1be1d678aSKris Buschelman 22499ec78SHong Zhang /* 32499ec78SHong Zhang Defines matrix-matrix product routines for pairs of MPIAIJ matrices 42499ec78SHong Zhang C = A * B 52499ec78SHong Zhang */ 6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 8c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 9c6db04a5SJed Brown #include <petscbt.h> 10c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> 112499ec78SHong Zhang 122499ec78SHong Zhang #undef __FUNCT__ 132499ec78SHong Zhang #define __FUNCT__ "MatMatMult_MPIAIJ_MPIAIJ" 142499ec78SHong Zhang PetscErrorCode MatMatMult_MPIAIJ_MPIAIJ(Mat A,Mat B,MatReuse scall,PetscReal fill, Mat *C) 152499ec78SHong Zhang { 162499ec78SHong Zhang PetscErrorCode ierr; 172499ec78SHong Zhang 182499ec78SHong Zhang PetscFunctionBegin; 192499ec78SHong Zhang if (scall == MAT_INITIAL_MATRIX){ 20598bc09dSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 21598bc09dSHong Zhang ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C);CHKERRQ(ierr);/* numeric product is computed as well in old version! */ 22598bc09dSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 232499ec78SHong Zhang } 24598bc09dSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 25598bc09dSHong Zhang ierr = (*(*C)->ops->matmultnumeric)(A,B,*C);CHKERRQ(ierr); 26598bc09dSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 272499ec78SHong Zhang PetscFunctionReturn(0); 282499ec78SHong Zhang } 292499ec78SHong Zhang 30f33d1a9aSHong Zhang #undef __FUNCT__ 31776b82aeSLisandro Dalcin #define __FUNCT__ "PetscContainerDestroy_Mat_MatMatMultMPI" 32776b82aeSLisandro Dalcin PetscErrorCode PetscContainerDestroy_Mat_MatMatMultMPI(void *ptr) 33f33d1a9aSHong Zhang { 34f33d1a9aSHong Zhang PetscErrorCode ierr; 359649163dSHong Zhang Mat_MatMatMultMPI *mult=(Mat_MatMatMultMPI*)ptr; 36f33d1a9aSHong Zhang 37f33d1a9aSHong Zhang PetscFunctionBegin; 386bf464f9SBarry Smith ierr = ISDestroy(&mult->isrowa);CHKERRQ(ierr); 396bf464f9SBarry Smith ierr = ISDestroy(&mult->isrowb);CHKERRQ(ierr); 406bf464f9SBarry Smith ierr = ISDestroy(&mult->iscolb);CHKERRQ(ierr); 416bf464f9SBarry Smith ierr = MatDestroy(&mult->C_seq);CHKERRQ(ierr); 426bf464f9SBarry Smith ierr = MatDestroy(&mult->A_loc);CHKERRQ(ierr); 436bf464f9SBarry Smith ierr = MatDestroy(&mult->B_seq);CHKERRQ(ierr); 44f33d1a9aSHong Zhang ierr = PetscFree(mult);CHKERRQ(ierr); 45f33d1a9aSHong Zhang PetscFunctionReturn(0); 46f33d1a9aSHong Zhang } 47f33d1a9aSHong Zhang 48598bc09dSHong Zhang #undef __FUNCT__ 49598bc09dSHong Zhang #define __FUNCT__ "MatDestroy_MPIAIJ_MatMatMult_new" 50598bc09dSHong Zhang PetscErrorCode MatDestroy_MPIAIJ_MatMatMult_new(Mat A) 51598bc09dSHong Zhang { 52598bc09dSHong Zhang PetscErrorCode ierr; 53598bc09dSHong Zhang Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data; 54598bc09dSHong Zhang Mat_PtAPMPI *ptap=a->ptap; 55598bc09dSHong Zhang 56598bc09dSHong Zhang PetscFunctionBegin; 57598bc09dSHong Zhang ierr = PetscFree2(ptap->startsj,ptap->startsj_r);CHKERRQ(ierr); 58598bc09dSHong Zhang ierr = PetscFree(ptap->bufa);CHKERRQ(ierr); 59598bc09dSHong Zhang ierr = MatDestroy(&ptap->B_loc);CHKERRQ(ierr); 60598bc09dSHong Zhang ierr = MatDestroy(&ptap->B_oth);CHKERRQ(ierr); 61598bc09dSHong Zhang ierr = PetscFree(ptap->abi);CHKERRQ(ierr); 62598bc09dSHong Zhang ierr = PetscFree(ptap->abj);CHKERRQ(ierr); 63598bc09dSHong Zhang ierr = PetscFree(ptap->apa);CHKERRQ(ierr); 64598bc09dSHong Zhang ierr = ptap->destroy(A);CHKERRQ(ierr); 65598bc09dSHong Zhang ierr = PetscFree(ptap);CHKERRQ(ierr); 66598bc09dSHong Zhang PetscFunctionReturn(0); 67598bc09dSHong Zhang } 68598bc09dSHong Zhang 692499ec78SHong Zhang #undef __FUNCT__ 