xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision 29825010b655ce3f8e1ce5f7b74757bc50ec8a87)
1be1d678aSKris Buschelman 
22499ec78SHong Zhang /*
32499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
42499ec78SHong Zhang           C = A * B
52499ec78SHong Zhang */
6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
8c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
9c6db04a5SJed Brown #include <petscbt.h>
10c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
116291f5a6SHong Zhang /*
126291f5a6SHong Zhang #define DEBUG_MATMATMULT
136291f5a6SHong Zhang  */
141634b032SHong Zhang 
152499ec78SHong Zhang #undef __FUNCT__
162499ec78SHong Zhang #define __FUNCT__ "MatMatMult_MPIAIJ_MPIAIJ"
172499ec78SHong Zhang PetscErrorCode MatMatMult_MPIAIJ_MPIAIJ(Mat A,Mat B,MatReuse scall,PetscReal fill, Mat *C)
182499ec78SHong Zhang {
192499ec78SHong Zhang   PetscErrorCode ierr;
202499ec78SHong Zhang 
212499ec78SHong Zhang   PetscFunctionBegin;
222499ec78SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
23598bc09dSHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
24a1a4e84aSHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C);CHKERRQ(ierr);
25598bc09dSHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
262499ec78SHong Zhang   }
27598bc09dSHong Zhang   ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
28598bc09dSHong Zhang   ierr = (*(*C)->ops->matmultnumeric)(A,B,*C);CHKERRQ(ierr);
29598bc09dSHong Zhang   ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
302499ec78SHong Zhang   PetscFunctionReturn(0);
312499ec78SHong Zhang }
322499ec78SHong Zhang 
33f33d1a9aSHong Zhang #undef __FUNCT__
34776b82aeSLisandro Dalcin #define __FUNCT__ "PetscContainerDestroy_Mat_MatMatMultMPI"
35776b82aeSLisandro Dalcin PetscErrorCode PetscContainerDestroy_Mat_MatMatMultMPI(void *ptr)
36f33d1a9aSHong Zhang {
37f33d1a9aSHong Zhang   PetscErrorCode       ierr;
389649163dSHong Zhang   Mat_MatMatMultMPI    *mult=(Mat_MatMatMultMPI*)ptr;
39f33d1a9aSHong Zhang 
40f33d1a9aSHong Zhang   PetscFunctionBegin;
416bf464f9SBarry Smith   ierr = ISDestroy(&mult->isrowa);CHKERRQ(ierr);
426bf464f9SBarry Smith   ierr = ISDestroy(&mult->isrowb);CHKERRQ(ierr);
436bf464f9SBarry Smith   ierr = ISDestroy(&mult->iscolb);CHKERRQ(ierr);
446bf464f9SBarry Smith   ierr = MatDestroy(&mult->C_seq);CHKERRQ(ierr);
456bf464f9SBarry Smith   ierr = MatDestroy(&mult->A_loc);CHKERRQ(ierr);
466bf464f9SBarry Smith   ierr = MatDestroy(&mult->B_seq);CHKERRQ(ierr);
47f33d1a9aSHong Zhang   ierr = PetscFree(mult);CHKERRQ(ierr);
48f33d1a9aSHong Zhang   PetscFunctionReturn(0);
49f33d1a9aSHong Zhang }
50f33d1a9aSHong Zhang 
51598bc09dSHong Zhang #undef __FUNCT__
52a1a4e84aSHong Zhang #define __FUNCT__ "MatDestroy_MPIAIJ_MatMatMult"
53a1a4e84aSHong Zhang PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(Mat A)
54598bc09dSHong Zhang {
55598bc09dSHong Zhang   PetscErrorCode ierr;
56598bc09dSHong Zhang   Mat_MPIAIJ     *a=(Mat_MPIAIJ*)A->data;
57598bc09dSHong Zhang   Mat_PtAPMPI    *ptap=a->ptap;
58598bc09dSHong Zhang 
59598bc09dSHong Zhang   PetscFunctionBegin;
60598bc09dSHong Zhang   ierr = PetscFree2(ptap->startsj,ptap->startsj_r);CHKERRQ(ierr);
61598bc09dSHong Zhang   ierr = PetscFree(ptap->bufa);CHKERRQ(ierr);
62a1a4e84aSHong Zhang   ierr = MatDestroy(&ptap->P_loc);CHKERRQ(ierr);
63a1a4e84aSHong Zhang   ierr = MatDestroy(&ptap->P_oth);CHKERRQ(ierr);
64a1a4e84aSHong Zhang   ierr = PetscFree(ptap->api);CHKERRQ(ierr);
65a1a4e84aSHong Zhang   ierr = PetscFree(ptap->apj);CHKERRQ(ierr);
66598bc09dSHong Zhang   ierr = PetscFree(ptap->apa);CHKERRQ(ierr);
67598bc09dSHong Zhang   ierr = ptap->destroy(A);CHKERRQ(ierr);
68598bc09dSHong Zhang   ierr = PetscFree(ptap);CHKERRQ(ierr);
69598bc09dSHong Zhang   PetscFunctionReturn(0);
70598bc09dSHong Zhang }
71598bc09dSHong Zhang 
722499ec78SHong Zhang #undef __FUNCT__
73a1a4e84aSHong Zhang #define __FUNCT__ "MatDestroy_MPIAIJ_MatMatMult_32"
74a1a4e84aSHong Zhang PetscErrorCode MatDestroy_MPIAIJ_MatMatMult_32(Mat A)
752499ec78SHong Zhang {
762499ec78SHong Zhang   PetscErrorCode     ierr;
77776b82aeSLisandro Dalcin   PetscContainer     container;
789649163dSHong Zhang   Mat_MatMatMultMPI  *mult=PETSC_NULL;
792499ec78SHong Zhang 
802499ec78SHong Zhang   PetscFunctionBegin;
819649163dSHong Zhang   ierr = PetscObjectQuery((PetscObject)A,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr);
8229825010SHong Zhang   if (!container) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Container does not exist");
83776b82aeSLisandro Dalcin   ierr = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr);
84dce485f0SBarry Smith   A->ops->destroy   = mult->destroy;
85bf0cc555SLisandro Dalcin   A->ops->duplicate = mult->duplicate;
86bf0cc555SLisandro Dalcin   if (A->ops->destroy) {
87992edd73SBarry Smith     ierr = (*A->ops->destroy)(A);CHKERRQ(ierr);
88bf0cc555SLisandro Dalcin   }
89bf0cc555SLisandro Dalcin   ierr = PetscObjectCompose((PetscObject)A,"Mat_MatMatMultMPI",0);CHKERRQ(ierr);
902499ec78SHong Zhang   PetscFunctionReturn(0);
912499ec78SHong Zhang }
922499ec78SHong Zhang 
932499ec78SHong Zhang #undef __FUNCT__
94a1a4e84aSHong Zhang #define __FUNCT__ "MatDuplicate_MPIAIJ_MatMatMult_32"
95a1a4e84aSHong Zhang PetscErrorCode MatDuplicate_MPIAIJ_MatMatMult_32(Mat A, MatDuplicateOption op, Mat *M)
96b9c92825SBarry Smith {
97abf897f8SHong Zhang   PetscErrorCode     ierr;
98abf897f8SHong Zhang   Mat_MatMatMultMPI  *mult;
99776b82aeSLisandro Dalcin   PetscContainer     container;
100abf897f8SHong Zhang 
101abf897f8SHong Zhang   PetscFunctionBegin;
102abf897f8SHong Zhang   ierr = PetscObjectQuery((PetscObject)A,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr);
10329825010SHong Zhang   if (!container) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Container does not exist");
104776b82aeSLisandro Dalcin   ierr  = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr);
1055c088420SHong Zhang   /* Note: the container is not duplicated, because it requires deep copying of
1065c088420SHong Zhang      several large data sets (see PetscContainerDestroy_Mat_MatMatMultMPI()).
1075c088420SHong Zhang      These data sets are only used for repeated calling of MatMatMultNumeric().
