1be1d678aSKris Buschelman 22499ec78SHong Zhang /* 32499ec78SHong Zhang Defines matrix-matrix product routines for pairs of MPIAIJ matrices 42499ec78SHong Zhang C = A * B 52499ec78SHong Zhang */ 6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 8c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 9c6db04a5SJed Brown #include <petscbt.h> 10c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> 11af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 1297929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 131634b032SHong Zhang 145e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 154222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat); 165e5acdf2Sstefano_zampini #endif 175e5acdf2Sstefano_zampini 189371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C) { 198a9c020eSBarry Smith Mat_Product *product = C->product; 208a9c020eSBarry Smith Mat B = product->B; 218a9c020eSBarry Smith 228a9c020eSBarry Smith PetscFunctionBegin; 238a9c020eSBarry Smith PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &product->B)); 248a9c020eSBarry Smith PetscCall(MatDestroy(&B)); 258a9c020eSBarry Smith PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C)); 268a9c020eSBarry Smith PetscFunctionReturn(0); 278a9c020eSBarry Smith } 288a9c020eSBarry Smith 299371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C) { 304222ddf1SHong Zhang Mat_Product *product = C->product; 314222ddf1SHong Zhang Mat A = product->A, B = product->B; 324222ddf1SHong Zhang MatProductAlgorithm alg = product->alg; 334222ddf1SHong Zhang PetscReal fill = product->fill; 345e68f438SHong Zhang PetscBool flg; 352499ec78SHong Zhang 362499ec78SHong Zhang PetscFunctionBegin; 374222ddf1SHong Zhang /* scalable */ 389566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "scalable", &flg)); 394222ddf1SHong Zhang if (flg) { 409566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C)); 416718818eSStefano Zampini PetscFunctionReturn(0); 420fc8cf34SHong Zhang } 437d0a89b7SHong Zhang 444222ddf1SHong Zhang /* nonscalable */ 459566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "nonscalable", &flg)); 464222ddf1SHong Zhang if (flg) { 479566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C)); 486718818eSStefano Zampini PetscFunctionReturn(0); 494222ddf1SHong Zhang } 504222ddf1SHong Zhang 514222ddf1SHong Zhang /* seqmpi */ 529566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "seqmpi", &flg)); 534222ddf1SHong Zhang if (flg) { 549566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A, B, fill, C)); 556718818eSStefano Zampini PetscFunctionReturn(0); 564222ddf1SHong Zhang } 574222ddf1SHong Zhang 584e84afc0SStefano Zampini /* backend general code */ 599566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "backend", &flg)); 604e84afc0SStefano Zampini if (flg) { 619566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic_MPIAIJBACKEND(C)); 624e84afc0SStefano Zampini PetscFunctionReturn(0); 634e84afc0SStefano Zampini } 644e84afc0SStefano Zampini 654222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 669566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "hypre", &flg)); 674222ddf1SHong Zhang if (flg) { 689566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C)); 694222ddf1SHong Zhang PetscFunctionReturn(0); 704222ddf1SHong Zhang } 714222ddf1SHong Zhang #endif 724222ddf1SHong Zhang SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Mat Product Algorithm is not supported"); 732499ec78SHong Zhang } 742499ec78SHong Zhang 759371c9d4SSatish Balay PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(void *data) { 766718818eSStefano Zampini Mat_APMPI *ptap = (Mat_APMPI *)data; 77598bc09dSHong Zhang 78598bc09dSHong Zhang PetscFunctionBegin; 799566063dSJacob Faibussowitsch PetscCall(PetscFree2(ptap->startsj_s, ptap->startsj_r)); 809566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->bufa)); 819566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->P_loc)); 829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->P_oth)); 839566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->Pt)); 849566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->api)); 859566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->apj)); 869566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->apa)); 879566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap)); 88598bc09dSHong Zhang PetscFunctionReturn(0); 89598bc09dSHong Zhang } 90598bc09dSHong Zhang 919371c9d4SSatish Balay PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, Mat C) { 924ae0847bSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data; 93598bc09dSHong Zhang Mat_SeqAIJ *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data; 94598bc09dSHong Zhang Mat_SeqAIJ *cd = (Mat_SeqAIJ *)(c->A)->data, *co = (Mat_SeqAIJ *)(c->B)->data; 95c12557a1SHong Zhang PetscScalar *cda = cd->a, *coa = co->a; 96598bc09dSHong Zhang Mat_SeqAIJ *p_loc, *p_oth; 979ce11a7cSHong Zhang PetscScalar *apa, *ca; 98c12557a1SHong Zhang PetscInt cm = C->rmap->n; 996718818eSStefano Zampini Mat_APMPI *ptap; 100c12557a1SHong Zhang PetscInt *api, *apj, *apJ, i, k; 10129825010SHong Zhang PetscInt cstart = C->cmap->rstart; 102598bc09dSHong Zhang PetscInt cdnz, conz, k0, k1; 103ce496241SStefano Zampini const PetscScalar *dummy; 1049467f45fSHong Zhang MPI_Comm comm; 1059467f45fSHong Zhang PetscMPIInt size; 106598bc09dSHong Zhang 107598bc09dSHong Zhang PetscFunctionBegin; 1086718818eSStefano Zampini MatCheckProduct(C, 3); 1096718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 11028b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 113aed4548fSBarry Smith PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()"); 11480da8df7SHong Zhang 11565e4b4d4SStefano Zampini /* flag CPU mask for C */ 11665e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 11765e4b4d4SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 11865e4b4d4SStefano Zampini if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU; 11965e4b4d4SStefano Zampini if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU; 12065e4b4d4SStefano Zampini #endif 12165e4b4d4SStefano Zampini 122a1a4e84aSHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */ 123598bc09dSHong Zhang /*-----------------------------------------------------*/ 124a1a4e84aSHong Zhang /* update numerical values of P_oth and P_loc */ 1259566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 1269566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc)); 127598bc09dSHong Zhang 128598bc09dSHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 129598bc09dSHong Zhang /*----------------------------------------------------------*/ 130598bc09dSHong Zhang /* get data from symbolic products */ 131a1a4e84aSHong Zhang p_loc = (Mat_SeqAIJ *)(ptap->P_loc)->data; 132c12557a1SHong Zhang p_oth = NULL; 1339371c9d4SSatish Balay if (size > 1) { p_oth = (Mat_SeqAIJ *)(ptap->P_oth)->data; } 134598bc09dSHong Zhang 135598bc09dSHong Zhang /* get apa for storing dense row A[i,:]*P */ 136598bc09dSHong Zhang apa = ptap->apa; 137598bc09dSHong Zhang 13829825010SHong Zhang api = ptap->api; 13929825010SHong Zhang apj = ptap->apj; 140ce496241SStefano Zampini /* trigger copy to CPU */ 1419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy)); 1429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy)); 1439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy)); 1449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy)); 145598bc09dSHong Zhang for (i = 0; i < cm; i++) { 146c12557a1SHong Zhang /* compute apa = A[i,:]*P */ 147e497d3c8SHong Zhang AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa); 148598bc09dSHong Zhang 149598bc09dSHong Zhang /* set values in C */ 150598bc09dSHong Zhang apJ = apj + api[i]; 151598bc09dSHong Zhang cdnz = cd->i[i + 1] - cd->i[i]; 152598bc09dSHong Zhang conz = co->i[i + 1] - co->i[i]; 153598bc09dSHong Zhang 154910cf402Sprj- /* 1st off-diagonal part of C */ 155598bc09dSHong Zhang ca = coa + co->i[i]; 156598bc09dSHong Zhang k = 0; 157598bc09dSHong Zhang for (k0 = 0; k0 < conz; k0++) { 158598bc09dSHong Zhang if (apJ[k] >= cstart) break; 159598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 1605cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 161598bc09dSHong Zhang } 162598bc09dSHong Zhang 163598bc09dSHong Zhang /* diagonal part of C */ 164598bc09dSHong Zhang ca = cda + cd->i[i]; 165598bc09dSHong Zhang for (k1 = 0; k1 < cdnz; k1++) { 166598bc09dSHong Zhang ca[k1] = apa[apJ[k]]; 1675cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 168598bc09dSHong Zhang } 169598bc09dSHong Zhang 170910cf402Sprj- /* 2nd off-diagonal part of C */ 171598bc09dSHong Zhang ca = coa + co->i[i]; 172598bc09dSHong Zhang for (; k0 < conz; k0++) { 173598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 1745cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 175598bc09dSHong Zhang } 176598bc09dSHong Zhang } 1779566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 1789566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 179598bc09dSHong Zhang PetscFunctionReturn(0); 180598bc09dSHong Zhang } 181598bc09dSHong Zhang 1829371c9d4SSatish Balay PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, PetscReal fill, Mat C) { 183ce94432eSBarry Smith MPI_Comm comm; 1849467f45fSHong Zhang PetscMPIInt size; 1853cdca5ebSHong Zhang Mat_APMPI *ptap; 1860298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 1876718818eSStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 188bfcd1a73SHong Zhang Mat_SeqAIJ *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data, *p_loc, *p_oth; 1897dbaa2c6Sandi selinger PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz; 1904ae0847bSHong Zhang PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart; 191d14fa243SHong Zhang PetscInt *lnk, i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi; 1925cab4f04SHong Zhang PetscInt am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n; 193598bc09dSHong Zhang PetscBT lnkbt; 194bfcd1a73SHong Zhang PetscReal afill; 195b92f168fSBarry Smith MatType mtype; 196598bc09dSHong Zhang 197598bc09dSHong Zhang PetscFunctionBegin; 1986718818eSStefano Zampini MatCheckProduct(C, 4); 19928b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 2009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 2019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2029467f45fSHong Zhang 2033cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 2049566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 205598bc09dSHong Zhang 206598bc09dSHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 2079566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 20819f0e57aSHong Zhang 209598bc09dSHong Zhang /* get P_loc by taking all local rows of P */ 2109566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 211598bc09dSHong Zhang 212a1a4e84aSHong Zhang p_loc = (Mat_SeqAIJ *)(ptap->P_loc)->data; 2139371c9d4SSatish Balay pi_loc = p_loc->i; 2149371c9d4SSatish Balay pj_loc = p_loc->j; 2159467f45fSHong Zhang if (size > 1) { 2169467f45fSHong Zhang p_oth = (Mat_SeqAIJ *)(ptap->P_oth)->data; 2179371c9d4SSatish Balay pi_oth = p_oth->i; 2189371c9d4SSatish Balay pj_oth = p_oth->j; 21920e3dc75SHong Zhang } else { 22020e3dc75SHong Zhang p_oth = NULL; 2219371c9d4SSatish Balay pi_oth = NULL; 2229371c9d4SSatish Balay pj_oth = NULL; 2239467f45fSHong Zhang } 224598bc09dSHong Zhang 225598bc09dSHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 226598bc09dSHong Zhang /*-------------------------------------------------------------------*/ 2279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &api)); 228a1a4e84aSHong Zhang ptap->api = api; 229598bc09dSHong Zhang api[0] = 0; 230598bc09dSHong Zhang 2315cab4f04SHong Zhang /* create and initialize a linked list */ 2329566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt)); 233598bc09dSHong Zhang 234bfcd1a73SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 2359566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space)); 236598bc09dSHong Zhang current_space = free_space; 237598bc09dSHong Zhang 238d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 239598bc09dSHong Zhang for (i = 0; i < am; i++) { 240598bc09dSHong Zhang /* diagonal portion of A */ 241598bc09dSHong Zhang nzi = adi[i + 1] - adi[i]; 242598bc09dSHong Zhang for (j = 0; j < nzi; j++) { 243598bc09dSHong Zhang row = *adj++; 244598bc09dSHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 245598bc09dSHong Zhang Jptr = pj_loc + pi_loc[row]; 246598bc09dSHong Zhang /* add non-zero cols of P into the sorted linked list lnk */ 2479566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt)); 248598bc09dSHong Zhang } 249598bc09dSHong Zhang /* off-diagonal portion of A */ 250598bc09dSHong Zhang nzi = aoi[i + 1] - aoi[i]; 251598bc09dSHong Zhang for (j = 0; j < nzi; j++) { 252598bc09dSHong Zhang row = *aoj++; 253598bc09dSHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 254598bc09dSHong Zhang Jptr = pj_oth + pi_oth[row]; 2559566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt)); 256598bc09dSHong Zhang } 2578c78258cSHong Zhang /* add possible missing diagonal entry */ 2588c78258cSHong Zhang if (C->force_diagonals) { 2598c78258cSHong Zhang j = i + rstart; /* column index */ 2609566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1, &j, lnk, lnkbt)); 2618c78258cSHong Zhang } 262598bc09dSHong Zhang 263d14fa243SHong Zhang apnz = lnk[0]; 264598bc09dSHong Zhang api[i + 1] = api[i] + apnz; 265598bc09dSHong Zhang 266598bc09dSHong Zhang /* if free space is not available, double the total space in the list */ 267598bc09dSHong Zhang if (current_space->local_remaining < apnz) { 2689566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), ¤t_space)); 269598bc09dSHong Zhang nspacedouble++; 270598bc09dSHong Zhang } 271598bc09dSHong Zhang 272598bc09dSHong Zhang /* Copy data into free space, then initialize lnk */ 2739566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(pN, apnz, current_space->array, lnk, lnkbt)); 2749566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz)); 2752205254eSKarl Rupp 276598bc09dSHong Zhang current_space->array += apnz; 277598bc09dSHong Zhang current_space->local_used += apnz; 278598bc09dSHong Zhang current_space->local_remaining -= apnz; 279598bc09dSHong Zhang } 280598bc09dSHong Zhang 281598bc09dSHong Zhang /* Allocate space for apj, initialize apj, and */ 282598bc09dSHong Zhang /* destroy list of free space and other temporary array(s) */ 2839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(api[am] + 1, &ptap->apj)); 284a1a4e84aSHong Zhang apj = ptap->apj; 2859566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj)); 2869566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 287598bc09dSHong Zhang 288f84c536bSHong Zhang /* malloc apa to store dense row A[i,:]*P */ 2899566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(pN, &ptap->apa)); 290f84c536bSHong Zhang 2914222ddf1SHong Zhang /* set and assemble symbolic parallel matrix C */ 2924222ddf1SHong Zhang /*---------------------------------------------*/ 2939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 2949566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 295a2f3521dSMark F. Adams 2969566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 2979566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 2989566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 299d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 30017f75172Sandi selinger 3019566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 3029566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3039566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3049566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 305598bc09dSHong Zhang 3064222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 3074222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 308598bc09dSHong Zhang 3094222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 3106718818eSStefano Zampini C->product->data = ptap; 3116718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_MatMatMult; 312598bc09dSHong Zhang 313bfcd1a73SHong Zhang /* set MatInfo */ 314118727c9SMark F. Adams afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 315bfcd1a73SHong Zhang if (afill < 1.0) afill = 1.0; 3164222ddf1SHong Zhang C->info.mallocs = nspacedouble; 3174222ddf1SHong Zhang C->info.fill_ratio_given = fill; 