702499ec78SHong Zhang #define __FUNCT__ "MatDestroy_MPIAIJ_MatMatMult" 712499ec78SHong Zhang PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(Mat A) 722499ec78SHong Zhang { 732499ec78SHong Zhang PetscErrorCode ierr; 74776b82aeSLisandro Dalcin PetscContainer container; 759649163dSHong Zhang Mat_MatMatMultMPI *mult=PETSC_NULL; 762499ec78SHong Zhang 772499ec78SHong Zhang PetscFunctionBegin; 789649163dSHong Zhang ierr = PetscObjectQuery((PetscObject)A,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr); 79bf0cc555SLisandro Dalcin if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit"); 80776b82aeSLisandro Dalcin ierr = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr); 81dce485f0SBarry Smith A->ops->destroy = mult->destroy; 82bf0cc555SLisandro Dalcin A->ops->duplicate = mult->duplicate; 83bf0cc555SLisandro Dalcin if (A->ops->destroy) { 84992edd73SBarry Smith ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 85bf0cc555SLisandro Dalcin } 86bf0cc555SLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"Mat_MatMatMultMPI",0);CHKERRQ(ierr); 872499ec78SHong Zhang PetscFunctionReturn(0); 882499ec78SHong Zhang } 892499ec78SHong Zhang 902499ec78SHong Zhang #undef __FUNCT__ 91abf897f8SHong Zhang #define __FUNCT__ "MatDuplicate_MPIAIJ_MatMatMult" 92b9c92825SBarry Smith PetscErrorCode MatDuplicate_MPIAIJ_MatMatMult(Mat A, MatDuplicateOption op, Mat *M) 93b9c92825SBarry Smith { 94abf897f8SHong Zhang PetscErrorCode ierr; 95abf897f8SHong Zhang Mat_MatMatMultMPI *mult; 96776b82aeSLisandro Dalcin PetscContainer container; 97abf897f8SHong Zhang 98abf897f8SHong Zhang PetscFunctionBegin; 99abf897f8SHong Zhang ierr = PetscObjectQuery((PetscObject)A,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr); 100bf0cc555SLisandro Dalcin if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit"); 101776b82aeSLisandro Dalcin ierr = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr); 1025c088420SHong Zhang /* Note: the container is not duplicated, because it requires deep copying of 1035c088420SHong Zhang several large data sets (see PetscContainerDestroy_Mat_MatMatMultMPI()). 1045c088420SHong Zhang These data sets are only used for repeated calling of MatMatMultNumeric(). 1055c088420SHong Zhang *M is unlikely being used in this way. Thus we create *M with pure mpiaij format */ 106dce485f0SBarry Smith ierr = (*mult->duplicate)(A,op,M);CHKERRQ(ierr); 107dce485f0SBarry Smith (*M)->ops->destroy = mult->destroy; /* = MatDestroy_MPIAIJ, *M doesn't duplicate A's container! */ 108dce485f0SBarry Smith (*M)->ops->duplicate = mult->duplicate; /* = MatDuplicate_MPIAIJ */ 109abf897f8SHong Zhang PetscFunctionReturn(0); 110abf897f8SHong Zhang } 111abf897f8SHong Zhang 112abf897f8SHong Zhang #undef __FUNCT__ 113598bc09dSHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ_new" 114598bc09dSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_new(Mat A,Mat P,Mat C) 115598bc09dSHong Zhang { 116598bc09dSHong Zhang PetscErrorCode ierr; 117598bc09dSHong Zhang Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data,*p=(Mat_MPIAIJ*)P->data,*c=(Mat_MPIAIJ*)C->data; 118598bc09dSHong Zhang Mat_SeqAIJ *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data; 119598bc09dSHong Zhang Mat_SeqAIJ *cd=(Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data; 120598bc09dSHong Zhang PetscInt *adi=ad->i,*adj,*aoi=ao->i,*aoj; 121598bc09dSHong Zhang PetscScalar *ada,*aoa,*cda=cd->a,*coa=co->a; 122598bc09dSHong Zhang Mat_SeqAIJ *p_loc,*p_oth; 123598bc09dSHong Zhang PetscInt *pi_loc,*pj_loc,*pi_oth,*pj_oth,*pj; 124598bc09dSHong Zhang PetscScalar *pa_loc,*pa_oth,*pa,*apa,valtmp,*ca; 