1085c088420SHong Zhang      *M is unlikely being used in this way. Thus we create *M with pure mpiaij format */
109dce485f0SBarry Smith   ierr = (*mult->duplicate)(A,op,M);CHKERRQ(ierr);
110dce485f0SBarry Smith   (*M)->ops->destroy   = mult->destroy;   /* = MatDestroy_MPIAIJ, *M doesn't duplicate A's container! */
111dce485f0SBarry Smith   (*M)->ops->duplicate = mult->duplicate; /* = MatDuplicate_MPIAIJ */
112abf897f8SHong Zhang   PetscFunctionReturn(0);
113abf897f8SHong Zhang }
114abf897f8SHong Zhang 
115abf897f8SHong Zhang #undef __FUNCT__
116a1a4e84aSHong Zhang #define __FUNCT__ "MatDuplicate_MPIAIJ_MatMatMult"
117a1a4e84aSHong Zhang PetscErrorCode MatDuplicate_MPIAIJ_MatMatMult(Mat A, MatDuplicateOption op, Mat *M)
1184ae0847bSHong Zhang {
1194ae0847bSHong Zhang   PetscErrorCode     ierr;
1204ae0847bSHong Zhang   Mat_MPIAIJ         *a=(Mat_MPIAIJ*)A->data;
1214ae0847bSHong Zhang   Mat_PtAPMPI        *ptap=a->ptap;
1224ae0847bSHong Zhang 
1234ae0847bSHong Zhang   PetscFunctionBegin;
1244ae0847bSHong Zhang   ierr = (*ptap->duplicate)(A,op,M);CHKERRQ(ierr);
1254ae0847bSHong Zhang   (*M)->ops->destroy   = ptap->destroy;   /* = MatDestroy_MPIAIJ, *M doesn't duplicate A's special structure! */
1264ae0847bSHong Zhang   (*M)->ops->duplicate = ptap->duplicate; /* = MatDuplicate_MPIAIJ */
1274ae0847bSHong Zhang   PetscFunctionReturn(0);
1284ae0847bSHong Zhang }
1294ae0847bSHong Zhang 
1304ae0847bSHong Zhang #undef __FUNCT__
131a1a4e84aSHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ"
132a1a4e84aSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A,Mat P,Mat C)
133598bc09dSHong Zhang {
134598bc09dSHong Zhang   PetscErrorCode     ierr;
1354ae0847bSHong Zhang   Mat_MPIAIJ         *a=(Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data;
136598bc09dSHong Zhang   Mat_SeqAIJ         *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
137598bc09dSHong Zhang   Mat_SeqAIJ         *cd=(Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data;
138598bc09dSHong Zhang   PetscInt           *adi=ad->i,*adj,*aoi=ao->i,*aoj;
139598bc09dSHong Zhang   PetscScalar        *ada,*aoa,*cda=cd->a,*coa=co->a;
140598bc09dSHong Zhang   Mat_SeqAIJ         *p_loc,*p_oth;
141598bc09dSHong Zhang   PetscInt           *pi_loc,*pj_loc,*pi_oth,*pj_oth,*pj;
142598bc09dSHong Zhang   PetscScalar        *pa_loc,*pa_oth,*pa,*apa,valtmp,*ca;
143598bc09dSHong Zhang   PetscInt           cm=C->rmap->n,anz,pnz;
144598bc09dSHong Zhang   Mat_PtAPMPI        *ptap=c->ptap;
14565a57a32SSean Farley   PetscInt           *api,*apj,*apJ,i,j,k,row;
14629825010SHong Zhang   PetscInt           cstart=C->cmap->rstart;
147598bc09dSHong Zhang   PetscInt           cdnz,conz,k0,k1;
1487c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT)
1497c2e2f26SHong Zhang   PetscMPIInt        rank=a->rank;
1507c2e2f26SHong Zhang #endif
151598bc09dSHong Zhang 
152598bc09dSHong Zhang   PetscFunctionBegin;
1537c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT)
1547c2e2f26SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultNumeric_MPIAIJ_MPIAIJ()...\n",rank);
1557c2e2f26SHong Zhang #endif
1567c2e2f26SHong Zhang 
157a1a4e84aSHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
158598bc09dSHong Zhang   /*-----------------------------------------------------*/
159a1a4e84aSHong Zhang   /* update numerical values of P_oth and P_loc */
160a1a4e84aSHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
161a1a4e84aSHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
1626291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
1636291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] got P_oth and P_loc...\n",rank);
1646291f5a6SHong Zhang #endif
165598bc09dSHong Zhang 
166598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
167598bc09dSHong Zhang   /*----------------------------------------------------------*/
168598bc09dSHong Zhang   /* get data from symbolic products */
169a1a4e84aSHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
170a1a4e84aSHong Zhang   p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
171598bc09dSHong Zhang   pi_loc=p_loc->i; pj_loc=p_loc->j; pa_loc=p_loc->a;
172598bc09dSHong Zhang   pi_oth=p_oth->i; pj_oth=p_oth->j; pa_oth=p_oth->a;
173598bc09dSHong Zhang 
174598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
175598bc09dSHong Zhang   apa = ptap->apa;
176598bc09dSHong Zhang 
17729825010SHong Zhang   api = ptap->api;
17829825010SHong Zhang   apj = ptap->apj;
179598bc09dSHong Zhang   for (i=0; i<cm; i++) {
180598bc09dSHong Zhang     /* diagonal portion of A */
181598bc09dSHong Zhang     anz = adi[i+1] - adi[i];
182598bc09dSHong Zhang     adj = ad->j + adi[i];
183598bc09dSHong Zhang     ada = ad->a + adi[i];
184598bc09dSHong Zhang     for (j=0; j<anz; j++) {
185598bc09dSHong Zhang       row = adj[j];
186598bc09dSHong Zhang       pnz = pi_loc[row+1] - pi_loc[row];
187598bc09dSHong Zhang       pj  = pj_loc + pi_loc[row];
188598bc09dSHong Zhang       pa  = pa_loc + pi_loc[row];
189598bc09dSHong Zhang 
190598bc09dSHong Zhang       /* perform dense axpy */
191598bc09dSHong Zhang       valtmp = ada[j];
192598bc09dSHong Zhang       for (k=0; k<pnz; k++){
193598bc09dSHong Zhang         apa[pj[k]] += valtmp*pa[k];
194598bc09dSHong Zhang       }
195598bc09dSHong Zhang       ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr);
196598bc09dSHong Zhang     }
197598bc09dSHong Zhang 
198598bc09dSHong Zhang     /* off-diagonal portion of A */
199598bc09dSHong Zhang     anz = aoi[i+1] - aoi[i];
200598bc09dSHong Zhang     aoj = ao->j + aoi[i];
201598bc09dSHong Zhang     aoa = ao->a + aoi[i];
202598bc09dSHong Zhang     for (j=0; j<anz; j++) {
203598bc09dSHong Zhang       row = aoj[j];
204598bc09dSHong Zhang       pnz = pi_oth[row+1] - pi_oth[row];
205598bc09dSHong Zhang       pj  = pj_oth + pi_oth[row];
206598bc09dSHong Zhang       pa  = pa_oth + pi_oth[row];
207598bc09dSHong Zhang 
208598bc09dSHong Zhang       /* perform dense axpy */
209598bc09dSHong Zhang       valtmp = aoa[j];
210598bc09dSHong Zhang       for (k=0; k<pnz; k++){
211598bc09dSHong Zhang         apa[pj[k]] += valtmp*pa[k];
212598bc09dSHong Zhang       }
213598bc09dSHong Zhang       ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr);
214598bc09dSHong Zhang     }
215598bc09dSHong Zhang 
216598bc09dSHong Zhang     /* set values in C */
217598bc09dSHong Zhang     apJ = apj + api[i];
218598bc09dSHong Zhang     cdnz = cd->i[i+1] - cd->i[i];
219598bc09dSHong Zhang     conz = co->i[i+1] - co->i[i];
220598bc09dSHong Zhang 
221598bc09dSHong Zhang     /* 1st off-diagoanl part of C */
222598bc09dSHong Zhang     ca = coa + co->i[i];
223598bc09dSHong Zhang     k  = 0;
224598bc09dSHong Zhang     for (k0=0; k0<conz; k0++){
225598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
226598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
227598bc09dSHong Zhang       apa[apJ[k]] = 0.0;
228598bc09dSHong Zhang       k++;
229598bc09dSHong Zhang     }
230598bc09dSHong Zhang 
231598bc09dSHong Zhang     /* diagonal part of C */
232598bc09dSHong Zhang     ca = cda + cd->i[i];
233598bc09dSHong Zhang     for (k1=0; k1<cdnz; k1++){
234598bc09dSHong Zhang       ca[k1]      = apa[apJ[k]];
235598bc09dSHong Zhang       apa[apJ[k]] = 0.0;
236598bc09dSHong Zhang       k++;
237598bc09dSHong Zhang     }
238598bc09dSHong Zhang 
239598bc09dSHong Zhang     /* 2nd off-diagoanl part of C */
240598bc09dSHong Zhang     ca = coa + co->i[i];
241598bc09dSHong Zhang     for (; k0<conz; k0++){
242598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
243598bc09dSHong Zhang       apa[apJ[k]] = 0.0;
244598bc09dSHong Zhang       k++;
245598bc09dSHong Zhang     }
246598bc09dSHong Zhang   }
247598bc09dSHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
248598bc09dSHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
249598bc09dSHong Zhang   PetscFunctionReturn(0);
250598bc09dSHong Zhang }
251598bc09dSHong Zhang 
252598bc09dSHong Zhang #undef __FUNCT__
253a1a4e84aSHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ"
254a1a4e84aSHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A,Mat P,PetscReal fill,Mat *C)
255598bc09dSHong Zhang {
256598bc09dSHong Zhang   PetscErrorCode       ierr;
257598bc09dSHong Zhang   MPI_Comm             comm=((PetscObject)A)->comm;
258bfcd1a73SHong Zhang   Mat                  Cmpi;
259598bc09dSHong Zhang   Mat_PtAPMPI          *ptap;
