mat_Product *product = C->product;
22604222ddf1SHong Zhang   Mat          A = product->A, P = product->B;
22614222ddf1SHong Zhang   MPI_Comm     comm;
22624222ddf1SHong Zhang   PetscBool    flg;
22634222ddf1SHong Zhang   PetscInt     alg = 1; /* set default algorithm */
22644222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
22654e84afc0SStefano Zampini   const char *algTypes[5] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend"};
22664222ddf1SHong Zhang   PetscInt    nalg        = 5;
22674e84afc0SStefano Zampini #else
22684e84afc0SStefano Zampini   const char *algTypes[6] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend", "hypre"};
22694e84afc0SStefano Zampini   PetscInt    nalg        = 6;
22704222ddf1SHong Zhang #endif
22714222ddf1SHong Zhang   PetscInt pN = P->cmap->N;
22724222ddf1SHong Zhang 
22734222ddf1SHong Zhang   PetscFunctionBegin;
22744222ddf1SHong Zhang   /* Check matrix local sizes */
22759566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22769371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22779371c9d4SSatish Balay              A->rmap->rstart, A->rmap->rend, P->rmap->rstart, P->rmap->rend);
22789371c9d4SSatish Balay   PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22799371c9d4SSatish Balay              A->cmap->rstart, A->cmap->rend, P->rmap->rstart, P->rmap->rend);
22804222ddf1SHong Zhang 
22814222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
22829566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
22834222ddf1SHong Zhang   if (flg) {
2284835f2295SStefano Zampini     PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22854222ddf1SHong Zhang 
22864222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22874222ddf1SHong Zhang     if (pN > 100000) {
22884222ddf1SHong Zhang       MatInfo   Ainfo, Pinfo;
22894222ddf1SHong Zhang       PetscInt  nz_local;
22904222ddf1SHong Zhang       PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
22914222ddf1SHong Zhang 
22929566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
22939566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(P, MAT_LOCAL, &Pinfo));
22944222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated);
22954222ddf1SHong Zhang 
22964222ddf1SHong Zhang       if (pN > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
22975440e5dcSBarry Smith       PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
22984222ddf1SHong Zhang 
22994222ddf1SHong Zhang       if (alg_scalable) {
23004222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2301835f2295SStefano Zampini         PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23024222ddf1SHong Zhang       }
23034222ddf1SHong Zhang     }
23044222ddf1SHong Zhang   }
23054222ddf1SHong Zhang 
23064222ddf1SHong Zhang   /* Get runtime option */
23074222ddf1SHong Zhang   if (product->api_user) {
2308d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
23099566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2310d0609cedSBarry Smith     PetscOptionsEnd();
23114222ddf1SHong Zhang   } else {
2312d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
23139566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2314d0609cedSBarry Smith     PetscOptionsEnd();
23154222ddf1SHong Zhang   }
2316835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23174222ddf1SHong Zhang 
23184222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ;
23193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23204222ddf1SHong Zhang }
23214222ddf1SHong Zhang 
2322d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C)
2323d71ae5a4SJacob Faibussowitsch {
23244222ddf1SHong Zhang   Mat_Product *product = C->product;
23254222ddf1SHong Zhang   Mat          A = product->A, R = product->B;
23264222ddf1SHong Zhang 
23274222ddf1SHong Zhang   PetscFunctionBegin;
23284222ddf1SHong Zhang   /* Check matrix local sizes */
23299371c9d4SSatish Balay   PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->n,
23309371c9d4SSatish Balay              A->rmap->n, R->rmap->n, R->cmap->n);
23314222ddf1SHong Zhang 
23324222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ;
23333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23344222ddf1SHong Zhang }
23354222ddf1SHong Zhang 
23364222ddf1SHong Zhang /*
23374222ddf1SHong Zhang  Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm
23384222ddf1SHong Zhang */
2339d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C)
2340d71ae5a4SJacob Faibussowitsch {
23414222ddf1SHong Zhang   Mat_Product *product     = C->product;
23424222ddf1SHong Zhang   PetscBool    flg         = PETSC_FALSE;
23434222ddf1SHong Zhang   PetscInt     alg         = 1; /* default algorithm */
23444222ddf1SHong Zhang   const char  *algTypes[3] = {"scalable", "nonscalable", "seqmpi"};
23454222ddf1SHong Zhang   PetscInt     nalg        = 3;
23464222ddf1SHong Zhang 
23474222ddf1SHong Zhang   PetscFunctionBegin;
23484222ddf1SHong Zhang   /* Set default algorithm */
23499566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
2350835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23514222ddf1SHong Zhang 
23524222ddf1SHong Zhang   /* Get runtime option */
23534222ddf1SHong Zhang   if (product->api_user) {
2354d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat");
23559566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2356d0609cedSBarry Smith     PetscOptionsEnd();
23574222ddf1SHong Zhang   } else {
2358d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat");
23599566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg));
2360d0609cedSBarry Smith     PetscOptionsEnd();
23614222ddf1SHong Zhang   }
2362835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23634222ddf1SHong Zhang 
23644222ddf1SHong Zhang   C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ;
23654222ddf1SHong Zhang   C->ops->productsymbolic    = MatProductSymbolic_ABC;
23663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23674222ddf1SHong Zhang }
23684222ddf1SHong Zhang 
2369d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C)
2370d71ae5a4SJacob Faibussowitsch {
23714222ddf1SHong Zhang   Mat_Product *product = C->product;
23724222ddf1SHong Zhang 
23734222ddf1SHong Zhang   PetscFunctionBegin;
23744222ddf1SHong Zhang   switch (product->type) {
2375d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
2376d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
2377d71ae5a4SJacob Faibussowitsch     break;
2378d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABt:
2379d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C));
2380d71ae5a4SJacob Faibussowitsch     break;
2381d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
2382d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C));
2383d71ae5a4SJacob Faibussowitsch     break;
2384d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_PtAP:
2385d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C));
2386d71ae5a4SJacob Faibussowitsch     break;
2387d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_RARt:
2388d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C));
2389d71ae5a4SJacob Faibussowitsch     break;
2390d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABC:
2391d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C));
2392d71ae5a4SJacob Faibussowitsch     break;
2393d71ae5a4SJacob Faibussowitsch   default:
2394d71ae5a4SJacob Faibussowitsch     break;
23954222ddf1SHong Zhang   }
23963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23974222ddf1SHong Zhang }
2398