xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision 48a46eb9bd028bec07ec0f396b1a3abb43f14558)
1be1d678aSKris Buschelman 
22499ec78SHong Zhang /*
32499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
42499ec78SHong Zhang           C = A * B
52499ec78SHong Zhang */
6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
8c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
9c6db04a5SJed Brown #include <petscbt.h>
10c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
11af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
1297929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
131634b032SHong Zhang 
145e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
154222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat);
165e5acdf2Sstefano_zampini #endif
175e5acdf2Sstefano_zampini 
189371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C) {
198a9c020eSBarry Smith   Mat_Product *product = C->product;
208a9c020eSBarry Smith   Mat          B       = product->B;
218a9c020eSBarry Smith 
228a9c020eSBarry Smith   PetscFunctionBegin;
238a9c020eSBarry Smith   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &product->B));
248a9c020eSBarry Smith   PetscCall(MatDestroy(&B));
258a9c020eSBarry Smith   PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C));
268a9c020eSBarry Smith   PetscFunctionReturn(0);
278a9c020eSBarry Smith }
288a9c020eSBarry Smith 
299371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C) {
304222ddf1SHong Zhang   Mat_Product        *product = C->product;
314222ddf1SHong Zhang   Mat                 A = product->A, B = product->B;
324222ddf1SHong Zhang   MatProductAlgorithm alg  = product->alg;
334222ddf1SHong Zhang   PetscReal           fill = product->fill;
345e68f438SHong Zhang   PetscBool           flg;
352499ec78SHong Zhang 
362499ec78SHong Zhang   PetscFunctionBegin;
374222ddf1SHong Zhang   /* scalable */
389566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "scalable", &flg));
394222ddf1SHong Zhang   if (flg) {
409566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
416718818eSStefano Zampini     PetscFunctionReturn(0);
420fc8cf34SHong Zhang   }
437d0a89b7SHong Zhang 
444222ddf1SHong Zhang   /* nonscalable */
459566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "nonscalable", &flg));
464222ddf1SHong Zhang   if (flg) {
479566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
486718818eSStefano Zampini     PetscFunctionReturn(0);
494222ddf1SHong Zhang   }
504222ddf1SHong Zhang 
514222ddf1SHong Zhang   /* seqmpi */
529566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "seqmpi", &flg));
534222ddf1SHong Zhang   if (flg) {
549566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A, B, fill, C));
556718818eSStefano Zampini     PetscFunctionReturn(0);
564222ddf1SHong Zhang   }
574222ddf1SHong Zhang 
584e84afc0SStefano Zampini   /* backend general code */
599566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "backend", &flg));
604e84afc0SStefano Zampini   if (flg) {
619566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
624e84afc0SStefano Zampini     PetscFunctionReturn(0);
634e84afc0SStefano Zampini   }
644e84afc0SStefano Zampini 
654222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
669566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "hypre", &flg));
674222ddf1SHong Zhang   if (flg) {
689566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C));
694222ddf1SHong Zhang     PetscFunctionReturn(0);
704222ddf1SHong Zhang   }
714222ddf1SHong Zhang #endif
724222ddf1SHong Zhang   SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Mat Product Algorithm is not supported");
732499ec78SHong Zhang }
742499ec78SHong Zhang 
759371c9d4SSatish Balay PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(void *data) {
766718818eSStefano Zampini   Mat_APMPI *ptap = (Mat_APMPI *)data;
77598bc09dSHong Zhang 
78598bc09dSHong Zhang   PetscFunctionBegin;
799566063dSJacob Faibussowitsch   PetscCall(PetscFree2(ptap->startsj_s, ptap->startsj_r));
809566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->bufa));
819566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_loc));
829566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_oth));
839566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->Pt));
849566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->api));
859566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apj));
869566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apa));
879566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap));
88598bc09dSHong Zhang   PetscFunctionReturn(0);
89598bc09dSHong Zhang }
90598bc09dSHong Zhang 
919371c9d4SSatish Balay PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, Mat C) {
924ae0847bSHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
93598bc09dSHong Zhang   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data;
94598bc09dSHong Zhang   Mat_SeqAIJ        *cd = (Mat_SeqAIJ *)(c->A)->data, *co = (Mat_SeqAIJ *)(c->B)->data;
95c12557a1SHong Zhang   PetscScalar       *cda = cd->a, *coa = co->a;
96598bc09dSHong Zhang   Mat_SeqAIJ        *p_loc, *p_oth;
979ce11a7cSHong Zhang   PetscScalar       *apa, *ca;
98c12557a1SHong Zhang   PetscInt           cm = C->rmap->n;
996718818eSStefano Zampini   Mat_APMPI         *ptap;
100c12557a1SHong Zhang   PetscInt          *api, *apj, *apJ, i, k;
10129825010SHong Zhang   PetscInt           cstart = C->cmap->rstart;
102598bc09dSHong Zhang   PetscInt           cdnz, conz, k0, k1;
103ce496241SStefano Zampini   const PetscScalar *dummy;
1049467f45fSHong Zhang   MPI_Comm           comm;
1059467f45fSHong Zhang   PetscMPIInt        size;
106598bc09dSHong Zhang 
107598bc09dSHong Zhang   PetscFunctionBegin;
1086718818eSStefano Zampini   MatCheckProduct(C, 3);
1096718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
11028b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
1119566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1129566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
113aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
11480da8df7SHong Zhang 
11565e4b4d4SStefano Zampini   /* flag CPU mask for C */
11665e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
11765e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
11865e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
11965e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
12065e4b4d4SStefano Zampini #endif
12165e4b4d4SStefano Zampini 
122a1a4e84aSHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
123598bc09dSHong Zhang   /*-----------------------------------------------------*/
124a1a4e84aSHong Zhang   /* update numerical values of P_oth and P_loc */
1259566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1269566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
127598bc09dSHong Zhang 
128598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
129598bc09dSHong Zhang   /*----------------------------------------------------------*/
130598bc09dSHong Zhang   /* get data from symbolic products */
131a1a4e84aSHong Zhang   p_loc = (Mat_SeqAIJ *)(ptap->P_loc)->data;
132c12557a1SHong Zhang   p_oth = NULL;
1339371c9d4SSatish Balay   if (size > 1) { p_oth = (Mat_SeqAIJ *)(ptap->P_oth)->data; }
134598bc09dSHong Zhang 
135598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
136598bc09dSHong Zhang   apa = ptap->apa;
137598bc09dSHong Zhang 
13829825010SHong Zhang   api = ptap->api;
13929825010SHong Zhang   apj = ptap->apj;
140ce496241SStefano Zampini   /* trigger copy to CPU */
1419566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy));
1429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy));
1439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy));
1449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy));
145598bc09dSHong Zhang   for (i = 0; i < cm; i++) {
146c12557a1SHong Zhang     /* compute apa = A[i,:]*P */
147e497d3c8SHong Zhang     AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa);
148598bc09dSHong Zhang 
149598bc09dSHong Zhang     /* set values in C */
150598bc09dSHong Zhang     apJ  = apj + api[i];
151598bc09dSHong Zhang     cdnz = cd->i[i + 1] - cd->i[i];
152598bc09dSHong Zhang     conz = co->i[i + 1] - co->i[i];
153598bc09dSHong Zhang 
154910cf402Sprj-     /* 1st off-diagonal part of C */
155598bc09dSHong Zhang     ca = coa + co->i[i];
156598bc09dSHong Zhang     k  = 0;
157598bc09dSHong Zhang     for (k0 = 0; k0 < conz; k0++) {
158598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
159598bc09dSHong Zhang       ca[k0]        = apa[apJ[k]];
1605cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
161598bc09dSHong Zhang     }
162598bc09dSHong Zhang 
163598bc09dSHong Zhang     /* diagonal part of C */
164598bc09dSHong Zhang     ca = cda + cd->i[i];
165598bc09dSHong Zhang     for (k1 = 0; k1 < cdnz; k1++) {
166598bc09dSHong Zhang       ca[k1]        = apa[apJ[k]];
1675cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
168598bc09dSHong Zhang     }
169598bc09dSHong Zhang 
170910cf402Sprj-     /* 2nd off-diagonal part of C */
171598bc09dSHong Zhang     ca = coa + co->i[i];
172598bc09dSHong Zhang     for (; k0 < conz; k0++) {
173598bc09dSHong Zhang       ca[k0]        = apa[apJ[k]];
1745cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
175598bc09dSHong Zhang     }
176598bc09dSHong Zhang   }
1779566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
1789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
179598bc09dSHong Zhang   PetscFunctionReturn(0);
180598bc09dSHong Zhang }
181598bc09dSHong Zhang 
1829371c9d4SSatish Balay PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, PetscReal fill, Mat C) {
183ce94432eSBarry Smith   MPI_Comm           comm;
1849467f45fSHong Zhang   PetscMPIInt        size;
1853cdca5ebSHong Zhang   Mat_APMPI         *ptap;
1860298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
1876718818eSStefano Zampini   Mat_MPIAIJ        *a  = (Mat_MPIAIJ *)A->data;
188bfcd1a73SHong Zhang   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data, *p_loc, *p_oth;
1897dbaa2c6Sandi selinger   PetscInt          *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
1904ae0847bSHong Zhang   PetscInt          *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
191d14fa243SHong Zhang   PetscInt          *lnk, i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi;
1925cab4f04SHong Zhang   PetscInt           am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n;
193598bc09dSHong Zhang   PetscBT            lnkbt;
194bfcd1a73SHong Zhang   PetscReal          afill;
195b92f168fSBarry Smith   MatType            mtype;
196598bc09dSHong Zhang 
197598bc09dSHong Zhang   PetscFunctionBegin;
1986718818eSStefano Zampini   MatCheckProduct(C, 4);
19928b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
2009566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
2019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2029467f45fSHong Zhang 
2033cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
2049566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
205598bc09dSHong Zhang 
206598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
2079566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
20819f0e57aSHong Zhang 
209598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
2109566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
211598bc09dSHong Zhang 
212a1a4e84aSHong Zhang   p_loc  = (Mat_SeqAIJ *)(ptap->P_loc)->data;
2139371c9d4SSatish Balay   pi_loc = p_loc->i;
2149371c9d4SSatish Balay   pj_loc = p_loc->j;
2159467f45fSHong Zhang   if (size > 1) {
2169467f45fSHong Zhang     p_oth  = (Mat_SeqAIJ *)(ptap->P_oth)->data;
2179371c9d4SSatish Balay     pi_oth = p_oth->i;
2189371c9d4SSatish Balay     pj_oth = p_oth->j;
21920e3dc75SHong Zhang   } else {
22020e3dc75SHong Zhang     p_oth  = NULL;
2219371c9d4SSatish Balay     pi_oth = NULL;
2229371c9d4SSatish Balay     pj_oth = NULL;
2239467f45fSHong Zhang   }
224598bc09dSHong Zhang 
225598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
226598bc09dSHong Zhang   /*-------------------------------------------------------------------*/
2279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &api));
228a1a4e84aSHong Zhang   ptap->api = api;
229598bc09dSHong Zhang   api[0]    = 0;
230598bc09dSHong Zhang 
2315cab4f04SHong Zhang   /* create and initialize a linked list */
2329566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
233598bc09dSHong Zhang 
234bfcd1a73SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
2359566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
236598bc09dSHong Zhang   current_space = free_space;
237598bc09dSHong Zhang 
238d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
239598bc09dSHong Zhang   for (i = 0; i < am; i++) {
240598bc09dSHong Zhang     /* diagonal portion of A */
241598bc09dSHong Zhang     nzi = adi[i + 1] - adi[i];
242598bc09dSHong Zhang     for (j = 0; j < nzi; j++) {
243598bc09dSHong Zhang       row  = *adj++;
244598bc09dSHong Zhang       pnz  = pi_loc[row + 1] - pi_loc[row];
245598bc09dSHong Zhang       Jptr = pj_loc + pi_loc[row];
246598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
2479566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
248598bc09dSHong Zhang     }
249598bc09dSHong Zhang     /* off-diagonal portion of A */
250598bc09dSHong Zhang     nzi = aoi[i + 1] - aoi[i];
251598bc09dSHong Zhang     for (j = 0; j < nzi; j++) {
252598bc09dSHong Zhang       row  = *aoj++;
253598bc09dSHong Zhang       pnz  = pi_oth[row + 1] - pi_oth[row];
254598bc09dSHong Zhang       Jptr = pj_oth + pi_oth[row];
2559566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
256598bc09dSHong Zhang     }
2578c78258cSHong Zhang     /* add possible missing diagonal entry */
2588c78258cSHong Zhang     if (C->force_diagonals) {
2598c78258cSHong Zhang       j = i + rstart; /* column index */
2609566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1, &j, lnk, lnkbt));
2618c78258cSHong Zhang     }
262598bc09dSHong Zhang 
263d14fa243SHong Zhang     apnz       = lnk[0];
264598bc09dSHong Zhang     api[i + 1] = api[i] + apnz;
265598bc09dSHong Zhang 
266598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
267598bc09dSHong Zhang     if (current_space->local_remaining < apnz) {
2689566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), &current_space));
269598bc09dSHong Zhang       nspacedouble++;
270598bc09dSHong Zhang     }
271598bc09dSHong Zhang 
272598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
2739566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN, apnz, current_space->array, lnk, lnkbt));
2749566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
2752205254eSKarl Rupp 
276598bc09dSHong Zhang     current_space->array += apnz;
277598bc09dSHong Zhang     current_space->local_used += apnz;
278598bc09dSHong Zhang     current_space->local_remaining -= apnz;
279598bc09dSHong Zhang   }
280598bc09dSHong Zhang 
281598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
282598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
2839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(api[am] + 1, &ptap->apj));
284a1a4e84aSHong Zhang   apj = ptap->apj;
2859566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
2869566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
287598bc09dSHong Zhang 
288f84c536bSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
2899566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN, &ptap->apa));
290f84c536bSHong Zhang 
2914222ddf1SHong Zhang   /* set and assemble symbolic parallel matrix C */
2924222ddf1SHong Zhang   /*---------------------------------------------*/
2939566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
2949566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
295a2f3521dSMark F. Adams 
2969566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
2979566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
2989566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
299d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
30017f75172Sandi selinger 
3019566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
3029566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3049566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
305598bc09dSHong Zhang 
3064222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
3074222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
308598bc09dSHong Zhang 
3094222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
3106718818eSStefano Zampini   C->product->data    = ptap;
3116718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
312598bc09dSHong Zhang 
313bfcd1a73SHong Zhang   /* set MatInfo */
314118727c9SMark F. Adams   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
315bfcd1a73SHong Zhang   if (afill < 1.0) afill = 1.0;
3164222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
3174222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
3184222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
319bfcd1a73SHong Zhang 
320bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
321bfcd1a73SHong Zhang   if (api[am]) {
3229566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
3239566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