260598bc09dSHong Zhang   PetscFreeSpaceList   free_space=PETSC_NULL,current_space=PETSC_NULL;
2614ae0847bSHong Zhang   Mat_MPIAIJ           *a=(Mat_MPIAIJ*)A->data,*c;
262bfcd1a73SHong Zhang   Mat_SeqAIJ           *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth;
2634ae0847bSHong Zhang   PetscInt             *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz;
2644ae0847bSHong Zhang   PetscInt             *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart;
265bfcd1a73SHong Zhang   PetscInt             nlnk,*lnk,i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi;
266bfcd1a73SHong Zhang   PetscInt             am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n;
267598bc09dSHong Zhang   PetscBT              lnkbt;
268598bc09dSHong Zhang   PetscScalar          *apa;
269bfcd1a73SHong Zhang   PetscReal            afill;
270cf1a0672SHong Zhang   PetscBool            scalable=PETSC_FALSE;
2717c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT)
2727c2e2f26SHong Zhang   PetscMPIInt          rank=a->rank;
2737c2e2f26SHong Zhang #endif
274598bc09dSHong Zhang 
275598bc09dSHong Zhang   PetscFunctionBegin;
276a1a4e84aSHong Zhang   if (A->cmap->rstart != P->rmap->rstart || A->cmap->rend != P->rmap->rend){
277cf1a0672SHong Zhang     SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap->rstart,A->cmap->rend,P->rmap->rstart,P->rmap->rend);
278a1a4e84aSHong Zhang   }
279152983bfSHong Zhang 
280152983bfSHong Zhang   ierr = PetscObjectOptionsBegin((PetscObject)A);CHKERRQ(ierr);
281cf1a0672SHong Zhang 
282cf1a0672SHong Zhang     ierr = PetscOptionsBool("-matmatmult_32","Use a scalable but slower C=A*B","",scalable,&scalable,PETSC_NULL);CHKERRQ(ierr);
283cf1a0672SHong Zhang     if (scalable){
284cf1a0672SHong Zhang       ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ_Scalable_32(A,P,fill,C);;CHKERRQ(ierr);
285a1a4e84aSHong Zhang       PetscFunctionReturn(0);
286a1a4e84aSHong Zhang     }
287cf1a0672SHong Zhang     ierr = PetscOptionsBool("-matmatmult_scalable","Use a scalable but slower C=A*B","",scalable,&scalable,PETSC_NULL);CHKERRQ(ierr);
288cf1a0672SHong Zhang     if (scalable){
28925023028SHong Zhang       ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ_Scalable(A,P,fill,C);;CHKERRQ(ierr);
2901634b032SHong Zhang       PetscFunctionReturn(0);
2911634b032SHong Zhang     }
292152983bfSHong Zhang   ierr = PetscOptionsEnd();CHKERRQ(ierr);
293a1a4e84aSHong Zhang 
2947c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT)
2957c2e2f26SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultSymbolic_MPIAIJ_MPIAIJ()...\n",rank);
2967c2e2f26SHong Zhang #endif
2977c2e2f26SHong Zhang 
298598bc09dSHong Zhang   /* create struct Mat_PtAPMPI and attached it to C later */
299598bc09dSHong Zhang   ierr = PetscNew(Mat_PtAPMPI,&ptap);CHKERRQ(ierr);
300598bc09dSHong Zhang 
301598bc09dSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
302bfcd1a73SHong Zhang   ierr = PetscMalloc(pN*sizeof(PetscScalar),&apa);CHKERRQ(ierr);
303bfcd1a73SHong Zhang   ierr = PetscMemzero(apa,pN*sizeof(PetscScalar));CHKERRQ(ierr);
304598bc09dSHong Zhang   ptap->apa = apa;
3056291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
306e9e4536cSHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] Malloc apa pN %D is done...\n",rank,pN);
3076291f5a6SHong Zhang #endif
308598bc09dSHong Zhang 
309598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
310a1a4e84aSHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
3116291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
3126291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] P_oth is done...\n",rank);
3136291f5a6SHong Zhang #endif
314598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
315a1a4e84aSHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
316598bc09dSHong Zhang 
317a1a4e84aSHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
318a1a4e84aSHong Zhang   p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
319598bc09dSHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j;
320598bc09dSHong Zhang   pi_oth = p_oth->i; pj_oth = p_oth->j;
321598bc09dSHong Zhang 
3226291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
323e9e4536cSHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] P_loc is done, Annz %D * P_locnnz %D = %D...\n",rank,ad->i[am]+ao->i[am],p_loc->rmax,(ad->i[am]+ao->i[am])*p_loc->rmax);
3246291f5a6SHong Zhang #endif
3256291f5a6SHong Zhang 
326598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
327598bc09dSHong Zhang   /*-------------------------------------------------------------------*/
328598bc09dSHong Zhang   ierr  = PetscMalloc((am+2)*sizeof(PetscInt),&api);CHKERRQ(ierr);
329a1a4e84aSHong Zhang   ptap->api = api;
330598bc09dSHong Zhang   api[0]    = 0;
331598bc09dSHong Zhang 
332598bc09dSHong Zhang   /* create and initialize a linked list */
333598bc09dSHong Zhang   nlnk = pN+1;
334598bc09dSHong Zhang   ierr = PetscLLCreate(pN,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr);
335598bc09dSHong Zhang 
336bfcd1a73SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
337bfcd1a73SHong Zhang   ierr = PetscFreeSpaceGet((PetscInt)(fill*(adi[am]+aoi[am]+pi_loc[pm])),&free_space);CHKERRQ(ierr);
338598bc09dSHong Zhang   current_space = free_space;
339598bc09dSHong Zhang 
340598bc09dSHong Zhang   ierr = MatPreallocateInitialize(comm,am,pn,dnz,onz);CHKERRQ(ierr);
341598bc09dSHong Zhang   for (i=0; i<am; i++) {
342598bc09dSHong Zhang     apnz = 0;
343598bc09dSHong Zhang     /* diagonal portion of A */
344598bc09dSHong Zhang     nzi = adi[i+1] - adi[i];
345598bc09dSHong Zhang     for (j=0; j<nzi; j++){
346598bc09dSHong Zhang       row = *adj++;
347598bc09dSHong Zhang       pnz = pi_loc[row+1] - pi_loc[row];
348598bc09dSHong Zhang       Jptr  = pj_loc + pi_loc[row];
349598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
350dadf0e6bSHong Zhang       ierr = PetscLLAddSorted(pnz,Jptr,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr);
351598bc09dSHong Zhang       apnz += nlnk;
352598bc09dSHong Zhang     }
353598bc09dSHong Zhang     /* off-diagonal portion of A */
354598bc09dSHong Zhang     nzi = aoi[i+1] - aoi[i];
355598bc09dSHong Zhang     for (j=0; j<nzi; j++){
356598bc09dSHong Zhang       row = *aoj++;
357598bc09dSHong Zhang       pnz = pi_oth[row+1] - pi_oth[row];
358598bc09dSHong Zhang       Jptr  = pj_oth + pi_oth[row];
359dadf0e6bSHong Zhang       ierr = PetscLLAddSorted(pnz,Jptr,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr);
360598bc09dSHong Zhang       apnz += nlnk;
361598bc09dSHong Zhang     }
362598bc09dSHong Zhang 
363598bc09dSHong Zhang     api[i+1] = api[i] + apnz;
364598bc09dSHong Zhang 
365598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
366598bc09dSHong Zhang     if (current_space->local_remaining<apnz) {
367598bc09dSHong Zhang       ierr = PetscFreeSpaceGet(apnz+current_space->total_array_size,&current_space);CHKERRQ(ierr);
368598bc09dSHong Zhang       nspacedouble++;
369598bc09dSHong Zhang     }
370598bc09dSHong Zhang 
371598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
372598bc09dSHong Zhang     ierr = PetscLLClean(pN,pN,apnz,lnk,current_space->array,lnkbt);CHKERRQ(ierr);
373598bc09dSHong Zhang     ierr = MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz);CHKERRQ(ierr);
374598bc09dSHong Zhang     current_space->array           += apnz;
375598bc09dSHong Zhang     current_space->local_used      += apnz;
376598bc09dSHong Zhang     current_space->local_remaining -= apnz;
377598bc09dSHong Zhang   }
378598bc09dSHong Zhang 
379598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
380598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
381a1a4e84aSHong Zhang   ierr = PetscMalloc((api[am]+1)*sizeof(PetscInt),&ptap->apj);CHKERRQ(ierr);
382a1a4e84aSHong Zhang   apj  = ptap->apj;
383a1a4e84aSHong Zhang   ierr = PetscFreeSpaceContiguous(&free_space,ptap->apj);CHKERRQ(ierr);
384598bc09dSHong Zhang   ierr = PetscLLDestroy(lnk,lnkbt);CHKERRQ(ierr);
3856291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
3866291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] AP is done...\n",rank);
3876291f5a6SHong Zhang #endif
388598bc09dSHong Zhang 
389bfcd1a73SHong Zhang   /* create and assemble symbolic parallel matrix Cmpi */
390598bc09dSHong Zhang   /*----------------------------------------------------*/