3184222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 319bfcd1a73SHong Zhang 320bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO) 321bfcd1a73SHong Zhang if (api[am]) { 3229566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 3239566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 324bfcd1a73SHong Zhang } else { 3259566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 326bfcd1a73SHong Zhang } 327bfcd1a73SHong Zhang #endif 328598bc09dSHong Zhang PetscFunctionReturn(0); 329598bc09dSHong Zhang } 330598bc09dSHong Zhang 3314222ddf1SHong Zhang /* ------------------------------------------------------- */ 3326718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat); 3336718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat, Mat, Mat); 3346718818eSStefano Zampini 3359371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C) { 3364222ddf1SHong Zhang Mat_Product *product = C->product; 3374222ddf1SHong Zhang Mat A = product->A, B = product->B; 3389123193aSHong Zhang 3399123193aSHong Zhang PetscFunctionBegin; 3404222ddf1SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) 34198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 3424222ddf1SHong Zhang 3434222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense; 3444222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 3459123193aSHong Zhang PetscFunctionReturn(0); 3469123193aSHong Zhang } 3474222ddf1SHong Zhang /* -------------------------------------------------------------------- */ 3489371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C) { 3494222ddf1SHong Zhang Mat_Product *product = C->product; 3504222ddf1SHong Zhang Mat A = product->A, B = product->B; 3514222ddf1SHong Zhang 3524222ddf1SHong Zhang PetscFunctionBegin; 3534222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 35498921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 3554222ddf1SHong Zhang 3564222ddf1SHong Zhang C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense; 3574222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB; 3584222ddf1SHong Zhang PetscFunctionReturn(0); 3594222ddf1SHong Zhang } 3604222ddf1SHong Zhang 3614222ddf1SHong Zhang /* --------------------------------------------------------------------- */ 3629371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C) { 3634222ddf1SHong Zhang Mat_Product *product = C->product; 3644222ddf1SHong Zhang 3654222ddf1SHong Zhang PetscFunctionBegin; 3664222ddf1SHong Zhang switch (product->type) { 3679371c9d4SSatish Balay case MATPRODUCT_AB: PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C)); break; 3689371c9d4SSatish Balay case MATPRODUCT_AtB: PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C)); break; 3699371c9d4SSatish Balay default: break; 3704222ddf1SHong Zhang } 3714222ddf1SHong Zhang PetscFunctionReturn(0); 3724222ddf1SHong Zhang } 3734222ddf1SHong Zhang /* ------------------------------------------------------- */ 3749123193aSHong Zhang 3754324174eSBarry Smith typedef struct { 3765ea7661aSPierre Jolivet Mat workB, workB1; 3774324174eSBarry Smith MPI_Request *rwaits, *swaits; 37887753ddeSHong Zhang PetscInt nsends, nrecvs; 37987753ddeSHong Zhang MPI_Datatype *stype, *rtype; 3806718818eSStefano Zampini PetscInt blda; 3814324174eSBarry Smith } MPIAIJ_MPIDense; 3824324174eSBarry Smith 3839371c9d4SSatish Balay PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void *ctx) { 3844324174eSBarry Smith MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense *)ctx; 38587753ddeSHong Zhang PetscInt i; 3864324174eSBarry Smith 3874324174eSBarry Smith PetscFunctionBegin; 3889566063dSJacob Faibussowitsch PetscCall(MatDestroy(&contents->workB)); 3899566063dSJacob Faibussowitsch PetscCall(MatDestroy(&contents->workB1)); 390*48a46eb9SPierre Jolivet for (i = 0; i < contents->nsends; i++) PetscCallMPI(MPI_Type_free(&contents->stype[i])); 391*48a46eb9SPierre Jolivet for (i = 0; i < contents->nrecvs; i++) PetscCallMPI(MPI_Type_free(&contents->rtype[i])); 3929566063dSJacob Faibussowitsch PetscCall(PetscFree4(contents->stype, contents->rtype, contents->rwaits, contents->swaits)); 3939566063dSJacob Faibussowitsch PetscCall(PetscFree(contents)); 3944324174eSBarry Smith PetscFunctionReturn(0); 3954324174eSBarry Smith } 3964324174eSBarry Smith 3979371c9d4SSatish Balay static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) { 398f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 399b45e3bf4SStefano Zampini PetscInt nz = aij->B->cmap->n, nsends, nrecvs, i, nrows_to, j, blda, m, M, n, N; 4004324174eSBarry Smith MPIAIJ_MPIDense *contents; 4014324174eSBarry Smith VecScatter ctx = aij->Mvctx; 4025ea7661aSPierre Jolivet PetscInt Am = A->rmap->n, Bm = B->rmap->n, BN = B->cmap->N, Bbn, Bbn1, bs, nrows_from, numBb; 40387753ddeSHong Zhang MPI_Comm comm; 40487753ddeSHong Zhang MPI_Datatype type1, *stype, *rtype; 40587753ddeSHong Zhang const PetscInt *sindices, *sstarts, *rstarts; 40687753ddeSHong Zhang PetscMPIInt *disp; 4076718818eSStefano Zampini PetscBool cisdense; 4089123193aSHong Zhang 4099123193aSHong Zhang PetscFunctionBegin; 4106718818eSStefano Zampini MatCheckProduct(C, 4); 41128b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 4129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 4139566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)C, MATMPIDENSE, &cisdense)); 414*48a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)B)->type_name)); 4159566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(C, &m, &n)); 4169566063dSJacob Faibussowitsch PetscCall(MatGetSize(C, &M, &N)); 417*48a46eb9SPierre Jolivet if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) PetscCall(MatSetSizes(C, Am, B->cmap->n, A->rmap->N, BN)); 4189566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 4199566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 4209566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &blda)); 4219566063dSJacob Faibussowitsch PetscCall(PetscNew(&contents)); 4224324174eSBarry Smith 4239566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL)); 4249566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL)); 42587753ddeSHong Zhang 42687753ddeSHong Zhang /* Create column block of B and C for memory scalability when BN is too large */ 42787753ddeSHong Zhang /* Estimate Bbn, column size of Bb */ 42887753ddeSHong Zhang if (nz) { 42987753ddeSHong Zhang Bbn1 = 2 * Am * BN / nz; 430da7cbbe7SHong Zhang if (!Bbn1) Bbn1 = 1; 43187753ddeSHong Zhang } else Bbn1 = BN; 43287753ddeSHong Zhang 43387753ddeSHong Zhang bs = PetscAbs(B->cmap->bs); 43487753ddeSHong Zhang Bbn1 = Bbn1 / bs * bs; /* Bbn1 is a multiple of bs */ 43587753ddeSHong Zhang if (Bbn1 > BN) Bbn1 = BN; 4369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&Bbn1, &Bbn, 1, MPIU_INT, MPI_MAX, comm)); 43787753ddeSHong Zhang 43887753ddeSHong Zhang /* Enable runtime option for Bbn */ 439d0609cedSBarry Smith PetscOptionsBegin(comm, ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 4409566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-matmatmult_Bbn", "Number of columns in Bb", "MatMatMult", Bbn, &Bbn, NULL)); 441d0609cedSBarry Smith PetscOptionsEnd(); 4426718818eSStefano Zampini Bbn = PetscMin(Bbn, BN); 44387753ddeSHong Zhang 4446718818eSStefano Zampini if (Bbn > 0 && Bbn < BN) { 4455ea7661aSPierre Jolivet numBb = BN / Bbn; 4465ea7661aSPierre Jolivet Bbn1 = BN - numBb * Bbn; 4475ea7661aSPierre Jolivet } else numBb = 0; 44887753ddeSHong Zhang 4495ea7661aSPierre Jolivet if (numBb) { 4509566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n", BN, Bbn, numBb)); 4515ea7661aSPierre Jolivet if (Bbn1) { /* Create workB1 for the remaining columns */ 4529566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n", BN, Bbn1)); 45387753ddeSHong Zhang /* Create work matrix used to store off processor rows of B needed for local product */ 4549566063dSJacob Faibussowitsch PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn1, NULL, &contents->workB1)); 4555ea7661aSPierre Jolivet } else contents->workB1 = NULL; 45687753ddeSHong Zhang } 45787753ddeSHong Zhang 45887753ddeSHong Zhang /* Create work matrix used to store off processor rows of B needed for local product */ 4599566063dSJacob Faibussowitsch PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn, NULL, &contents->workB)); 46087753ddeSHong Zhang 46187753ddeSHong Zhang /* Use MPI derived data type to reduce memory required by the send/recv buffers */ 4629566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(nsends, &stype, nrecvs, &rtype, nrecvs, &contents->rwaits, nsends, &contents->swaits)); 46387753ddeSHong Zhang contents->stype = stype; 46487753ddeSHong Zhang contents->nsends = nsends; 46587753ddeSHong Zhang 46687753ddeSHong Zhang contents->rtype = rtype; 46787753ddeSHong Zhang contents->nrecvs = nrecvs; 4686718818eSStefano Zampini contents->blda = blda; 46987753ddeSHong Zhang 4709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bm + 1, &disp)); 47187753ddeSHong Zhang for (i = 0; i < nsends; i++) { 47287753ddeSHong Zhang nrows_to = sstarts[i + 1] - sstarts[i]; 473b45e3bf4SStefano Zampini for (j = 0; j < nrows_to; j++) disp[j] = sindices[sstarts[i] + j]; /* rowB to be sent */ 4749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_indexed_block(nrows_to, 1, disp, MPIU_SCALAR, &type1)); 4759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(type1, 0, blda * sizeof(PetscScalar), &stype[i])); 4769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&stype[i])); 4779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&type1)); 47887753ddeSHong Zhang } 47987753ddeSHong Zhang 48087753ddeSHong Zhang for (i = 0; i < nrecvs; i++) { 48187753ddeSHong Zhang /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */ 48287753ddeSHong Zhang nrows_from = rstarts[i + 1] - rstarts[i]; 48387753ddeSHong Zhang disp[0] = 0; 4849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_indexed_block(1, nrows_from, disp, MPIU_SCALAR, &type1)); 4859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(type1, 0, nz * sizeof(PetscScalar), &rtype[i])); 4869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&rtype[i])); 4879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&type1)); 48887753ddeSHong Zhang } 48987753ddeSHong Zhang 4909566063dSJacob Faibussowitsch PetscCall(PetscFree(disp)); 4919566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL)); 4929566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL)); 4939566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 4949566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 4959566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 4969566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 4976718818eSStefano Zampini 4986718818eSStefano Zampini C->product->data = contents; 4996718818eSStefano Zampini C->product->destroy = MatMPIAIJ_MPIDenseDestroy; 5004222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense; 5019123193aSHong Zhang PetscFunctionReturn(0); 5029123193aSHong Zhang } 5039123193aSHong Zhang 50493aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat, Mat, Mat, const PetscBool); 505f32d5d43SBarry Smith /* 5062636ff26SBarry Smith Performs an efficient scatter on the rows of B needed by this process; this is 5072636ff26SBarry Smith a modification of the VecScatterBegin_() routines. 50887753ddeSHong Zhang 50987753ddeSHong Zhang Input: Bbidx = 0: B = Bb 51087753ddeSHong Zhang = 1: B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense() 511f32d5d43SBarry Smith */ 5129371c9d4SSatish Balay PetscErrorCode MatMPIDenseScatter(Mat A, Mat B, PetscInt Bbidx, Mat C, Mat *outworkB) { 513f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 5141683a169SBarry Smith const PetscScalar *b; 51587753ddeSHong Zhang PetscScalar *rvalues; 516f32d5d43SBarry Smith VecScatter ctx = aij->Mvctx; 51787753ddeSHong Zhang const PetscInt *sindices, *sstarts, *rstarts; 5183515ee7fSJunchao Zhang const PetscMPIInt *sprocs, *rprocs; 5196718818eSStefano Zampini PetscInt i, nsends, nrecvs; 520f32d5d43SBarry Smith MPI_Request *swaits, *rwaits; 521ce94432eSBarry Smith MPI_Comm comm; 5226718818eSStefano Zampini PetscMPIInt tag = ((PetscObject)ctx)->tag, ncols = B->cmap->N, nrows = aij->B->cmap->n, nsends_mpi, nrecvs_mpi; 5234324174eSBarry Smith MPIAIJ_MPIDense *contents; 5244324174eSBarry Smith Mat workB; 52587753ddeSHong Zhang MPI_Datatype *stype, *rtype; 5266718818eSStefano Zampini PetscInt blda; 527f32d5d43SBarry Smith 528f32d5d43SBarry Smith PetscFunctionBegin; 5296718818eSStefano Zampini MatCheckProduct(C, 4); 53028b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 5316718818eSStefano Zampini contents = (MPIAIJ_MPIDense *)C->product->data; 5329566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL /*bs*/)); 5339566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL /*bs*/)); 5349566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends, &nsends_mpi)); 5359566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nrecvs, &nrecvs_mpi)); 536b45e3bf4SStefano Zampini if (Bbidx == 0) workB = *outworkB = contents->workB; 537b45e3bf4SStefano Zampini else workB = *outworkB = contents->workB1; 53808401ef6SPierre Jolivet PetscCheck(nrows == workB->rmap->n, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d", workB->cmap->n, nrows); 5393515ee7fSJunchao Zhang swaits = contents->swaits; 5403515ee7fSJunchao Zhang rwaits = contents->rwaits; 541f32d5d43SBarry Smith 5429566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &b)); 5439566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &blda)); 54408401ef6SPierre Jolivet PetscCheck(blda == contents->blda, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT, blda, contents->blda); 5459566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(workB, &rvalues)); 546f32d5d43SBarry Smith 54787753ddeSHong Zhang /* Post recv, use MPI derived data type to save memory */ 5489566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 54987753ddeSHong Zhang rtype = contents->rtype; 550*48a46eb9SPierre Jolivet for (i = 0; i < nrecvs; i++) PetscCallMPI(MPI_Irecv(rvalues + (rstarts[i] - rstarts[0]), ncols, rtype[i], rprocs[i], tag, comm, rwaits + i)); 551f32d5d43SBarry Smith 55287753ddeSHong Zhang stype = contents->stype; 553*48a46eb9SPierre Jolivet for (i = 0; i < nsends; i++) PetscCallMPI(MPI_Isend(b, ncols, stype[i], sprocs[i], tag, comm, swaits + i)); 5542636ff26SBarry Smith 5559566063dSJacob Faibussowitsch if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi, rwaits, MPI_STATUSES_IGNORE)); 5569566063dSJacob Faibussowitsch if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi, swaits, MPI_STATUSES_IGNORE)); 557f32d5d43SBarry Smith 5589566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL)); 5599566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL)); 5609566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &b)); 5619566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(workB, &rvalues)); 56287753ddeSHong Zhang PetscFunctionReturn(0); 56387753ddeSHong Zhang } 564f32d5d43SBarry Smith 5659371c9d4SSatish Balay static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A, Mat B, Mat C) { 566f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 567f32d5d43SBarry Smith Mat_MPIDense *bdense = (Mat_MPIDense *)B->data; 568f32d5d43SBarry Smith Mat_MPIDense *cdense = (Mat_MPIDense *)C->data; 569f32d5d43SBarry Smith Mat workB; 57087753ddeSHong Zhang MPIAIJ_MPIDense *contents; 5719123193aSHong Zhang 5729123193aSHong Zhang PetscFunctionBegin; 5736718818eSStefano Zampini MatCheckProduct(C, 3); 57428b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 5756718818eSStefano Zampini contents = (MPIAIJ_MPIDense *)C->product->data; 576f32d5d43SBarry Smith /* diagonal block of A times all local rows of B */ 5775ea7661aSPierre Jolivet /* TODO: this calls a symbolic multiplication every time, which could be avoided */ 5789566063dSJacob Faibussowitsch PetscCall(MatMatMult(aij->A, bdense->A, MAT_REUSE_MATRIX, PETSC_DEFAULT, &cdense->A)); 5795ea7661aSPierre Jolivet if (contents->workB->cmap->n == B->cmap->N) { 58087753ddeSHong Zhang /* get off processor parts of B needed to complete C=A*B */ 5819566063dSJacob Faibussowitsch PetscCall(MatMPIDenseScatter(A, B, 0, C, &workB)); 582f32d5d43SBarry Smith 583f32d5d43SBarry Smith /* off-diagonal block of A times nonlocal rows of B */ 5849566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE)); 