324bfcd1a73SHong Zhang   } else {
3259566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
326bfcd1a73SHong Zhang   }
327bfcd1a73SHong Zhang #endif
328598bc09dSHong Zhang   PetscFunctionReturn(0);
329598bc09dSHong Zhang }
330598bc09dSHong Zhang 
3314222ddf1SHong Zhang /* ------------------------------------------------------- */
3326718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat);
3336718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat, Mat, Mat);
3346718818eSStefano Zampini 
3359371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C) {
3364222ddf1SHong Zhang   Mat_Product *product = C->product;
3374222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
3389123193aSHong Zhang 
3399123193aSHong Zhang   PetscFunctionBegin;
3404222ddf1SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend)
34198921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
3424222ddf1SHong Zhang 
3434222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense;
3444222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
3459123193aSHong Zhang   PetscFunctionReturn(0);
3469123193aSHong Zhang }
3474222ddf1SHong Zhang /* -------------------------------------------------------------------- */
3489371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C) {
3494222ddf1SHong Zhang   Mat_Product *product = C->product;
3504222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
3514222ddf1SHong Zhang 
3524222ddf1SHong Zhang   PetscFunctionBegin;
3534222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
35498921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
3554222ddf1SHong Zhang 
3564222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense;
3574222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
3584222ddf1SHong Zhang   PetscFunctionReturn(0);
3594222ddf1SHong Zhang }
3604222ddf1SHong Zhang 
3614222ddf1SHong Zhang /* --------------------------------------------------------------------- */
3629371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C) {
3634222ddf1SHong Zhang   Mat_Product *product = C->product;
3644222ddf1SHong Zhang 
3654222ddf1SHong Zhang   PetscFunctionBegin;
3664222ddf1SHong Zhang   switch (product->type) {
3679371c9d4SSatish Balay   case MATPRODUCT_AB: PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C)); break;
3689371c9d4SSatish Balay   case MATPRODUCT_AtB: PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C)); break;
3699371c9d4SSatish Balay   default: break;
3704222ddf1SHong Zhang   }
3714222ddf1SHong Zhang   PetscFunctionReturn(0);
3724222ddf1SHong Zhang }
3734222ddf1SHong Zhang /* ------------------------------------------------------- */
3749123193aSHong Zhang 
3754324174eSBarry Smith typedef struct {
3765ea7661aSPierre Jolivet   Mat           workB, workB1;
3774324174eSBarry Smith   MPI_Request  *rwaits, *swaits;
37887753ddeSHong Zhang   PetscInt      nsends, nrecvs;
37987753ddeSHong Zhang   MPI_Datatype *stype, *rtype;
3806718818eSStefano Zampini   PetscInt      blda;
3814324174eSBarry Smith } MPIAIJ_MPIDense;
3824324174eSBarry Smith 
3839371c9d4SSatish Balay PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void *ctx) {
3844324174eSBarry Smith   MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense *)ctx;
38587753ddeSHong Zhang   PetscInt         i;
3864324174eSBarry Smith 
3874324174eSBarry Smith   PetscFunctionBegin;
3889566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB));
3899566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB1));
390*48a46eb9SPierre Jolivet   for (i = 0; i < contents->nsends; i++) PetscCallMPI(MPI_Type_free(&contents->stype[i]));
391*48a46eb9SPierre Jolivet   for (i = 0; i < contents->nrecvs; i++) PetscCallMPI(MPI_Type_free(&contents->rtype[i]));
3929566063dSJacob Faibussowitsch   PetscCall(PetscFree4(contents->stype, contents->rtype, contents->rwaits, contents->swaits));
3939566063dSJacob Faibussowitsch   PetscCall(PetscFree(contents));
3944324174eSBarry Smith   PetscFunctionReturn(0);
3954324174eSBarry Smith }
3964324174eSBarry Smith 
3979371c9d4SSatish Balay static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) {
398f32d5d43SBarry Smith   Mat_MPIAIJ      *aij = (Mat_MPIAIJ *)A->data;
399b45e3bf4SStefano Zampini   PetscInt         nz  = aij->B->cmap->n, nsends, nrecvs, i, nrows_to, j, blda, m, M, n, N;
4004324174eSBarry Smith   MPIAIJ_MPIDense *contents;
4014324174eSBarry Smith   VecScatter       ctx = aij->Mvctx;
4025ea7661aSPierre Jolivet   PetscInt         Am = A->rmap->n, Bm = B->rmap->n, BN = B->cmap->N, Bbn, Bbn1, bs, nrows_from, numBb;
40387753ddeSHong Zhang   MPI_Comm         comm;
40487753ddeSHong Zhang   MPI_Datatype     type1, *stype, *rtype;
40587753ddeSHong Zhang   const PetscInt  *sindices, *sstarts, *rstarts;
40687753ddeSHong Zhang   PetscMPIInt     *disp;
4076718818eSStefano Zampini   PetscBool        cisdense;
4089123193aSHong Zhang 
4099123193aSHong Zhang   PetscFunctionBegin;
4106718818eSStefano Zampini   MatCheckProduct(C, 4);
41128b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
4129566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
4139566063dSJacob Faibussowitsch   PetscCall(PetscObjectBaseTypeCompare((PetscObject)C, MATMPIDENSE, &cisdense));
414*48a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)B)->type_name));
4159566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(C, &m, &n));
4169566063dSJacob Faibussowitsch   PetscCall(MatGetSize(C, &M, &N));
417*48a46eb9SPierre Jolivet   if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) PetscCall(MatSetSizes(C, Am, B->cmap->n, A->rmap->N, BN));
4189566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
4199566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
4209566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &blda));
4219566063dSJacob Faibussowitsch   PetscCall(PetscNew(&contents));
4224324174eSBarry Smith 
4239566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
4249566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
42587753ddeSHong Zhang 
42687753ddeSHong Zhang   /* Create column block of B and C for memory scalability when BN is too large */
42787753ddeSHong Zhang   /* Estimate Bbn, column size of Bb */
42887753ddeSHong Zhang   if (nz) {
42987753ddeSHong Zhang     Bbn1 = 2 * Am * BN / nz;
430da7cbbe7SHong Zhang     if (!Bbn1) Bbn1 = 1;
43187753ddeSHong Zhang   } else Bbn1 = BN;
43287753ddeSHong Zhang 
43387753ddeSHong Zhang   bs   = PetscAbs(B->cmap->bs);
43487753ddeSHong Zhang   Bbn1 = Bbn1 / bs * bs; /* Bbn1 is a multiple of bs */
43587753ddeSHong Zhang   if (Bbn1 > BN) Bbn1 = BN;
4369566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(&Bbn1, &Bbn, 1, MPIU_INT, MPI_MAX, comm));
43787753ddeSHong Zhang 
43887753ddeSHong Zhang   /* Enable runtime option for Bbn */
439d0609cedSBarry Smith   PetscOptionsBegin(comm, ((PetscObject)C)->prefix, "MatMatMult", "Mat");
4409566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-matmatmult_Bbn", "Number of columns in Bb", "MatMatMult", Bbn, &Bbn, NULL));
441d0609cedSBarry Smith   PetscOptionsEnd();
4426718818eSStefano Zampini   Bbn = PetscMin(Bbn, BN);
44387753ddeSHong Zhang 
4446718818eSStefano Zampini   if (Bbn > 0 && Bbn < BN) {
4455ea7661aSPierre Jolivet     numBb = BN / Bbn;
4465ea7661aSPierre Jolivet     Bbn1  = BN - numBb * Bbn;
4475ea7661aSPierre Jolivet   } else numBb = 0;
44887753ddeSHong Zhang 
4495ea7661aSPierre Jolivet   if (numBb) {
4509566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n", BN, Bbn, numBb));
4515ea7661aSPierre Jolivet     if (Bbn1) { /* Create workB1 for the remaining columns */
4529566063dSJacob Faibussowitsch       PetscCall(PetscInfo(C, "use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n", BN, Bbn1));
45387753ddeSHong Zhang       /* Create work matrix used to store off processor rows of B needed for local product */
4549566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn1, NULL, &contents->workB1));
4555ea7661aSPierre Jolivet     } else contents->workB1 = NULL;
45687753ddeSHong Zhang   }
45787753ddeSHong Zhang 
45887753ddeSHong Zhang   /* Create work matrix used to store off processor rows of B needed for local product */
4599566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn, NULL, &contents->workB));
46087753ddeSHong Zhang 
46187753ddeSHong Zhang   /* Use MPI derived data type to reduce memory required by the send/recv buffers */
4629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(nsends, &stype, nrecvs, &rtype, nrecvs, &contents->rwaits, nsends, &contents->swaits));
46387753ddeSHong Zhang   contents->stype  = stype;
46487753ddeSHong Zhang   contents->nsends = nsends;
46587753ddeSHong Zhang 
46687753ddeSHong Zhang   contents->rtype  = rtype;
46787753ddeSHong Zhang   contents->nrecvs = nrecvs;
4686718818eSStefano Zampini   contents->blda   = blda;
46987753ddeSHong Zhang 
4709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bm + 1, &disp));
47187753ddeSHong Zhang   for (i = 0; i < nsends; i++) {
47287753ddeSHong Zhang     nrows_to = sstarts[i + 1] - sstarts[i];
473b45e3bf4SStefano Zampini     for (j = 0; j < nrows_to; j++) disp[j] = sindices[sstarts[i] + j]; /* rowB to be sent */
4749566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(nrows_to, 1, disp, MPIU_SCALAR, &type1));
4759566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1, 0, blda * sizeof(PetscScalar), &stype[i]));
4769566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&stype[i]));
4779566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
47887753ddeSHong Zhang   }
47987753ddeSHong Zhang 
48087753ddeSHong Zhang   for (i = 0; i < nrecvs; i++) {
48187753ddeSHong Zhang     /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */
48287753ddeSHong Zhang     nrows_from = rstarts[i + 1] - rstarts[i];
48387753ddeSHong Zhang     disp[0]    = 0;
4849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(1, nrows_from, disp, MPIU_SCALAR, &type1));
4859566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1, 0, nz * sizeof(PetscScalar), &rtype[i]));
4869566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&rtype[i]));
4879566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
48887753ddeSHong Zhang   }
48987753ddeSHong Zhang 
4909566063dSJacob Faibussowitsch   PetscCall(PetscFree(disp));
4919566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
4929566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
4939566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
4949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
4959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
4969566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
4976718818eSStefano Zampini 
4986718818eSStefano Zampini   C->product->data       = contents;
4996718818eSStefano Zampini   C->product->destroy    = MatMPIAIJ_MPIDenseDestroy;
5004222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense;
5019123193aSHong Zhang   PetscFunctionReturn(0);
5029123193aSHong Zhang }
5039123193aSHong Zhang 
50493aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat, Mat, Mat, const PetscBool);
505f32d5d43SBarry Smith /*
5062636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
5072636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
50887753ddeSHong Zhang 
50987753ddeSHong Zhang     Input: Bbidx = 0: B = Bb
51087753ddeSHong Zhang                  = 1: B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense()
511f32d5d43SBarry Smith */
5129371c9d4SSatish Balay PetscErrorCode              MatMPIDenseScatter(Mat A, Mat B, PetscInt Bbidx, Mat C, Mat *outworkB) {
513f32d5d43SBarry Smith                Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
5141683a169SBarry Smith                const PetscScalar *b;
51587753ddeSHong Zhang                PetscScalar       *rvalues;
516f32d5d43SBarry Smith                VecScatter         ctx = aij->Mvctx;
51787753ddeSHong Zhang                const PetscInt    *sindices, *sstarts, *rstarts;
5183515ee7fSJunchao Zhang                const PetscMPIInt *sprocs, *rprocs;
5196718818eSStefano Zampini                PetscInt           i, nsends, nrecvs;
520f32d5d43SBarry Smith                MPI_Request       *swaits, *rwaits;
521ce94432eSBarry Smith                MPI_Comm           comm;
5226718818eSStefano Zampini                PetscMPIInt        tag = ((PetscObject)ctx)->tag, ncols = B->cmap->N, nrows = aij->B->cmap->n, nsends_mpi, nrecvs_mpi;
5234324174eSBarry Smith                MPIAIJ_MPIDense   *contents;
5244324174eSBarry Smith                Mat                workB;
52587753ddeSHong Zhang                MPI_Datatype      *stype, *rtype;
5266718818eSStefano Zampini                PetscInt           blda;
527f32d5d43SBarry Smith 
528f32d5d43SBarry Smith                PetscFunctionBegin;
5296718818eSStefano Zampini                MatCheckProduct(C, 4);
53028b400f6SJacob Faibussowitsch                PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5316718818eSStefano Zampini                contents = (MPIAIJ_MPIDense *)C->product->data;
5329566063dSJacob Faibussowitsch                PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL /*bs*/));
5339566063dSJacob Faibussowitsch                PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL /*bs*/));
5349566063dSJacob Faibussowitsch                PetscCall(PetscMPIIntCast(nsends, &nsends_mpi));
5359566063dSJacob Faibussowitsch                PetscCall(PetscMPIIntCast(nrecvs, &nrecvs_mpi));
536b45e3bf4SStefano Zampini                if (Bbidx == 0) workB = *outworkB = contents->workB;
537b45e3bf4SStefano Zampini   else workB = *outworkB = contents->workB1;
53808401ef6SPierre Jolivet   PetscCheck(nrows == workB->rmap->n, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d", workB->cmap->n, nrows);
5393515ee7fSJunchao Zhang                swaits = contents->swaits;
5403515ee7fSJunchao Zhang                rwaits = contents->rwaits;
541f32d5d43SBarry Smith 
5429566063dSJacob Faibussowitsch                PetscCall(MatDenseGetArrayRead(B, &b));
5439566063dSJacob Faibussowitsch                PetscCall(MatDenseGetLDA(B, &blda));
54408401ef6SPierre Jolivet                PetscCheck(blda == contents->blda, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT, blda, contents->blda);
5459566063dSJacob Faibussowitsch                PetscCall(MatDenseGetArray(workB, &rvalues));
546f32d5d43SBarry Smith 
54787753ddeSHong Zhang                /* Post recv, use MPI derived data type to save memory */
5489566063dSJacob Faibussowitsch                PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
54987753ddeSHong Zhang                rtype = contents->rtype;
550*48a46eb9SPierre Jolivet                for (i = 0; i < nrecvs; i++) PetscCallMPI(MPI_Irecv(rvalues + (rstarts[i] - rstarts[0]), ncols, rtype[i], rprocs[i], tag, comm, rwaits + i));
551f32d5d43SBarry Smith 
55287753ddeSHong Zhang   stype = contents->stype;
553*48a46eb9SPierre Jolivet                for (i = 0; i < nsends; i++) PetscCallMPI(MPI_Isend(b, ncols, stype[i], sprocs[i], tag, comm, swaits + i));
5542636ff26SBarry Smith 
5559566063dSJacob Faibussowitsch   if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi, rwaits, MPI_STATUSES_IGNORE));
5569566063dSJacob Faibussowitsch   if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi, swaits, MPI_STATUSES_IGNORE));
557f32d5d43SBarry Smith 
5589566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL));
5599566063dSJacob Faibussowitsch                PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL));
5609566063dSJacob Faibussowitsch                PetscCall(MatDenseRestoreArrayRead(B, &b));
5619566063dSJacob Faibussowitsch                PetscCall(MatDenseRestoreArray(workB, &rvalues));
56287753ddeSHong Zhang                PetscFunctionReturn(0);
56387753ddeSHong Zhang }
564f32d5d43SBarry Smith 
5659371c9d4SSatish Balay static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A, Mat B, Mat C) {
566f32d5d43SBarry Smith   Mat_MPIAIJ      *aij    = (Mat_MPIAIJ *)A->data;
567f32d5d43SBarry Smith   Mat_MPIDense    *bdense = (Mat_MPIDense *)B->data;
568f32d5d43SBarry Smith   Mat_MPIDense    *cdense = (Mat_MPIDense *)C->data;
569f32d5d43SBarry Smith   Mat              workB;
57087753ddeSHong Zhang   MPIAIJ_MPIDense *contents;
5719123193aSHong Zhang 
5729123193aSHong Zhang   PetscFunctionBegin;
5736718818eSStefano Zampini   MatCheckProduct(C, 3);
57428b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5756718818eSStefano Zampini   contents = (MPIAIJ_MPIDense *)C->product->data;
576f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B */
5775ea7661aSPierre Jolivet   /* TODO: this calls a symbolic multiplication every time, which could be avoided */
5789566063dSJacob Faibussowitsch   PetscCall(MatMatMult(aij->A, bdense->A, MAT_REUSE_MATRIX, PETSC_DEFAULT, &cdense->A));
5795ea7661aSPierre Jolivet   if (contents->workB->cmap->n == B->cmap->N) {
58087753ddeSHong Zhang     /* get off processor parts of B needed to complete C=A*B */
5819566063dSJacob Faibussowitsch     PetscCall(MatMPIDenseScatter(A, B, 0, C, &workB));
582f32d5d43SBarry Smith 
583f32d5d43SBarry Smith     /* off-diagonal block of A times nonlocal rows of B */
5849566063dSJacob Faibussowitsch     PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