391bfcd1a73SHong Zhang   ierr = MatCreate(comm,&Cmpi);CHKERRQ(ierr);
392bfcd1a73SHong Zhang   ierr = MatSetSizes(Cmpi,am,pn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
393bfcd1a73SHong Zhang   ierr = MatSetType(Cmpi,MATMPIAIJ);CHKERRQ(ierr);
394bfcd1a73SHong Zhang   ierr = MatMPIAIJSetPreallocation(Cmpi,0,dnz,0,onz);CHKERRQ(ierr);
395598bc09dSHong Zhang   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
396bfcd1a73SHong Zhang   ierr = MatSetBlockSize(Cmpi,1);CHKERRQ(ierr);
397598bc09dSHong Zhang   for (i=0; i<am; i++){
398598bc09dSHong Zhang     row  = i + rstart;
399598bc09dSHong Zhang     apnz = api[i+1] - api[i];
400bfcd1a73SHong Zhang     ierr = MatSetValues(Cmpi,1,&row,apnz,apj,apa,INSERT_VALUES);CHKERRQ(ierr);
401598bc09dSHong Zhang     apj += apnz;
402598bc09dSHong Zhang   }
403bfcd1a73SHong Zhang   ierr = MatAssemblyBegin(Cmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
404bfcd1a73SHong Zhang   ierr = MatAssemblyEnd(Cmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
405598bc09dSHong Zhang 
406bfcd1a73SHong Zhang   ptap->destroy             = Cmpi->ops->destroy;
407bfcd1a73SHong Zhang   ptap->duplicate           = Cmpi->ops->duplicate;
408bfcd1a73SHong Zhang   Cmpi->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
409bfcd1a73SHong Zhang   Cmpi->ops->destroy        = MatDestroy_MPIAIJ_MatMatMult;
410bfcd1a73SHong Zhang   Cmpi->ops->duplicate      = MatDuplicate_MPIAIJ_MatMatMult;
411598bc09dSHong Zhang 
412bfcd1a73SHong Zhang   /* attach the supporting struct to Cmpi for reuse */
413bfcd1a73SHong Zhang   c = (Mat_MPIAIJ*)Cmpi->data;
414598bc09dSHong Zhang   c->ptap  = ptap;
415598bc09dSHong Zhang 
416bfcd1a73SHong Zhang   *C = Cmpi;
417bfcd1a73SHong Zhang 
418bfcd1a73SHong Zhang   /* set MatInfo */
419bfcd1a73SHong Zhang   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]) + 1.e-5;
420bfcd1a73SHong Zhang   if (afill < 1.0) afill = 1.0;
421bfcd1a73SHong Zhang   Cmpi->info.mallocs           = nspacedouble;
422bfcd1a73SHong Zhang   Cmpi->info.fill_ratio_given  = fill;
423bfcd1a73SHong Zhang   Cmpi->info.fill_ratio_needed = afill;
424bfcd1a73SHong Zhang 
425bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
426bfcd1a73SHong Zhang   if (api[am]) {
427bfcd1a73SHong Zhang     ierr = PetscInfo3(Cmpi,"Reallocs %D; Fill ratio: given %G needed %G.\n",nspacedouble,fill,afill);CHKERRQ(ierr);
428bfcd1a73SHong Zhang     ierr = PetscInfo1(Cmpi,"Use MatMatMult(A,B,MatReuse,%G,&C) for best performance.;\n",afill);CHKERRQ(ierr);
429bfcd1a73SHong Zhang   } else {
430bfcd1a73SHong Zhang     ierr = PetscInfo(Cmpi,"Empty matrix product\n");CHKERRQ(ierr);
431bfcd1a73SHong Zhang   }
432bfcd1a73SHong Zhang #endif
433598bc09dSHong Zhang   PetscFunctionReturn(0);
434598bc09dSHong Zhang }
435598bc09dSHong Zhang 
436a1a4e84aSHong Zhang /* implementation used in PETSc-3.2 */
437a1a4e84aSHong Zhang /* This routine is called ONLY in the case of reusing previously computed symbolic C */
438598bc09dSHong Zhang #undef __FUNCT__
439cf1a0672SHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ_Scalable_32"
440cf1a0672SHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_Scalable_32(Mat A,Mat B,Mat C)
441a1a4e84aSHong Zhang {
442a1a4e84aSHong Zhang   PetscErrorCode     ierr;
443a1a4e84aSHong Zhang   Mat                *seq;
444a1a4e84aSHong Zhang   Mat_MatMatMultMPI  *mult;
445a1a4e84aSHong Zhang   PetscContainer     container;
446a1a4e84aSHong Zhang 
447a1a4e84aSHong Zhang   PetscFunctionBegin;
44815f4e0f4SHong Zhang   ierr = PetscObjectQuery((PetscObject)C,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr);
44929825010SHong Zhang   if (!container) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Container does not exist");
45015f4e0f4SHong Zhang   ierr  = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr);
45115f4e0f4SHong Zhang 
45215f4e0f4SHong Zhang   if (mult->skipNumeric){ /* first numeric product is done during symbolic product */
45315f4e0f4SHong Zhang     mult->skipNumeric = PETSC_FALSE;
45415f4e0f4SHong Zhang     PetscFunctionReturn(0);
45515f4e0f4SHong Zhang   }
4567c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT)
4577c2e2f26SHong Zhang   PetscMPIInt rank;
458fe615159SHong Zhang   MPI_Comm    comm = ((PetscObject)C)->comm;
459fe615159SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
460fe615159SHong Zhang   ierr = MPI_Barrier(comm);CHKERRQ(ierr);
461cf1a0672SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultNumeric_MPIAIJ_MPIAIJ_Scalable_32()...\n",rank);
4627c2e2f26SHong Zhang #endif
46315f4e0f4SHong Zhang 
464a1a4e84aSHong Zhang   seq = &mult->B_seq;
465a1a4e84aSHong Zhang   ierr = MatGetSubMatrices(B,1,&mult->isrowb,&mult->iscolb,MAT_REUSE_MATRIX,&seq);CHKERRQ(ierr);
466a1a4e84aSHong Zhang   mult->B_seq = *seq;
467a1a4e84aSHong Zhang 
468a1a4e84aSHong Zhang   seq = &mult->A_loc;
469a1a4e84aSHong Zhang   ierr = MatGetSubMatrices(A,1,&mult->isrowa,&mult->isrowb,MAT_REUSE_MATRIX,&seq);CHKERRQ(ierr);
470a1a4e84aSHong Zhang   mult->A_loc = *seq;
471a1a4e84aSHong Zhang 
47225023028SHong Zhang   ierr = MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable(mult->A_loc,mult->B_seq,mult->C_seq);CHKERRQ(ierr);
473a1a4e84aSHong Zhang 
474a1a4e84aSHong Zhang   ierr = PetscObjectReference((PetscObject)mult->C_seq);CHKERRQ(ierr);
475a1a4e84aSHong Zhang   ierr = MatMerge(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr);
476a1a4e84aSHong Zhang   PetscFunctionReturn(0);
477a1a4e84aSHong Zhang }
478a1a4e84aSHong Zhang 
4797c2e2f26SHong Zhang /* numeric product is computed as well */
480a1a4e84aSHong Zhang #undef __FUNCT__
481cf1a0672SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ_Scalable_32"
482cf1a0672SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_Scalable_32(Mat A,Mat B,PetscReal fill,Mat *C)
4832499ec78SHong Zhang {
4842499ec78SHong Zhang   PetscErrorCode     ierr;
4852499ec78SHong Zhang   Mat_MatMatMultMPI  *mult;
486776b82aeSLisandro Dalcin   PetscContainer     container;
487d5821860SHong Zhang   Mat                AB,*seq;
488d5821860SHong Zhang   Mat_MPIAIJ         *a=(Mat_MPIAIJ*)A->data;
489d5821860SHong Zhang   PetscInt           *idx,i,start,ncols,nzA,nzB,*cmap,imark;
4907c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT)
491e9e4536cSHong Zhang   MPI_Comm             comm = ((PetscObject)A)->comm;
4927c2e2f26SHong Zhang   PetscMPIInt          rank=a->rank;
4937c2e2f26SHong Zhang #endif
4942499ec78SHong Zhang 
4952499ec78SHong Zhang   PetscFunctionBegin;
4967c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT)
497cf1a0672SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultSymbolic_MPIAIJ_MPIAIJ_Scalable_32()...\n",rank);
4987c2e2f26SHong Zhang #endif
499d0f46423SBarry Smith   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend){
500cf1a0672SHong Zhang     SETERRQ4(((PetscObject)A)->comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap->rstart,A->cmap->rend,B->rmap->rstart,B->rmap->rend);
5012499ec78SHong Zhang   }
502598bc09dSHong Zhang 
5032499ec78SHong Zhang   ierr = PetscNew(Mat_MatMatMultMPI,&mult);CHKERRQ(ierr);
5042499ec78SHong Zhang 
505d5821860SHong Zhang   /* get isrowb: nonzero col of A */
506d5821860SHong Zhang   start = A->cmap->rstart;
507d5821860SHong Zhang   cmap  = a->garray;
508d5821860SHong Zhang   nzA   = a->A->cmap->n;
509d5821860SHong Zhang   nzB   = a->B->cmap->n;
510d5821860SHong Zhang   ierr  = PetscMalloc((nzA+nzB)*sizeof(PetscInt), &idx);CHKERRQ(ierr);
511d5821860SHong Zhang   ncols = 0;
512d5821860SHong Zhang   for (i=0; i<nzB; i++) {  /* row < local row index */
513d5821860SHong Zhang     if (cmap[i] < start) idx[ncols++] = cmap[i];
514d5821860SHong Zhang     else break;
515d5821860SHong Zhang   }
516d5821860SHong Zhang   imark = i;
517d5821860SHong Zhang   for (i=0; i<nzA; i++) idx[ncols++] = start + i;  /* local rows */
518d5821860SHong Zhang   for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
519d5821860SHong Zhang   ierr = ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,PETSC_OWN_POINTER,&mult->isrowb);CHKERRQ(ierr);
520d5821860SHong Zhang   ierr = ISCreateStride(PETSC_COMM_SELF,B->cmap->N,0,1,&mult->iscolb);CHKERRQ(ierr);
521d5821860SHong Zhang 
522d5821860SHong Zhang   /*  get isrowa: all local rows of A */
523d5821860SHong Zhang   ierr = ISCreateStride(PETSC_COMM_SELF,A->rmap->n,A->rmap->rstart,1,&mult->isrowa);CHKERRQ(ierr);
524d5821860SHong Zhang 