58587753ddeSHong Zhang } else { 5865ea7661aSPierre Jolivet Mat Bb, Cb; 5875ea7661aSPierre Jolivet PetscInt BN = B->cmap->N, n = contents->workB->cmap->n, i; 588664c1e85SStefano Zampini PetscBool ccpu; 58987753ddeSHong Zhang 59008401ef6SPierre Jolivet PetscCheck(n > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Column block size %" PetscInt_FMT " must be positive", n); 591664c1e85SStefano Zampini /* Prevent from unneeded copies back and forth from the GPU 592664c1e85SStefano Zampini when getting and restoring the submatrix 593664c1e85SStefano Zampini We need a proper GPU code for AIJ * dense in parallel */ 5949566063dSJacob Faibussowitsch PetscCall(MatBoundToCPU(C, &ccpu)); 5959566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(C, PETSC_TRUE)); 5965ea7661aSPierre Jolivet for (i = 0; i < BN; i += n) { 597a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(B, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Bb)); 598a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(C, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Cb)); 59987753ddeSHong Zhang 6005ea7661aSPierre Jolivet /* get off processor parts of B needed to complete C=A*B */ 6019566063dSJacob Faibussowitsch PetscCall(MatMPIDenseScatter(A, Bb, (i + n) > BN, C, &workB)); 6025ea7661aSPierre Jolivet 6035ea7661aSPierre Jolivet /* off-diagonal block of A times nonlocal rows of B */ 6045ea7661aSPierre Jolivet cdense = (Mat_MPIDense *)Cb->data; 6059566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE)); 6069566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(B, &Bb)); 6079566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(C, &Cb)); 60887753ddeSHong Zhang } 6099566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(C, ccpu)); 61087753ddeSHong Zhang } 6119123193aSHong Zhang PetscFunctionReturn(0); 6129123193aSHong Zhang } 613cf1a0672SHong Zhang 6149371c9d4SSatish Balay PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A, Mat P, Mat C) { 615cf1a0672SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data; 616cf1a0672SHong Zhang Mat_SeqAIJ *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data; 617cf1a0672SHong Zhang Mat_SeqAIJ *cd = (Mat_SeqAIJ *)(c->A)->data, *co = (Mat_SeqAIJ *)(c->B)->data; 618cf1a0672SHong Zhang PetscInt *adi = ad->i, *adj, *aoi = ao->i, *aoj; 619cf1a0672SHong Zhang PetscScalar *ada, *aoa, *cda = cd->a, *coa = co->a; 620cf1a0672SHong Zhang Mat_SeqAIJ *p_loc, *p_oth; 621cf1a0672SHong Zhang PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *pj; 62229825010SHong Zhang PetscScalar *pa_loc, *pa_oth, *pa, valtmp, *ca; 62329825010SHong Zhang PetscInt cm = C->rmap->n, anz, pnz; 6246718818eSStefano Zampini Mat_APMPI *ptap; 62580da8df7SHong Zhang PetscScalar *apa_sparse; 626ce496241SStefano Zampini const PetscScalar *dummy; 627cf1a0672SHong Zhang PetscInt *api, *apj, *apJ, i, j, k, row; 62829825010SHong Zhang PetscInt cstart = C->cmap->rstart; 62929825010SHong Zhang PetscInt cdnz, conz, k0, k1, nextp; 630a7c7454dSHong Zhang MPI_Comm comm; 631a7c7454dSHong Zhang PetscMPIInt size; 6321634b032SHong Zhang 6331634b032SHong Zhang PetscFunctionBegin; 6346718818eSStefano Zampini MatCheckProduct(C, 3); 6356718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 63628b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 6379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 6389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 639aed4548fSBarry Smith PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()"); 640a7c7454dSHong Zhang 64165e4b4d4SStefano Zampini /* flag CPU mask for C */ 64265e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 64365e4b4d4SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 64465e4b4d4SStefano Zampini if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU; 64565e4b4d4SStefano Zampini if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU; 64665e4b4d4SStefano Zampini #endif 64780da8df7SHong Zhang apa_sparse = ptap->apa; 64880da8df7SHong Zhang 649cf1a0672SHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */ 650cf1a0672SHong Zhang /*-----------------------------------------------------*/ 651cf1a0672SHong Zhang /* update numerical values of P_oth and P_loc */ 6529566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 6539566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc)); 654cf1a0672SHong Zhang 655cf1a0672SHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 656cf1a0672SHong Zhang /*----------------------------------------------------------*/ 657cf1a0672SHong Zhang /* get data from symbolic products */ 658cf1a0672SHong Zhang p_loc = (Mat_SeqAIJ *)(ptap->P_loc)->data; 6599371c9d4SSatish Balay pi_loc = p_loc->i; 6609371c9d4SSatish Balay pj_loc = p_loc->j; 6619371c9d4SSatish Balay pa_loc = p_loc->a; 662a7c7454dSHong Zhang if (size > 1) { 663a7c7454dSHong Zhang p_oth = (Mat_SeqAIJ *)(ptap->P_oth)->data; 6649371c9d4SSatish Balay pi_oth = p_oth->i; 6659371c9d4SSatish Balay pj_oth = p_oth->j; 6669371c9d4SSatish Balay pa_oth = p_oth->a; 66720e3dc75SHong Zhang } else { 6689371c9d4SSatish Balay p_oth = NULL; 6699371c9d4SSatish Balay pi_oth = NULL; 6709371c9d4SSatish Balay pj_oth = NULL; 6719371c9d4SSatish Balay pa_oth = NULL; 672a7c7454dSHong Zhang } 673cf1a0672SHong Zhang 674ce496241SStefano Zampini /* trigger copy to CPU */ 6759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy)); 6769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy)); 6779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy)); 6789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy)); 67929825010SHong Zhang api = ptap->api; 68029825010SHong Zhang apj = ptap->apj; 681cf1a0672SHong Zhang for (i = 0; i < cm; i++) { 68229825010SHong Zhang apJ = apj + api[i]; 68329825010SHong Zhang 684cf1a0672SHong Zhang /* diagonal portion of A */ 685cf1a0672SHong Zhang anz = adi[i + 1] - adi[i]; 686cf1a0672SHong Zhang adj = ad->j + adi[i]; 687cf1a0672SHong Zhang ada = ad->a + adi[i]; 688cf1a0672SHong Zhang for (j = 0; j < anz; j++) { 689cf1a0672SHong Zhang row = adj[j]; 690cf1a0672SHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 691cf1a0672SHong Zhang pj = pj_loc + pi_loc[row]; 692cf1a0672SHong Zhang pa = pa_loc + pi_loc[row]; 69329825010SHong Zhang /* perform sparse axpy */ 694cf1a0672SHong Zhang valtmp = ada[j]; 69529825010SHong Zhang nextp = 0; 69629825010SHong Zhang for (k = 0; nextp < pnz; k++) { 69729825010SHong Zhang if (apJ[k] == pj[nextp]) { /* column of AP == column of P */ 69829825010SHong Zhang apa_sparse[k] += valtmp * pa[nextp++]; 69929825010SHong Zhang } 7001634b032SHong Zhang } 7019566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * pnz)); 702cf1a0672SHong Zhang } 7031634b032SHong Zhang 704cf1a0672SHong Zhang /* off-diagonal portion of A */ 705cf1a0672SHong Zhang anz = aoi[i + 1] - aoi[i]; 706cf1a0672SHong Zhang aoj = ao->j + aoi[i]; 707cf1a0672SHong Zhang aoa = ao->a + aoi[i]; 708cf1a0672SHong Zhang for (j = 0; j < anz; j++) { 709cf1a0672SHong Zhang row = aoj[j]; 710cf1a0672SHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 711cf1a0672SHong Zhang pj = pj_oth + pi_oth[row]; 712cf1a0672SHong Zhang pa = pa_oth + pi_oth[row]; 71329825010SHong Zhang /* perform sparse axpy */ 714cf1a0672SHong Zhang valtmp = aoa[j]; 71529825010SHong Zhang nextp = 0; 71629825010SHong Zhang for (k = 0; nextp < pnz; k++) { 71729825010SHong Zhang if (apJ[k] == pj[nextp]) { /* column of AP == column of P */ 71829825010SHong Zhang apa_sparse[k] += valtmp * pa[nextp++]; 71929825010SHong Zhang } 720cf1a0672SHong Zhang } 7219566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * pnz)); 722cf1a0672SHong Zhang } 7231634b032SHong Zhang 724cf1a0672SHong Zhang /* set values in C */ 725cf1a0672SHong Zhang cdnz = cd->i[i + 1] - cd->i[i]; 726cf1a0672SHong Zhang conz = co->i[i + 1] - co->i[i]; 7271634b032SHong Zhang 728910cf402Sprj- /* 1st off-diagonal part of C */ 729cf1a0672SHong Zhang ca = coa + co->i[i]; 730cf1a0672SHong Zhang k = 0; 731cf1a0672SHong Zhang for (k0 = 0; k0 < conz; k0++) { 732cf1a0672SHong Zhang if (apJ[k] >= cstart) break; 73329825010SHong Zhang ca[k0] = apa_sparse[k]; 73429825010SHong Zhang apa_sparse[k] = 0.0; 735cf1a0672SHong Zhang k++; 736cf1a0672SHong Zhang } 7371634b032SHong Zhang 738cf1a0672SHong Zhang /* diagonal part of C */ 739cf1a0672SHong Zhang ca = cda + cd->i[i]; 740cf1a0672SHong Zhang for (k1 = 0; k1 < cdnz; k1++) { 74129825010SHong Zhang ca[k1] = apa_sparse[k]; 74229825010SHong Zhang apa_sparse[k] = 0.0; 743cf1a0672SHong Zhang k++; 744cf1a0672SHong Zhang } 745cf1a0672SHong Zhang 746910cf402Sprj- /* 2nd off-diagonal part of C */ 747cf1a0672SHong Zhang ca = coa + co->i[i]; 748cf1a0672SHong Zhang for (; k0 < conz; k0++) { 74929825010SHong Zhang ca[k0] = apa_sparse[k]; 75029825010SHong Zhang apa_sparse[k] = 0.0; 751cf1a0672SHong Zhang k++; 752cf1a0672SHong Zhang } 753cf1a0672SHong Zhang } 7549566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 7559566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 756cf1a0672SHong Zhang PetscFunctionReturn(0); 757cf1a0672SHong Zhang } 758cf1a0672SHong Zhang 7590fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */ 7609371c9d4SSatish Balay PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A, Mat P, PetscReal fill, Mat C) { 761ce94432eSBarry Smith MPI_Comm comm; 762a7c7454dSHong Zhang PetscMPIInt size; 7633cdca5ebSHong Zhang Mat_APMPI *ptap; 7640298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 7656718818eSStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 766cf1a0672SHong Zhang Mat_SeqAIJ *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data, *p_loc, *p_oth; 7677dbaa2c6Sandi selinger PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz; 768cf1a0672SHong Zhang PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart; 7698c78258cSHong Zhang PetscInt i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi, *lnk, apnz_max = 1; 770e5ab8c0aSKarl Rupp PetscInt am = A->rmap->n, pn = P->cmap->n, pm = P->rmap->n, lsize = pn + 20; 771cf1a0672SHong Zhang PetscReal afill; 772b92f168fSBarry Smith MatType mtype; 773cf1a0672SHong Zhang 774cf1a0672SHong Zhang PetscFunctionBegin; 7756718818eSStefano Zampini MatCheckProduct(C, 4); 77628b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 7779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 7789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 779a7c7454dSHong Zhang 7803cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 7819566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 782cf1a0672SHong Zhang 783cf1a0672SHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 7849566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 78519f0e57aSHong Zhang 786cf1a0672SHong Zhang /* get P_loc by taking all local rows of P */ 7879566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 788cf1a0672SHong Zhang 789cf1a0672SHong Zhang p_loc = (Mat_SeqAIJ *)(ptap->P_loc)->data; 7909371c9d4SSatish Balay pi_loc = p_loc->i; 7919371c9d4SSatish Balay pj_loc = p_loc->j; 792a7c7454dSHong Zhang if (size > 1) { 793a7c7454dSHong Zhang p_oth = (Mat_SeqAIJ *)(ptap->P_oth)->data; 7949371c9d4SSatish Balay pi_oth = p_oth->i; 7959371c9d4SSatish Balay pj_oth = p_oth->j; 796968382fdSHong Zhang } else { 79720e3dc75SHong Zhang p_oth = NULL; 7989371c9d4SSatish Balay pi_oth = NULL; 7999371c9d4SSatish Balay pj_oth = NULL; 800a7c7454dSHong Zhang } 801cf1a0672SHong Zhang 802cf1a0672SHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 803cf1a0672SHong Zhang /*-------------------------------------------------------------------*/ 8049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &api)); 805cf1a0672SHong Zhang ptap->api = api; 806cf1a0672SHong Zhang api[0] = 0; 807cf1a0672SHong Zhang 8089566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(lsize, &lnk)); 809cf1a0672SHong Zhang 810cf1a0672SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 8119566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space)); 812cf1a0672SHong Zhang current_space = free_space; 813d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 814cf1a0672SHong Zhang for (i = 0; i < am; i++) { 815cf1a0672SHong Zhang /* diagonal portion of A */ 816cf1a0672SHong Zhang nzi = adi[i + 1] - adi[i]; 817cf1a0672SHong Zhang for (j = 0; j < nzi; j++) { 818cf1a0672SHong Zhang row = *adj++; 819cf1a0672SHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 820cf1a0672SHong Zhang Jptr = pj_loc + pi_loc[row]; 8218a210135Sandi selinger /* Expand list if it is not long enough */ 8228328dd82Sandi selinger if (pnz + apnz_max > lsize) { 8238328dd82Sandi selinger lsize = pnz + apnz_max; 8249566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk)); 8258a210135Sandi selinger } 826cf1a0672SHong Zhang /* add non-zero cols of P into the sorted linked list lnk */ 8279566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk)); 8288a210135Sandi selinger apnz = *lnk; /* The first element in the list is the number of items in the list */ 8298a210135Sandi selinger api[i + 1] = api[i] + apnz; 8308c78258cSHong Zhang if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */ 831cf1a0672SHong Zhang } 832cf1a0672SHong Zhang /* off-diagonal portion of A */ 833cf1a0672SHong Zhang nzi = aoi[i + 1] - aoi[i]; 834cf1a0672SHong Zhang for (j = 0; j < nzi; j++) { 835cf1a0672SHong Zhang row = *aoj++; 836cf1a0672SHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 837cf1a0672SHong Zhang Jptr = pj_oth + pi_oth[row]; 8388a210135Sandi selinger /* Expand list if it is not long enough */ 8398328dd82Sandi selinger if (pnz + apnz_max > lsize) { 8408328dd82Sandi selinger lsize = pnz + apnz_max; 8419566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk)); 8428a210135Sandi selinger } 8438a210135Sandi selinger /* add non-zero cols of P into the sorted linked list lnk */ 8449566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk)); 8458a210135Sandi selinger apnz = *lnk; /* The first element in the list is the number of items in the list */ 8468a210135Sandi selinger api[i + 1] = api[i] + apnz; 8478c78258cSHong Zhang if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */ 848cf1a0672SHong Zhang } 8498c78258cSHong Zhang 8508c78258cSHong Zhang /* add missing diagonal entry */ 8518c78258cSHong Zhang if (C->force_diagonals) { 8528c78258cSHong Zhang j = i + rstart; /* column index */ 8539566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1, &j, lnk)); 8548c78258cSHong Zhang } 8558c78258cSHong Zhang 856f84c536bSHong Zhang apnz = *lnk; 857cf1a0672SHong Zhang api[i + 1] = api[i] + apnz; 8588a210135Sandi selinger if (apnz > apnz_max) apnz_max = apnz; 859cf1a0672SHong Zhang 860cf1a0672SHong Zhang /* if free space is not available, double the total space in the list */ 861cf1a0672SHong Zhang if (current_space->local_remaining < apnz) { 8629566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), ¤t_space)); 863cf1a0672SHong Zhang nspacedouble++; 864cf1a0672SHong Zhang } 865cf1a0672SHong Zhang 866cf1a0672SHong Zhang /* Copy data into free space, then initialize lnk */ 8679566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(apnz, current_space->array, lnk)); 8689566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz)); 8692205254eSKarl Rupp 870cf1a0672SHong Zhang current_space->array += apnz; 871cf1a0672SHong Zhang current_space->local_used += apnz; 872cf1a0672SHong Zhang current_space->local_remaining -= apnz; 873cf1a0672SHong Zhang } 874cf1a0672SHong Zhang 875cf1a0672SHong Zhang /* Allocate space for apj, initialize apj, and */ 876cf1a0672SHong Zhang /* destroy list of free space and other temporary array(s) */ 8779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(api[am] + 1, &ptap->apj)); 878cf1a0672SHong Zhang apj = ptap->apj; 8799566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj)); 8809566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 881cf1a0672SHong Zhang 8824222ddf1SHong Zhang /* create and assemble symbolic parallel matrix C */ 883cf1a0672SHong Zhang /*----------------------------------------------------*/ 8849566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 8859566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 8869566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 8879566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 8889566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 889d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 