58587753ddeSHong Zhang   } else {
5865ea7661aSPierre Jolivet     Mat       Bb, Cb;
5875ea7661aSPierre Jolivet     PetscInt  BN = B->cmap->N, n = contents->workB->cmap->n, i;
588664c1e85SStefano Zampini     PetscBool ccpu;
58987753ddeSHong Zhang 
59008401ef6SPierre Jolivet     PetscCheck(n > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Column block size %" PetscInt_FMT " must be positive", n);
591664c1e85SStefano Zampini     /* Prevent from unneeded copies back and forth from the GPU
592664c1e85SStefano Zampini        when getting and restoring the submatrix
593664c1e85SStefano Zampini        We need a proper GPU code for AIJ * dense in parallel */
5949566063dSJacob Faibussowitsch     PetscCall(MatBoundToCPU(C, &ccpu));
5959566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C, PETSC_TRUE));
5965ea7661aSPierre Jolivet     for (i = 0; i < BN; i += n) {
597a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(B, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Bb));
598a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(C, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Cb));
59987753ddeSHong Zhang 
6005ea7661aSPierre Jolivet       /* get off processor parts of B needed to complete C=A*B */
6019566063dSJacob Faibussowitsch       PetscCall(MatMPIDenseScatter(A, Bb, (i + n) > BN, C, &workB));
6025ea7661aSPierre Jolivet 
6035ea7661aSPierre Jolivet       /* off-diagonal block of A times nonlocal rows of B */
6045ea7661aSPierre Jolivet       cdense = (Mat_MPIDense *)Cb->data;
6059566063dSJacob Faibussowitsch       PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
6069566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(B, &Bb));
6079566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(C, &Cb));
60887753ddeSHong Zhang     }
6099566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C, ccpu));
61087753ddeSHong Zhang   }
6119123193aSHong Zhang   PetscFunctionReturn(0);
6129123193aSHong Zhang }
613cf1a0672SHong Zhang 
6149371c9d4SSatish Balay PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A, Mat P, Mat C) {
615cf1a0672SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
616cf1a0672SHong Zhang   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data;
617cf1a0672SHong Zhang   Mat_SeqAIJ        *cd = (Mat_SeqAIJ *)(c->A)->data, *co = (Mat_SeqAIJ *)(c->B)->data;
618cf1a0672SHong Zhang   PetscInt          *adi = ad->i, *adj, *aoi = ao->i, *aoj;
619cf1a0672SHong Zhang   PetscScalar       *ada, *aoa, *cda = cd->a, *coa = co->a;
620cf1a0672SHong Zhang   Mat_SeqAIJ        *p_loc, *p_oth;
621cf1a0672SHong Zhang   PetscInt          *pi_loc, *pj_loc, *pi_oth, *pj_oth, *pj;
62229825010SHong Zhang   PetscScalar       *pa_loc, *pa_oth, *pa, valtmp, *ca;
62329825010SHong Zhang   PetscInt           cm = C->rmap->n, anz, pnz;
6246718818eSStefano Zampini   Mat_APMPI         *ptap;
62580da8df7SHong Zhang   PetscScalar       *apa_sparse;
626ce496241SStefano Zampini   const PetscScalar *dummy;
627cf1a0672SHong Zhang   PetscInt          *api, *apj, *apJ, i, j, k, row;
62829825010SHong Zhang   PetscInt           cstart = C->cmap->rstart;
62929825010SHong Zhang   PetscInt           cdnz, conz, k0, k1, nextp;
630a7c7454dSHong Zhang   MPI_Comm           comm;
631a7c7454dSHong Zhang   PetscMPIInt        size;
6321634b032SHong Zhang 
6331634b032SHong Zhang   PetscFunctionBegin;
6346718818eSStefano Zampini   MatCheckProduct(C, 3);
6356718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
63628b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
6379566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
6389566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
639aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
640a7c7454dSHong Zhang 
64165e4b4d4SStefano Zampini   /* flag CPU mask for C */
64265e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
64365e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
64465e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
64565e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
64665e4b4d4SStefano Zampini #endif
64780da8df7SHong Zhang   apa_sparse = ptap->apa;
64880da8df7SHong Zhang 
649cf1a0672SHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
650cf1a0672SHong Zhang   /*-----------------------------------------------------*/
651cf1a0672SHong Zhang   /* update numerical values of P_oth and P_loc */
6529566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
6539566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
654cf1a0672SHong Zhang 
655cf1a0672SHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
656cf1a0672SHong Zhang   /*----------------------------------------------------------*/
657cf1a0672SHong Zhang   /* get data from symbolic products */
658cf1a0672SHong Zhang   p_loc  = (Mat_SeqAIJ *)(ptap->P_loc)->data;
6599371c9d4SSatish Balay   pi_loc = p_loc->i;
6609371c9d4SSatish Balay   pj_loc = p_loc->j;
6619371c9d4SSatish Balay   pa_loc = p_loc->a;
662a7c7454dSHong Zhang   if (size > 1) {
663a7c7454dSHong Zhang     p_oth  = (Mat_SeqAIJ *)(ptap->P_oth)->data;
6649371c9d4SSatish Balay     pi_oth = p_oth->i;
6659371c9d4SSatish Balay     pj_oth = p_oth->j;
6669371c9d4SSatish Balay     pa_oth = p_oth->a;
66720e3dc75SHong Zhang   } else {
6689371c9d4SSatish Balay     p_oth  = NULL;
6699371c9d4SSatish Balay     pi_oth = NULL;
6709371c9d4SSatish Balay     pj_oth = NULL;
6719371c9d4SSatish Balay     pa_oth = NULL;
672a7c7454dSHong Zhang   }
673cf1a0672SHong Zhang 
674ce496241SStefano Zampini   /* trigger copy to CPU */
6759566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy));
6769566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy));
6779566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy));
6789566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy));
67929825010SHong Zhang   api = ptap->api;
68029825010SHong Zhang   apj = ptap->apj;
681cf1a0672SHong Zhang   for (i = 0; i < cm; i++) {
68229825010SHong Zhang     apJ = apj + api[i];
68329825010SHong Zhang 
684cf1a0672SHong Zhang     /* diagonal portion of A */
685cf1a0672SHong Zhang     anz = adi[i + 1] - adi[i];
686cf1a0672SHong Zhang     adj = ad->j + adi[i];
687cf1a0672SHong Zhang     ada = ad->a + adi[i];
688cf1a0672SHong Zhang     for (j = 0; j < anz; j++) {
689cf1a0672SHong Zhang       row    = adj[j];
690cf1a0672SHong Zhang       pnz    = pi_loc[row + 1] - pi_loc[row];
691cf1a0672SHong Zhang       pj     = pj_loc + pi_loc[row];
692cf1a0672SHong Zhang       pa     = pa_loc + pi_loc[row];
69329825010SHong Zhang       /* perform sparse axpy */
694cf1a0672SHong Zhang       valtmp = ada[j];
69529825010SHong Zhang       nextp  = 0;
69629825010SHong Zhang       for (k = 0; nextp < pnz; k++) {
69729825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
69829825010SHong Zhang           apa_sparse[k] += valtmp * pa[nextp++];
69929825010SHong Zhang         }
7001634b032SHong Zhang       }
7019566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * pnz));
702cf1a0672SHong Zhang     }
7031634b032SHong Zhang 
704cf1a0672SHong Zhang     /* off-diagonal portion of A */
705cf1a0672SHong Zhang     anz = aoi[i + 1] - aoi[i];
706cf1a0672SHong Zhang     aoj = ao->j + aoi[i];
707cf1a0672SHong Zhang     aoa = ao->a + aoi[i];
708cf1a0672SHong Zhang     for (j = 0; j < anz; j++) {
709cf1a0672SHong Zhang       row    = aoj[j];
710cf1a0672SHong Zhang       pnz    = pi_oth[row + 1] - pi_oth[row];
711cf1a0672SHong Zhang       pj     = pj_oth + pi_oth[row];
712cf1a0672SHong Zhang       pa     = pa_oth + pi_oth[row];
71329825010SHong Zhang       /* perform sparse axpy */
714cf1a0672SHong Zhang       valtmp = aoa[j];
71529825010SHong Zhang       nextp  = 0;
71629825010SHong Zhang       for (k = 0; nextp < pnz; k++) {
71729825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
71829825010SHong Zhang           apa_sparse[k] += valtmp * pa[nextp++];
71929825010SHong Zhang         }
720cf1a0672SHong Zhang       }
7219566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * pnz));
722cf1a0672SHong Zhang     }
7231634b032SHong Zhang 
724cf1a0672SHong Zhang     /* set values in C */
725cf1a0672SHong Zhang     cdnz = cd->i[i + 1] - cd->i[i];
726cf1a0672SHong Zhang     conz = co->i[i + 1] - co->i[i];
7271634b032SHong Zhang 
728910cf402Sprj-     /* 1st off-diagonal part of C */
729cf1a0672SHong Zhang     ca = coa + co->i[i];
730cf1a0672SHong Zhang     k  = 0;
731cf1a0672SHong Zhang     for (k0 = 0; k0 < conz; k0++) {
732cf1a0672SHong Zhang       if (apJ[k] >= cstart) break;
73329825010SHong Zhang       ca[k0]        = apa_sparse[k];
73429825010SHong Zhang       apa_sparse[k] = 0.0;
735cf1a0672SHong Zhang       k++;
736cf1a0672SHong Zhang     }
7371634b032SHong Zhang 
738cf1a0672SHong Zhang     /* diagonal part of C */
739cf1a0672SHong Zhang     ca = cda + cd->i[i];
740cf1a0672SHong Zhang     for (k1 = 0; k1 < cdnz; k1++) {
74129825010SHong Zhang       ca[k1]        = apa_sparse[k];
74229825010SHong Zhang       apa_sparse[k] = 0.0;
743cf1a0672SHong Zhang       k++;
744cf1a0672SHong Zhang     }
745cf1a0672SHong Zhang 
746910cf402Sprj-     /* 2nd off-diagonal part of C */
747cf1a0672SHong Zhang     ca = coa + co->i[i];
748cf1a0672SHong Zhang     for (; k0 < conz; k0++) {
74929825010SHong Zhang       ca[k0]        = apa_sparse[k];
75029825010SHong Zhang       apa_sparse[k] = 0.0;
751cf1a0672SHong Zhang       k++;
752cf1a0672SHong Zhang     }
753cf1a0672SHong Zhang   }
7549566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
7559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
756cf1a0672SHong Zhang   PetscFunctionReturn(0);
757cf1a0672SHong Zhang }
758cf1a0672SHong Zhang 
7590fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */
7609371c9d4SSatish Balay PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A, Mat P, PetscReal fill, Mat C) {
761ce94432eSBarry Smith   MPI_Comm           comm;
762a7c7454dSHong Zhang   PetscMPIInt        size;
7633cdca5ebSHong Zhang   Mat_APMPI         *ptap;
7640298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
7656718818eSStefano Zampini   Mat_MPIAIJ        *a  = (Mat_MPIAIJ *)A->data;
766cf1a0672SHong Zhang   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data, *p_loc, *p_oth;
7677dbaa2c6Sandi selinger   PetscInt          *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
768cf1a0672SHong Zhang   PetscInt          *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
7698c78258cSHong Zhang   PetscInt           i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi, *lnk, apnz_max = 1;
770e5ab8c0aSKarl Rupp   PetscInt           am = A->rmap->n, pn = P->cmap->n, pm = P->rmap->n, lsize = pn + 20;
771cf1a0672SHong Zhang   PetscReal          afill;
772b92f168fSBarry Smith   MatType            mtype;
773cf1a0672SHong Zhang 
774cf1a0672SHong Zhang   PetscFunctionBegin;
7756718818eSStefano Zampini   MatCheckProduct(C, 4);
77628b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
7779566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
7789566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
779a7c7454dSHong Zhang 
7803cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
7819566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
782cf1a0672SHong Zhang 
783cf1a0672SHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
7849566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
78519f0e57aSHong Zhang 
786cf1a0672SHong Zhang   /* get P_loc by taking all local rows of P */
7879566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
788cf1a0672SHong Zhang 
789cf1a0672SHong Zhang   p_loc  = (Mat_SeqAIJ *)(ptap->P_loc)->data;
7909371c9d4SSatish Balay   pi_loc = p_loc->i;
7919371c9d4SSatish Balay   pj_loc = p_loc->j;
792a7c7454dSHong Zhang   if (size > 1) {
793a7c7454dSHong Zhang     p_oth  = (Mat_SeqAIJ *)(ptap->P_oth)->data;
7949371c9d4SSatish Balay     pi_oth = p_oth->i;
7959371c9d4SSatish Balay     pj_oth = p_oth->j;
796968382fdSHong Zhang   } else {
79720e3dc75SHong Zhang     p_oth  = NULL;
7989371c9d4SSatish Balay     pi_oth = NULL;
7999371c9d4SSatish Balay     pj_oth = NULL;
800a7c7454dSHong Zhang   }
801cf1a0672SHong Zhang 
802cf1a0672SHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
803cf1a0672SHong Zhang   /*-------------------------------------------------------------------*/
8049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &api));
805cf1a0672SHong Zhang   ptap->api = api;
806cf1a0672SHong Zhang   api[0]    = 0;
807cf1a0672SHong Zhang 
8089566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(lsize, &lnk));
809cf1a0672SHong Zhang 
810cf1a0672SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
8119566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
812cf1a0672SHong Zhang   current_space = free_space;
813d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
814cf1a0672SHong Zhang   for (i = 0; i < am; i++) {
815cf1a0672SHong Zhang     /* diagonal portion of A */
816cf1a0672SHong Zhang     nzi = adi[i + 1] - adi[i];
817cf1a0672SHong Zhang     for (j = 0; j < nzi; j++) {
818cf1a0672SHong Zhang       row  = *adj++;
819cf1a0672SHong Zhang       pnz  = pi_loc[row + 1] - pi_loc[row];
820cf1a0672SHong Zhang       Jptr = pj_loc + pi_loc[row];
8218a210135Sandi selinger       /* Expand list if it is not long enough */
8228328dd82Sandi selinger       if (pnz + apnz_max > lsize) {
8238328dd82Sandi selinger         lsize = pnz + apnz_max;
8249566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8258a210135Sandi selinger       }
826cf1a0672SHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
8279566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8288a210135Sandi selinger       apnz       = *lnk; /* The first element in the list is the number of items in the list */
8298a210135Sandi selinger       api[i + 1] = api[i] + apnz;
8308c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
831cf1a0672SHong Zhang     }
832cf1a0672SHong Zhang     /* off-diagonal portion of A */
833cf1a0672SHong Zhang     nzi = aoi[i + 1] - aoi[i];
834cf1a0672SHong Zhang     for (j = 0; j < nzi; j++) {
835cf1a0672SHong Zhang       row  = *aoj++;
836cf1a0672SHong Zhang       pnz  = pi_oth[row + 1] - pi_oth[row];
837cf1a0672SHong Zhang       Jptr = pj_oth + pi_oth[row];
8388a210135Sandi selinger       /* Expand list if it is not long enough */
8398328dd82Sandi selinger       if (pnz + apnz_max > lsize) {
8408328dd82Sandi selinger         lsize = pnz + apnz_max;
8419566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8428a210135Sandi selinger       }
8438a210135Sandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
8449566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8458a210135Sandi selinger       apnz       = *lnk; /* The first element in the list is the number of items in the list */
8468a210135Sandi selinger       api[i + 1] = api[i] + apnz;
8478c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
848cf1a0672SHong Zhang     }
8498c78258cSHong Zhang 
8508c78258cSHong Zhang     /* add missing diagonal entry */
8518c78258cSHong Zhang     if (C->force_diagonals) {
8528c78258cSHong Zhang       j = i + rstart; /* column index */
8539566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1, &j, lnk));
8548c78258cSHong Zhang     }
8558c78258cSHong Zhang 
856f84c536bSHong Zhang     apnz       = *lnk;
857cf1a0672SHong Zhang     api[i + 1] = api[i] + apnz;
8588a210135Sandi selinger     if (apnz > apnz_max) apnz_max = apnz;
859cf1a0672SHong Zhang 
860cf1a0672SHong Zhang     /* if free space is not available, double the total space in the list */
861cf1a0672SHong Zhang     if (current_space->local_remaining < apnz) {
8629566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), &current_space));
863cf1a0672SHong Zhang       nspacedouble++;
864cf1a0672SHong Zhang     }
865cf1a0672SHong Zhang 
866cf1a0672SHong Zhang     /* Copy data into free space, then initialize lnk */
8679566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(apnz, current_space->array, lnk));
8689566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
8692205254eSKarl Rupp 
870cf1a0672SHong Zhang     current_space->array += apnz;
871cf1a0672SHong Zhang     current_space->local_used += apnz;
872cf1a0672SHong Zhang     current_space->local_remaining -= apnz;
873cf1a0672SHong Zhang   }
874cf1a0672SHong Zhang 
875cf1a0672SHong Zhang   /* Allocate space for apj, initialize apj, and */
876cf1a0672SHong Zhang   /* destroy list of free space and other temporary array(s) */
8779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(api[am] + 1, &ptap->apj));
878cf1a0672SHong Zhang   apj = ptap->apj;
8799566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
8809566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
881cf1a0672SHong Zhang 
8824222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
883cf1a0672SHong Zhang   /*----------------------------------------------------*/
8849566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
8859566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
8869566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
8879566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
8889566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