525d5821860SHong Zhang   /* Below should go to MatMatMultNumeric_MPIAIJ_MPIAIJ() - How to generate C there? */
5262499ec78SHong Zhang   /* create a seq matrix B_seq = submatrix of B by taking rows of B that equal to nonzero col of A */
527d5821860SHong Zhang   ierr = MatGetSubMatrices(B,1,&mult->isrowb,&mult->iscolb,MAT_INITIAL_MATRIX,&seq);CHKERRQ(ierr);
528d5821860SHong Zhang   mult->B_seq = *seq;
529d5821860SHong Zhang   ierr = PetscFree(seq);CHKERRQ(ierr);
5306291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
5316291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] B_seq is done...\n",rank);
5326291f5a6SHong Zhang #endif
5332499ec78SHong Zhang 
5342499ec78SHong Zhang   /*  create a seq matrix A_seq = submatrix of A by taking all local rows of A */
535d5821860SHong Zhang   ierr = MatGetSubMatrices(A,1,&mult->isrowa,&mult->isrowb,MAT_INITIAL_MATRIX,&seq);CHKERRQ(ierr);
536d5821860SHong Zhang   mult->A_loc = *seq;
537d5821860SHong Zhang   ierr = PetscFree(seq);CHKERRQ(ierr);
5386291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
539e9e4536cSHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] A_loc is done...\n",rank);
5406291f5a6SHong Zhang #endif
5412499ec78SHong Zhang 
5422499ec78SHong Zhang   /* compute C_seq = A_seq * B_seq */
54325023028SHong Zhang   ierr = MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable(mult->A_loc,mult->B_seq,fill,&mult->C_seq);CHKERRQ(ierr);
5446291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
545e9e4536cSHong Zhang   ierr = MPI_Barrier(comm);CHKERRQ(ierr);
546e9e4536cSHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] C_seq Symbolic is done...\n",rank);
547e9e4536cSHong Zhang #endif
54825023028SHong Zhang   ierr = MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable(mult->A_loc,mult->B_seq,mult->C_seq);CHKERRQ(ierr);
549e9e4536cSHong Zhang #if defined(DEBUG_MATMATMULT)
550e9e4536cSHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] C_seq Numeric is done...\n",rank);
5516291f5a6SHong Zhang #endif
5522499ec78SHong Zhang 
5532499ec78SHong Zhang   /* create mpi matrix C by concatinating C_seq */
5542499ec78SHong Zhang   ierr = PetscObjectReference((PetscObject)mult->C_seq);CHKERRQ(ierr); /* prevent C_seq being destroyed by MatMerge() */
555*9b8102ccSHong Zhang   ierr = MatMergeSymbolic(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,&AB);CHKERRQ(ierr);
556*9b8102ccSHong Zhang   ierr = MatMergeNumeric(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,AB);CHKERRQ(ierr);
5576291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
5586291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] Merge is done...\n",rank);
5596291f5a6SHong Zhang #endif
5602499ec78SHong Zhang 
5612499ec78SHong Zhang   /* attach the supporting struct to C for reuse of symbolic C */
562776b82aeSLisandro Dalcin   ierr = PetscContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr);
563776b82aeSLisandro Dalcin   ierr = PetscContainerSetPointer(container,mult);CHKERRQ(ierr);
564776b82aeSLisandro Dalcin   ierr = PetscContainerSetUserDestroy(container,PetscContainerDestroy_Mat_MatMatMultMPI);CHKERRQ(ierr);
565d5821860SHong Zhang   ierr = PetscObjectCompose((PetscObject)AB,"Mat_MatMatMultMPI",(PetscObject)container);CHKERRQ(ierr);
566b160f555SLisandro Dalcin   ierr = PetscContainerDestroy(&container);CHKERRQ(ierr);
5673f7ae0dbSHong Zhang   mult->skipNumeric  = PETSC_TRUE; /* a numeric product is done here */
568d5821860SHong Zhang   mult->destroy      = AB->ops->destroy;
569d5821860SHong Zhang   mult->duplicate    = AB->ops->duplicate;
570cf1a0672SHong Zhang   AB->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_Scalable_32;
571a1a4e84aSHong Zhang   AB->ops->destroy        = MatDestroy_MPIAIJ_MatMatMult_32;
572a1a4e84aSHong Zhang   AB->ops->duplicate      = MatDuplicate_MPIAIJ_MatMatMult_32;
5738cdbd757SHong Zhang   AB->ops->matmult        = MatMatMult_MPIAIJ_MPIAIJ;
574d5821860SHong Zhang   *C                      = AB;
5752499ec78SHong Zhang   PetscFunctionReturn(0);
5762499ec78SHong Zhang }
5772499ec78SHong Zhang 
5789123193aSHong Zhang #undef __FUNCT__
5799123193aSHong Zhang #define __FUNCT__ "MatMatMult_MPIAIJ_MPIDense"
5809123193aSHong Zhang PetscErrorCode MatMatMult_MPIAIJ_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
5819123193aSHong Zhang {
5829123193aSHong Zhang   PetscErrorCode ierr;
5839123193aSHong Zhang 
5849123193aSHong Zhang   PetscFunctionBegin;
5859123193aSHong Zhang   if (scall == MAT_INITIAL_MATRIX){
5869123193aSHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIDense(A,B,fill,C);CHKERRQ(ierr);
5879123193aSHong Zhang   }
5889123193aSHong Zhang   ierr = MatMatMultNumeric_MPIAIJ_MPIDense(A,B,*C);CHKERRQ(ierr);
5899123193aSHong Zhang   PetscFunctionReturn(0);
5909123193aSHong Zhang }
5919123193aSHong Zhang 
5924324174eSBarry Smith typedef struct {
5934324174eSBarry Smith   Mat         workB;
5944324174eSBarry Smith   PetscScalar *rvalues,*svalues;
5954324174eSBarry Smith   MPI_Request *rwaits,*swaits;
5964324174eSBarry Smith } MPIAIJ_MPIDense;
5974324174eSBarry Smith 
5987af9e4fdSHong Zhang #undef __FUNCT__
5997af9e4fdSHong Zhang #define __FUNCT__ "MPIAIJ_MPIDenseDestroy"
6004324174eSBarry Smith PetscErrorCode MPIAIJ_MPIDenseDestroy(void *ctx)
6014324174eSBarry Smith {
6024324174eSBarry Smith   MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense*) ctx;
6034324174eSBarry Smith   PetscErrorCode  ierr;
6044324174eSBarry Smith 
6054324174eSBarry Smith   PetscFunctionBegin;
6066bf464f9SBarry Smith   ierr = MatDestroy(&contents->workB);CHKERRQ(ierr);
6074324174eSBarry Smith   ierr = PetscFree4(contents->rvalues,contents->svalues,contents->rwaits,contents->swaits);CHKERRQ(ierr);
6084324174eSBarry Smith   ierr = PetscFree(contents);CHKERRQ(ierr);
6094324174eSBarry Smith   PetscFunctionReturn(0);
6104324174eSBarry Smith }
6114324174eSBarry Smith 
6129123193aSHong Zhang #undef __FUNCT__
6139123193aSHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIDense"
6149123193aSHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
6159123193aSHong Zhang {
6169123193aSHong Zhang   PetscErrorCode         ierr;
617f32d5d43SBarry Smith   Mat_MPIAIJ             *aij = (Mat_MPIAIJ*) A->data;
618d0f46423SBarry Smith   PetscInt               nz = aij->B->cmap->n;
619bf0cc555SLisandro Dalcin   PetscContainer         container;
6204324174eSBarry Smith   MPIAIJ_MPIDense        *contents;
6214324174eSBarry Smith   VecScatter             ctx = aij->Mvctx;
6224324174eSBarry Smith   VecScatter_MPI_General *from = (VecScatter_MPI_General*) ctx->fromdata;
6234324174eSBarry Smith   VecScatter_MPI_General *to   = ( VecScatter_MPI_General*) ctx->todata;
624d0f46423SBarry Smith   PetscInt               m=A->rmap->n,n=B->cmap->n;
6259123193aSHong Zhang 
6269123193aSHong Zhang   PetscFunctionBegin;
627cb2480eaSBarry Smith   ierr = MatCreate(((PetscObject)B)->comm,C);CHKERRQ(ierr);
628d0f46423SBarry Smith   ierr = MatSetSizes(*C,m,n,A->rmap->N,B->cmap->N);CHKERRQ(ierr);
629cb2480eaSBarry Smith   ierr = MatSetType(*C,MATMPIDENSE);CHKERRQ(ierr);
630cb2480eaSBarry Smith   ierr = MatAssemblyBegin(*C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
631cb2480eaSBarry Smith   ierr = MatAssemblyEnd(*C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6328cdbd757SHong Zhang   (*C)->ops->matmult = MatMatMult_MPIAIJ_MPIDense;
633f32d5d43SBarry Smith 
6344324174eSBarry Smith   ierr = PetscNew(MPIAIJ_MPIDense,&contents);CHKERRQ(ierr);
635f32d5d43SBarry Smith   /* Create work matrix used to store off processor rows of B needed for local product */
636d0f46423SBarry Smith   ierr = MatCreateSeqDense(PETSC_COMM_SELF,nz,B->cmap->N,PETSC_NULL,&contents->workB);CHKERRQ(ierr);
6374324174eSBarry Smith   /* Create work arrays needed */
638d0f46423SBarry Smith   ierr = PetscMalloc4(B->cmap->N*from->starts[from->n],PetscScalar,&contents->rvalues,
639d0f46423SBarry Smith                       B->cmap->N*to->starts[to->n],PetscScalar,&contents->svalues,
6404324174eSBarry Smith                       from->n,MPI_Request,&contents->rwaits,
6414324174eSBarry Smith                       to->n,MPI_Request,&contents->swaits);CHKERRQ(ierr);
6424324174eSBarry Smith 
643bf0cc555SLisandro Dalcin   ierr = PetscContainerCreate(((PetscObject)A)->comm,&container);CHKERRQ(ierr);
644bf0cc555SLisandro Dalcin   ierr = PetscContainerSetPointer(container,contents);CHKERRQ(ierr);