890cf1a0672SHong Zhang 8914222ddf1SHong Zhang /* malloc apa for assembly C */ 8929566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(apnz_max, &ptap->apa)); 89317f75172Sandi selinger 8949566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 8959566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 8969566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 8979566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 898cf1a0672SHong Zhang 8994222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ; 9004222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 901cf1a0672SHong Zhang 9024222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 9036718818eSStefano Zampini C->product->data = ptap; 9046718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_MatMatMult; 905cf1a0672SHong Zhang 906cf1a0672SHong Zhang /* set MatInfo */ 907118727c9SMark F. Adams afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 908cf1a0672SHong Zhang if (afill < 1.0) afill = 1.0; 9094222ddf1SHong Zhang C->info.mallocs = nspacedouble; 9104222ddf1SHong Zhang C->info.fill_ratio_given = fill; 9114222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 912cf1a0672SHong Zhang 913cf1a0672SHong Zhang #if defined(PETSC_USE_INFO) 914cf1a0672SHong Zhang if (api[am]) { 9159566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 9169566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 917cf1a0672SHong Zhang } else { 9189566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 919cf1a0672SHong Zhang } 920cf1a0672SHong Zhang #endif 9211634b032SHong Zhang PetscFunctionReturn(0); 9221634b032SHong Zhang } 923f96d37fcSHong Zhang 924a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication. */ 925a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the */ 926a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once. */ 9279371c9d4SSatish Balay static void Merge3SortedArrays(PetscInt size1, PetscInt *in1, PetscInt size2, PetscInt *in2, PetscInt size3, PetscInt *in3, PetscInt *size4, PetscInt *out) { 928a9d7e0ccSandi selinger int i = 0, j = 0, k = 0, l = 0; 929a9d7e0ccSandi selinger 930a9d7e0ccSandi selinger /* Traverse all three arrays */ 931a9d7e0ccSandi selinger while (i < size1 && j < size2 && k < size3) { 932a9d7e0ccSandi selinger if (in1[i] < in2[j] && in1[i] < in3[k]) { 933a9d7e0ccSandi selinger out[l++] = in1[i++]; 9349371c9d4SSatish Balay } else if (in2[j] < in1[i] && in2[j] < in3[k]) { 935a9d7e0ccSandi selinger out[l++] = in2[j++]; 9369371c9d4SSatish Balay } else if (in3[k] < in1[i] && in3[k] < in2[j]) { 937a9d7e0ccSandi selinger out[l++] = in3[k++]; 9389371c9d4SSatish Balay } else if (in1[i] == in2[j] && in1[i] < in3[k]) { 939a9d7e0ccSandi selinger out[l++] = in1[i]; 940a9d7e0ccSandi selinger i++, j++; 9419371c9d4SSatish Balay } else if (in1[i] == in3[k] && in1[i] < in2[j]) { 942a9d7e0ccSandi selinger out[l++] = in1[i]; 943a9d7e0ccSandi selinger i++, k++; 9449371c9d4SSatish Balay } else if (in3[k] == in2[j] && in2[j] < in1[i]) { 945a9d7e0ccSandi selinger out[l++] = in2[j]; 946a9d7e0ccSandi selinger k++, j++; 9479371c9d4SSatish Balay } else if (in1[i] == in2[j] && in1[i] == in3[k]) { 948a9d7e0ccSandi selinger out[l++] = in1[i]; 949a9d7e0ccSandi selinger i++, j++, k++; 950a9d7e0ccSandi selinger } 951a9d7e0ccSandi selinger } 952a9d7e0ccSandi selinger 953a9d7e0ccSandi selinger /* Traverse two remaining arrays */ 954a9d7e0ccSandi selinger while (i < size1 && j < size2) { 955a9d7e0ccSandi selinger if (in1[i] < in2[j]) { 956a9d7e0ccSandi selinger out[l++] = in1[i++]; 9579371c9d4SSatish Balay } else if (in1[i] > in2[j]) { 958a9d7e0ccSandi selinger out[l++] = in2[j++]; 9599371c9d4SSatish Balay } else { 960a9d7e0ccSandi selinger out[l++] = in1[i]; 961a9d7e0ccSandi selinger i++, j++; 962a9d7e0ccSandi selinger } 963a9d7e0ccSandi selinger } 964a9d7e0ccSandi selinger 965a9d7e0ccSandi selinger while (i < size1 && k < size3) { 966a9d7e0ccSandi selinger if (in1[i] < in3[k]) { 967a9d7e0ccSandi selinger out[l++] = in1[i++]; 9689371c9d4SSatish Balay } else if (in1[i] > in3[k]) { 969a9d7e0ccSandi selinger out[l++] = in3[k++]; 9709371c9d4SSatish Balay } else { 971a9d7e0ccSandi selinger out[l++] = in1[i]; 972a9d7e0ccSandi selinger i++, k++; 973a9d7e0ccSandi selinger } 974a9d7e0ccSandi selinger } 975a9d7e0ccSandi selinger 976a9d7e0ccSandi selinger while (k < size3 && j < size2) { 977a9d7e0ccSandi selinger if (in3[k] < in2[j]) { 978a9d7e0ccSandi selinger out[l++] = in3[k++]; 9799371c9d4SSatish Balay } else if (in3[k] > in2[j]) { 980a9d7e0ccSandi selinger out[l++] = in2[j++]; 9819371c9d4SSatish Balay } else { 982a9d7e0ccSandi selinger out[l++] = in3[k]; 983a9d7e0ccSandi selinger k++, j++; 984a9d7e0ccSandi selinger } 985a9d7e0ccSandi selinger } 986a9d7e0ccSandi selinger 987a9d7e0ccSandi selinger /* Traverse one remaining array */ 988a9d7e0ccSandi selinger while (i < size1) out[l++] = in1[i++]; 989a9d7e0ccSandi selinger while (j < size2) out[l++] = in2[j++]; 990a9d7e0ccSandi selinger while (k < size3) out[l++] = in3[k++]; 991a9d7e0ccSandi selinger 992a9d7e0ccSandi selinger *size4 = l; 993a9d7e0ccSandi selinger } 994a9d7e0ccSandi selinger 99573b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and */ 99673b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential) */ 99773b67375Sandi selinger /* matrix-matrix multiplications. */ 9989371c9d4SSatish Balay PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C) { 999a9d7e0ccSandi selinger MPI_Comm comm; 1000a9d7e0ccSandi selinger PetscMPIInt size; 10013cdca5ebSHong Zhang Mat_APMPI *ptap; 1002a9d7e0ccSandi selinger PetscFreeSpaceList free_space_diag = NULL, current_space = NULL; 1003a9d7e0ccSandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1004a9d7e0ccSandi selinger Mat_SeqAIJ *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data, *p_loc; 1005a9d7e0ccSandi selinger Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1006a9d7e0ccSandi selinger Mat_SeqAIJ *adpd_seq, *p_off, *aopoth_seq; 1007a9d7e0ccSandi selinger PetscInt adponz, adpdnz; 10087dbaa2c6Sandi selinger PetscInt *pi_loc, *dnz, *onz; 1009a9d7e0ccSandi selinger PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, rstart = A->rmap->rstart; 10109371c9d4SSatish Balay PetscInt *lnk, i, i1 = 0, pnz, row, *adpoi, *adpoj, *api, *adpoJ, *aopJ, *apJ, *Jptr, aopnz, nspacedouble = 0, j, nzi, *apj, apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj; 1011a016958eSandi selinger PetscInt am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n, p_colstart, p_colend; 1012a9d7e0ccSandi selinger PetscBT lnkbt; 1013a9d7e0ccSandi selinger PetscReal afill; 1014a9d7e0ccSandi selinger PetscMPIInt rank; 1015a9d7e0ccSandi selinger Mat adpd, aopoth; 1016b92f168fSBarry Smith MatType mtype; 1017e83e5f86SFande Kong const char *prefix; 1018a9d7e0ccSandi selinger 1019a9d7e0ccSandi selinger PetscFunctionBegin; 10206718818eSStefano Zampini MatCheckProduct(C, 4); 102128b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 10229566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 10239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 10249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 10259566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend)); 1026a9d7e0ccSandi selinger 10273cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 10289566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 1029a9d7e0ccSandi selinger 1030a9d7e0ccSandi selinger /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 10319566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 1032a9d7e0ccSandi selinger 1033a9d7e0ccSandi selinger /* get P_loc by taking all local rows of P */ 10349566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 1035a9d7e0ccSandi selinger 1036a9d7e0ccSandi selinger p_loc = (Mat_SeqAIJ *)(ptap->P_loc)->data; 1037a9d7e0ccSandi selinger pi_loc = p_loc->i; 1038a9d7e0ccSandi selinger 1039a9d7e0ccSandi selinger /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */ 10409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &api)); 10419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &adpoi)); 1042a9d7e0ccSandi selinger 1043a9d7e0ccSandi selinger adpoi[0] = 0; 1044a9d7e0ccSandi selinger ptap->api = api; 1045a9d7e0ccSandi selinger api[0] = 0; 1046a9d7e0ccSandi selinger 1047a9d7e0ccSandi selinger /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */ 10489566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt)); 1049d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 1050a9d7e0ccSandi selinger 1051a9d7e0ccSandi selinger /* Symbolic calc of A_loc_diag * P_loc_diag */ 10529566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 10539566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &adpd)); 10549566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 10559566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(adpd, prefix)); 10569566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(adpd, "inner_diag_")); 10574222ddf1SHong Zhang 10589566063dSJacob Faibussowitsch PetscCall(MatProductSetType(adpd, MATPRODUCT_AB)); 10599566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(adpd, "sorted")); 10609566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(adpd, fill)); 10619566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(adpd)); 10628c78258cSHong Zhang 10638c78258cSHong Zhang adpd->force_diagonals = C->force_diagonals; 10649566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic(adpd)); 10654222ddf1SHong Zhang 1066a9d7e0ccSandi selinger adpd_seq = (Mat_SeqAIJ *)((adpd)->data); 10679371c9d4SSatish Balay adpdi = adpd_seq->i; 10689371c9d4SSatish Balay adpdj = adpd_seq->j; 1069a9d7e0ccSandi selinger p_off = (Mat_SeqAIJ *)((p->B)->data); 10709371c9d4SSatish Balay poff_i = p_off->i; 10719371c9d4SSatish Balay poff_j = p_off->j; 1072a9d7e0ccSandi selinger 107373b67375Sandi selinger /* j_temp stores indices of a result row before they are added to the linked list */ 10749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pN + 2, &j_temp)); 1075a9d7e0ccSandi selinger 1076a9d7e0ccSandi selinger /* Symbolic calc of the A_diag * p_loc_off */ 1077a9d7e0ccSandi selinger /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 10789566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space_diag)); 1079a9d7e0ccSandi selinger current_space = free_space_diag; 1080a9d7e0ccSandi selinger 1081a9d7e0ccSandi selinger for (i = 0; i < am; i++) { 1082a9d7e0ccSandi selinger /* A_diag * P_loc_off */ 1083a9d7e0ccSandi selinger nzi = adi[i + 1] - adi[i]; 1084a9d7e0ccSandi selinger for (j = 0; j < nzi; j++) { 1085a9d7e0ccSandi selinger row = *adj++; 1086a9d7e0ccSandi selinger pnz = poff_i[row + 1] - poff_i[row]; 1087a9d7e0ccSandi selinger Jptr = poff_j + poff_i[row]; 10889371c9d4SSatish Balay for (i1 = 0; i1 < pnz; i1++) { j_temp[i1] = p->garray[Jptr[i1]]; } 1089a9d7e0ccSandi selinger /* add non-zero cols of P into the sorted linked list lnk */ 10909566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, j_temp, lnk, lnkbt)); 1091a9d7e0ccSandi selinger } 1092a9d7e0ccSandi selinger 1093a9d7e0ccSandi selinger adponz = lnk[0]; 1094a9d7e0ccSandi selinger adpoi[i + 1] = adpoi[i] + adponz; 1095a9d7e0ccSandi selinger 1096a9d7e0ccSandi selinger /* if free space is not available, double the total space in the list */ 1097a9d7e0ccSandi selinger if (current_space->local_remaining < adponz) { 10989566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz, current_space->total_array_size), ¤t_space)); 1099a9d7e0ccSandi selinger nspacedouble++; 1100a9d7e0ccSandi selinger } 1101a9d7e0ccSandi selinger 1102a9d7e0ccSandi selinger /* Copy data into free space, then initialize lnk */ 11039566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(pN, adponz, current_space->array, lnk, lnkbt)); 1104a9d7e0ccSandi selinger 1105a9d7e0ccSandi selinger current_space->array += adponz; 1106a9d7e0ccSandi selinger current_space->local_used += adponz; 1107a9d7e0ccSandi selinger current_space->local_remaining -= adponz; 1108a9d7e0ccSandi selinger } 1109a9d7e0ccSandi selinger 1110a9d7e0ccSandi selinger /* Symbolic calc of A_off * P_oth */ 11119566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(a->B, prefix)); 11129566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(a->B, "inner_offdiag_")); 11139566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &aopoth)); 11149566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth)); 1115a9d7e0ccSandi selinger aopoth_seq = (Mat_SeqAIJ *)((aopoth)->data); 11169371c9d4SSatish Balay aopothi = aopoth_seq->i; 11179371c9d4SSatish Balay aopothj = aopoth_seq->j; 1118a9d7e0ccSandi selinger 1119a9d7e0ccSandi selinger /* Allocate space for apj, adpj, aopj, ... */ 1120a9d7e0ccSandi selinger /* destroy lists of free space and other temporary array(s) */ 1121a9d7e0ccSandi selinger 11229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am] + 2, &ptap->apj)); 11239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(adpoi[am] + 2, &adpoj)); 1124a9d7e0ccSandi selinger 1125a9d7e0ccSandi selinger /* Copy from linked list to j-array */ 11269566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space_diag, adpoj)); 11279566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 1128a9d7e0ccSandi selinger 1129a9d7e0ccSandi selinger adpoJ = adpoj; 1130a9d7e0ccSandi selinger adpdJ = adpdj; 1131a9d7e0ccSandi selinger aopJ = aopothj; 1132a9d7e0ccSandi selinger apj = ptap->apj; 1133a9d7e0ccSandi selinger apJ = apj; /* still empty */ 1134a9d7e0ccSandi selinger 1135a9d7e0ccSandi selinger /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */ 1136a9d7e0ccSandi selinger /* A_diag * P_loc_diag to get A*P */ 1137a9d7e0ccSandi selinger for (i = 0; i < am; i++) { 1138a9d7e0ccSandi selinger aopnz = aopothi[i + 1] - aopothi[i]; 1139a9d7e0ccSandi selinger adponz = adpoi[i + 1] - adpoi[i]; 1140a9d7e0ccSandi selinger adpdnz = adpdi[i + 1] - adpdi[i]; 1141a9d7e0ccSandi selinger 1142a9d7e0ccSandi selinger /* Correct indices from A_diag*P_diag */ 11439371c9d4SSatish Balay for (i1 = 0; i1 < adpdnz; i1++) { adpdJ[i1] += p_colstart; } 1144a9d7e0ccSandi selinger /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */ 1145a9d7e0ccSandi selinger Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ); 11469566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, apJ, dnz, onz)); 1147a9d7e0ccSandi selinger 1148a9d7e0ccSandi selinger aopJ += aopnz; 1149a9d7e0ccSandi selinger adpoJ += adponz; 1150a9d7e0ccSandi selinger adpdJ += adpdnz; 1151a9d7e0ccSandi selinger apJ += apnz; 1152a9d7e0ccSandi selinger api[i + 1] = api[i] + apnz; 1153a9d7e0ccSandi selinger } 1154a9d7e0ccSandi selinger 1155a9d7e0ccSandi selinger /* malloc apa to store dense row A[i,:]*P */ 11569566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(pN + 2, &ptap->apa)); 1157a9d7e0ccSandi selinger 11584222ddf1SHong Zhang /* create and assemble symbolic parallel matrix C */ 11599566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 11609566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 11619566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 11629566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 11639566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 1164d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 116517f75172Sandi selinger 11669566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 11679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 11689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 11699566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 117017f75172Sandi selinger 11714222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 11724222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 1173a9d7e0ccSandi selinger 11744222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 11756718818eSStefano Zampini C->product->data = ptap; 11766718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_MatMatMult; 1177a9d7e0ccSandi selinger 1178a9d7e0ccSandi selinger /* set MatInfo */ 117973b67375Sandi selinger afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 118073b67375Sandi selinger if (afill < 1.0) afill = 1.0; 11814222ddf1SHong Zhang C->info.mallocs = nspacedouble; 11824222ddf1SHong Zhang C->info.fill_ratio_given = fill; 11834222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 1184a9d7e0ccSandi selinger 1185a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO) 