889d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
890cf1a0672SHong Zhang 
8914222ddf1SHong Zhang   /* malloc apa for assembly C */
8929566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(apnz_max, &ptap->apa));
89317f75172Sandi selinger 
8949566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
8959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
8969566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
8979566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
898cf1a0672SHong Zhang 
8994222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
9004222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
901cf1a0672SHong Zhang 
9024222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
9036718818eSStefano Zampini   C->product->data    = ptap;
9046718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
905cf1a0672SHong Zhang 
906cf1a0672SHong Zhang   /* set MatInfo */
907118727c9SMark F. Adams   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
908cf1a0672SHong Zhang   if (afill < 1.0) afill = 1.0;
9094222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
9104222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
9114222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
912cf1a0672SHong Zhang 
913cf1a0672SHong Zhang #if defined(PETSC_USE_INFO)
914cf1a0672SHong Zhang   if (api[am]) {
9159566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
9169566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
917cf1a0672SHong Zhang   } else {
9189566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
919cf1a0672SHong Zhang   }
920cf1a0672SHong Zhang #endif
9211634b032SHong Zhang   PetscFunctionReturn(0);
9221634b032SHong Zhang }
923f96d37fcSHong Zhang 
924a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication.  */
925a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the    */
926a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once.     */
9279371c9d4SSatish Balay static void Merge3SortedArrays(PetscInt size1, PetscInt *in1, PetscInt size2, PetscInt *in2, PetscInt size3, PetscInt *in3, PetscInt *size4, PetscInt *out) {
928a9d7e0ccSandi selinger   int i = 0, j = 0, k = 0, l = 0;
929a9d7e0ccSandi selinger 
930a9d7e0ccSandi selinger   /* Traverse all three arrays */
931a9d7e0ccSandi selinger   while (i < size1 && j < size2 && k < size3) {
932a9d7e0ccSandi selinger     if (in1[i] < in2[j] && in1[i] < in3[k]) {
933a9d7e0ccSandi selinger       out[l++] = in1[i++];
9349371c9d4SSatish Balay     } else if (in2[j] < in1[i] && in2[j] < in3[k]) {
935a9d7e0ccSandi selinger       out[l++] = in2[j++];
9369371c9d4SSatish Balay     } else if (in3[k] < in1[i] && in3[k] < in2[j]) {
937a9d7e0ccSandi selinger       out[l++] = in3[k++];
9389371c9d4SSatish Balay     } else if (in1[i] == in2[j] && in1[i] < in3[k]) {
939a9d7e0ccSandi selinger       out[l++] = in1[i];
940a9d7e0ccSandi selinger       i++, j++;
9419371c9d4SSatish Balay     } else if (in1[i] == in3[k] && in1[i] < in2[j]) {
942a9d7e0ccSandi selinger       out[l++] = in1[i];
943a9d7e0ccSandi selinger       i++, k++;
9449371c9d4SSatish Balay     } else if (in3[k] == in2[j] && in2[j] < in1[i]) {
945a9d7e0ccSandi selinger       out[l++] = in2[j];
946a9d7e0ccSandi selinger       k++, j++;
9479371c9d4SSatish Balay     } else if (in1[i] == in2[j] && in1[i] == in3[k]) {
948a9d7e0ccSandi selinger       out[l++] = in1[i];
949a9d7e0ccSandi selinger       i++, j++, k++;
950a9d7e0ccSandi selinger     }
951a9d7e0ccSandi selinger   }
952a9d7e0ccSandi selinger 
953a9d7e0ccSandi selinger   /* Traverse two remaining arrays */
954a9d7e0ccSandi selinger   while (i < size1 && j < size2) {
955a9d7e0ccSandi selinger     if (in1[i] < in2[j]) {
956a9d7e0ccSandi selinger       out[l++] = in1[i++];
9579371c9d4SSatish Balay     } else if (in1[i] > in2[j]) {
958a9d7e0ccSandi selinger       out[l++] = in2[j++];
9599371c9d4SSatish Balay     } else {
960a9d7e0ccSandi selinger       out[l++] = in1[i];
961a9d7e0ccSandi selinger       i++, j++;
962a9d7e0ccSandi selinger     }
963a9d7e0ccSandi selinger   }
964a9d7e0ccSandi selinger 
965a9d7e0ccSandi selinger   while (i < size1 && k < size3) {
966a9d7e0ccSandi selinger     if (in1[i] < in3[k]) {
967a9d7e0ccSandi selinger       out[l++] = in1[i++];
9689371c9d4SSatish Balay     } else if (in1[i] > in3[k]) {
969a9d7e0ccSandi selinger       out[l++] = in3[k++];
9709371c9d4SSatish Balay     } else {
971a9d7e0ccSandi selinger       out[l++] = in1[i];
972a9d7e0ccSandi selinger       i++, k++;
973a9d7e0ccSandi selinger     }
974a9d7e0ccSandi selinger   }
975a9d7e0ccSandi selinger 
976a9d7e0ccSandi selinger   while (k < size3 && j < size2) {
977a9d7e0ccSandi selinger     if (in3[k] < in2[j]) {
978a9d7e0ccSandi selinger       out[l++] = in3[k++];
9799371c9d4SSatish Balay     } else if (in3[k] > in2[j]) {
980a9d7e0ccSandi selinger       out[l++] = in2[j++];
9819371c9d4SSatish Balay     } else {
982a9d7e0ccSandi selinger       out[l++] = in3[k];
983a9d7e0ccSandi selinger       k++, j++;
984a9d7e0ccSandi selinger     }
985a9d7e0ccSandi selinger   }
986a9d7e0ccSandi selinger 
987a9d7e0ccSandi selinger   /* Traverse one remaining array */
988a9d7e0ccSandi selinger   while (i < size1) out[l++] = in1[i++];
989a9d7e0ccSandi selinger   while (j < size2) out[l++] = in2[j++];
990a9d7e0ccSandi selinger   while (k < size3) out[l++] = in3[k++];
991a9d7e0ccSandi selinger 
992a9d7e0ccSandi selinger   *size4 = l;
993a9d7e0ccSandi selinger }
994a9d7e0ccSandi selinger 
99573b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and  */
99673b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential)      */
99773b67375Sandi selinger /* matrix-matrix multiplications.  */
9989371c9d4SSatish Balay PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C) {
999a9d7e0ccSandi selinger   MPI_Comm           comm;
1000a9d7e0ccSandi selinger   PetscMPIInt        size;
10013cdca5ebSHong Zhang   Mat_APMPI         *ptap;
1002a9d7e0ccSandi selinger   PetscFreeSpaceList free_space_diag = NULL, current_space = NULL;
1003a9d7e0ccSandi selinger   Mat_MPIAIJ        *a  = (Mat_MPIAIJ *)A->data;
1004a9d7e0ccSandi selinger   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data, *p_loc;
1005a9d7e0ccSandi selinger   Mat_MPIAIJ        *p = (Mat_MPIAIJ *)P->data;
1006a9d7e0ccSandi selinger   Mat_SeqAIJ        *adpd_seq, *p_off, *aopoth_seq;
1007a9d7e0ccSandi selinger   PetscInt           adponz, adpdnz;
10087dbaa2c6Sandi selinger   PetscInt          *pi_loc, *dnz, *onz;
1009a9d7e0ccSandi selinger   PetscInt          *adi = ad->i, *adj = ad->j, *aoi = ao->i, rstart = A->rmap->rstart;
10109371c9d4SSatish Balay   PetscInt          *lnk, i, i1 = 0, pnz, row, *adpoi, *adpoj, *api, *adpoJ, *aopJ, *apJ, *Jptr, aopnz, nspacedouble = 0, j, nzi, *apj, apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj;
1011a016958eSandi selinger   PetscInt           am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n, p_colstart, p_colend;
1012a9d7e0ccSandi selinger   PetscBT            lnkbt;
1013a9d7e0ccSandi selinger   PetscReal          afill;
1014a9d7e0ccSandi selinger   PetscMPIInt        rank;
1015a9d7e0ccSandi selinger   Mat                adpd, aopoth;
1016b92f168fSBarry Smith   MatType            mtype;
1017e83e5f86SFande Kong   const char        *prefix;
1018a9d7e0ccSandi selinger 
1019a9d7e0ccSandi selinger   PetscFunctionBegin;
10206718818eSStefano Zampini   MatCheckProduct(C, 4);
102128b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
10229566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
10239566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
10249566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
10259566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend));
1026a9d7e0ccSandi selinger 
10273cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
10289566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1029a9d7e0ccSandi selinger 
1030a9d7e0ccSandi selinger   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
10319566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1032a9d7e0ccSandi selinger 
1033a9d7e0ccSandi selinger   /* get P_loc by taking all local rows of P */
10349566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
1035a9d7e0ccSandi selinger 
1036a9d7e0ccSandi selinger   p_loc  = (Mat_SeqAIJ *)(ptap->P_loc)->data;
1037a9d7e0ccSandi selinger   pi_loc = p_loc->i;
1038a9d7e0ccSandi selinger 
1039a9d7e0ccSandi selinger   /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */
10409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &api));
10419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &adpoi));
1042a9d7e0ccSandi selinger 
1043a9d7e0ccSandi selinger   adpoi[0]  = 0;
1044a9d7e0ccSandi selinger   ptap->api = api;
1045a9d7e0ccSandi selinger   api[0]    = 0;
1046a9d7e0ccSandi selinger 
1047a9d7e0ccSandi selinger   /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */
10489566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
1049d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
1050a9d7e0ccSandi selinger 
1051a9d7e0ccSandi selinger   /* Symbolic calc of A_loc_diag * P_loc_diag */
10529566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
10539566063dSJacob Faibussowitsch   PetscCall(MatProductCreate(a->A, p->A, NULL, &adpd));
10549566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
10559566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(adpd, prefix));
10569566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(adpd, "inner_diag_"));
10574222ddf1SHong Zhang 
10589566063dSJacob Faibussowitsch   PetscCall(MatProductSetType(adpd, MATPRODUCT_AB));
10599566063dSJacob Faibussowitsch   PetscCall(MatProductSetAlgorithm(adpd, "sorted"));
10609566063dSJacob Faibussowitsch   PetscCall(MatProductSetFill(adpd, fill));
10619566063dSJacob Faibussowitsch   PetscCall(MatProductSetFromOptions(adpd));
10628c78258cSHong Zhang 
10638c78258cSHong Zhang   adpd->force_diagonals = C->force_diagonals;
10649566063dSJacob Faibussowitsch   PetscCall(MatProductSymbolic(adpd));
10654222ddf1SHong Zhang 
1066a9d7e0ccSandi selinger   adpd_seq = (Mat_SeqAIJ *)((adpd)->data);
10679371c9d4SSatish Balay   adpdi    = adpd_seq->i;
10689371c9d4SSatish Balay   adpdj    = adpd_seq->j;
1069a9d7e0ccSandi selinger   p_off    = (Mat_SeqAIJ *)((p->B)->data);
10709371c9d4SSatish Balay   poff_i   = p_off->i;
10719371c9d4SSatish Balay   poff_j   = p_off->j;
1072a9d7e0ccSandi selinger 
107373b67375Sandi selinger   /* j_temp stores indices of a result row before they are added to the linked list */
10749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pN + 2, &j_temp));
1075a9d7e0ccSandi selinger 
1076a9d7e0ccSandi selinger   /* Symbolic calc of the A_diag * p_loc_off */
1077a9d7e0ccSandi selinger   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
10789566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space_diag));
1079a9d7e0ccSandi selinger   current_space = free_space_diag;
1080a9d7e0ccSandi selinger 
1081a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1082a9d7e0ccSandi selinger     /* A_diag * P_loc_off */
1083a9d7e0ccSandi selinger     nzi = adi[i + 1] - adi[i];
1084a9d7e0ccSandi selinger     for (j = 0; j < nzi; j++) {
1085a9d7e0ccSandi selinger       row  = *adj++;
1086a9d7e0ccSandi selinger       pnz  = poff_i[row + 1] - poff_i[row];
1087a9d7e0ccSandi selinger       Jptr = poff_j + poff_i[row];
10889371c9d4SSatish Balay       for (i1 = 0; i1 < pnz; i1++) { j_temp[i1] = p->garray[Jptr[i1]]; }
1089a9d7e0ccSandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
10909566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, j_temp, lnk, lnkbt));
1091a9d7e0ccSandi selinger     }
1092a9d7e0ccSandi selinger 
1093a9d7e0ccSandi selinger     adponz       = lnk[0];
1094a9d7e0ccSandi selinger     adpoi[i + 1] = adpoi[i] + adponz;
1095a9d7e0ccSandi selinger 
1096a9d7e0ccSandi selinger     /* if free space is not available, double the total space in the list */
1097a9d7e0ccSandi selinger     if (current_space->local_remaining < adponz) {
10989566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz, current_space->total_array_size), &current_space));
1099a9d7e0ccSandi selinger       nspacedouble++;
1100a9d7e0ccSandi selinger     }
1101a9d7e0ccSandi selinger 
1102a9d7e0ccSandi selinger     /* Copy data into free space, then initialize lnk */
11039566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN, adponz, current_space->array, lnk, lnkbt));
1104a9d7e0ccSandi selinger 
1105a9d7e0ccSandi selinger     current_space->array += adponz;
1106a9d7e0ccSandi selinger     current_space->local_used += adponz;
1107a9d7e0ccSandi selinger     current_space->local_remaining -= adponz;
1108a9d7e0ccSandi selinger   }
1109a9d7e0ccSandi selinger 
1110a9d7e0ccSandi selinger   /* Symbolic calc of A_off * P_oth */
11119566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(a->B, prefix));
11129566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(a->B, "inner_offdiag_"));
11139566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &aopoth));
11149566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth));
1115a9d7e0ccSandi selinger   aopoth_seq = (Mat_SeqAIJ *)((aopoth)->data);
11169371c9d4SSatish Balay   aopothi    = aopoth_seq->i;
11179371c9d4SSatish Balay   aopothj    = aopoth_seq->j;
1118a9d7e0ccSandi selinger 
1119a9d7e0ccSandi selinger   /* Allocate space for apj, adpj, aopj, ... */
1120a9d7e0ccSandi selinger   /* destroy lists of free space and other temporary array(s) */
1121a9d7e0ccSandi selinger 
11229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am] + 2, &ptap->apj));
11239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(adpoi[am] + 2, &adpoj));
1124a9d7e0ccSandi selinger 
1125a9d7e0ccSandi selinger   /* Copy from linked list to j-array */
11269566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space_diag, adpoj));
11279566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
1128a9d7e0ccSandi selinger 
1129a9d7e0ccSandi selinger   adpoJ = adpoj;
1130a9d7e0ccSandi selinger   adpdJ = adpdj;
1131a9d7e0ccSandi selinger   aopJ  = aopothj;
1132a9d7e0ccSandi selinger   apj   = ptap->apj;
1133a9d7e0ccSandi selinger   apJ   = apj; /* still empty */
1134a9d7e0ccSandi selinger 
1135a9d7e0ccSandi selinger   /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */
1136a9d7e0ccSandi selinger   /* A_diag * P_loc_diag to get A*P */
1137a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1138a9d7e0ccSandi selinger     aopnz  = aopothi[i + 1] - aopothi[i];
1139a9d7e0ccSandi selinger     adponz = adpoi[i + 1] - adpoi[i];
1140a9d7e0ccSandi selinger     adpdnz = adpdi[i + 1] - adpdi[i];
1141a9d7e0ccSandi selinger 
1142a9d7e0ccSandi selinger     /* Correct indices from A_diag*P_diag */
11439371c9d4SSatish Balay     for (i1 = 0; i1 < adpdnz; i1++) { adpdJ[i1] += p_colstart; }
1144a9d7e0ccSandi selinger     /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */
1145a9d7e0ccSandi selinger     Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ);
11469566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, apJ, dnz, onz));
1147a9d7e0ccSandi selinger 
1148a9d7e0ccSandi selinger     aopJ += aopnz;
1149a9d7e0ccSandi selinger     adpoJ += adponz;
1150a9d7e0ccSandi selinger     adpdJ += adpdnz;
1151a9d7e0ccSandi selinger     apJ += apnz;
1152a9d7e0ccSandi selinger     api[i + 1] = api[i] + apnz;
1153a9d7e0ccSandi selinger   }
1154a9d7e0ccSandi selinger 
1155a9d7e0ccSandi selinger   /* malloc apa to store dense row A[i,:]*P */
11569566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN + 2, &ptap->apa));
1157a9d7e0ccSandi selinger 
11584222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
11599566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
11609566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
11619566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
11629566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
11639566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1164d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
116517f75172Sandi selinger 
11669566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
11679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
11689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
11699566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
117017f75172Sandi selinger 
11714222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
11724222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
1173a9d7e0ccSandi selinger 
11744222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
11756718818eSStefano Zampini   C->product->data    = ptap;
11766718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
1177a9d7e0ccSandi selinger 
1178a9d7e0ccSandi selinger   /* set MatInfo */
117973b67375Sandi selinger   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
118073b67375Sandi selinger   if (afill < 1.0) afill = 1.0;
11814222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
11824222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
11834222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1184a9d7e0ccSandi selinger 
1185a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO)
1186a9d7e0ccSandi selinger   if (api[am]) {