645bf0cc555SLisandro Dalcin   ierr = PetscContainerSetUserDestroy(container,MPIAIJ_MPIDenseDestroy);CHKERRQ(ierr);
646bf0cc555SLisandro Dalcin   ierr = PetscObjectCompose((PetscObject)(*C),"workB",(PetscObject)container);CHKERRQ(ierr);
647bf0cc555SLisandro Dalcin   ierr = PetscContainerDestroy(&container);CHKERRQ(ierr);
6489123193aSHong Zhang   PetscFunctionReturn(0);
6499123193aSHong Zhang }
6509123193aSHong Zhang 
6517af9e4fdSHong Zhang #undef __FUNCT__
6527af9e4fdSHong Zhang #define __FUNCT__ "MatMPIDenseScatter"
653f32d5d43SBarry Smith /*
6542636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
6552636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
656f32d5d43SBarry Smith */
6574324174eSBarry Smith PetscErrorCode MatMPIDenseScatter(Mat A,Mat B,Mat C,Mat *outworkB)
658f32d5d43SBarry Smith {
659f32d5d43SBarry Smith   Mat_MPIAIJ             *aij = (Mat_MPIAIJ*)A->data;
660f32d5d43SBarry Smith   PetscErrorCode         ierr;
661f32d5d43SBarry Smith   PetscScalar            *b,*w,*svalues,*rvalues;
662f32d5d43SBarry Smith   VecScatter             ctx = aij->Mvctx;
663f32d5d43SBarry Smith   VecScatter_MPI_General *from = (VecScatter_MPI_General*) ctx->fromdata;
664f32d5d43SBarry Smith   VecScatter_MPI_General *to   = ( VecScatter_MPI_General*) ctx->todata;
665f32d5d43SBarry Smith   PetscInt               i,j,k;
666aa5bb8c0SSatish Balay   PetscInt               *sindices,*sstarts,*rindices,*rstarts;
667aa5bb8c0SSatish Balay   PetscMPIInt            *sprocs,*rprocs,nrecvs;
668f32d5d43SBarry Smith   MPI_Request            *swaits,*rwaits;
6697adad957SLisandro Dalcin   MPI_Comm               comm = ((PetscObject)A)->comm;
670d0f46423SBarry Smith   PetscMPIInt            tag = ((PetscObject)ctx)->tag,ncols = B->cmap->N, nrows = aij->B->cmap->n,imdex,nrowsB = B->rmap->n;
671f32d5d43SBarry Smith   MPI_Status             status;
6724324174eSBarry Smith   MPIAIJ_MPIDense        *contents;
673bf0cc555SLisandro Dalcin   PetscContainer         container;
6744324174eSBarry Smith   Mat                    workB;
675f32d5d43SBarry Smith 
676f32d5d43SBarry Smith   PetscFunctionBegin;
677bf0cc555SLisandro Dalcin   ierr = PetscObjectQuery((PetscObject)C,"workB",(PetscObject*)&container);CHKERRQ(ierr);
67829825010SHong Zhang   if (!container) SETERRQ(comm,PETSC_ERR_PLIB,"Container does not exist");
679bf0cc555SLisandro Dalcin   ierr = PetscContainerGetPointer(container,(void**)&contents);CHKERRQ(ierr);
6804324174eSBarry Smith 
6814324174eSBarry Smith   workB = *outworkB = contents->workB;
682cf1a0672SHong Zhang   if (nrows != workB->rmap->n) SETERRQ2(comm,PETSC_ERR_PLIB,"Number of rows of workB %D not equal to columns of aij->B %D",nrows,workB->cmap->n);
683f32d5d43SBarry Smith   sindices  = to->indices;
684f32d5d43SBarry Smith   sstarts   = to->starts;
685f32d5d43SBarry Smith   sprocs    = to->procs;
6864324174eSBarry Smith   swaits    = contents->swaits;
6874324174eSBarry Smith   svalues   = contents->svalues;
688f32d5d43SBarry Smith 
689f32d5d43SBarry Smith   rindices  = from->indices;
690f32d5d43SBarry Smith   rstarts   = from->starts;
691f32d5d43SBarry Smith   rprocs    = from->procs;
6924324174eSBarry Smith   rwaits    = contents->rwaits;
6934324174eSBarry Smith   rvalues   = contents->rvalues;
694f32d5d43SBarry Smith 
695f32d5d43SBarry Smith   ierr = MatGetArray(B,&b);CHKERRQ(ierr);
696f32d5d43SBarry Smith   ierr = MatGetArray(workB,&w);CHKERRQ(ierr);
697f32d5d43SBarry Smith 
698f32d5d43SBarry Smith   for (i=0; i<from->n; i++) {
699f32d5d43SBarry Smith     ierr = MPI_Irecv(rvalues+ncols*rstarts[i],ncols*(rstarts[i+1]-rstarts[i]),MPIU_SCALAR,rprocs[i],tag,comm,rwaits+i);CHKERRQ(ierr);
700f32d5d43SBarry Smith   }
701f32d5d43SBarry Smith 
702f32d5d43SBarry Smith   for (i=0; i<to->n; i++) {
703f32d5d43SBarry Smith     /* pack a message at a time */
704f32d5d43SBarry Smith     CHKMEMQ;
705f32d5d43SBarry Smith     for (j=0; j<sstarts[i+1]-sstarts[i]; j++){
706f32d5d43SBarry Smith       for (k=0; k<ncols; k++) {
707f32d5d43SBarry Smith         svalues[ncols*(sstarts[i] + j) + k] = b[sindices[sstarts[i]+j] + nrowsB*k];
7082636ff26SBarry Smith       }
7092636ff26SBarry Smith     }
710f32d5d43SBarry Smith     CHKMEMQ;
711f32d5d43SBarry Smith     ierr = MPI_Isend(svalues+ncols*sstarts[i],ncols*(sstarts[i+1]-sstarts[i]),MPIU_SCALAR,sprocs[i],tag,comm,swaits+i);CHKERRQ(ierr);
712f32d5d43SBarry Smith   }
7132636ff26SBarry Smith 
714f32d5d43SBarry Smith   nrecvs = from->n;
715f32d5d43SBarry Smith   while (nrecvs) {
716f32d5d43SBarry Smith     ierr = MPI_Waitany(from->n,rwaits,&imdex,&status);CHKERRQ(ierr);
717f32d5d43SBarry Smith     nrecvs--;
718f32d5d43SBarry Smith     /* unpack a message at a time */
719f32d5d43SBarry Smith     CHKMEMQ;
720f32d5d43SBarry Smith     for (j=0; j<rstarts[imdex+1]-rstarts[imdex]; j++){
721f32d5d43SBarry Smith       for (k=0; k<ncols; k++) {
722f32d5d43SBarry Smith         w[rindices[rstarts[imdex]+j] + nrows*k] = rvalues[ncols*(rstarts[imdex] + j) + k];
7232636ff26SBarry Smith       }
7242636ff26SBarry Smith     }
725f32d5d43SBarry Smith     CHKMEMQ;
726f32d5d43SBarry Smith   }
727cb9801acSJed Brown   if (to->n) {ierr = MPI_Waitall(to->n,swaits,to->sstatus);CHKERRQ(ierr);}
728f32d5d43SBarry Smith 
729f32d5d43SBarry Smith   ierr = MatRestoreArray(B,&b);CHKERRQ(ierr);
730f32d5d43SBarry Smith   ierr = MatRestoreArray(workB,&w);CHKERRQ(ierr);
731f32d5d43SBarry Smith   ierr = MatAssemblyBegin(workB,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
732f32d5d43SBarry Smith   ierr = MatAssemblyEnd(workB,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
733f32d5d43SBarry Smith   PetscFunctionReturn(0);
734f32d5d43SBarry Smith }
735f32d5d43SBarry Smith extern PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat,Mat,Mat);
736f32d5d43SBarry Smith 
7379123193aSHong Zhang #undef __FUNCT__
7389123193aSHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIDense"
7399123193aSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A,Mat B,Mat C)
7409123193aSHong Zhang {
7419123193aSHong Zhang   PetscErrorCode       ierr;
742f32d5d43SBarry Smith   Mat_MPIAIJ           *aij = (Mat_MPIAIJ*)A->data;
743f32d5d43SBarry Smith   Mat_MPIDense         *bdense = (Mat_MPIDense*)B->data;
744f32d5d43SBarry Smith   Mat_MPIDense         *cdense = (Mat_MPIDense*)C->data;
745f32d5d43SBarry Smith   Mat                  workB;
7469123193aSHong Zhang 
7479123193aSHong Zhang   PetscFunctionBegin;
7489123193aSHong Zhang 
749f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B*/
750f32d5d43SBarry Smith   ierr = MatMatMultNumeric_SeqAIJ_SeqDense(aij->A,bdense->A,cdense->A);CHKERRQ(ierr);
751f32d5d43SBarry Smith 
752f32d5d43SBarry Smith   /* get off processor parts of B needed to complete the product */
7534324174eSBarry Smith   ierr = MatMPIDenseScatter(A,B,C,&workB);CHKERRQ(ierr);
754f32d5d43SBarry Smith 
755f32d5d43SBarry Smith   /* off-diagonal block of A times nonlocal rows of B */
756f32d5d43SBarry Smith   ierr = MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A);CHKERRQ(ierr);
7579123193aSHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7589123193aSHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7599123193aSHong Zhang   PetscFunctionReturn(0);
7609123193aSHong Zhang }
761cf1a0672SHong Zhang 
7621634b032SHong Zhang #undef __FUNCT__
763cf1a0672SHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ_Scalable"
764cf1a0672SHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_Scalable(Mat A,Mat P,Mat C)
7651634b032SHong Zhang {
7661634b032SHong Zhang   PetscErrorCode     ierr;
767cf1a0672SHong Zhang   Mat_MPIAIJ         *a=(Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data;
768cf1a0672SHong Zhang   Mat_SeqAIJ         *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
769cf1a0672SHong Zhang   Mat_SeqAIJ         *cd=(Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data;
770cf1a0672SHong Zhang   PetscInt           *adi=ad->i,*adj,*aoi=ao->i,*aoj;
771cf1a0672SHong Zhang   PetscScalar        *ada,*aoa,*cda=cd->a,*coa=co->a;
772cf1a0672SHong Zhang   Mat_SeqAIJ         *p_loc,*p_oth;
773cf1a0672SHong Zhang   PetscInt           *pi_loc,*pj_loc,*pi_oth,*pj_oth,*pj;
77429825010SHong Zhang   PetscScalar        *pa_loc,*pa_oth,*pa,valtmp,*ca;
77529825010SHong Zhang   PetscInt           cm=C->rmap->n,anz,pnz;
776cf1a0672SHong Zhang   Mat_PtAPMPI        *ptap=c->ptap;