1186a9d7e0ccSandi selinger if (api[am]) { 11879566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 11889566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 1189a9d7e0ccSandi selinger } else { 11909566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 1191a9d7e0ccSandi selinger } 1192a9d7e0ccSandi selinger #endif 1193a9d7e0ccSandi selinger 11949566063dSJacob Faibussowitsch PetscCall(MatDestroy(&aopoth)); 11959566063dSJacob Faibussowitsch PetscCall(MatDestroy(&adpd)); 11969566063dSJacob Faibussowitsch PetscCall(PetscFree(j_temp)); 11979566063dSJacob Faibussowitsch PetscCall(PetscFree(adpoj)); 11989566063dSJacob Faibussowitsch PetscCall(PetscFree(adpoi)); 1199a9d7e0ccSandi selinger PetscFunctionReturn(0); 1200a9d7e0ccSandi selinger } 1201a9d7e0ccSandi selinger 1202f96d37fcSHong Zhang /*-------------------------------------------------------------------------*/ 1203c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */ 12049371c9d4SSatish Balay PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P, Mat A, Mat C) { 12056718818eSStefano Zampini Mat_APMPI *ptap; 120660552ceaSHong Zhang Mat Pt; 1207c216dbf3SHong Zhang 1208c216dbf3SHong Zhang PetscFunctionBegin; 12096718818eSStefano Zampini MatCheckProduct(C, 3); 12106718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 121128b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 121228b400f6SJacob Faibussowitsch PetscCheck(ptap->Pt, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 121360552ceaSHong Zhang 121460552ceaSHong Zhang Pt = ptap->Pt; 12151cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(P, Pt)); 12169566063dSJacob Faibussowitsch PetscCall(MatTranspose(P, MAT_REUSE_MATRIX, &Pt)); 12179566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt, A, C)); 1218f96d37fcSHong Zhang PetscFunctionReturn(0); 1219f96d37fcSHong Zhang } 1220f96d37fcSHong Zhang 1221c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */ 12229371c9d4SSatish Balay PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, PetscReal fill, Mat C) { 12233cdca5ebSHong Zhang Mat_APMPI *ptap; 12246718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1225912837bbSHong Zhang MPI_Comm comm; 1226912837bbSHong Zhang PetscMPIInt size, rank; 1227912837bbSHong Zhang PetscFreeSpaceList free_space = NULL, current_space = NULL; 12284ede91e3SHong Zhang PetscInt pn = P->cmap->n, aN = A->cmap->N, an = A->cmap->n; 122969be949aSStefano Zampini PetscInt *lnk, i, k, nsend, rstart; 1230912837bbSHong Zhang PetscBT lnkbt; 1231ec4bef21SJose E. Roman PetscMPIInt tagi, tagj, *len_si, *len_s, *len_ri, nrecv; 1232ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted = 0; 12338c78258cSHong Zhang PetscInt **buf_rj, **buf_ri, **buf_ri_k, row, ncols, *cols; 12347f3e1f30SHong Zhang PetscInt len, proc, *dnz, *onz, *owners, nzi; 1235912837bbSHong Zhang PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci; 1236912837bbSHong Zhang MPI_Request *swaits, *rwaits; 1237912837bbSHong Zhang MPI_Status *sstatus, rstatus; 1238912837bbSHong Zhang PetscLayout rowmap; 1239912837bbSHong Zhang PetscInt *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */ 1240912837bbSHong Zhang PetscMPIInt *len_r, *id_r; /* array of length of comm->size, store send/recv matrix values */ 12417f3e1f30SHong Zhang PetscInt *Jptr, *prmap = p->garray, con, j, Crmax; 12424ede91e3SHong Zhang Mat_SeqAIJ *a_loc, *c_loc, *c_oth; 1243912837bbSHong Zhang PetscTable ta; 1244b92f168fSBarry Smith MatType mtype; 1245e83e5f86SFande Kong const char *prefix; 1246912837bbSHong Zhang 1247912837bbSHong Zhang PetscFunctionBegin; 12489566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 12499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 12509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1251912837bbSHong Zhang 12524222ddf1SHong Zhang /* create symbolic parallel matrix C */ 12539566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 12549566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 1255912837bbSHong Zhang 12564222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 1257912837bbSHong Zhang 12583cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 12599566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 1260912837bbSHong Zhang 1261912837bbSHong Zhang /* (0) compute Rd = Pd^T, Ro = Po^T */ 1262912837bbSHong Zhang /* --------------------------------- */ 1263acd337a6SBarry Smith PetscCall(MatTranspose(p->A, MAT_INITIAL_MATRIX, &ptap->Rd)); 1264acd337a6SBarry Smith PetscCall(MatTranspose(p->B, MAT_INITIAL_MATRIX, &ptap->Ro)); 1265912837bbSHong Zhang 1266669e9c86SHong Zhang /* (1) compute symbolic A_loc */ 1267669e9c86SHong Zhang /* ---------------------------*/ 12689566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &ptap->A_loc)); 1269912837bbSHong Zhang 12704ede91e3SHong Zhang /* (2-1) compute symbolic C_oth = Ro*A_loc */ 1271912837bbSHong Zhang /* ------------------------------------ */ 12729566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 12739566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(ptap->Ro, prefix)); 12749566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(ptap->Ro, "inner_offdiag_")); 12759566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_oth)); 12769566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro, ptap->A_loc, fill, ptap->C_oth)); 1277912837bbSHong Zhang 1278912837bbSHong Zhang /* (3) send coj of C_oth to other processors */ 1279912837bbSHong Zhang /* ------------------------------------------ */ 1280912837bbSHong Zhang /* determine row ownership */ 12819566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &rowmap)); 1282912837bbSHong Zhang rowmap->n = pn; 1283912837bbSHong Zhang rowmap->bs = 1; 12849566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(rowmap)); 1285912837bbSHong Zhang owners = rowmap->range; 1286912837bbSHong Zhang 1287912837bbSHong Zhang /* determine the number of messages to send, their lengths */ 12889566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(size, &len_s, size, &len_si, size, &sstatus, size + 2, &owners_co)); 12899566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(len_s, size)); 12909566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(len_si, size)); 1291912837bbSHong Zhang 1292912837bbSHong Zhang c_oth = (Mat_SeqAIJ *)ptap->C_oth->data; 12939371c9d4SSatish Balay coi = c_oth->i; 12949371c9d4SSatish Balay coj = c_oth->j; 1295912837bbSHong Zhang con = ptap->C_oth->rmap->n; 1296912837bbSHong Zhang proc = 0; 1297912837bbSHong Zhang for (i = 0; i < con; i++) { 1298912837bbSHong Zhang while (prmap[i] >= owners[proc + 1]) proc++; 12997f3e1f30SHong Zhang len_si[proc]++; /* num of rows in Co(=Pt*A) to be sent to [proc] */ 1300912837bbSHong Zhang len_s[proc] += coi[i + 1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */ 1301912837bbSHong Zhang } 1302912837bbSHong Zhang 1303912837bbSHong Zhang len = 0; /* max length of buf_si[], see (4) */ 1304912837bbSHong Zhang owners_co[0] = 0; 1305912837bbSHong Zhang nsend = 0; 1306912837bbSHong Zhang for (proc = 0; proc < size; proc++) { 1307912837bbSHong Zhang owners_co[proc + 1] = owners_co[proc] + len_si[proc]; 1308912837bbSHong Zhang if (len_s[proc]) { 1309912837bbSHong Zhang nsend++; 1310912837bbSHong Zhang len_si[proc] = 2 * (len_si[proc] + 1); /* length of buf_si to be sent to [proc] */ 1311912837bbSHong Zhang len += len_si[proc]; 1312912837bbSHong Zhang } 1313912837bbSHong Zhang } 1314912837bbSHong Zhang 1315912837bbSHong Zhang /* determine the number and length of messages to receive for coi and coj */ 13169566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &nrecv)); 13179566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, nsend, nrecv, len_s, len_si, &id_r, &len_r, &len_ri)); 1318912837bbSHong Zhang 1319912837bbSHong Zhang /* post the Irecv and Isend of coj */ 13209566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 13219566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, nrecv, id_r, len_r, &buf_rj, &rwaits)); 13229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend + 1, &swaits)); 1323912837bbSHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1324912837bbSHong Zhang if (!len_s[proc]) continue; 1325912837bbSHong Zhang i = owners_co[proc]; 13269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k)); 1327912837bbSHong Zhang k++; 1328912837bbSHong Zhang } 1329912837bbSHong Zhang 13307f3e1f30SHong Zhang /* (2-2) compute symbolic C_loc = Rd*A_loc */ 1331912837bbSHong Zhang /* ---------------------------------------- */ 13329566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(ptap->Rd, prefix)); 13339566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(ptap->Rd, "inner_diag_")); 13349566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_loc)); 13359566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd, ptap->A_loc, fill, ptap->C_loc)); 1336912837bbSHong Zhang c_loc = (Mat_SeqAIJ *)ptap->C_loc->data; 1337912837bbSHong Zhang 1338912837bbSHong Zhang /* receives coj are complete */ 1339*48a46eb9SPierre Jolivet for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus)); 13409566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 13419566063dSJacob Faibussowitsch if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus)); 1342912837bbSHong Zhang 1343912837bbSHong Zhang /* add received column indices into ta to update Crmax */ 13444ede91e3SHong Zhang a_loc = (Mat_SeqAIJ *)(ptap->A_loc)->data; 1345669e9c86SHong Zhang 1346669e9c86SHong Zhang /* create and initialize a linked list */ 13479566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(an, aN, &ta)); /* for compute Crmax */ 13484ede91e3SHong Zhang MatRowMergeMax_SeqAIJ(a_loc, ptap->A_loc->rmap->N, ta); 1349669e9c86SHong Zhang 1350912837bbSHong Zhang for (k = 0; k < nrecv; k++) { /* k-th received message */ 1351912837bbSHong Zhang Jptr = buf_rj[k]; 1352*48a46eb9SPierre Jolivet for (j = 0; j < len_r[k]; j++) PetscCall(PetscTableAdd(ta, *(Jptr + j) + 1, 1, INSERT_VALUES)); 1353912837bbSHong Zhang } 13549566063dSJacob Faibussowitsch PetscCall(PetscTableGetCount(ta, &Crmax)); 13559566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&ta)); 1356912837bbSHong Zhang 1357912837bbSHong Zhang /* (4) send and recv coi */ 1358912837bbSHong Zhang /*-----------------------*/ 13599566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 13609566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, nrecv, id_r, len_ri, &buf_ri, &rwaits)); 13619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 1362912837bbSHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 1363912837bbSHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1364912837bbSHong Zhang if (!len_s[proc]) continue; 1365912837bbSHong Zhang /* form outgoing message for i-structure: 1366912837bbSHong Zhang buf_si[0]: nrows to be sent 1367912837bbSHong Zhang [1:nrows]: row index (global) 1368912837bbSHong Zhang [nrows+1:2*nrows+1]: i-structure index 1369912837bbSHong Zhang */ 1370912837bbSHong Zhang /*-------------------------------------------*/ 1371912837bbSHong Zhang nrows = len_si[proc] / 2 - 1; /* num of rows in Co to be sent to [proc] */ 1372912837bbSHong Zhang buf_si_i = buf_si + nrows + 1; 1373912837bbSHong Zhang buf_si[0] = nrows; 1374912837bbSHong Zhang buf_si_i[0] = 0; 1375912837bbSHong Zhang nrows = 0; 1376912837bbSHong Zhang for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) { 1377912837bbSHong Zhang nzi = coi[i + 1] - coi[i]; 1378912837bbSHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi; /* i-structure */ 1379912837bbSHong Zhang buf_si[nrows + 1] = prmap[i] - owners[proc]; /* local row index */ 1380912837bbSHong Zhang nrows++; 1381912837bbSHong Zhang } 13829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k)); 1383912837bbSHong Zhang k++; 1384912837bbSHong Zhang buf_si += len_si[proc]; 1385912837bbSHong Zhang } 1386*48a46eb9SPierre Jolivet for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus)); 13879566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 13889566063dSJacob Faibussowitsch if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus)); 1389912837bbSHong Zhang 13909566063dSJacob Faibussowitsch PetscCall(PetscFree4(len_s, len_si, sstatus, owners_co)); 13919566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 13929566063dSJacob Faibussowitsch PetscCall(PetscFree(swaits)); 13939566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 1394912837bbSHong Zhang 13954222ddf1SHong Zhang /* (5) compute the local portion of C */ 1396912837bbSHong Zhang /* ------------------------------------------ */ 13974222ddf1SHong Zhang /* set initial free space to be Crmax, sufficient for holding nozeros in each row of C */ 13989566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(Crmax, &free_space)); 1399912837bbSHong Zhang current_space = free_space; 1400912837bbSHong Zhang 14019566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nrecv, &buf_ri_k, nrecv, &nextrow, nrecv, &nextci)); 1402912837bbSHong Zhang for (k = 0; k < nrecv; k++) { 1403912837bbSHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1404912837bbSHong Zhang nrows = *buf_ri_k[k]; 1405912837bbSHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 1406a5b23f4aSJose E. Roman nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 1407912837bbSHong Zhang } 1408912837bbSHong Zhang 1409d0609cedSBarry Smith MatPreallocateBegin(comm, pn, an, dnz, onz); 14109566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(Crmax, aN, &lnk, &lnkbt)); 14118c78258cSHong Zhang for (i = 0; i < pn; i++) { /* for each local row of C */ 14124222ddf1SHong Zhang /* add C_loc into C */ 1413912837bbSHong Zhang nzi = c_loc->i[i + 1] - c_loc->i[i]; 1414912837bbSHong Zhang Jptr = c_loc->j + c_loc->i[i]; 14159566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt)); 1416912837bbSHong Zhang 1417912837bbSHong Zhang /* add received col data into lnk */ 1418912837bbSHong Zhang for (k = 0; k < nrecv; k++) { /* k-th received message */ 1419912837bbSHong Zhang if (i == *nextrow[k]) { /* i-th row */ 1420912837bbSHong Zhang nzi = *(nextci[k] + 1) - *nextci[k]; 1421912837bbSHong Zhang Jptr = buf_rj[k] + *nextci[k]; 14229566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt)); 14239371c9d4SSatish Balay nextrow[k]++; 14249371c9d4SSatish Balay nextci[k]++; 1425912837bbSHong Zhang } 1426912837bbSHong Zhang } 14278c78258cSHong Zhang 14288c78258cSHong Zhang /* add missing diagonal entry */ 14298c78258cSHong Zhang if (C->force_diagonals) { 14308c78258cSHong Zhang k = i + owners[rank]; /* column index */ 14319566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1, &k, lnk, lnkbt)); 14328c78258cSHong Zhang } 14338c78258cSHong Zhang 1434912837bbSHong Zhang nzi = lnk[0]; 1435912837bbSHong Zhang 1436912837bbSHong Zhang /* copy data into free space, then initialize lnk */ 14379566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(aN, nzi, current_space->array, lnk, lnkbt)); 14389566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], nzi, current_space->array, dnz, onz)); 1439912837bbSHong Zhang } 14409566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 14419566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 14429566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceDestroy(free_space)); 1443912837bbSHong Zhang 1444912837bbSHong Zhang /* local sizes and preallocation */ 14459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, pn, an, PETSC_DETERMINE, PETSC_DETERMINE)); 14469566063dSJacob Faibussowitsch if (P->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->rmap, P->cmap->bs)); 14479566063dSJacob Faibussowitsch if (A->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->cmap, A->cmap->bs)); 14489566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 1449d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 1450912837bbSHong Zhang 145169be949aSStefano Zampini /* add C_loc and C_oth to C */ 14529566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(C, &rstart, NULL)); 145369be949aSStefano Zampini for (i = 0; i < pn; i++) { 14548c78258cSHong Zhang ncols = c_loc->i[i + 1] - c_loc->i[i]; 14558c78258cSHong Zhang cols = c_loc->j + c_loc->i[i]; 14568c78258cSHong Zhang row = rstart + i; 14579566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES)); 14588c78258cSHong Zhang 1459*48a46eb9SPierre Jolivet if (C->force_diagonals) PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, 1, (const PetscInt *)&row, NULL, INSERT_VALUES)); 146069be949aSStefano Zampini } 146169be949aSStefano Zampini for (i = 0; i < con; i++) { 14628c78258cSHong Zhang ncols = c_oth->i[i + 1] - c_oth->i[i]; 14638c78258cSHong Zhang cols = c_oth->j + c_oth->i[i]; 14648c78258cSHong Zhang row = prmap[i]; 14659566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES)); 146669be949aSStefano Zampini } 14679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 14689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 14699566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 147069be949aSStefano Zampini 1471912837bbSHong Zhang /* members in merge */ 14729566063dSJacob Faibussowitsch PetscCall(PetscFree(id_r)); 14739566063dSJacob Faibussowitsch PetscCall(PetscFree(len_r)); 14749566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_ri[0])); 14759566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_ri)); 14769566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_rj[0])); 14779566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_rj)); 14789566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&rowmap)); 1479912837bbSHong Zhang 14804222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 14816718818eSStefano Zampini C->product->data = ptap; 14826718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_PtAP; 1483912837bbSHong Zhang PetscFunctionReturn(0); 1484912837bbSHong Zhang } 1485912837bbSHong Zhang 14869371c9d4SSatish Balay PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, Mat C) { 14876718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1488669e9c86SHong Zhang Mat_SeqAIJ *c_seq; 14896718818eSStefano Zampini Mat_APMPI *ptap; 1490669e9c86SHong Zhang Mat A_loc, C_loc, C_oth; 1491912837bbSHong Zhang PetscInt i, rstart, rend, cm, ncols, row; 1492912837bbSHong Zhang const PetscInt *cols; 1493912837bbSHong Zhang const PetscScalar *vals; 1494912837bbSHong Zhang 1495912837bbSHong Zhang PetscFunctionBegin; 14966718818eSStefano Zampini MatCheckProduct(C, 3); 14976718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 149828b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 149928b400f6SJacob Faibussowitsch PetscCheck(ptap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 15009566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(C)); 1501912837bbSHong Zhang 1502669e9c86SHong Zhang /* These matrices are obtained in MatTransposeMatMultSymbolic() */ 1503669e9c86SHong Zhang /* 1) get R = Pd^T, Ro = Po^T */ 1504669e9c86SHong Zhang /*----------------------------*/ 15051cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(p->A, ptap->Rd)); 1506acd337a6SBarry Smith PetscCall(MatTranspose(p->A, MAT_REUSE_MATRIX, &ptap->Rd)); 15071cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(p->B, ptap->Ro)); 1508acd337a6SBarry Smith PetscCall(MatTranspose(p->B, MAT_REUSE_MATRIX, &ptap->Ro)); 1509669e9c86SHong Zhang 1510669e9c86SHong Zhang /* 2) compute numeric A_loc */ 1511669e9c86SHong Zhang /*--------------------------*/ 15129566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &ptap->A_loc)); 1513912837bbSHong Zhang 1514669e9c86SHong Zhang /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */ 15154ede91e3SHong Zhang A_loc = ptap->A_loc; 15169566063dSJacob Faibussowitsch PetscCall(((ptap->C_loc)->ops->matmultnumeric)(ptap->Rd, A_loc, ptap->C_loc)); 15179566063dSJacob Faibussowitsch PetscCall(((ptap->C_oth)->ops->matmultnumeric)(ptap->Ro, A_loc, ptap->C_oth)); 1518912837bbSHong Zhang C_loc = ptap->C_loc; 1519912837bbSHong Zhang C_oth = ptap->C_oth; 1520912837bbSHong Zhang 152169be949aSStefano Zampini /* add C_loc and C_oth to C */ 15229566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(C, &rstart, &rend)); 1523912837bbSHong Zhang 1524912837bbSHong Zhang /* C_loc -> C */ 1525912837bbSHong Zhang cm = C_loc->rmap->N; 1526912837bbSHong Zhang c_seq = (Mat_SeqAIJ *)C_loc->data; 1527912837bbSHong Zhang cols = c_seq->j; 1528912837bbSHong Zhang vals = c_seq->a; 1529912837bbSHong Zhang for (i = 0; i < cm; i++) { 1530912837bbSHong Zhang ncols = c_seq->i[i + 1] - c_seq->i[i]; 1531912837bbSHong Zhang row = rstart + i; 15329566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES)); 15339371c9d4SSatish Balay cols += ncols; 15349371c9d4SSatish Balay vals += ncols; 1535912837bbSHong Zhang } 1536912837bbSHong Zhang 1537912837bbSHong Zhang /* Co -> C, off-processor part */ 1538912837bbSHong Zhang cm = C_oth->rmap->N; 1539912837bbSHong Zhang c_seq = (Mat_SeqAIJ *)C_oth->data; 1540912837bbSHong Zhang cols = c_seq->j; 1541912837bbSHong Zhang vals = c_seq->a; 1542912837bbSHong Zhang for (i = 0; i < cm; i++) { 1543912837bbSHong Zhang ncols = c_seq->i[i + 1] - c_seq->i[i]; 1544912837bbSHong Zhang row = p->garray[i]; 15459566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES)); 15469371c9d4SSatish Balay cols += ncols; 15479371c9d4SSatish Balay vals += ncols; 1548912837bbSHong Zhang } 15499566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 15509566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 15519566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 1552912837bbSHong Zhang PetscFunctionReturn(0); 1553912837bbSHong Zhang } 1554912837bbSHong Zhang 15559371c9d4SSatish Balay PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P, Mat A, Mat C) { 1556d6ab1dc0SHong Zhang Mat_Merge_SeqsToMPI *merge; 15576718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1558d6ab1dc0SHong Zhang Mat_SeqAIJ *pd = (Mat_SeqAIJ *)(p->A)->data, *po = (Mat_SeqAIJ *)(p->B)->data; 15591cdffd5eSHong Zhang Mat_APMPI *ap; 1560e745005bSHong Zhang PetscInt *adj; 1561e745005bSHong Zhang PetscInt i, j, k, anz, pnz, row, *cj, nexta; 1562e745005bSHong Zhang MatScalar *ada, *ca, valtmp; 1563d6ab1dc0SHong Zhang PetscInt am = A->rmap->n, cm = C->rmap->n, pon = (p->B)->cmap->n; 1564ce94432eSBarry Smith MPI_Comm comm; 1565d6ab1dc0SHong Zhang PetscMPIInt size, rank, taga, *len_s; 1566d6ab1dc0SHong Zhang PetscInt *owners, proc, nrows, **buf_ri_k, **nextrow, **nextci; 1567d6ab1dc0SHong Zhang PetscInt **buf_ri, **buf_rj; 1568d6ab1dc0SHong Zhang PetscInt cnz = 0, *bj_i, *bi, *bj, bnz, nextcj; /* bi,bj,ba: local array of C(mpi mat) */ 1569d6ab1dc0SHong Zhang MPI_Request *s_waits, *r_waits; 1570d6ab1dc0SHong Zhang MPI_Status *status; 1571d6ab1dc0SHong Zhang MatScalar **abuf_r, *ba_i, *pA, *coa, *ba; 1572ce496241SStefano Zampini const PetscScalar *dummy; 15734e201bd7SHong Zhang PetscInt *ai, *aj, *coi, *coj, *poJ, *pdJ; 1574d6ab1dc0SHong Zhang Mat A_loc; 1575d6ab1dc0SHong Zhang Mat_SeqAIJ *a_loc; 1576d6ab1dc0SHong Zhang 1577d6ab1dc0SHong Zhang PetscFunctionBegin; 15786718818eSStefano Zampini MatCheckProduct(C, 3); 15791cdffd5eSHong Zhang ap = (Mat_APMPI *)C->product->data; 15801cdffd5eSHong Zhang PetscCheck(ap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be computed. Missing data"); 15811cdffd5eSHong Zhang PetscCheck(ap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 15829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 15839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 15849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1585d6ab1dc0SHong Zhang 15861cdffd5eSHong Zhang merge = ap->merge; 1587d6ab1dc0SHong Zhang 1588e745005bSHong Zhang /* 2) compute numeric C_seq = P_loc^T*A_loc */ 1589e745005bSHong Zhang /*------------------------------------------*/ 1590d6ab1dc0SHong Zhang /* get data from symbolic products */ 15919371c9d4SSatish Balay coi = merge->coi; 15929371c9d4SSatish Balay coj = merge->coj; 15939566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(coi[pon] + 1, &coa)); 15949371c9d4SSatish Balay bi = merge->bi; 15959371c9d4SSatish Balay bj = merge->bj; 1596d6ab1dc0SHong Zhang owners = merge->rowmap->range; 15979566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bi[cm] + 1, &ba)); 1598d6ab1dc0SHong Zhang 1599d6ab1dc0SHong Zhang /* get A_loc by taking all local rows of A */ 16001cdffd5eSHong Zhang A_loc = ap->A_loc; 16019566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &A_loc)); 1602d6ab1dc0SHong Zhang a_loc = (Mat_SeqAIJ *)(A_loc)->data; 1603d6ab1dc0SHong Zhang ai = a_loc->i; 1604d6ab1dc0SHong Zhang aj = a_loc->j; 1605d6ab1dc0SHong Zhang 1606ce496241SStefano Zampini /* trigger copy to CPU */ 16079566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &dummy)); 16089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &dummy)); 16099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &dummy)); 16109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &dummy)); 1611d6ab1dc0SHong Zhang for (i = 0; i < am; i++) { 1612d6ab1dc0SHong Zhang anz = ai[i + 1] - ai[i]; 1613d6ab1dc0SHong Zhang adj = aj + ai[i]; 1614d6ab1dc0SHong Zhang ada = a_loc->a + ai[i]; 1615d6ab1dc0SHong Zhang 1616d6ab1dc0SHong Zhang /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */ 1617e745005bSHong Zhang /*-------------------------------------------------------------*/ 1618d6ab1dc0SHong Zhang /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */ 1619d6ab1dc0SHong Zhang pnz = po->i[i + 1] - po->i[i]; 1620d6ab1dc0SHong Zhang poJ = po->j + po->i[i]; 1621d6ab1dc0SHong Zhang pA = po->a + po->i[i]; 1622d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1623d6ab1dc0SHong Zhang row = poJ[j]; 1624d6ab1dc0SHong Zhang cj = coj + coi[row]; 1625d6ab1dc0SHong Zhang ca = coa + coi[row]; 1626e745005bSHong Zhang /* perform sparse axpy */ 1627e745005bSHong Zhang nexta = 0; 1628d6ab1dc0SHong Zhang valtmp = pA[j]; 1629e745005bSHong Zhang for (k = 0; nexta < anz; k++) { 1630e745005bSHong Zhang if (cj[k] == adj[nexta]) { 1631e745005bSHong Zhang ca[k] += valtmp * ada[nexta]; 1632e745005bSHong Zhang nexta++; 1633d6ab1dc0SHong Zhang } 1634e745005bSHong Zhang } 16359566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * anz)); 1636d6ab1dc0SHong Zhang } 1637d6ab1dc0SHong Zhang 1638d6ab1dc0SHong Zhang /* put the value into Cd (diagonal part) */ 1639d6ab1dc0SHong Zhang pnz = pd->i[i + 1] - pd->i[i]; 1640d6ab1dc0SHong Zhang pdJ = pd->j + pd->i[i]; 1641d6ab1dc0SHong Zhang pA = pd->a + pd->i[i]; 1642d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1643d6ab1dc0SHong Zhang row = pdJ[j]; 1644d6ab1dc0SHong Zhang cj = bj + bi[row]; 1645d6ab1dc0SHong Zhang ca = ba + bi[row]; 1646e745005bSHong Zhang /* perform sparse axpy */ 1647e745005bSHong Zhang nexta = 0; 1648d6ab1dc0SHong Zhang valtmp = pA[j]; 1649e745005bSHong Zhang for (k = 0; nexta < anz; k++) { 1650e745005bSHong Zhang if (cj[k] == adj[nexta]) { 1651e745005bSHong Zhang ca[k] += valtmp * ada[nexta]; 1652e745005bSHong Zhang nexta++; 1653d6ab1dc0SHong Zhang } 1654e745005bSHong Zhang } 16559566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * anz)); 1656d6ab1dc0SHong Zhang } 1657d6ab1dc0SHong Zhang } 1658d6ab1dc0SHong Zhang 1659d6ab1dc0SHong Zhang /* 3) send and recv matrix values coa */ 1660d6ab1dc0SHong Zhang /*------------------------------------*/ 1661d6ab1dc0SHong Zhang buf_ri = merge->buf_ri; 1662d6ab1dc0SHong Zhang buf_rj = merge->buf_rj; 1663d6ab1dc0SHong Zhang len_s = merge->len_s; 16649566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &taga)); 16659566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 1666d6ab1dc0SHong Zhang 16679566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend + 1, &s_waits, size, &status)); 1668d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1669d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1670d6ab1dc0SHong Zhang i = merge->owners_co[proc]; 16719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(coa + coi[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 1672d6ab1dc0SHong Zhang k++; 1673d6ab1dc0SHong Zhang } 16749566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 16759566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 1676d6ab1dc0SHong Zhang 16779566063dSJacob Faibussowitsch PetscCall(PetscFree2(s_waits, status)); 16789566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 16799566063dSJacob Faibussowitsch PetscCall(PetscFree(coa)); 1680d6ab1dc0SHong Zhang 1681d6ab1dc0SHong Zhang /* 4) insert local Cseq and received values into Cmpi */ 1682d6ab1dc0SHong Zhang /*----------------------------------------------------*/ 16839566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci)); 1684d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { 1685e745005bSHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1686d6ab1dc0SHong Zhang nrows = *(buf_ri_k[k]); 1687d6ab1dc0SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 1688a5b23f4aSJose E. Roman nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 1689d6ab1dc0SHong Zhang } 1690d6ab1dc0SHong Zhang 1691d6ab1dc0SHong Zhang for (i = 0; i < cm; i++) { 1692d6ab1dc0SHong Zhang row = owners[rank] + i; /* global row index of C_seq */ 1693d6ab1dc0SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of C */ 1694d6ab1dc0SHong Zhang ba_i = ba + bi[i]; 1695d6ab1dc0SHong Zhang bnz = bi[i + 1] - bi[i]; 1696d6ab1dc0SHong Zhang /* add received vals into ba */ 1697d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 1698d6ab1dc0SHong Zhang /* i-th row */ 1699d6ab1dc0SHong Zhang if (i == *nextrow[k]) { 1700d6ab1dc0SHong Zhang cnz = *(nextci[k] + 1) - *nextci[k]; 1701d6ab1dc0SHong Zhang cj = buf_rj[k] + *(nextci[k]); 1702d6ab1dc0SHong Zhang ca = abuf_r[k] + *(nextci[k]); 1703d6ab1dc0SHong Zhang nextcj = 0; 1704d6ab1dc0SHong Zhang for (j = 0; nextcj < cnz; j++) { 1705d6ab1dc0SHong Zhang if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */ 1706d6ab1dc0SHong Zhang ba_i[j] += ca[nextcj++]; 1707d6ab1dc0SHong Zhang } 1708d6ab1dc0SHong Zhang } 17099371c9d4SSatish Balay nextrow[k]++; 17109371c9d4SSatish Balay nextci[k]++; 17119566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * cnz)); 1712d6ab1dc0SHong Zhang } 1713d6ab1dc0SHong Zhang } 17149566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, bnz, bj_i, ba_i, INSERT_VALUES)); 1715d6ab1dc0SHong Zhang } 17169566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 17179566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 1718d6ab1dc0SHong Zhang 17199566063dSJacob Faibussowitsch PetscCall(PetscFree(ba)); 17209566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 17219566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 17229566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 1723d6ab1dc0SHong Zhang PetscFunctionReturn(0); 1724d6ab1dc0SHong Zhang } 1725d6ab1dc0SHong Zhang 17269371c9d4SSatish Balay PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P, Mat A, PetscReal fill, Mat C) { 1727b419842dSStefano Zampini Mat A_loc; 17281cdffd5eSHong Zhang Mat_APMPI *ap; 17290298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 17306718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data, *a = (Mat_MPIAIJ *)A->data; 1731d6ab1dc0SHong Zhang PetscInt *pdti, *pdtj, *poti, *potj, *ptJ; 1732d6ab1dc0SHong Zhang PetscInt nnz; 1733d6ab1dc0SHong Zhang PetscInt *lnk, *owners_co, *coi, *coj, i, k, pnz, row; 1734d6ab1dc0SHong Zhang PetscInt am = A->rmap->n, pn = P->cmap->n; 1735ce94432eSBarry Smith MPI_Comm comm; 1736d6ab1dc0SHong Zhang PetscMPIInt size, rank, tagi, tagj, *len_si, *len_s, *len_ri; 1737d6ab1dc0SHong Zhang PetscInt **buf_rj, **buf_ri, **buf_ri_k; 1738d6ab1dc0SHong Zhang PetscInt len, proc, *dnz, *onz, *owners; 1739d6ab1dc0SHong Zhang PetscInt nzi, *bi, *bj; 1740d6ab1dc0SHong Zhang PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci; 1741d6ab1dc0SHong Zhang MPI_Request *swaits, *rwaits; 1742d6ab1dc0SHong Zhang MPI_Status *sstatus, rstatus; 1743d6ab1dc0SHong Zhang Mat_Merge_SeqsToMPI *merge; 1744d6ab1dc0SHong Zhang PetscInt *ai, *aj, *Jptr, anz, *prmap = p->garray, pon, nspacedouble = 0, j; 1745d6ab1dc0SHong Zhang PetscReal afill = 1.0, afill_tmp; 17464b38b95cSHong Zhang PetscInt rstart = P->cmap->rstart, rmax, aN = A->cmap->N, Armax; 1747b419842dSStefano Zampini Mat_SeqAIJ *a_loc; 17480acc65b4SHong Zhang PetscTable ta; 1749b92f168fSBarry Smith MatType mtype; 1750d6ab1dc0SHong Zhang 1751d6ab1dc0SHong Zhang PetscFunctionBegin; 17529566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1753d6ab1dc0SHong Zhang /* check if matrix local sizes are compatible */ 17549371c9d4SSatish Balay PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, 17559371c9d4SSatish Balay A->rmap->rend, P->rmap->rstart, P->rmap->rend); 1756d6ab1dc0SHong Zhang 17579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1759d6ab1dc0SHong