11879566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
11889566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
1189a9d7e0ccSandi selinger   } else {
11909566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
1191a9d7e0ccSandi selinger   }
1192a9d7e0ccSandi selinger #endif
1193a9d7e0ccSandi selinger 
11949566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&aopoth));
11959566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&adpd));
11969566063dSJacob Faibussowitsch   PetscCall(PetscFree(j_temp));
11979566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoj));
11989566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoi));
1199a9d7e0ccSandi selinger   PetscFunctionReturn(0);
1200a9d7e0ccSandi selinger }
1201a9d7e0ccSandi selinger 
1202f96d37fcSHong Zhang /*-------------------------------------------------------------------------*/
1203c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */
12049371c9d4SSatish Balay PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P, Mat A, Mat C) {
12056718818eSStefano Zampini   Mat_APMPI *ptap;
120660552ceaSHong Zhang   Mat        Pt;
1207c216dbf3SHong Zhang 
1208c216dbf3SHong Zhang   PetscFunctionBegin;
12096718818eSStefano Zampini   MatCheckProduct(C, 3);
12106718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
121128b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
121228b400f6SJacob Faibussowitsch   PetscCheck(ptap->Pt, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
121360552ceaSHong Zhang 
121460552ceaSHong Zhang   Pt = ptap->Pt;
12151cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(P, Pt));
12169566063dSJacob Faibussowitsch   PetscCall(MatTranspose(P, MAT_REUSE_MATRIX, &Pt));
12179566063dSJacob Faibussowitsch   PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt, A, C));
1218f96d37fcSHong Zhang   PetscFunctionReturn(0);
1219f96d37fcSHong Zhang }
1220f96d37fcSHong Zhang 
1221c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */
12229371c9d4SSatish Balay PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, PetscReal fill, Mat C) {
12233cdca5ebSHong Zhang   Mat_APMPI               *ptap;
12246718818eSStefano Zampini   Mat_MPIAIJ              *p = (Mat_MPIAIJ *)P->data;
1225912837bbSHong Zhang   MPI_Comm                 comm;
1226912837bbSHong Zhang   PetscMPIInt              size, rank;
1227912837bbSHong Zhang   PetscFreeSpaceList       free_space = NULL, current_space = NULL;
12284ede91e3SHong Zhang   PetscInt                 pn = P->cmap->n, aN = A->cmap->N, an = A->cmap->n;
122969be949aSStefano Zampini   PetscInt                *lnk, i, k, nsend, rstart;
1230912837bbSHong Zhang   PetscBT                  lnkbt;
1231ec4bef21SJose E. Roman   PetscMPIInt              tagi, tagj, *len_si, *len_s, *len_ri, nrecv;
1232ec4bef21SJose E. Roman   PETSC_UNUSED PetscMPIInt icompleted = 0;
12338c78258cSHong Zhang   PetscInt               **buf_rj, **buf_ri, **buf_ri_k, row, ncols, *cols;
12347f3e1f30SHong Zhang   PetscInt                 len, proc, *dnz, *onz, *owners, nzi;
1235912837bbSHong Zhang   PetscInt                 nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1236912837bbSHong Zhang   MPI_Request             *swaits, *rwaits;
1237912837bbSHong Zhang   MPI_Status              *sstatus, rstatus;
1238912837bbSHong Zhang   PetscLayout              rowmap;
1239912837bbSHong Zhang   PetscInt                *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */
1240912837bbSHong Zhang   PetscMPIInt             *len_r, *id_r;          /* array of length of comm->size, store send/recv matrix values */
12417f3e1f30SHong Zhang   PetscInt                *Jptr, *prmap = p->garray, con, j, Crmax;
12424ede91e3SHong Zhang   Mat_SeqAIJ              *a_loc, *c_loc, *c_oth;
1243912837bbSHong Zhang   PetscTable               ta;
1244b92f168fSBarry Smith   MatType                  mtype;
1245e83e5f86SFande Kong   const char              *prefix;
1246912837bbSHong Zhang 
1247912837bbSHong Zhang   PetscFunctionBegin;
12489566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
12499566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
12509566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1251912837bbSHong Zhang 
12524222ddf1SHong Zhang   /* create symbolic parallel matrix C */
12539566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
12549566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
1255912837bbSHong Zhang 
12564222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
1257912837bbSHong Zhang 
12583cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
12599566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1260912837bbSHong Zhang 
1261912837bbSHong Zhang   /* (0) compute Rd = Pd^T, Ro = Po^T  */
1262912837bbSHong Zhang   /* --------------------------------- */
1263acd337a6SBarry Smith   PetscCall(MatTranspose(p->A, MAT_INITIAL_MATRIX, &ptap->Rd));
1264acd337a6SBarry Smith   PetscCall(MatTranspose(p->B, MAT_INITIAL_MATRIX, &ptap->Ro));
1265912837bbSHong Zhang 
1266669e9c86SHong Zhang   /* (1) compute symbolic A_loc */
1267669e9c86SHong Zhang   /* ---------------------------*/
12689566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &ptap->A_loc));
1269912837bbSHong Zhang 
12704ede91e3SHong Zhang   /* (2-1) compute symbolic C_oth = Ro*A_loc  */
1271912837bbSHong Zhang   /* ------------------------------------ */
12729566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
12739566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Ro, prefix));
12749566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Ro, "inner_offdiag_"));
12759566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_oth));
12769566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro, ptap->A_loc, fill, ptap->C_oth));
1277912837bbSHong Zhang 
1278912837bbSHong Zhang   /* (3) send coj of C_oth to other processors  */
1279912837bbSHong Zhang   /* ------------------------------------------ */
1280912837bbSHong Zhang   /* determine row ownership */
12819566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &rowmap));
1282912837bbSHong Zhang   rowmap->n  = pn;
1283912837bbSHong Zhang   rowmap->bs = 1;
12849566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rowmap));
1285912837bbSHong Zhang   owners = rowmap->range;
1286912837bbSHong Zhang 
1287912837bbSHong Zhang   /* determine the number of messages to send, their lengths */
12889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(size, &len_s, size, &len_si, size, &sstatus, size + 2, &owners_co));
12899566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_s, size));
12909566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_si, size));
1291912837bbSHong Zhang 
1292912837bbSHong Zhang   c_oth = (Mat_SeqAIJ *)ptap->C_oth->data;
12939371c9d4SSatish Balay   coi   = c_oth->i;
12949371c9d4SSatish Balay   coj   = c_oth->j;
1295912837bbSHong Zhang   con   = ptap->C_oth->rmap->n;
1296912837bbSHong Zhang   proc  = 0;
1297912837bbSHong Zhang   for (i = 0; i < con; i++) {
1298912837bbSHong Zhang     while (prmap[i] >= owners[proc + 1]) proc++;
12997f3e1f30SHong Zhang     len_si[proc]++;                     /* num of rows in Co(=Pt*A) to be sent to [proc] */
1300912837bbSHong Zhang     len_s[proc] += coi[i + 1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */
1301912837bbSHong Zhang   }
1302912837bbSHong Zhang 
1303912837bbSHong Zhang   len          = 0; /* max length of buf_si[], see (4) */
1304912837bbSHong Zhang   owners_co[0] = 0;
1305912837bbSHong Zhang   nsend        = 0;
1306912837bbSHong Zhang   for (proc = 0; proc < size; proc++) {
1307912837bbSHong Zhang     owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1308912837bbSHong Zhang     if (len_s[proc]) {
1309912837bbSHong Zhang       nsend++;
1310912837bbSHong Zhang       len_si[proc] = 2 * (len_si[proc] + 1); /* length of buf_si to be sent to [proc] */
1311912837bbSHong Zhang       len += len_si[proc];
1312912837bbSHong Zhang     }
1313912837bbSHong Zhang   }
1314912837bbSHong Zhang 
1315912837bbSHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
13169566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &nrecv));
13179566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, nsend, nrecv, len_s, len_si, &id_r, &len_r, &len_ri));
1318912837bbSHong Zhang 
1319912837bbSHong Zhang   /* post the Irecv and Isend of coj */
13209566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
13219566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, nrecv, id_r, len_r, &buf_rj, &rwaits));
13229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend + 1, &swaits));
1323912837bbSHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1324912837bbSHong Zhang     if (!len_s[proc]) continue;
1325912837bbSHong Zhang     i = owners_co[proc];
13269566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1327912837bbSHong Zhang     k++;
1328912837bbSHong Zhang   }
1329912837bbSHong Zhang 
13307f3e1f30SHong Zhang   /* (2-2) compute symbolic C_loc = Rd*A_loc */
1331912837bbSHong Zhang   /* ---------------------------------------- */
13329566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Rd, prefix));
13339566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Rd, "inner_diag_"));
13349566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_loc));
13359566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd, ptap->A_loc, fill, ptap->C_loc));
1336912837bbSHong Zhang   c_loc = (Mat_SeqAIJ *)ptap->C_loc->data;
1337912837bbSHong Zhang 
1338912837bbSHong Zhang   /* receives coj are complete */
1339*48a46eb9SPierre Jolivet   for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
13409566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
13419566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1342912837bbSHong Zhang 
1343912837bbSHong Zhang   /* add received column indices into ta to update Crmax */
13444ede91e3SHong Zhang   a_loc = (Mat_SeqAIJ *)(ptap->A_loc)->data;
1345669e9c86SHong Zhang 
1346669e9c86SHong Zhang   /* create and initialize a linked list */
13479566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(an, aN, &ta)); /* for compute Crmax */
13484ede91e3SHong Zhang   MatRowMergeMax_SeqAIJ(a_loc, ptap->A_loc->rmap->N, ta);
1349669e9c86SHong Zhang 
1350912837bbSHong Zhang   for (k = 0; k < nrecv; k++) { /* k-th received message */
1351912837bbSHong Zhang     Jptr = buf_rj[k];
1352*48a46eb9SPierre Jolivet     for (j = 0; j < len_r[k]; j++) PetscCall(PetscTableAdd(ta, *(Jptr + j) + 1, 1, INSERT_VALUES));
1353912837bbSHong Zhang   }
13549566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta, &Crmax));
13559566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&ta));
1356912837bbSHong Zhang 
1357912837bbSHong Zhang   /* (4) send and recv coi */
1358912837bbSHong Zhang   /*-----------------------*/
13599566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
13609566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, nrecv, id_r, len_ri, &buf_ri, &rwaits));
13619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
1362912837bbSHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1363912837bbSHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1364912837bbSHong Zhang     if (!len_s[proc]) continue;
1365912837bbSHong Zhang     /* form outgoing message for i-structure:
1366912837bbSHong Zhang          buf_si[0]:                 nrows to be sent
1367912837bbSHong Zhang                [1:nrows]:           row index (global)
1368912837bbSHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1369912837bbSHong Zhang     */
1370912837bbSHong Zhang     /*-------------------------------------------*/
1371912837bbSHong Zhang     nrows       = len_si[proc] / 2 - 1; /* num of rows in Co to be sent to [proc] */
1372912837bbSHong Zhang     buf_si_i    = buf_si + nrows + 1;
1373912837bbSHong Zhang     buf_si[0]   = nrows;
1374912837bbSHong Zhang     buf_si_i[0] = 0;
1375912837bbSHong Zhang     nrows       = 0;
1376912837bbSHong Zhang     for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1377912837bbSHong Zhang       nzi                 = coi[i + 1] - coi[i];
1378912837bbSHong Zhang       buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi;   /* i-structure */
1379912837bbSHong Zhang       buf_si[nrows + 1]   = prmap[i] - owners[proc]; /* local row index */
1380912837bbSHong Zhang       nrows++;
1381912837bbSHong Zhang     }
13829566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1383912837bbSHong Zhang     k++;
1384912837bbSHong Zhang     buf_si += len_si[proc];
1385912837bbSHong Zhang   }
1386*48a46eb9SPierre Jolivet   for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
13879566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
13889566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1389912837bbSHong Zhang 
13909566063dSJacob Faibussowitsch   PetscCall(PetscFree4(len_s, len_si, sstatus, owners_co));
13919566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
13929566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
13939566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1394912837bbSHong Zhang 
13954222ddf1SHong Zhang   /* (5) compute the local portion of C      */
1396912837bbSHong Zhang   /* ------------------------------------------ */
13974222ddf1SHong Zhang   /* set initial free space to be Crmax, sufficient for holding nozeros in each row of C */
13989566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(Crmax, &free_space));
1399912837bbSHong Zhang   current_space = free_space;
1400912837bbSHong Zhang 
14019566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(nrecv, &buf_ri_k, nrecv, &nextrow, nrecv, &nextci));
1402912837bbSHong Zhang   for (k = 0; k < nrecv; k++) {
1403912837bbSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1404912837bbSHong Zhang     nrows       = *buf_ri_k[k];
1405912837bbSHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
1406a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1407912837bbSHong Zhang   }
1408912837bbSHong Zhang 
1409d0609cedSBarry Smith   MatPreallocateBegin(comm, pn, an, dnz, onz);
14109566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(Crmax, aN, &lnk, &lnkbt));
14118c78258cSHong Zhang   for (i = 0; i < pn; i++) { /* for each local row of C */
14124222ddf1SHong Zhang     /* add C_loc into C */
1413912837bbSHong Zhang     nzi  = c_loc->i[i + 1] - c_loc->i[i];
1414912837bbSHong Zhang     Jptr = c_loc->j + c_loc->i[i];
14159566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
1416912837bbSHong Zhang 
1417912837bbSHong Zhang     /* add received col data into lnk */
1418912837bbSHong Zhang     for (k = 0; k < nrecv; k++) { /* k-th received message */
1419912837bbSHong Zhang       if (i == *nextrow[k]) {     /* i-th row */
1420912837bbSHong Zhang         nzi  = *(nextci[k] + 1) - *nextci[k];
1421912837bbSHong Zhang         Jptr = buf_rj[k] + *nextci[k];
14229566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
14239371c9d4SSatish Balay         nextrow[k]++;
14249371c9d4SSatish Balay         nextci[k]++;
1425912837bbSHong Zhang       }
1426912837bbSHong Zhang     }
14278c78258cSHong Zhang 
14288c78258cSHong Zhang     /* add missing diagonal entry */
14298c78258cSHong Zhang     if (C->force_diagonals) {
14308c78258cSHong Zhang       k = i + owners[rank]; /* column index */
14319566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1, &k, lnk, lnkbt));
14328c78258cSHong Zhang     }
14338c78258cSHong Zhang 
1434912837bbSHong Zhang     nzi = lnk[0];
1435912837bbSHong Zhang 
1436912837bbSHong Zhang     /* copy data into free space, then initialize lnk */
14379566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(aN, nzi, current_space->array, lnk, lnkbt));
14389566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], nzi, current_space->array, dnz, onz));
1439912837bbSHong Zhang   }
14409566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
14419566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
14429566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceDestroy(free_space));
1443912837bbSHong Zhang 
1444912837bbSHong Zhang   /* local sizes and preallocation */
14459566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, pn, an, PETSC_DETERMINE, PETSC_DETERMINE));
14469566063dSJacob Faibussowitsch   if (P->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->rmap, P->cmap->bs));
14479566063dSJacob Faibussowitsch   if (A->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->cmap, A->cmap->bs));
14489566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1449d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
1450912837bbSHong Zhang 
145169be949aSStefano Zampini   /* add C_loc and C_oth to C */
14529566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C, &rstart, NULL));
145369be949aSStefano Zampini   for (i = 0; i < pn; i++) {
14548c78258cSHong Zhang     ncols = c_loc->i[i + 1] - c_loc->i[i];
14558c78258cSHong Zhang     cols  = c_loc->j + c_loc->i[i];
14568c78258cSHong Zhang     row   = rstart + i;
14579566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
14588c78258cSHong Zhang 
1459*48a46eb9SPierre Jolivet     if (C->force_diagonals) PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, 1, (const PetscInt *)&row, NULL, INSERT_VALUES));