77729825010SHong Zhang   PetscScalar        *apa_sparse=ptap->apa;
778cf1a0672SHong Zhang   PetscInt           *api,*apj,*apJ,i,j,k,row;
77929825010SHong Zhang   PetscInt           cstart=C->cmap->rstart;
78029825010SHong Zhang   PetscInt           cdnz,conz,k0,k1,nextp;
7811634b032SHong Zhang #if defined(DEBUG_MATMATMULT)
782cf1a0672SHong Zhang   PetscMPIInt        rank=a->rank;
7831634b032SHong Zhang #endif
7841634b032SHong Zhang 
7851634b032SHong Zhang   PetscFunctionBegin;
7861634b032SHong Zhang #if defined(DEBUG_MATMATMULT)
787cf1a0672SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultNumeric_MPIAIJ_MPIAIJ_Scalable()...\n",rank);
7881634b032SHong Zhang #endif
789cf1a0672SHong Zhang 
790cf1a0672SHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
791cf1a0672SHong Zhang   /*-----------------------------------------------------*/
792cf1a0672SHong Zhang   /* update numerical values of P_oth and P_loc */
793cf1a0672SHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
794cf1a0672SHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
795cf1a0672SHong Zhang #if defined(DEBUG_MATMATMULT)
796cf1a0672SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] got P_oth and P_loc...\n",rank);
797cf1a0672SHong Zhang #endif
798cf1a0672SHong Zhang 
799cf1a0672SHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
800cf1a0672SHong Zhang   /*----------------------------------------------------------*/
801cf1a0672SHong Zhang   /* get data from symbolic products */
802cf1a0672SHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
803cf1a0672SHong Zhang   p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
804cf1a0672SHong Zhang   pi_loc=p_loc->i; pj_loc=p_loc->j; pa_loc=p_loc->a;
805cf1a0672SHong Zhang   pi_oth=p_oth->i; pj_oth=p_oth->j; pa_oth=p_oth->a;
806cf1a0672SHong Zhang 
80729825010SHong Zhang   api = ptap->api;
80829825010SHong Zhang   apj = ptap->apj;
809cf1a0672SHong Zhang   for (i=0; i<cm; i++) {
81029825010SHong Zhang     apJ = apj + api[i];
81129825010SHong Zhang 
812cf1a0672SHong Zhang     /* diagonal portion of A */
813cf1a0672SHong Zhang     anz = adi[i+1] - adi[i];
814cf1a0672SHong Zhang     adj = ad->j + adi[i];
815cf1a0672SHong Zhang     ada = ad->a + adi[i];
816cf1a0672SHong Zhang     for (j=0; j<anz; j++) {
817cf1a0672SHong Zhang       row = adj[j];
818cf1a0672SHong Zhang       pnz = pi_loc[row+1] - pi_loc[row];
819cf1a0672SHong Zhang       pj  = pj_loc + pi_loc[row];
820cf1a0672SHong Zhang       pa  = pa_loc + pi_loc[row];
82129825010SHong Zhang       /* perform sparse axpy */
822cf1a0672SHong Zhang       valtmp = ada[j];
82329825010SHong Zhang       nextp  = 0;
82429825010SHong Zhang       for (k=0; nextp<pnz; k++) {
82529825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
82629825010SHong Zhang           apa_sparse[k] += valtmp*pa[nextp++];
82729825010SHong Zhang         }
8281634b032SHong Zhang       }
829cf1a0672SHong Zhang       ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr);
830cf1a0672SHong Zhang     }
8311634b032SHong Zhang 
832cf1a0672SHong Zhang     /* off-diagonal portion of A */
833cf1a0672SHong Zhang     anz = aoi[i+1] - aoi[i];
834cf1a0672SHong Zhang     aoj = ao->j + aoi[i];
835cf1a0672SHong Zhang     aoa = ao->a + aoi[i];
836cf1a0672SHong Zhang     for (j=0; j<anz; j++) {
837cf1a0672SHong Zhang       row = aoj[j];
838cf1a0672SHong Zhang       pnz = pi_oth[row+1] - pi_oth[row];
839cf1a0672SHong Zhang       pj  = pj_oth + pi_oth[row];
840cf1a0672SHong Zhang       pa  = pa_oth + pi_oth[row];
84129825010SHong Zhang       /* perform sparse axpy */
842cf1a0672SHong Zhang       valtmp = aoa[j];
84329825010SHong Zhang       nextp  = 0;
84429825010SHong Zhang       for (k=0; nextp<pnz; k++) {
84529825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
84629825010SHong Zhang           apa_sparse[k] += valtmp*pa[nextp++];
84729825010SHong Zhang         }
848cf1a0672SHong Zhang       }
849cf1a0672SHong Zhang       ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr);
850cf1a0672SHong Zhang     }
8511634b032SHong Zhang 
852cf1a0672SHong Zhang     /* set values in C */
853cf1a0672SHong Zhang     cdnz = cd->i[i+1] - cd->i[i];
854cf1a0672SHong Zhang     conz = co->i[i+1] - co->i[i];
8551634b032SHong Zhang 
856cf1a0672SHong Zhang     /* 1st off-diagoanl part of C */
857cf1a0672SHong Zhang     ca = coa + co->i[i];
858cf1a0672SHong Zhang     k  = 0;
859cf1a0672SHong Zhang     for (k0=0; k0<conz; k0++){
860cf1a0672SHong Zhang       if (apJ[k] >= cstart) break;
86129825010SHong Zhang       ca[k0]      = apa_sparse[k];
86229825010SHong Zhang       apa_sparse[k] = 0.0;
863cf1a0672SHong Zhang       k++;
864cf1a0672SHong Zhang     }
8651634b032SHong Zhang 
866cf1a0672SHong Zhang     /* diagonal part of C */
867cf1a0672SHong Zhang     ca = cda + cd->i[i];
868cf1a0672SHong Zhang     for (k1=0; k1<cdnz; k1++){
86929825010SHong Zhang       ca[k1]      = apa_sparse[k];
87029825010SHong Zhang       apa_sparse[k] = 0.0;
871cf1a0672SHong Zhang       k++;
872cf1a0672SHong Zhang     }
873cf1a0672SHong Zhang 
874cf1a0672SHong Zhang     /* 2nd off-diagoanl part of C */
875cf1a0672SHong Zhang     ca = coa + co->i[i];
876cf1a0672SHong Zhang     for (; k0<conz; k0++){
87729825010SHong Zhang       ca[k0]      = apa_sparse[k];
87829825010SHong Zhang       apa_sparse[k] = 0.0;
879cf1a0672SHong Zhang       k++;
880cf1a0672SHong Zhang     }
881cf1a0672SHong Zhang   }
882cf1a0672SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
883cf1a0672SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
884cf1a0672SHong Zhang   PetscFunctionReturn(0);
885cf1a0672SHong Zhang }
886cf1a0672SHong Zhang 
887cf1a0672SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ(), except using LLCondensed to avoid O(BN) memory requirement */
888cf1a0672SHong Zhang #undef __FUNCT__
889cf1a0672SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ_Scalable"
890cf1a0672SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_Scalable(Mat A,Mat P,PetscReal fill,Mat *C)
891cf1a0672SHong Zhang {
892cf1a0672SHong Zhang   PetscErrorCode       ierr;
893cf1a0672SHong Zhang   MPI_Comm             comm=((PetscObject)A)->comm;
894cf1a0672SHong Zhang   Mat                  Cmpi;
895cf1a0672SHong Zhang   Mat_PtAPMPI          *ptap;
896cf1a0672SHong Zhang   PetscFreeSpaceList   free_space=PETSC_NULL,current_space=PETSC_NULL;
897cf1a0672SHong Zhang   Mat_MPIAIJ           *a=(Mat_MPIAIJ*)A->data,*c;
898cf1a0672SHong Zhang   Mat_SeqAIJ           *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth;
899cf1a0672SHong Zhang   PetscInt             *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz;
900cf1a0672SHong Zhang   PetscInt             *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart;
901cf1a0672SHong Zhang   PetscInt             i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi,*nlnk,*lnk,apnz_max=0;
902cf1a0672SHong Zhang   PetscInt             am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n;
903cf1a0672SHong Zhang   PetscInt             nlnk_max,armax,prmax;
904cf1a0672SHong Zhang   PetscBT              lnkbt;
905cf1a0672SHong Zhang   PetscReal            afill;
906cf1a0672SHong Zhang   PetscScalar          *apa;
907cf1a0672SHong Zhang #if defined(DEBUG_MATMATMULT)
908cf1a0672SHong Zhang   PetscMPIInt          rank=a->rank;
909cf1a0672SHong Zhang #endif
910cf1a0672SHong Zhang 
911cf1a0672SHong Zhang   PetscFunctionBegin;
912cf1a0672SHong Zhang #if defined(DEBUG_MATMATMULT)
913cf1a0672SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
914cf1a0672SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultSymbolic_MPIAIJ_MPIAIJ_Scalable()...\n",rank);
915cf1a0672SHong Zhang #endif
916cf1a0672SHong Zhang 
917cf1a0672SHong Zhang   /* create struct Mat_PtAPMPI and attached it to C later */
918cf1a0672SHong Zhang   ierr = PetscNew(Mat_PtAPMPI,&ptap);CHKERRQ(ierr);
919cf1a0672SHong Zhang 
920cf1a0672SHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
921cf1a0672SHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
922cf1a0672SHong Zhang #if defined(DEBUG_MATMATMULT)
923cf1a0672SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] P_oth is done...\n",rank);
924cf1a0672SHong Zhang #endif
925cf1a0672SHong Zhang   /* get P_loc by taking all local rows of P */
926cf1a0672SHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