Zhang 17603cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 17611cdffd5eSHong Zhang PetscCall(PetscNew(&ap)); 1762d6ab1dc0SHong Zhang 1763d6ab1dc0SHong Zhang /* get A_loc by taking all local rows of A */ 17649566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &A_loc)); 17652205254eSKarl Rupp 17661cdffd5eSHong Zhang ap->A_loc = A_loc; 1767d6ab1dc0SHong Zhang a_loc = (Mat_SeqAIJ *)(A_loc)->data; 1768d6ab1dc0SHong Zhang ai = a_loc->i; 1769d6ab1dc0SHong Zhang aj = a_loc->j; 1770d6ab1dc0SHong Zhang 1771d6ab1dc0SHong Zhang /* determine symbolic Co=(p->B)^T*A - send to others */ 1772d6ab1dc0SHong Zhang /*----------------------------------------------------*/ 17739566063dSJacob Faibussowitsch PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj)); 17749566063dSJacob Faibussowitsch PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B, &poti, &potj)); 1775d6ab1dc0SHong Zhang pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors 1776d6ab1dc0SHong Zhang >= (num of nonzero rows of C_seq) - pn */ 17779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pon + 1, &coi)); 1778d6ab1dc0SHong Zhang coi[0] = 0; 1779d6ab1dc0SHong Zhang 1780d6ab1dc0SHong Zhang /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */ 1781f91af8c7SBarry Smith nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(poti[pon], ai[am])); 17829566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(nnz, &free_space)); 1783d6ab1dc0SHong Zhang current_space = free_space; 178419f0e57aSHong Zhang 1785d6ab1dc0SHong Zhang /* create and initialize a linked list */ 17869566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(A->cmap->n + a->B->cmap->N, aN, &ta)); 17874b38b95cSHong Zhang MatRowMergeMax_SeqAIJ(a_loc, am, ta); 17889566063dSJacob Faibussowitsch PetscCall(PetscTableGetCount(ta, &Armax)); 178933ba5e2fSHong Zhang 17909566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk)); 1791d6ab1dc0SHong Zhang 1792d6ab1dc0SHong Zhang for (i = 0; i < pon; i++) { 1793d6ab1dc0SHong Zhang pnz = poti[i + 1] - poti[i]; 1794d6ab1dc0SHong Zhang ptJ = potj + poti[i]; 1795d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1796d6ab1dc0SHong Zhang row = ptJ[j]; /* row of A_loc == col of Pot */ 1797d6ab1dc0SHong Zhang anz = ai[row + 1] - ai[row]; 1798d6ab1dc0SHong Zhang Jptr = aj + ai[row]; 1799d6ab1dc0SHong Zhang /* add non-zero cols of AP into the sorted linked list lnk */ 18009566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk)); 1801d6ab1dc0SHong Zhang } 1802d6ab1dc0SHong Zhang nnz = lnk[0]; 1803d6ab1dc0SHong Zhang 1804d6ab1dc0SHong Zhang /* If free space is not available, double the total space in the list */ 1805d6ab1dc0SHong Zhang if (current_space->local_remaining < nnz) { 18069566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), ¤t_space)); 1807d6ab1dc0SHong Zhang nspacedouble++; 1808d6ab1dc0SHong Zhang } 1809d6ab1dc0SHong Zhang 1810d6ab1dc0SHong Zhang /* Copy data into free space, and zero out denserows */ 18119566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk)); 18122205254eSKarl Rupp 1813d6ab1dc0SHong Zhang current_space->array += nnz; 1814d6ab1dc0SHong Zhang current_space->local_used += nnz; 1815d6ab1dc0SHong Zhang current_space->local_remaining -= nnz; 18162205254eSKarl Rupp 1817d6ab1dc0SHong Zhang coi[i + 1] = coi[i] + nnz; 1818d6ab1dc0SHong Zhang } 1819d6ab1dc0SHong Zhang 18209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(coi[pon] + 1, &coj)); 18219566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, coj)); 18229566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */ 18232205254eSKarl Rupp 1824118727c9SMark F. Adams afill_tmp = (PetscReal)coi[pon] / (poti[pon] + ai[am] + 1); 1825d6ab1dc0SHong Zhang if (afill_tmp > afill) afill = afill_tmp; 1826d6ab1dc0SHong Zhang 1827d6ab1dc0SHong Zhang /* send j-array (coj) of Co to other processors */ 1828d6ab1dc0SHong Zhang /*----------------------------------------------*/ 1829d6ab1dc0SHong Zhang /* determine row ownership */ 18309566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 18319566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 18322205254eSKarl Rupp 1833d6ab1dc0SHong Zhang merge->rowmap->n = pn; 1834d6ab1dc0SHong Zhang merge->rowmap->bs = 1; 18352205254eSKarl Rupp 18369566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 1837d6ab1dc0SHong Zhang owners = merge->rowmap->range; 1838d6ab1dc0SHong Zhang 1839d6ab1dc0SHong Zhang /* determine the number of messages to send, their lengths */ 18409566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &len_si)); 18419566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &merge->len_s)); 18422205254eSKarl Rupp 1843d6ab1dc0SHong Zhang len_s = merge->len_s; 1844d6ab1dc0SHong Zhang merge->nsend = 0; 1845d6ab1dc0SHong Zhang 18469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size + 2, &owners_co)); 1847d6ab1dc0SHong Zhang 1848d6ab1dc0SHong Zhang proc = 0; 1849d6ab1dc0SHong Zhang for (i = 0; i < pon; i++) { 1850d6ab1dc0SHong Zhang while (prmap[i] >= owners[proc + 1]) proc++; 1851d6ab1dc0SHong Zhang len_si[proc]++; /* num of rows in Co to be sent to [proc] */ 1852d6ab1dc0SHong Zhang len_s[proc] += coi[i + 1] - coi[i]; 1853d6ab1dc0SHong Zhang } 1854d6ab1dc0SHong Zhang 1855d6ab1dc0SHong Zhang len = 0; /* max length of buf_si[] */ 1856d6ab1dc0SHong Zhang owners_co[0] = 0; 1857d6ab1dc0SHong Zhang for (proc = 0; proc < size; proc++) { 1858d6ab1dc0SHong Zhang owners_co[proc + 1] = owners_co[proc] + len_si[proc]; 1859d6ab1dc0SHong Zhang if (len_si[proc]) { 1860d6ab1dc0SHong Zhang merge->nsend++; 1861d6ab1dc0SHong Zhang len_si[proc] = 2 * (len_si[proc] + 1); 1862d6ab1dc0SHong Zhang len += len_si[proc]; 1863d6ab1dc0SHong Zhang } 1864d6ab1dc0SHong Zhang } 1865d6ab1dc0SHong Zhang 1866d6ab1dc0SHong Zhang /* determine the number and length of messages to receive for coi and coj */ 18679566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 18689566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 1869d6ab1dc0SHong Zhang 1870d6ab1dc0SHong Zhang /* post the Irecv and Isend of coj */ 18719566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 18729566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rwaits)); 18739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &swaits)); 1874d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1875d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1876d6ab1dc0SHong Zhang i = owners_co[proc]; 18779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k)); 1878d6ab1dc0SHong Zhang k++; 1879d6ab1dc0SHong Zhang } 1880d6ab1dc0SHong Zhang 1881d6ab1dc0SHong Zhang /* receives and sends of coj are complete */ 18829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &sstatus)); 1883d6ab1dc0SHong Zhang for (i = 0; i < merge->nrecv; i++) { 1884ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted; 18859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus)); 1886d6ab1dc0SHong Zhang } 18879566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 18889566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus)); 1889d6ab1dc0SHong Zhang 18900acc65b4SHong Zhang /* add received column indices into table to update Armax */ 1891c4762a1bSJed Brown /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */ 18920acc65b4SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 18930acc65b4SHong Zhang Jptr = buf_rj[k]; 1894*48a46eb9SPierre Jolivet for (j = 0; j < merge->len_r[k]; j++) PetscCall(PetscTableAdd(ta, *(Jptr + j) + 1, 1, INSERT_VALUES)); 18950acc65b4SHong Zhang } 18969566063dSJacob Faibussowitsch PetscCall(PetscTableGetCount(ta, &Armax)); 18970acc65b4SHong Zhang 1898d6ab1dc0SHong Zhang /* send and recv coi */ 1899d6ab1dc0SHong Zhang /*-------------------*/ 19009566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 19019566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &rwaits)); 19029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 1903d6ab1dc0SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 1904d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1905d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1906d6ab1dc0SHong Zhang /* form outgoing message for i-structure: 1907d6ab1dc0SHong Zhang buf_si[0]: nrows to be sent 1908d6ab1dc0SHong Zhang [1:nrows]: row index (global) 1909d6ab1dc0SHong Zhang [nrows+1:2*nrows+1]: i-structure index 1910d6ab1dc0SHong Zhang */ 1911d6ab1dc0SHong Zhang /*-------------------------------------------*/ 1912d6ab1dc0SHong Zhang nrows = len_si[proc] / 2 - 1; 1913d6ab1dc0SHong Zhang buf_si_i = buf_si + nrows + 1; 1914d6ab1dc0SHong Zhang buf_si[0] = nrows; 1915d6ab1dc0SHong Zhang buf_si_i[0] = 0; 1916d6ab1dc0SHong Zhang nrows = 0; 1917d6ab1dc0SHong Zhang for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) { 1918d6ab1dc0SHong Zhang nzi = coi[i + 1] - coi[i]; 1919d6ab1dc0SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi; /* i-structure */ 1920d6ab1dc0SHong Zhang buf_si[nrows + 1] = prmap[i] - owners[proc]; /* local row index */ 1921d6ab1dc0SHong Zhang nrows++; 1922d6ab1dc0SHong Zhang } 19239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k)); 1924d6ab1dc0SHong Zhang k++; 1925d6ab1dc0SHong Zhang buf_si += len_si[proc]; 1926d6ab1dc0SHong Zhang } 1927d6ab1dc0SHong Zhang i = merge->nrecv; 1928d6ab1dc0SHong Zhang while (i--) { 1929ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted; 19309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus)); 1931d6ab1dc0SHong Zhang } 19329566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 19339566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus)); 19349566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 19359566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 19369566063dSJacob Faibussowitsch PetscCall(PetscFree(swaits)); 19379566063dSJacob Faibussowitsch PetscCall(PetscFree(sstatus)); 19389566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 1939d6ab1dc0SHong Zhang 1940d6ab1dc0SHong Zhang /* compute the local portion of C (mpi mat) */ 1941d6ab1dc0SHong Zhang /*------------------------------------------*/ 1942d6ab1dc0SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 19439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pn + 1, &bi)); 1944d6ab1dc0SHong Zhang bi[0] = 0; 1945d6ab1dc0SHong Zhang 1946d6ab1dc0SHong Zhang /* set initial free space to be fill*(nnz(P) + nnz(AP)) */ 1947f91af8c7SBarry Smith nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(pdti[pn], PetscIntSumTruncate(poti[pon], ai[am]))); 19489566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(nnz, &free_space)); 1949d6ab1dc0SHong Zhang current_space = free_space; 1950d6ab1dc0SHong Zhang 19519566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci)); 1952d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { 1953d6ab1dc0SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1954d6ab1dc0SHong Zhang nrows = *buf_ri_k[k]; 1955d6ab1dc0SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 19562d4ee042Sprj- nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure */ 1957d6ab1dc0SHong Zhang } 1958d6ab1dc0SHong Zhang 19599566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk)); 1960d0609cedSBarry Smith MatPreallocateBegin(comm, pn, A->cmap->n, dnz, onz); 1961d6ab1dc0SHong Zhang rmax = 0; 1962d6ab1dc0SHong Zhang for (i = 0; i < pn; i++) { 1963d6ab1dc0SHong Zhang /* add pdt[i,:]*AP into lnk */ 1964d6ab1dc0SHong Zhang pnz = pdti[i + 1] - pdti[i]; 1965d6ab1dc0SHong Zhang ptJ = pdtj + pdti[i]; 1966d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1967d6ab1dc0SHong Zhang row = ptJ[j]; /* row of AP == col of Pt */ 1968d6ab1dc0SHong Zhang anz = ai[row + 1] - ai[row]; 1969d6ab1dc0SHong Zhang Jptr = aj + ai[row]; 1970d6ab1dc0SHong Zhang /* add non-zero cols of AP into the sorted linked list lnk */ 19719566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk)); 1972d6ab1dc0SHong Zhang } 1973d6ab1dc0SHong Zhang 1974d6ab1dc0SHong Zhang /* add received col data into lnk */ 1975d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 1976d6ab1dc0SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 1977d6ab1dc0SHong Zhang nzi = *(nextci[k] + 1) - *nextci[k]; 1978d6ab1dc0SHong Zhang Jptr = buf_rj[k] + *nextci[k]; 19799566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(nzi, Jptr, lnk)); 19809371c9d4SSatish Balay nextrow[k]++; 19819371c9d4SSatish Balay nextci[k]++; 1982d6ab1dc0SHong Zhang } 1983d6ab1dc0SHong Zhang } 19848c78258cSHong Zhang 19858c78258cSHong Zhang /* add missing diagonal entry */ 19868c78258cSHong Zhang if (C->force_diagonals) { 19878c78258cSHong Zhang k = i + owners[rank]; /* column index */ 19889566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1, &k, lnk)); 19898c78258cSHong Zhang } 19908c78258cSHong Zhang 1991d6ab1dc0SHong Zhang nnz = lnk[0]; 1992d6ab1dc0SHong Zhang 1993d6ab1dc0SHong Zhang /* if free space is not available, make more free space */ 1994d6ab1dc0SHong Zhang if (current_space->local_remaining < nnz) { 19959566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), ¤t_space)); 1996d6ab1dc0SHong Zhang nspacedouble++; 1997d6ab1dc0SHong Zhang } 1998d6ab1dc0SHong Zhang /* copy data into free space, then initialize lnk */ 19999566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk)); 20009566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], nnz, current_space->array, dnz, onz)); 20012205254eSKarl Rupp 2002d6ab1dc0SHong Zhang current_space->array += nnz; 2003d6ab1dc0SHong Zhang current_space->local_used += nnz; 2004d6ab1dc0SHong Zhang current_space->local_remaining -= nnz; 20052205254eSKarl Rupp 2006d6ab1dc0SHong Zhang bi[i + 1] = bi[i] + nnz; 2007d6ab1dc0SHong Zhang if (nnz > rmax) rmax = nnz; 2008d6ab1dc0SHong Zhang } 20099566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 2010d6ab1dc0SHong Zhang 20119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[pn] + 1, &bj)); 20129566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 2013118727c9SMark F. Adams afill_tmp = (PetscReal)bi[pn] / (pdti[pn] + poti[pon] + ai[am] + 1); 2014d6ab1dc0SHong Zhang if (afill_tmp > afill) afill = afill_tmp; 20159566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 20169566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&ta)); 20179566063dSJacob Faibussowitsch PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj)); 20189566063dSJacob Faibussowitsch PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B, &poti, &potj)); 2019d6ab1dc0SHong Zhang 20204222ddf1SHong Zhang /* create symbolic parallel matrix C - why cannot be assembled in Numeric part */ 20214222ddf1SHong Zhang /*-------------------------------------------------------------------------------*/ 20229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, pn, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE)); 20239566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(C, PetscAbs(P->cmap->bs), PetscAbs(A->cmap->bs))); 20249566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 20259566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 20269566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 2027d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 20289566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(C, 1)); 20299566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 2030d6ab1dc0SHong Zhang for (i = 0; i < pn; i++) { 2031d6ab1dc0SHong Zhang row = i + rstart; 2032d6ab1dc0SHong Zhang nnz = bi[i + 1] - bi[i]; 2033d6ab1dc0SHong Zhang Jptr = bj + bi[i]; 20349566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, nnz, Jptr, NULL, INSERT_VALUES)); 2035d6ab1dc0SHong Zhang } 20369566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 20379566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 20389566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 2039d6ab1dc0SHong Zhang merge->bi = bi; 2040d6ab1dc0SHong Zhang merge->bj = bj; 2041d6ab1dc0SHong Zhang merge->coi = coi; 2042d6ab1dc0SHong Zhang merge->coj = coj; 2043d6ab1dc0SHong Zhang merge->buf_ri = buf_ri; 2044d6ab1dc0SHong Zhang merge->buf_rj = buf_rj; 2045d6ab1dc0SHong Zhang merge->owners_co = owners_co; 2046d6ab1dc0SHong Zhang 20474222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 20481cdffd5eSHong Zhang C->product->data = ap; 20496718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_PtAP; 20501cdffd5eSHong Zhang ap->merge = merge; 2051a560ef98SHong Zhang 20524222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ; 