146069be949aSStefano Zampini   }
146169be949aSStefano Zampini   for (i = 0; i < con; i++) {
14628c78258cSHong Zhang     ncols = c_oth->i[i + 1] - c_oth->i[i];
14638c78258cSHong Zhang     cols  = c_oth->j + c_oth->i[i];
14648c78258cSHong Zhang     row   = prmap[i];
14659566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
146669be949aSStefano Zampini   }
14679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
14689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
14699566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
147069be949aSStefano Zampini 
1471912837bbSHong Zhang   /* members in merge */
14729566063dSJacob Faibussowitsch   PetscCall(PetscFree(id_r));
14739566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_r));
14749566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri[0]));
14759566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri));
14769566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj[0]));
14779566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj));
14789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rowmap));
1479912837bbSHong Zhang 
14804222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
14816718818eSStefano Zampini   C->product->data    = ptap;
14826718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
1483912837bbSHong Zhang   PetscFunctionReturn(0);
1484912837bbSHong Zhang }
1485912837bbSHong Zhang 
14869371c9d4SSatish Balay PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, Mat C) {
14876718818eSStefano Zampini   Mat_MPIAIJ        *p = (Mat_MPIAIJ *)P->data;
1488669e9c86SHong Zhang   Mat_SeqAIJ        *c_seq;
14896718818eSStefano Zampini   Mat_APMPI         *ptap;
1490669e9c86SHong Zhang   Mat                A_loc, C_loc, C_oth;
1491912837bbSHong Zhang   PetscInt           i, rstart, rend, cm, ncols, row;
1492912837bbSHong Zhang   const PetscInt    *cols;
1493912837bbSHong Zhang   const PetscScalar *vals;
1494912837bbSHong Zhang 
1495912837bbSHong Zhang   PetscFunctionBegin;
14966718818eSStefano Zampini   MatCheckProduct(C, 3);
14976718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
149828b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
149928b400f6SJacob Faibussowitsch   PetscCheck(ptap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
15009566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(C));
1501912837bbSHong Zhang 
1502669e9c86SHong Zhang   /* These matrices are obtained in MatTransposeMatMultSymbolic() */
1503669e9c86SHong Zhang   /* 1) get R = Pd^T, Ro = Po^T */
1504669e9c86SHong Zhang   /*----------------------------*/
15051cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(p->A, ptap->Rd));
1506acd337a6SBarry Smith   PetscCall(MatTranspose(p->A, MAT_REUSE_MATRIX, &ptap->Rd));
15071cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(p->B, ptap->Ro));
1508acd337a6SBarry Smith   PetscCall(MatTranspose(p->B, MAT_REUSE_MATRIX, &ptap->Ro));
1509669e9c86SHong Zhang 
1510669e9c86SHong Zhang   /* 2) compute numeric A_loc */
1511669e9c86SHong Zhang   /*--------------------------*/
15129566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &ptap->A_loc));
1513912837bbSHong Zhang 
1514669e9c86SHong Zhang   /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */
15154ede91e3SHong Zhang   A_loc = ptap->A_loc;
15169566063dSJacob Faibussowitsch   PetscCall(((ptap->C_loc)->ops->matmultnumeric)(ptap->Rd, A_loc, ptap->C_loc));
15179566063dSJacob Faibussowitsch   PetscCall(((ptap->C_oth)->ops->matmultnumeric)(ptap->Ro, A_loc, ptap->C_oth));
1518912837bbSHong Zhang   C_loc = ptap->C_loc;
1519912837bbSHong Zhang   C_oth = ptap->C_oth;
1520912837bbSHong Zhang 
152169be949aSStefano Zampini   /* add C_loc and C_oth to C */
15229566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C, &rstart, &rend));
1523912837bbSHong Zhang 
1524912837bbSHong Zhang   /* C_loc -> C */
1525912837bbSHong Zhang   cm    = C_loc->rmap->N;
1526912837bbSHong Zhang   c_seq = (Mat_SeqAIJ *)C_loc->data;
1527912837bbSHong Zhang   cols  = c_seq->j;
1528912837bbSHong Zhang   vals  = c_seq->a;
1529912837bbSHong Zhang   for (i = 0; i < cm; i++) {
1530912837bbSHong Zhang     ncols = c_seq->i[i + 1] - c_seq->i[i];
1531912837bbSHong Zhang     row   = rstart + i;
15329566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15339371c9d4SSatish Balay     cols += ncols;
15349371c9d4SSatish Balay     vals += ncols;
1535912837bbSHong Zhang   }
1536912837bbSHong Zhang 
1537912837bbSHong Zhang   /* Co -> C, off-processor part */
1538912837bbSHong Zhang   cm    = C_oth->rmap->N;
1539912837bbSHong Zhang   c_seq = (Mat_SeqAIJ *)C_oth->data;
1540912837bbSHong Zhang   cols  = c_seq->j;
1541912837bbSHong Zhang   vals  = c_seq->a;
1542912837bbSHong Zhang   for (i = 0; i < cm; i++) {
1543912837bbSHong Zhang     ncols = c_seq->i[i + 1] - c_seq->i[i];
1544912837bbSHong Zhang     row   = p->garray[i];
15459566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15469371c9d4SSatish Balay     cols += ncols;
15479371c9d4SSatish Balay     vals += ncols;
1548912837bbSHong Zhang   }
15499566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
15509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
15519566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
1552912837bbSHong Zhang   PetscFunctionReturn(0);
1553912837bbSHong Zhang }
1554912837bbSHong Zhang 
15559371c9d4SSatish Balay PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P, Mat A, Mat C) {
1556d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
15576718818eSStefano Zampini   Mat_MPIAIJ          *p  = (Mat_MPIAIJ *)P->data;
1558d6ab1dc0SHong Zhang   Mat_SeqAIJ          *pd = (Mat_SeqAIJ *)(p->A)->data, *po = (Mat_SeqAIJ *)(p->B)->data;
15591cdffd5eSHong Zhang   Mat_APMPI           *ap;
1560e745005bSHong Zhang   PetscInt            *adj;
1561e745005bSHong Zhang   PetscInt             i, j, k, anz, pnz, row, *cj, nexta;
1562e745005bSHong Zhang   MatScalar           *ada, *ca, valtmp;
1563d6ab1dc0SHong Zhang   PetscInt             am = A->rmap->n, cm = C->rmap->n, pon = (p->B)->cmap->n;
1564ce94432eSBarry Smith   MPI_Comm             comm;
1565d6ab1dc0SHong Zhang   PetscMPIInt          size, rank, taga, *len_s;
1566d6ab1dc0SHong Zhang   PetscInt            *owners, proc, nrows, **buf_ri_k, **nextrow, **nextci;
1567d6ab1dc0SHong Zhang   PetscInt           **buf_ri, **buf_rj;
1568d6ab1dc0SHong Zhang   PetscInt             cnz = 0, *bj_i, *bi, *bj, bnz, nextcj; /* bi,bj,ba: local array of C(mpi mat) */
1569d6ab1dc0SHong Zhang   MPI_Request         *s_waits, *r_waits;
1570d6ab1dc0SHong Zhang   MPI_Status          *status;
1571d6ab1dc0SHong Zhang   MatScalar          **abuf_r, *ba_i, *pA, *coa, *ba;
1572ce496241SStefano Zampini   const PetscScalar   *dummy;
15734e201bd7SHong Zhang   PetscInt            *ai, *aj, *coi, *coj, *poJ, *pdJ;
1574d6ab1dc0SHong Zhang   Mat                  A_loc;
1575d6ab1dc0SHong Zhang   Mat_SeqAIJ          *a_loc;
1576d6ab1dc0SHong Zhang 
1577d6ab1dc0SHong Zhang   PetscFunctionBegin;
15786718818eSStefano Zampini   MatCheckProduct(C, 3);
15791cdffd5eSHong Zhang   ap = (Mat_APMPI *)C->product->data;
15801cdffd5eSHong Zhang   PetscCheck(ap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be computed. Missing data");
15811cdffd5eSHong Zhang   PetscCheck(ap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
15829566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
15839566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
15849566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1585d6ab1dc0SHong Zhang 
15861cdffd5eSHong Zhang   merge = ap->merge;
1587d6ab1dc0SHong Zhang 
1588e745005bSHong Zhang   /* 2) compute numeric C_seq = P_loc^T*A_loc */
1589e745005bSHong Zhang   /*------------------------------------------*/
1590d6ab1dc0SHong Zhang   /* get data from symbolic products */
15919371c9d4SSatish Balay   coi = merge->coi;
15929371c9d4SSatish Balay   coj = merge->coj;
15939566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(coi[pon] + 1, &coa));
15949371c9d4SSatish Balay   bi     = merge->bi;
15959371c9d4SSatish Balay   bj     = merge->bj;
1596d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
15979566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bi[cm] + 1, &ba));
1598d6ab1dc0SHong Zhang 
1599d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
16001cdffd5eSHong Zhang   A_loc = ap->A_loc;
16019566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &A_loc));
1602d6ab1dc0SHong Zhang   a_loc = (Mat_SeqAIJ *)(A_loc)->data;
1603d6ab1dc0SHong Zhang   ai    = a_loc->i;
1604d6ab1dc0SHong Zhang   aj    = a_loc->j;
1605d6ab1dc0SHong Zhang 
1606ce496241SStefano Zampini   /* trigger copy to CPU */
16079566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &dummy));
16089566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &dummy));
16099566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &dummy));
16109566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &dummy));
1611d6ab1dc0SHong Zhang   for (i = 0; i < am; i++) {
1612d6ab1dc0SHong Zhang     anz = ai[i + 1] - ai[i];
1613d6ab1dc0SHong Zhang     adj = aj + ai[i];
1614d6ab1dc0SHong Zhang     ada = a_loc->a + ai[i];
1615d6ab1dc0SHong Zhang 
1616d6ab1dc0SHong Zhang     /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */
1617e745005bSHong Zhang     /*-------------------------------------------------------------*/
1618d6ab1dc0SHong Zhang     /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */
1619d6ab1dc0SHong Zhang     pnz = po->i[i + 1] - po->i[i];
1620d6ab1dc0SHong Zhang     poJ = po->j + po->i[i];
1621d6ab1dc0SHong Zhang     pA  = po->a + po->i[i];
1622d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1623d6ab1dc0SHong Zhang       row    = poJ[j];
1624d6ab1dc0SHong Zhang       cj     = coj + coi[row];
1625d6ab1dc0SHong Zhang       ca     = coa + coi[row];
1626e745005bSHong Zhang       /* perform sparse axpy */
1627e745005bSHong Zhang       nexta  = 0;
1628d6ab1dc0SHong Zhang       valtmp = pA[j];
1629e745005bSHong Zhang       for (k = 0; nexta < anz; k++) {
1630e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1631e745005bSHong Zhang           ca[k] += valtmp * ada[nexta];
1632e745005bSHong Zhang           nexta++;
1633d6ab1dc0SHong Zhang         }
1634e745005bSHong Zhang       }
16359566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * anz));
1636d6ab1dc0SHong Zhang     }
1637d6ab1dc0SHong Zhang 
1638d6ab1dc0SHong Zhang     /* put the value into Cd (diagonal part) */
1639d6ab1dc0SHong Zhang     pnz = pd->i[i + 1] - pd->i[i];
1640d6ab1dc0SHong Zhang     pdJ = pd->j + pd->i[i];
1641d6ab1dc0SHong Zhang     pA  = pd->a + pd->i[i];
1642d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1643d6ab1dc0SHong Zhang       row    = pdJ[j];
1644d6ab1dc0SHong Zhang       cj     = bj + bi[row];
1645d6ab1dc0SHong Zhang       ca     = ba + bi[row];
1646e745005bSHong Zhang       /* perform sparse axpy */
1647e745005bSHong Zhang       nexta  = 0;
1648d6ab1dc0SHong Zhang       valtmp = pA[j];
1649e745005bSHong Zhang       for (k = 0; nexta < anz; k++) {
1650e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1651e745005bSHong Zhang           ca[k] += valtmp * ada[nexta];
1652e745005bSHong Zhang           nexta++;
1653d6ab1dc0SHong Zhang         }
1654e745005bSHong Zhang       }
16559566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * anz));
1656d6ab1dc0SHong Zhang     }
1657d6ab1dc0SHong Zhang   }
1658d6ab1dc0SHong Zhang 
1659d6ab1dc0SHong Zhang   /* 3) send and recv matrix values coa */
1660d6ab1dc0SHong Zhang   /*------------------------------------*/
1661d6ab1dc0SHong Zhang   buf_ri = merge->buf_ri;
1662d6ab1dc0SHong Zhang   buf_rj = merge->buf_rj;
1663d6ab1dc0SHong Zhang   len_s  = merge->len_s;
16649566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &taga));
16659566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
1666d6ab1dc0SHong Zhang 
16679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend + 1, &s_waits, size, &status));
1668d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1669d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1670d6ab1dc0SHong Zhang     i = merge->owners_co[proc];
16719566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coa + coi[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
1672d6ab1dc0SHong Zhang     k++;
1673d6ab1dc0SHong Zhang   }
16749566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
16759566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
1676d6ab1dc0SHong Zhang 
16779566063dSJacob Faibussowitsch   PetscCall(PetscFree2(s_waits, status));
16789566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
16799566063dSJacob Faibussowitsch   PetscCall(PetscFree(coa));
1680d6ab1dc0SHong Zhang 
1681d6ab1dc0SHong Zhang   /* 4) insert local Cseq and received values into Cmpi */
1682d6ab1dc0SHong Zhang   /*----------------------------------------------------*/
16839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1684d6ab1dc0SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
1685e745005bSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1686d6ab1dc0SHong Zhang     nrows       = *(buf_ri_k[k]);
1687d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
1688a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1689d6ab1dc0SHong Zhang   }
1690d6ab1dc0SHong Zhang 
1691d6ab1dc0SHong Zhang   for (i = 0; i < cm; i++) {
1692d6ab1dc0SHong Zhang     row  = owners[rank] + i; /* global row index of C_seq */
1693d6ab1dc0SHong Zhang     bj_i = bj + bi[i];       /* col indices of the i-th row of C */
1694d6ab1dc0SHong Zhang     ba_i = ba + bi[i];
1695d6ab1dc0SHong Zhang     bnz  = bi[i + 1] - bi[i];
1696d6ab1dc0SHong Zhang     /* add received vals into ba */
1697d6ab1dc0SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
1698d6ab1dc0SHong Zhang       /* i-th row */
1699d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {
1700d6ab1dc0SHong Zhang         cnz    = *(nextci[k] + 1) - *nextci[k];
1701d6ab1dc0SHong Zhang         cj     = buf_rj[k] + *(nextci[k]);
1702d6ab1dc0SHong Zhang         ca     = abuf_r[k] + *(nextci[k]);
1703d6ab1dc0SHong Zhang         nextcj = 0;
1704d6ab1dc0SHong Zhang         for (j = 0; nextcj < cnz; j++) {
1705d6ab1dc0SHong Zhang           if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */
1706d6ab1dc0SHong Zhang             ba_i[j] += ca[nextcj++];
1707d6ab1dc0SHong Zhang           }
1708d6ab1dc0SHong Zhang         }
17099371c9d4SSatish Balay         nextrow[k]++;
17109371c9d4SSatish Balay         nextci[k]++;
17119566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * cnz));
1712d6ab1dc0SHong Zhang       }
1713d6ab1dc0SHong Zhang     }
17149566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, bnz, bj_i, ba_i, INSERT_VALUES));
1715d6ab1dc0SHong Zhang   }
17169566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
17179566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
1718d6ab1dc0SHong Zhang 
17199566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba));
17209566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
17219566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
17229566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
1723d6ab1dc0SHong Zhang   PetscFunctionReturn(0);
1724d6ab1dc0SHong Zhang }
1725d6ab1dc0SHong Zhang 
17269371c9d4SSatish Balay PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P, Mat A, PetscReal fill, Mat C) {
1727b419842dSStefano Zampini   Mat                  A_loc;
17281cdffd5eSHong Zhang   Mat_APMPI           *ap;
17290298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
17306718818eSStefano Zampini   Mat_MPIAIJ          *p = (Mat_MPIAIJ *)P->data, *a = (Mat_MPIAIJ *)A->data;
1731d6ab1dc0SHong Zhang   PetscInt            *pdti, *pdtj, *poti, *potj, *ptJ;
1732d6ab1dc0SHong Zhang   PetscInt             nnz;
1733d6ab1dc0SHong Zhang   PetscInt            *lnk, *owners_co, *coi, *coj, i, k, pnz, row;
1734d6ab1dc0SHong Zhang   PetscInt             am = A->rmap->n, pn = P->cmap->n;
1735ce94432eSBarry Smith   MPI_Comm             comm;
1736d6ab1dc0SHong Zhang   PetscMPIInt          size, rank, tagi, tagj, *len_si, *len_s, *len_ri;
1737d6ab1dc0SHong Zhang   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
1738d6ab1dc0SHong Zhang   PetscInt             len, proc, *dnz, *onz, *owners;
1739d6ab1dc0SHong Zhang   PetscInt             nzi, *bi, *bj;
1740d6ab1dc0SHong Zhang   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1741d6ab1dc0SHong Zhang   MPI_Request         *swaits, *rwaits;
1742d6ab1dc0SHong Zhang   MPI_Status          *sstatus, rstatus;
1743d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
1744d6ab1dc0SHong Zhang   PetscInt            *ai, *aj, *Jptr, anz, *prmap = p->garray, pon, nspacedouble = 0, j;
1745d6ab1dc0SHong Zhang   PetscReal            afill  = 1.0, afill_tmp;
17464b38b95cSHong Zhang   PetscInt             rstart = P->cmap->rstart, rmax, aN = A->cmap->N, Armax;
1747b419842dSStefano Zampini   Mat_SeqAIJ          *a_loc;
17480acc65b4SHong Zhang   PetscTable           ta;
1749b92f168fSBarry Smith   MatType              mtype;
1750d6ab1dc0SHong Zhang 
1751d6ab1dc0SHong Zhang   PetscFunctionBegin;
17529566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1753d6ab1dc0SHong Zhang   /* check if matrix local sizes are compatible */