927cf1a0672SHong Zhang 
928cf1a0672SHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
929cf1a0672SHong Zhang   p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
930cf1a0672SHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j;
931cf1a0672SHong Zhang   pi_oth = p_oth->i; pj_oth = p_oth->j;
932cf1a0672SHong Zhang 
933cf1a0672SHong Zhang #if defined(DEBUG_MATMATMULT)
934cf1a0672SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] P_loc is done, Annz %D * P_locnnz %D = %D...\n",rank,ad->i[am]+ao->i[am],p_loc->rmax,(ad->i[am]+ao->i[am])*p_loc->rmax);
935cf1a0672SHong Zhang #endif
936cf1a0672SHong Zhang 
937cf1a0672SHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
938cf1a0672SHong Zhang   /*-------------------------------------------------------------------*/
939cf1a0672SHong Zhang   ierr  = PetscMalloc((am+2)*sizeof(PetscInt),&api);CHKERRQ(ierr);
940cf1a0672SHong Zhang   ptap->api = api;
941cf1a0672SHong Zhang   api[0]    = 0;
942cf1a0672SHong Zhang 
943cf1a0672SHong Zhang   /* create and initialize a linked list */
944cf1a0672SHong Zhang   armax = ad->rmax+ao->rmax;
945cf1a0672SHong Zhang   prmax = PetscMax(p_loc->rmax,p_oth->rmax);
946cf1a0672SHong Zhang   nlnk_max = armax*prmax;
947cf1a0672SHong Zhang   if (!nlnk_max || nlnk_max > pN) nlnk_max = pN;
948cf1a0672SHong Zhang #if defined(DEBUG_MATMATMULT)
949cf1a0672SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] pN %d; nlnk_max %d; Armax %d+%d=%d; Prmax Max(%d,%d)=%d\n",rank,pN,nlnk_max,ad->rmax,ao->rmax,armax,p_loc->rmax,p_oth->rmax,prmax);
950cf1a0672SHong Zhang #endif
951cf1a0672SHong Zhang   ierr = PetscLLCondensedCreate(nlnk_max,pN,lnk,nlnk,lnkbt);
952cf1a0672SHong Zhang 
953cf1a0672SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
954cf1a0672SHong Zhang   ierr = PetscFreeSpaceGet((PetscInt)(fill*(adi[am]+aoi[am]+pi_loc[pm])),&free_space);CHKERRQ(ierr);
955cf1a0672SHong Zhang   current_space = free_space;
956cf1a0672SHong Zhang 
957cf1a0672SHong Zhang   ierr = MatPreallocateInitialize(comm,am,pn,dnz,onz);CHKERRQ(ierr);
958cf1a0672SHong Zhang   for (i=0; i<am; i++) {
959cf1a0672SHong Zhang     apnz = 0;
960cf1a0672SHong Zhang     /* diagonal portion of A */
961cf1a0672SHong Zhang     nzi = adi[i+1] - adi[i];
962cf1a0672SHong Zhang     for (j=0; j<nzi; j++){
963cf1a0672SHong Zhang       row = *adj++;
964cf1a0672SHong Zhang       pnz = pi_loc[row+1] - pi_loc[row];
965cf1a0672SHong Zhang       Jptr  = pj_loc + pi_loc[row];
966cf1a0672SHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
967cf1a0672SHong Zhang       ierr = PetscLLCondensedAddSorted(nlnk_max,pN,pnz,Jptr,nlnk,lnk,lnkbt);CHKERRQ(ierr);
968cf1a0672SHong Zhang     }
969cf1a0672SHong Zhang     /* off-diagonal portion of A */
970cf1a0672SHong Zhang     nzi = aoi[i+1] - aoi[i];
971cf1a0672SHong Zhang     for (j=0; j<nzi; j++){
972cf1a0672SHong Zhang       row = *aoj++;
973cf1a0672SHong Zhang       pnz = pi_oth[row+1] - pi_oth[row];
974cf1a0672SHong Zhang       Jptr  = pj_oth + pi_oth[row];
975cf1a0672SHong Zhang       ierr = PetscLLCondensedAddSorted(nlnk_max,pN,pnz,Jptr,nlnk,lnk,lnkbt);CHKERRQ(ierr);
976cf1a0672SHong Zhang     }
977cf1a0672SHong Zhang 
978cf1a0672SHong Zhang     apnz     = *nlnk;
979cf1a0672SHong Zhang     api[i+1] = api[i] + apnz;
980cf1a0672SHong Zhang     if (apnz > apnz_max) apnz_max = apnz;
981cf1a0672SHong Zhang 
982cf1a0672SHong Zhang     /* if free space is not available, double the total space in the list */
983cf1a0672SHong Zhang     if (current_space->local_remaining<apnz) {
984cf1a0672SHong Zhang       ierr = PetscFreeSpaceGet(apnz+current_space->total_array_size,&current_space);CHKERRQ(ierr);
985cf1a0672SHong Zhang       nspacedouble++;
986cf1a0672SHong Zhang     }
987cf1a0672SHong Zhang 
988cf1a0672SHong Zhang     /* Copy data into free space, then initialize lnk */
989cf1a0672SHong Zhang     ierr = PetscLLCondensedClean(nlnk_max,pN,apnz,current_space->array,nlnk,lnk,lnkbt);CHKERRQ(ierr);
990cf1a0672SHong Zhang     ierr = MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz);CHKERRQ(ierr);
991cf1a0672SHong Zhang     current_space->array           += apnz;
992cf1a0672SHong Zhang     current_space->local_used      += apnz;
993cf1a0672SHong Zhang     current_space->local_remaining -= apnz;
994cf1a0672SHong Zhang   }
995cf1a0672SHong Zhang 
996cf1a0672SHong Zhang   /* Allocate space for apj, initialize apj, and */
997cf1a0672SHong Zhang   /* destroy list of free space and other temporary array(s) */
998cf1a0672SHong Zhang   ierr = PetscMalloc((api[am]+1)*sizeof(PetscInt),&ptap->apj);CHKERRQ(ierr);
999cf1a0672SHong Zhang   apj  = ptap->apj;
1000cf1a0672SHong Zhang   ierr = PetscFreeSpaceContiguous(&free_space,ptap->apj);CHKERRQ(ierr);
1001cf1a0672SHong Zhang   ierr = PetscLLCondensedDestroy(lnk,lnkbt);CHKERRQ(ierr);
1002cf1a0672SHong Zhang #if defined(DEBUG_MATMATMULT)
1003cf1a0672SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] AP is done..., apnz_max %d\n",rank,apnz_max);
1004cf1a0672SHong Zhang #endif
1005cf1a0672SHong Zhang 
1006cf1a0672SHong Zhang   /* create and assemble symbolic parallel matrix Cmpi */
1007cf1a0672SHong Zhang   /*----------------------------------------------------*/
1008cf1a0672SHong Zhang   ierr = MatCreate(comm,&Cmpi);CHKERRQ(ierr);
1009cf1a0672SHong Zhang   ierr = MatSetSizes(Cmpi,am,pn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
1010cf1a0672SHong Zhang   ierr = MatSetType(Cmpi,MATMPIAIJ);CHKERRQ(ierr);
1011cf1a0672SHong Zhang   ierr = MatMPIAIJSetPreallocation(Cmpi,0,dnz,0,onz);CHKERRQ(ierr);
1012cf1a0672SHong Zhang   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
1013cf1a0672SHong Zhang   ierr = MatSetBlockSize(Cmpi,1);CHKERRQ(ierr);
1014cf1a0672SHong Zhang 
101529825010SHong Zhang   /* malloc apa for assembly Cmpi */
1016cf1a0672SHong Zhang   ierr = PetscMalloc(apnz_max*sizeof(PetscScalar),&apa);CHKERRQ(ierr);
1017cf1a0672SHong Zhang   ierr = PetscMemzero(apa,apnz_max*sizeof(PetscScalar));CHKERRQ(ierr);
101829825010SHong Zhang   ptap->apa = apa;
1019cf1a0672SHong Zhang   for (i=0; i<am; i++){
1020cf1a0672SHong Zhang     row  = i + rstart;
1021cf1a0672SHong Zhang     apnz = api[i+1] - api[i];
1022cf1a0672SHong Zhang     ierr = MatSetValues(Cmpi,1,&row,apnz,apj,apa,INSERT_VALUES);CHKERRQ(ierr);
1023cf1a0672SHong Zhang     apj += apnz;
1024cf1a0672SHong Zhang   }
1025cf1a0672SHong Zhang   ierr = MatAssemblyBegin(Cmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1026cf1a0672SHong Zhang   ierr = MatAssemblyEnd(Cmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1027cf1a0672SHong Zhang 
1028cf1a0672SHong Zhang   ptap->destroy             = Cmpi->ops->destroy;
1029cf1a0672SHong Zhang   ptap->duplicate           = Cmpi->ops->duplicate;
1030cf1a0672SHong Zhang   Cmpi->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_Scalable;
1031cf1a0672SHong Zhang   Cmpi->ops->destroy        = MatDestroy_MPIAIJ_MatMatMult;
1032cf1a0672SHong Zhang   Cmpi->ops->duplicate      = MatDuplicate_MPIAIJ_MatMatMult;
1033cf1a0672SHong Zhang 
1034cf1a0672SHong Zhang   /* attach the supporting struct to Cmpi for reuse */
1035cf1a0672SHong Zhang   c = (Mat_MPIAIJ*)Cmpi->data;
1036cf1a0672SHong Zhang   c->ptap  = ptap;
1037cf1a0672SHong Zhang 
1038cf1a0672SHong Zhang   *C = Cmpi;
1039cf1a0672SHong Zhang 
1040cf1a0672SHong Zhang   /* set MatInfo */
1041cf1a0672SHong Zhang   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]) + 1.e-5;
1042cf1a0672SHong Zhang   if (afill < 1.0) afill = 1.0;
1043cf1a0672SHong Zhang   Cmpi->info.mallocs           = nspacedouble;
1044cf1a0672SHong Zhang   Cmpi->info.fill_ratio_given  = fill;
1045cf1a0672SHong Zhang   Cmpi->info.fill_ratio_needed = afill;
1046cf1a0672SHong Zhang 
1047cf1a0672SHong Zhang #if defined(PETSC_USE_INFO)
1048cf1a0672SHong Zhang   if (api[am]) {
1049cf1a0672SHong Zhang     ierr = PetscInfo3(Cmpi,"Reallocs %D; Fill ratio: given %G needed %G.\n",nspacedouble,fill,afill);CHKERRQ(ierr);
1050cf1a0672SHong Zhang     ierr = PetscInfo1(Cmpi,"Use MatMatMult(A,B,MatReuse,%G,&C) for best performance.;\n",afill);CHKERRQ(ierr);
1051cf1a0672SHong Zhang   } else {
1052cf1a0672SHong Zhang     ierr = PetscInfo(Cmpi,"Empty matrix product\n");CHKERRQ(ierr);
1053cf1a0672SHong Zhang   }
1054cf1a0672SHong Zhang #endif
10551634b032SHong Zhang   PetscFunctionReturn(0);
10561634b032SHong Zhang }
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