2053f96d37fcSHong Zhang 2054f96d37fcSHong Zhang #if defined(PETSC_USE_INFO) 2055f96d37fcSHong Zhang if (bi[pn] != 0) { 20569566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 20579566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n", (double)afill)); 2058f96d37fcSHong Zhang } else { 20599566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 2060f96d37fcSHong Zhang } 2061f96d37fcSHong Zhang #endif 2062f96d37fcSHong Zhang PetscFunctionReturn(0); 2063f96d37fcSHong Zhang } 20644222ddf1SHong Zhang 20654222ddf1SHong Zhang /* ---------------------------------------------------------------- */ 20669371c9d4SSatish Balay static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C) { 20674222ddf1SHong Zhang Mat_Product *product = C->product; 20684222ddf1SHong Zhang Mat A = product->A, B = product->B; 20694222ddf1SHong Zhang PetscReal fill = product->fill; 20704222ddf1SHong Zhang PetscBool flg; 20714222ddf1SHong Zhang 20724222ddf1SHong Zhang PetscFunctionBegin; 20734222ddf1SHong Zhang /* scalable */ 20749566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "scalable", &flg)); 20754222ddf1SHong Zhang if (flg) { 20769566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C)); 20774222ddf1SHong Zhang goto next; 20784222ddf1SHong Zhang } 20794222ddf1SHong Zhang 20804222ddf1SHong Zhang /* nonscalable */ 20819566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "nonscalable", &flg)); 20824222ddf1SHong Zhang if (flg) { 20839566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C)); 20844222ddf1SHong Zhang goto next; 20854222ddf1SHong Zhang } 20864222ddf1SHong Zhang 20874222ddf1SHong Zhang /* matmatmult */ 20889566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "at*b", &flg)); 20894222ddf1SHong Zhang if (flg) { 20904222ddf1SHong Zhang Mat At; 20914222ddf1SHong Zhang Mat_APMPI *ptap; 20924222ddf1SHong Zhang 20939566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 20949566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At, B, fill, C)); 20956718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 20964222ddf1SHong Zhang if (ptap) { 20974222ddf1SHong Zhang ptap->Pt = At; 20986718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_PtAP; 20994222ddf1SHong Zhang } 21004222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult; 21014222ddf1SHong Zhang goto next; 21024222ddf1SHong Zhang } 21034222ddf1SHong Zhang 21044e84afc0SStefano Zampini /* backend general code */ 21059566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "backend", &flg)); 21064e84afc0SStefano Zampini if (flg) { 21079566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic_MPIAIJBACKEND(C)); 21084e84afc0SStefano Zampini PetscFunctionReturn(0); 21094e84afc0SStefano Zampini } 21104e84afc0SStefano Zampini 21114222ddf1SHong Zhang SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type is not supported"); 21124222ddf1SHong Zhang 21134222ddf1SHong Zhang next: 21144222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB; 21154222ddf1SHong Zhang PetscFunctionReturn(0); 21164222ddf1SHong Zhang } 21174222ddf1SHong Zhang 21184222ddf1SHong Zhang /* ---------------------------------------------------------------- */ 21194222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */ 21209371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C) { 21214222ddf1SHong Zhang Mat_Product *product = C->product; 21224222ddf1SHong Zhang Mat A = product->A, B = product->B; 21234222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 21244e84afc0SStefano Zampini const char *algTypes[5] = {"scalable", "nonscalable", "seqmpi", "backend", "hypre"}; 21254e84afc0SStefano Zampini PetscInt nalg = 5; 21264222ddf1SHong Zhang #else 21279371c9d4SSatish Balay const char *algTypes[4] = { 21289371c9d4SSatish Balay "scalable", 21299371c9d4SSatish Balay "nonscalable", 21309371c9d4SSatish Balay "seqmpi", 21319371c9d4SSatish Balay "backend", 21329371c9d4SSatish Balay }; 21334e84afc0SStefano Zampini PetscInt nalg = 4; 21344222ddf1SHong Zhang #endif 21354222ddf1SHong Zhang PetscInt alg = 1; /* set nonscalable algorithm as default */ 21364222ddf1SHong Zhang PetscBool flg; 21374222ddf1SHong Zhang MPI_Comm comm; 21384222ddf1SHong Zhang 21394222ddf1SHong Zhang PetscFunctionBegin; 21409566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 21414222ddf1SHong Zhang 21424222ddf1SHong Zhang /* Set "nonscalable" as default algorithm */ 21439566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 21444222ddf1SHong Zhang if (flg) { 21459566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21464222ddf1SHong Zhang 21474222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 21484222ddf1SHong Zhang if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */ 21494222ddf1SHong Zhang MatInfo Ainfo, Binfo; 21504222ddf1SHong Zhang PetscInt nz_local; 21514222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 21524222ddf1SHong Zhang 21539566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 21549566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo)); 21554222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated); 21564222ddf1SHong Zhang 21574222ddf1SHong Zhang if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 21581c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm)); 21594222ddf1SHong Zhang 21604222ddf1SHong Zhang if (alg_scalable) { 21614222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 21629566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21639566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local))); 21644222ddf1SHong Zhang } 21654222ddf1SHong Zhang } 21664222ddf1SHong Zhang } 21674222ddf1SHong Zhang 21684222ddf1SHong Zhang /* Get runtime option */ 21694222ddf1SHong Zhang if (product->api_user) { 2170d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 21719566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2172d0609cedSBarry Smith PetscOptionsEnd(); 21734222ddf1SHong Zhang } else { 2174d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 21759566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2176d0609cedSBarry Smith PetscOptionsEnd(); 21774222ddf1SHong Zhang } 2178*48a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21794222ddf1SHong Zhang 21804222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ; 21814222ddf1SHong Zhang PetscFunctionReturn(0); 21824222ddf1SHong Zhang } 21834222ddf1SHong Zhang 21849371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C) { 21858a9c020eSBarry Smith PetscFunctionBegin; 21868a9c020eSBarry Smith PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C)); 21878a9c020eSBarry Smith C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ; 21888a9c020eSBarry Smith PetscFunctionReturn(0); 21898a9c020eSBarry Smith } 21908a9c020eSBarry Smith 21914222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */ 21929371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C) { 21934222ddf1SHong Zhang Mat_Product *product = C->product; 21944222ddf1SHong Zhang Mat A = product->A, B = product->B; 21954e84afc0SStefano Zampini const char *algTypes[4] = {"scalable", "nonscalable", "at*b", "backend"}; 21964e84afc0SStefano Zampini PetscInt nalg = 4; 21974222ddf1SHong Zhang PetscInt alg = 1; /* set default algorithm */ 21984222ddf1SHong Zhang PetscBool flg; 21994222ddf1SHong Zhang MPI_Comm comm; 22004222ddf1SHong Zhang 22014222ddf1SHong Zhang PetscFunctionBegin; 22024222ddf1SHong Zhang /* Check matrix local sizes */ 22039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 22049371c9d4SSatish Balay PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22059371c9d4SSatish Balay A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 22064222ddf1SHong Zhang 22074222ddf1SHong Zhang /* Set default algorithm */ 22089566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 2209*48a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 22104222ddf1SHong Zhang 22114222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 22124222ddf1SHong Zhang if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */ 22134222ddf1SHong Zhang MatInfo Ainfo, Binfo; 22144222ddf1SHong Zhang PetscInt nz_local; 22154222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 22164222ddf1SHong Zhang 22179566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 22189566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo)); 22194222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated); 22204222ddf1SHong Zhang 22214222ddf1SHong Zhang if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 22221c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm)); 22234222ddf1SHong Zhang 22244222ddf1SHong Zhang if (alg_scalable) { 22254222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 22269566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 22279566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local))); 22284222ddf1SHong Zhang } 22294222ddf1SHong Zhang } 22304222ddf1SHong Zhang 22314222ddf1SHong Zhang /* Get runtime option */ 22324222ddf1SHong Zhang if (product->api_user) { 2233d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat"); 22349566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2235d0609cedSBarry Smith PetscOptionsEnd(); 22364222ddf1SHong Zhang } else { 2237d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat"); 22389566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2239d0609cedSBarry Smith PetscOptionsEnd(); 22404222ddf1SHong Zhang } 2241*48a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 22424222ddf1SHong Zhang 22434222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ; 22444222ddf1SHong Zhang PetscFunctionReturn(0); 22454222ddf1SHong Zhang } 22464222ddf1SHong Zhang 22479371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C) { 22484222ddf1SHong Zhang Mat_Product *product = C->product; 22494222ddf1SHong Zhang Mat A = product->A, P = product->B; 22504222ddf1SHong Zhang MPI_Comm comm; 22514222ddf1SHong Zhang PetscBool flg; 22524222ddf1SHong Zhang PetscInt alg = 1; /* set default algorithm */ 22534222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE) 22544e84afc0SStefano Zampini const char *algTypes[5] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend"}; 22554222ddf1SHong Zhang PetscInt nalg = 5; 22564e84afc0SStefano Zampini #else 22574e84afc0SStefano Zampini const char *algTypes[6] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend", "hypre"}; 22584e84afc0SStefano Zampini PetscInt nalg = 6; 22594222ddf1SHong Zhang #endif 22604222ddf1SHong Zhang PetscInt pN = P->cmap->N; 22614222ddf1SHong Zhang 22624222ddf1SHong Zhang PetscFunctionBegin; 22634222ddf1SHong Zhang /* Check matrix local sizes */ 22649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 22659371c9d4SSatish Balay PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22669371c9d4SSatish Balay A->rmap->rstart, A->rmap->rend, P->rmap->rstart, P->rmap->rend); 22679371c9d4SSatish Balay PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22689371c9d4SSatish Balay A->cmap->rstart, A->cmap->rend, P->rmap->rstart, P->rmap->rend); 22694222ddf1SHong Zhang 22704222ddf1SHong Zhang /* Set "nonscalable" as default algorithm */ 22719566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 22724222ddf1SHong Zhang if (flg) { 22739566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 22744222ddf1SHong Zhang 22754222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 22764222ddf1SHong Zhang if (pN > 100000) { 22774222ddf1SHong Zhang MatInfo Ainfo, Pinfo; 22784222ddf1SHong Zhang PetscInt nz_local; 22794222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 22804222ddf1SHong Zhang 22819566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 22829566063dSJacob Faibussowitsch PetscCall(MatGetInfo(P, MAT_LOCAL, &Pinfo)); 22834222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated); 22844222ddf1SHong Zhang 22854222ddf1SHong Zhang if (pN > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 22861c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm)); 22874222ddf1SHong Zhang 22884222ddf1SHong Zhang if (alg_scalable) { 22894222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 22909566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 22914222ddf1SHong Zhang } 22924222ddf1SHong Zhang } 22934222ddf1SHong Zhang } 22944222ddf1SHong Zhang 22954222ddf1SHong Zhang /* Get runtime option */ 22964222ddf1SHong Zhang if (product->api_user) { 2297d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 22989566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg)); 2299d0609cedSBarry Smith PetscOptionsEnd(); 23004222ddf1SHong Zhang } else { 2301d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 23029566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg)); 2303d0609cedSBarry Smith PetscOptionsEnd(); 23044222ddf1SHong Zhang } 2305*48a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23064222ddf1SHong Zhang 23074222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ; 23084222ddf1SHong Zhang PetscFunctionReturn(0); 23094222ddf1SHong Zhang } 23104222ddf1SHong Zhang 23119371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C) { 23124222ddf1SHong Zhang Mat_Product *product = C->product; 23134222ddf1SHong Zhang Mat A = product->A, R = product->B; 23144222ddf1SHong Zhang 23154222ddf1SHong Zhang PetscFunctionBegin; 23164222ddf1SHong Zhang /* Check matrix local sizes */ 23179371c9d4SSatish Balay PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->n, 23189371c9d4SSatish Balay A->rmap->n, R->rmap->n, R->cmap->n); 23194222ddf1SHong Zhang 23204222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ; 23214222ddf1SHong Zhang PetscFunctionReturn(0); 23224222ddf1SHong Zhang } 23234222ddf1SHong Zhang 23244222ddf1SHong Zhang /* 23254222ddf1SHong Zhang Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm 23264222ddf1SHong Zhang */ 23279371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C) { 23284222ddf1SHong Zhang Mat_Product *product = C->product; 23294222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 23304222ddf1SHong Zhang PetscInt alg = 1; /* default algorithm */ 23314222ddf1SHong Zhang const char *algTypes[3] = {"scalable", "nonscalable", "seqmpi"}; 23324222ddf1SHong Zhang PetscInt nalg = 3; 23334222ddf1SHong Zhang 23344222ddf1SHong Zhang PetscFunctionBegin; 23354222ddf1SHong Zhang /* Set default algorithm */ 23369566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 2337*48a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23384222ddf1SHong Zhang 23394222ddf1SHong Zhang /* Get runtime option */ 23404222ddf1SHong Zhang if (product->api_user) { 2341d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat"); 23429566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2343d0609cedSBarry Smith PetscOptionsEnd(); 23444222ddf1SHong Zhang } else { 2345d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat"); 23469566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg)); 2347d0609cedSBarry Smith PetscOptionsEnd(); 23484222ddf1SHong Zhang } 2349*48a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23504222ddf1SHong Zhang 23514222ddf1SHong Zhang C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ; 23524222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABC; 23534222ddf1SHong Zhang PetscFunctionReturn(0); 23544222ddf1SHong Zhang } 23554222ddf1SHong Zhang 23569371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C) { 23574222ddf1SHong Zhang Mat_Product *product = C->product; 23584222ddf1SHong Zhang 23594222ddf1SHong Zhang PetscFunctionBegin; 23604222ddf1SHong Zhang switch (product->type) { 23619371c9d4SSatish Balay case MATPRODUCT_AB: PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C)); break; 23629371c9d4SSatish Balay case MATPRODUCT_ABt: PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C)); break; 23639371c9d4SSatish Balay case MATPRODUCT_AtB: PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C)); break; 23649371c9d4SSatish Balay case MATPRODUCT_PtAP: PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C)); break; 23659371c9d4SSatish Balay case MATPRODUCT_RARt: PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C)); break; 23669371c9d4SSatish Balay case MATPRODUCT_ABC: PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C)); break; 23679371c9d4SSatish Balay default: break; 23684222ddf1SHong Zhang } 23694222ddf1SHong Zhang PetscFunctionReturn(0); 23704222ddf1SHong Zhang } 2371