17549371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart,
17559371c9d4SSatish Balay              A->rmap->rend, P->rmap->rstart, P->rmap->rend);
1756d6ab1dc0SHong Zhang 
17579566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
17589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1759d6ab1dc0SHong Zhang 
17603cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
17611cdffd5eSHong Zhang   PetscCall(PetscNew(&ap));
1762d6ab1dc0SHong Zhang 
1763d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
17649566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &A_loc));
17652205254eSKarl Rupp 
17661cdffd5eSHong Zhang   ap->A_loc = A_loc;
1767d6ab1dc0SHong Zhang   a_loc     = (Mat_SeqAIJ *)(A_loc)->data;
1768d6ab1dc0SHong Zhang   ai        = a_loc->i;
1769d6ab1dc0SHong Zhang   aj        = a_loc->j;
1770d6ab1dc0SHong Zhang 
1771d6ab1dc0SHong Zhang   /* determine symbolic Co=(p->B)^T*A - send to others */
1772d6ab1dc0SHong Zhang   /*----------------------------------------------------*/
17739566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
17749566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
1775d6ab1dc0SHong Zhang   pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors
1776d6ab1dc0SHong Zhang                          >= (num of nonzero rows of C_seq) - pn */
17779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pon + 1, &coi));
1778d6ab1dc0SHong Zhang   coi[0] = 0;
1779d6ab1dc0SHong Zhang 
1780d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */
1781f91af8c7SBarry Smith   nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(poti[pon], ai[am]));
17829566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1783d6ab1dc0SHong Zhang   current_space = free_space;
178419f0e57aSHong Zhang 
1785d6ab1dc0SHong Zhang   /* create and initialize a linked list */
17869566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(A->cmap->n + a->B->cmap->N, aN, &ta));
17874b38b95cSHong Zhang   MatRowMergeMax_SeqAIJ(a_loc, am, ta);
17889566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta, &Armax));
178933ba5e2fSHong Zhang 
17909566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1791d6ab1dc0SHong Zhang 
1792d6ab1dc0SHong Zhang   for (i = 0; i < pon; i++) {
1793d6ab1dc0SHong Zhang     pnz = poti[i + 1] - poti[i];
1794d6ab1dc0SHong Zhang     ptJ = potj + poti[i];
1795d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1796d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of A_loc == col of Pot */
1797d6ab1dc0SHong Zhang       anz  = ai[row + 1] - ai[row];
1798d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1799d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
18009566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1801d6ab1dc0SHong Zhang     }
1802d6ab1dc0SHong Zhang     nnz = lnk[0];
1803d6ab1dc0SHong Zhang 
1804d6ab1dc0SHong Zhang     /* If free space is not available, double the total space in the list */
1805d6ab1dc0SHong Zhang     if (current_space->local_remaining < nnz) {
18069566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), &current_space));
1807d6ab1dc0SHong Zhang       nspacedouble++;
1808d6ab1dc0SHong Zhang     }
1809d6ab1dc0SHong Zhang 
1810d6ab1dc0SHong Zhang     /* Copy data into free space, and zero out denserows */
18119566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
18122205254eSKarl Rupp 
1813d6ab1dc0SHong Zhang     current_space->array += nnz;
1814d6ab1dc0SHong Zhang     current_space->local_used += nnz;
1815d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
18162205254eSKarl Rupp 
1817d6ab1dc0SHong Zhang     coi[i + 1] = coi[i] + nnz;
1818d6ab1dc0SHong Zhang   }
1819d6ab1dc0SHong Zhang 
18209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(coi[pon] + 1, &coj));
18219566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, coj));
18229566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */
18232205254eSKarl Rupp 
1824118727c9SMark F. Adams   afill_tmp = (PetscReal)coi[pon] / (poti[pon] + ai[am] + 1);
1825d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
1826d6ab1dc0SHong Zhang 
1827d6ab1dc0SHong Zhang   /* send j-array (coj) of Co to other processors */
1828d6ab1dc0SHong Zhang   /*----------------------------------------------*/
1829d6ab1dc0SHong Zhang   /* determine row ownership */
18309566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
18319566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
18322205254eSKarl Rupp 
1833d6ab1dc0SHong Zhang   merge->rowmap->n  = pn;
1834d6ab1dc0SHong Zhang   merge->rowmap->bs = 1;
18352205254eSKarl Rupp 
18369566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
1837d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
1838d6ab1dc0SHong Zhang 
1839d6ab1dc0SHong Zhang   /* determine the number of messages to send, their lengths */
18409566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size, &len_si));
18419566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size, &merge->len_s));
18422205254eSKarl Rupp 
1843d6ab1dc0SHong Zhang   len_s        = merge->len_s;
1844d6ab1dc0SHong Zhang   merge->nsend = 0;
1845d6ab1dc0SHong Zhang 
18469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size + 2, &owners_co));
1847d6ab1dc0SHong Zhang 
1848d6ab1dc0SHong Zhang   proc = 0;
1849d6ab1dc0SHong Zhang   for (i = 0; i < pon; i++) {
1850d6ab1dc0SHong Zhang     while (prmap[i] >= owners[proc + 1]) proc++;
1851d6ab1dc0SHong Zhang     len_si[proc]++; /* num of rows in Co to be sent to [proc] */
1852d6ab1dc0SHong Zhang     len_s[proc] += coi[i + 1] - coi[i];
1853d6ab1dc0SHong Zhang   }
1854d6ab1dc0SHong Zhang 
1855d6ab1dc0SHong Zhang   len          = 0; /* max length of buf_si[] */
1856d6ab1dc0SHong Zhang   owners_co[0] = 0;
1857d6ab1dc0SHong Zhang   for (proc = 0; proc < size; proc++) {
1858d6ab1dc0SHong Zhang     owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1859d6ab1dc0SHong Zhang     if (len_si[proc]) {
1860d6ab1dc0SHong Zhang       merge->nsend++;
1861d6ab1dc0SHong Zhang       len_si[proc] = 2 * (len_si[proc] + 1);
1862d6ab1dc0SHong Zhang       len += len_si[proc];
1863d6ab1dc0SHong Zhang     }
1864d6ab1dc0SHong Zhang   }
1865d6ab1dc0SHong Zhang 
1866d6ab1dc0SHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
18679566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
18689566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
1869d6ab1dc0SHong Zhang 
1870d6ab1dc0SHong Zhang   /* post the Irecv and Isend of coj */
18719566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
18729566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rwaits));
18739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &swaits));
1874d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1875d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1876d6ab1dc0SHong Zhang     i = owners_co[proc];
18779566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1878d6ab1dc0SHong Zhang     k++;
1879d6ab1dc0SHong Zhang   }
1880d6ab1dc0SHong Zhang 
1881d6ab1dc0SHong Zhang   /* receives and sends of coj are complete */
18829566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &sstatus));
1883d6ab1dc0SHong Zhang   for (i = 0; i < merge->nrecv; i++) {
1884ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
18859566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1886d6ab1dc0SHong Zhang   }
18879566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
18889566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
1889d6ab1dc0SHong Zhang 
18900acc65b4SHong Zhang   /* add received column indices into table to update Armax */
1891c4762a1bSJed Brown   /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */
18920acc65b4SHong Zhang   for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
18930acc65b4SHong Zhang     Jptr = buf_rj[k];
1894*48a46eb9SPierre Jolivet     for (j = 0; j < merge->len_r[k]; j++) PetscCall(PetscTableAdd(ta, *(Jptr + j) + 1, 1, INSERT_VALUES));
18950acc65b4SHong Zhang   }
18969566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta, &Armax));
18970acc65b4SHong Zhang 
1898d6ab1dc0SHong Zhang   /* send and recv coi */
1899d6ab1dc0SHong Zhang   /*-------------------*/
19009566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
19019566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &rwaits));
19029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
1903d6ab1dc0SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1904d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1905d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1906d6ab1dc0SHong Zhang     /* form outgoing message for i-structure:
1907d6ab1dc0SHong Zhang          buf_si[0]:                 nrows to be sent
1908d6ab1dc0SHong Zhang                [1:nrows]:           row index (global)
1909d6ab1dc0SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1910d6ab1dc0SHong Zhang     */
1911d6ab1dc0SHong Zhang     /*-------------------------------------------*/
1912d6ab1dc0SHong Zhang     nrows       = len_si[proc] / 2 - 1;
1913d6ab1dc0SHong Zhang     buf_si_i    = buf_si + nrows + 1;
1914d6ab1dc0SHong Zhang     buf_si[0]   = nrows;
1915d6ab1dc0SHong Zhang     buf_si_i[0] = 0;
1916d6ab1dc0SHong Zhang     nrows       = 0;
1917d6ab1dc0SHong Zhang     for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1918d6ab1dc0SHong Zhang       nzi                 = coi[i + 1] - coi[i];
1919d6ab1dc0SHong Zhang       buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi;   /* i-structure */
1920d6ab1dc0SHong Zhang       buf_si[nrows + 1]   = prmap[i] - owners[proc]; /* local row index */
1921d6ab1dc0SHong Zhang       nrows++;
1922d6ab1dc0SHong Zhang     }
19239566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1924d6ab1dc0SHong Zhang     k++;
1925d6ab1dc0SHong Zhang     buf_si += len_si[proc];
1926d6ab1dc0SHong Zhang   }
1927d6ab1dc0SHong Zhang   i = merge->nrecv;
1928d6ab1dc0SHong Zhang   while (i--) {
1929ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
19309566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1931d6ab1dc0SHong Zhang   }
19329566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19339566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
19349566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
19359566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
19369566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
19379566063dSJacob Faibussowitsch   PetscCall(PetscFree(sstatus));
19389566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1939d6ab1dc0SHong Zhang 
1940d6ab1dc0SHong Zhang   /* compute the local portion of C (mpi mat) */
1941d6ab1dc0SHong Zhang   /*------------------------------------------*/
1942d6ab1dc0SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
19439566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pn + 1, &bi));
1944d6ab1dc0SHong Zhang   bi[0] = 0;
1945d6ab1dc0SHong Zhang 
1946d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(P) + nnz(AP)) */
1947f91af8c7SBarry Smith   nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(pdti[pn], PetscIntSumTruncate(poti[pon], ai[am])));
19489566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1949d6ab1dc0SHong Zhang   current_space = free_space;
1950d6ab1dc0SHong Zhang 
19519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1952d6ab1dc0SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
1953d6ab1dc0SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1954d6ab1dc0SHong Zhang     nrows       = *buf_ri_k[k];
1955d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
19562d4ee042Sprj-     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure  */
1957d6ab1dc0SHong Zhang   }
1958d6ab1dc0SHong Zhang 
19599566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1960d0609cedSBarry Smith   MatPreallocateBegin(comm, pn, A->cmap->n, dnz, onz);
1961d6ab1dc0SHong Zhang   rmax = 0;
1962d6ab1dc0SHong Zhang   for (i = 0; i < pn; i++) {
1963d6ab1dc0SHong Zhang     /* add pdt[i,:]*AP into lnk */
1964d6ab1dc0SHong Zhang     pnz = pdti[i + 1] - pdti[i];
1965d6ab1dc0SHong Zhang     ptJ = pdtj + pdti[i];
1966d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1967d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of AP == col of Pt */
1968d6ab1dc0SHong Zhang       anz  = ai[row + 1] - ai[row];
1969d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1970d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
19719566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1972d6ab1dc0SHong Zhang     }
1973d6ab1dc0SHong Zhang 
1974d6ab1dc0SHong Zhang     /* add received col data into lnk */
1975d6ab1dc0SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
1976d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
1977d6ab1dc0SHong Zhang         nzi  = *(nextci[k] + 1) - *nextci[k];
1978d6ab1dc0SHong Zhang         Jptr = buf_rj[k] + *nextci[k];
19799566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted_Scalable(nzi, Jptr, lnk));
19809371c9d4SSatish Balay         nextrow[k]++;
19819371c9d4SSatish Balay         nextci[k]++;
1982d6ab1dc0SHong Zhang       }
1983d6ab1dc0SHong Zhang     }
19848c78258cSHong Zhang 
19858c78258cSHong Zhang     /* add missing diagonal entry */
19868c78258cSHong Zhang     if (C->force_diagonals) {
19878c78258cSHong Zhang       k = i + owners[rank]; /* column index */
19889566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1, &k, lnk));
19898c78258cSHong Zhang     }
19908c78258cSHong Zhang 
1991d6ab1dc0SHong Zhang     nnz = lnk[0];
1992d6ab1dc0SHong Zhang 
1993d6ab1dc0SHong Zhang     /* if free space is not available, make more free space */
1994d6ab1dc0SHong Zhang     if (current_space->local_remaining < nnz) {
19959566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), &current_space));
1996d6ab1dc0SHong Zhang       nspacedouble++;
1997d6ab1dc0SHong Zhang     }
1998d6ab1dc0SHong Zhang     /* copy data into free space, then initialize lnk */
19999566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
20009566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], nnz, current_space->array, dnz, onz));
20012205254eSKarl Rupp 
2002d6ab1dc0SHong Zhang     current_space->array += nnz;
2003d6ab1dc0SHong Zhang     current_space->local_used += nnz;
2004d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
20052205254eSKarl Rupp 
2006d6ab1dc0SHong Zhang     bi[i + 1] = bi[i] + nnz;
2007d6ab1dc0SHong Zhang     if (nnz > rmax) rmax = nnz;
2008d6ab1dc0SHong Zhang   }
20099566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
2010d6ab1dc0SHong Zhang 
20119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[pn] + 1, &bj));
20129566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
2013118727c9SMark F. Adams   afill_tmp = (PetscReal)bi[pn] / (pdti[pn] + poti[pon] + ai[am] + 1);
2014d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
20159566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
20169566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&ta));
20179566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
20189566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
2019d6ab1dc0SHong Zhang 
20204222ddf1SHong Zhang   /* create symbolic parallel matrix C - why cannot be assembled in Numeric part   */
20214222ddf1SHong Zhang   /*-------------------------------------------------------------------------------*/
20229566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, pn, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE));
20239566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(C, PetscAbs(P->cmap->bs), PetscAbs(A->cmap->bs)));
20249566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
20259566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
20269566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
2027d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
20289566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(C, 1));
20299566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
2030d6ab1dc0SHong Zhang   for (i = 0; i < pn; i++) {
2031d6ab1dc0SHong Zhang     row  = i + rstart;
2032d6ab1dc0SHong Zhang     nnz  = bi[i + 1] - bi[i];
2033d6ab1dc0SHong Zhang     Jptr = bj + bi[i];
20349566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, nnz, Jptr, NULL, INSERT_VALUES));
2035d6ab1dc0SHong Zhang   }
20369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
20379566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
20389566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
2039d6ab1dc0SHong Zhang   merge->bi        = bi;
2040d6ab1dc0SHong Zhang   merge->bj        = bj;
2041d6ab1dc0SHong Zhang   merge->coi       = coi;
2042d6ab1dc0SHong Zhang   merge->coj       = coj;
2043d6ab1dc0SHong Zhang   merge->buf_ri    = buf_ri;
2044d6ab1dc0SHong Zhang   merge->buf_rj    = buf_rj;
2045d6ab1dc0SHong Zhang   merge->owners_co = owners_co;
2046d6ab1dc0SHong Zhang 
20474222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
20481cdffd5eSHong Zhang   C->product->data    = ap;
20496718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
20501cdffd5eSHong Zhang   ap->merge           = merge;
2051a560ef98SHong Zhang 
20524222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ;
2053f96d37fcSHong Zhang 
2054f96d37fcSHong Zhang #if defined(PETSC_USE_INFO)
2055f96d37fcSHong Zhang   if (bi[pn] != 0) {
20569566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
20579566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n", (double)afill));
2058f96d37fcSHong Zhang   } else {
20599566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
2060f96d37fcSHong Zhang   }
2061f96d37fcSHong Zhang #endif
2062f96d37fcSHong Zhang   PetscFunctionReturn(0);
2063f96d37fcSHong Zhang }
20644222ddf1SHong Zhang 
20654222ddf1SHong Zhang /* ---------------------------------------------------------------- */
20669371c9d4SSatish Balay static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C) {
20674222ddf1SHong Zhang   Mat_Product *product = C->product;
20684222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
20694222ddf1SHong Zhang   PetscReal    fill = product->fill;
20704222ddf1SHong Zhang   PetscBool    flg;
20714222ddf1SHong Zhang 
20724222ddf1SHong Zhang   PetscFunctionBegin;
20734222ddf1SHong Zhang   /* scalable */
20749566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "scalable", &flg));
20754222ddf1SHong Zhang   if (flg) {
20769566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
20774222ddf1SHong Zhang     goto next;
20784222ddf1SHong Zhang   }
20794222ddf1SHong Zhang 
20804222ddf1SHong Zhang   /* nonscalable */
20819566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "nonscalable", &flg));
20824222ddf1SHong Zhang   if (flg) {
20839566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
20844222ddf1SHong Zhang     goto next;
20854222ddf1SHong Zhang   }
20864222ddf1SHong Zhang 
20874222ddf1SHong Zhang   /* matmatmult */
20889566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "at*b", &flg));
20894222ddf1SHong Zhang   if (flg) {
20904222ddf1SHong Zhang     Mat        At;
20914222ddf1SHong Zhang     Mat_APMPI *ptap;
20924222ddf1SHong Zhang 
20939566063dSJacob Faibussowitsch     PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
20949566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At, B, fill, C));
20956718818eSStefano Zampini     ptap = (Mat_APMPI *)C->product->data;
20964222ddf1SHong Zhang     if (ptap) {
20974222ddf1SHong Zhang       ptap->Pt            = At;
20986718818eSStefano Zampini       C->product->destroy = MatDestroy_MPIAIJ_PtAP;
20994222ddf1SHong Zhang     }
21004222ddf1SHong Zhang     C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult;
21014222ddf1SHong Zhang     goto next;
21024222ddf1SHong Zhang   }
21034222ddf1SHong Zhang 
21044e84afc0SStefano Zampini   /* backend general code */
21059566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "backend", &flg));
21064e84afc0SStefano Zampini   if (flg) {
21079566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
21084e84afc0SStefano Zampini     PetscFunctionReturn(0);
21094e84afc0SStefano Zampini   }
21104e84afc0SStefano Zampini 
21114222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type is not supported");
21124222ddf1SHong Zhang 
21134222ddf1SHong Zhang next:
21144222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AtB;
21154222ddf1SHong Zhang   PetscFunctionReturn(0);
21164222ddf1SHong Zhang }
21174222ddf1SHong Zhang 
21184222ddf1SHong Zhang /* ---------------------------------------------------------------- */
21194222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */
21209371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C) {
21214222ddf1SHong Zhang   Mat_Product *product = C->product;
21224222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
21234222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
21244e84afc0SStefano Zampini   const char *algTypes[5] = {"scalable", "nonscalable", "seqmpi", "backend", "hypre"};
21254e84afc0SStefano Zampini   PetscInt    nalg        = 5;
21264222ddf1SHong Zhang #else
21279371c9d4SSatish Balay   const char *algTypes[4] = {
21289371c9d4SSatish Balay     "scalable",
21299371c9d4SSatish Balay     "nonscalable",
21309371c9d4SSatish Balay     "seqmpi",
21319371c9d4SSatish Balay     "backend",
21329371c9d4SSatish Balay   };
21334e84afc0SStefano Zampini   PetscInt    nalg        = 4;
21344222ddf1SHong Zhang #endif
21354222ddf1SHong Zhang   PetscInt  alg = 1; /* set nonscalable algorithm as default */
21364222ddf1SHong Zhang   PetscBool flg;
21374222ddf1SHong Zhang   MPI_Comm  comm;
21384222ddf1SHong Zhang 
21394222ddf1SHong Zhang   PetscFunctionBegin;
21409566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
21414222ddf1SHong Zhang 
21424222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
21439566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
21444222ddf1SHong Zhang   if (flg) {
21459566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
21464222ddf1SHong Zhang 
21474222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
21484222ddf1SHong Zhang     if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
21494222ddf1SHong Zhang       MatInfo   Ainfo, Binfo;
21504222ddf1SHong Zhang       PetscInt  nz_local;
21514222ddf1SHong Zhang       PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
21524222ddf1SHong Zhang 
21539566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
21549566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
21554222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
21564222ddf1SHong Zhang 
21574222ddf1SHong Zhang       if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
21581c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm));
21594222ddf1SHong Zhang 
21604222ddf1SHong Zhang       if (alg_scalable) {
21614222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
21629566063dSJacob Faibussowitsch         PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
21639566063dSJacob Faibussowitsch         PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
21644222ddf1SHong Zhang       }
21654222ddf1SHong Zhang     }
21664222ddf1SHong Zhang   }
21674222ddf1SHong Zhang 
21684222ddf1SHong Zhang   /* Get runtime option */
21694222ddf1SHong Zhang   if (product->api_user) {
2170d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
21719566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2172d0609cedSBarry Smith     PetscOptionsEnd();
21734222ddf1SHong Zhang   } else {
2174d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
21759566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2176d0609cedSBarry Smith     PetscOptionsEnd();
21774222ddf1SHong Zhang   }
2178*48a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
21794222ddf1SHong Zhang 
21804222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ;
21814222ddf1SHong Zhang   PetscFunctionReturn(0);
21824222ddf1SHong Zhang }
21834222ddf1SHong Zhang 
21849371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C) {
21858a9c020eSBarry Smith   PetscFunctionBegin;
21868a9c020eSBarry Smith   PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
21878a9c020eSBarry Smith   C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ;
21888a9c020eSBarry Smith   PetscFunctionReturn(0);
21898a9c020eSBarry Smith }
21908a9c020eSBarry Smith 
21914222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */
21929371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C) {
21934222ddf1SHong Zhang   Mat_Product *product = C->product;
21944222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
21954e84afc0SStefano Zampini   const char  *algTypes[4] = {"scalable", "nonscalable", "at*b", "backend"};
21964e84afc0SStefano Zampini   PetscInt     nalg        = 4;
21974222ddf1SHong Zhang   PetscInt     alg         = 1; /* set default algorithm  */
21984222ddf1SHong Zhang   PetscBool    flg;
21994222ddf1SHong Zhang   MPI_Comm     comm;
22004222ddf1SHong Zhang 
22014222ddf1SHong Zhang   PetscFunctionBegin;
22024222ddf1SHong Zhang   /* Check matrix local sizes */
22039566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22049371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22059371c9d4SSatish Balay              A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
22064222ddf1SHong Zhang 
22074222ddf1SHong Zhang   /* Set default algorithm */
22089566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
2209*48a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
22104222ddf1SHong Zhang 
22114222ddf1SHong Zhang   /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22124222ddf1SHong Zhang   if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
22134222ddf1SHong Zhang     MatInfo   Ainfo, Binfo;
22144222ddf1SHong Zhang     PetscInt  nz_local;
22154222ddf1SHong Zhang     PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
22164222ddf1SHong Zhang 
22179566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
22189566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
22194222ddf1SHong Zhang     nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22204222ddf1SHong Zhang 
22214222ddf1SHong Zhang     if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
22221c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm));
22234222ddf1SHong Zhang 
22244222ddf1SHong Zhang     if (alg_scalable) {
22254222ddf1SHong Zhang       alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
22269566063dSJacob Faibussowitsch       PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
22279566063dSJacob Faibussowitsch       PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
22284222ddf1SHong Zhang     }
22294222ddf1SHong Zhang   }
22304222ddf1SHong Zhang 
22314222ddf1SHong Zhang   /* Get runtime option */
22324222ddf1SHong Zhang   if (product->api_user) {
2233d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat");
22349566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2235d0609cedSBarry Smith     PetscOptionsEnd();
22364222ddf1SHong Zhang   } else {
2237d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat");
22389566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2239d0609cedSBarry Smith     PetscOptionsEnd();
22404222ddf1SHong Zhang   }
2241*48a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
22424222ddf1SHong Zhang 
22434222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ;
22444222ddf1SHong Zhang   PetscFunctionReturn(0);
22454222ddf1SHong Zhang }
22464222ddf1SHong Zhang 
22479371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C) {
22484222ddf1SHong Zhang   Mat_Product *product = C->product;
22494222ddf1SHong Zhang   Mat          A = product->A, P = product->B;
22504222ddf1SHong Zhang   MPI_Comm     comm;
22514222ddf1SHong Zhang   PetscBool    flg;
22524222ddf1SHong Zhang   PetscInt     alg = 1; /* set default algorithm */
22534222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
22544e84afc0SStefano Zampini   const char *algTypes[5] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend"};
22554222ddf1SHong Zhang   PetscInt    nalg        = 5;
22564e84afc0SStefano Zampini #else
22574e84afc0SStefano Zampini   const char *algTypes[6] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend", "hypre"};
22584e84afc0SStefano Zampini   PetscInt    nalg        = 6;
22594222ddf1SHong Zhang #endif
22604222ddf1SHong Zhang   PetscInt pN = P->cmap->N;
22614222ddf1SHong Zhang 
22624222ddf1SHong Zhang   PetscFunctionBegin;
22634222ddf1SHong Zhang   /* Check matrix local sizes */
22649566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22659371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22669371c9d4SSatish Balay              A->rmap->rstart, A->rmap->rend, P->rmap->rstart, P->rmap->rend);
22679371c9d4SSatish Balay   PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22689371c9d4SSatish Balay              A->cmap->rstart, A->cmap->rend, P->rmap->rstart, P->rmap->rend);
22694222ddf1SHong Zhang 
22704222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
22719566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
22724222ddf1SHong Zhang   if (flg) {
22739566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
22744222ddf1SHong Zhang 
22754222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22764222ddf1SHong Zhang     if (pN > 100000) {
22774222ddf1SHong Zhang       MatInfo   Ainfo, Pinfo;
22784222ddf1SHong Zhang       PetscInt  nz_local;
22794222ddf1SHong Zhang       PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
22804222ddf1SHong Zhang 
22819566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
22829566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(P, MAT_LOCAL, &Pinfo));
22834222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated);
22844222ddf1SHong Zhang 
22854222ddf1SHong Zhang       if (pN > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
22861c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm));
22874222ddf1SHong Zhang 
22884222ddf1SHong Zhang       if (alg_scalable) {
22894222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
22909566063dSJacob Faibussowitsch         PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
22914222ddf1SHong Zhang       }
22924222ddf1SHong Zhang     }
22934222ddf1SHong Zhang   }
22944222ddf1SHong Zhang 
22954222ddf1SHong Zhang   /* Get runtime option */
22964222ddf1SHong Zhang   if (product->api_user) {
2297d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
22989566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2299d0609cedSBarry Smith     PetscOptionsEnd();
23004222ddf1SHong Zhang   } else {
2301d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
23029566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2303d0609cedSBarry Smith     PetscOptionsEnd();
23044222ddf1SHong Zhang   }
2305*48a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
23064222ddf1SHong Zhang 
23074222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ;
23084222ddf1SHong Zhang   PetscFunctionReturn(0);
23094222ddf1SHong Zhang }
23104222ddf1SHong Zhang 
23119371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C) {
23124222ddf1SHong Zhang   Mat_Product *product = C->product;
23134222ddf1SHong Zhang   Mat          A = product->A, R = product->B;
23144222ddf1SHong Zhang 
23154222ddf1SHong Zhang   PetscFunctionBegin;
23164222ddf1SHong Zhang   /* Check matrix local sizes */
23179371c9d4SSatish Balay   PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->n,
23189371c9d4SSatish Balay              A->rmap->n, R->rmap->n, R->cmap->n);
23194222ddf1SHong Zhang 
23204222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ;
23214222ddf1SHong Zhang   PetscFunctionReturn(0);
23224222ddf1SHong Zhang }
23234222ddf1SHong Zhang 
23244222ddf1SHong Zhang /*
23254222ddf1SHong Zhang  Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm
23264222ddf1SHong Zhang */
23279371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C) {
23284222ddf1SHong Zhang   Mat_Product *product     = C->product;
23294222ddf1SHong Zhang   PetscBool    flg         = PETSC_FALSE;
23304222ddf1SHong Zhang   PetscInt     alg         = 1; /* default algorithm */
23314222ddf1SHong Zhang   const char  *algTypes[3] = {"scalable", "nonscalable", "seqmpi"};
23324222ddf1SHong Zhang   PetscInt     nalg        = 3;
23334222ddf1SHong Zhang 
23344222ddf1SHong Zhang   PetscFunctionBegin;
23354222ddf1SHong Zhang   /* Set default algorithm */
23369566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
2337*48a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
23384222ddf1SHong Zhang 
23394222ddf1SHong Zhang   /* Get runtime option */
23404222ddf1SHong Zhang   if (product->api_user) {
2341d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat");
23429566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2343d0609cedSBarry Smith     PetscOptionsEnd();
23444222ddf1SHong Zhang   } else {
2345d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat");
23469566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg));
2347d0609cedSBarry Smith     PetscOptionsEnd();
23484222ddf1SHong Zhang   }
2349*48a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
23504222ddf1SHong Zhang 
23514222ddf1SHong Zhang   C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ;
23524222ddf1SHong Zhang   C->ops->productsymbolic    = MatProductSymbolic_ABC;
23534222ddf1SHong Zhang   PetscFunctionReturn(0);
23544222ddf1SHong Zhang }
23554222ddf1SHong Zhang 
23569371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C) {
23574222ddf1SHong Zhang   Mat_Product *product = C->product;
23584222ddf1SHong Zhang 
23594222ddf1SHong Zhang   PetscFunctionBegin;
23604222ddf1SHong Zhang   switch (product->type) {
23619371c9d4SSatish Balay   case MATPRODUCT_AB: PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C)); break;
23629371c9d4SSatish Balay   case MATPRODUCT_ABt: PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C)); break;
23639371c9d4SSatish Balay   case MATPRODUCT_AtB: PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C)); break;
23649371c9d4SSatish Balay   case MATPRODUCT_PtAP: PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C)); break;
23659371c9d4SSatish Balay   case MATPRODUCT_RARt: PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C)); break;
23669371c9d4SSatish Balay   case MATPRODUCT_ABC: PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C)); break;
23679371c9d4SSatish Balay   default: break;
23684222ddf1SHong Zhang   }
23694222ddf1SHong Zhang   PetscFunctionReturn(0);
23704222ddf1SHong Zhang }
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