125598bc09dSHong Zhang PetscInt cm=C->rmap->n,anz,pnz; 126598bc09dSHong Zhang Mat_PtAPMPI *ptap=c->ptap; 127598bc09dSHong Zhang PetscInt *api,*apj,*apJ,cnz,i,j,k,row; 128598bc09dSHong Zhang MPI_Comm comm=((PetscObject)A)->comm; 129598bc09dSHong Zhang PetscMPIInt rank; 130598bc09dSHong Zhang PetscInt rstart=C->rmap->rstart,cstart=C->cmap->rstart,cend=C->cmap->rend; 131598bc09dSHong Zhang PetscInt cdnz,conz,k0,k1; 132598bc09dSHong Zhang 133598bc09dSHong Zhang PetscFunctionBegin; 134598bc09dSHong Zhang /* 1) get P_oth = ptap->B_oth and P_loc = ptap->B_loc */ 135598bc09dSHong Zhang /*-----------------------------------------------------*/ 136598bc09dSHong Zhang if (ptap->reuse == MAT_INITIAL_MATRIX){ 137598bc09dSHong Zhang ptap->reuse = MAT_REUSE_MATRIX; 138598bc09dSHong Zhang } else { /* update numerical values of P_oth and P_loc */ 139598bc09dSHong Zhang ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj,&ptap->startsj_r,&ptap->bufa,&ptap->B_oth);CHKERRQ(ierr); 140598bc09dSHong Zhang ierr = MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->B_loc);CHKERRQ(ierr); 141598bc09dSHong Zhang } 142598bc09dSHong Zhang 143598bc09dSHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 144598bc09dSHong Zhang /*----------------------------------------------------------*/ 145598bc09dSHong Zhang /* get data from symbolic products */ 146598bc09dSHong Zhang p_loc = (Mat_SeqAIJ*)(ptap->B_loc)->data; 147598bc09dSHong Zhang p_oth = (Mat_SeqAIJ*)(ptap->B_oth)->data; 148598bc09dSHong Zhang pi_loc=p_loc->i; pj_loc=p_loc->j; pa_loc=p_loc->a; 149598bc09dSHong Zhang pi_oth=p_oth->i; pj_oth=p_oth->j; pa_oth=p_oth->a; 150598bc09dSHong Zhang 151598bc09dSHong Zhang /* get apa for storing dense row A[i,:]*P */ 152598bc09dSHong Zhang apa = ptap->apa; 153598bc09dSHong Zhang 154598bc09dSHong Zhang for (i=0; i<cm; i++) { 155598bc09dSHong Zhang /* diagonal portion of A */ 156598bc09dSHong Zhang anz = adi[i+1] - adi[i]; 157598bc09dSHong Zhang adj = ad->j + adi[i]; 158598bc09dSHong Zhang ada = ad->a + adi[i]; 159598bc09dSHong Zhang for (j=0; j<anz; j++) { 160598bc09dSHong Zhang row = adj[j]; 161598bc09dSHong Zhang pnz = pi_loc[row+1] - pi_loc[row]; 162598bc09dSHong Zhang pj = pj_loc + pi_loc[row]; 163598bc09dSHong Zhang pa = pa_loc + pi_loc[row]; 164598bc09dSHong Zhang 165598bc09dSHong Zhang /* perform dense axpy */ 166598bc09dSHong Zhang valtmp = ada[j]; 167598bc09dSHong Zhang for (k=0; k<pnz; k++){ 168598bc09dSHong Zhang apa[pj[k]] += valtmp*pa[k]; 169598bc09dSHong Zhang } 170598bc09dSHong Zhang ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr); 171598bc09dSHong Zhang } 172598bc09dSHong Zhang 173598bc09dSHong Zhang /* off-diagonal portion of A */ 174598bc09dSHong Zhang anz = aoi[i+1] - aoi[i]; 175598bc09dSHong Zhang aoj = ao->j + aoi[i]; 176598bc09dSHong Zhang aoa = ao->a + aoi[i]; 177598bc09dSHong Zhang for (j=0; j<anz; j++) { 178598bc09dSHong Zhang row = aoj[j]; 179598bc09dSHong Zhang pnz = pi_oth[row+1] - pi_oth[row]; 180598bc09dSHong Zhang pj = pj_oth + pi_oth[row]; 181598bc09dSHong Zhang pa = pa_oth + pi_oth[row]; 182598bc09dSHong Zhang 183598bc09dSHong Zhang /* perform dense axpy */ 184598bc09dSHong Zhang valtmp = aoa[j]; 185598bc09dSHong Zhang for (k=0; k<pnz; k++){ 186598bc09dSHong Zhang apa[pj[k]] += valtmp*pa[k]; 187598bc09dSHong Zhang } 188598bc09dSHong Zhang ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr); 189598bc09dSHong Zhang } 190598bc09dSHong Zhang 191598bc09dSHong Zhang /* set values in C */ 192598bc09dSHong Zhang row = rstart + i; 193598bc09dSHong Zhang api = ptap->abi; 194598bc09dSHong Zhang apj = ptap->abj; 195598bc09dSHong Zhang apJ = apj + api[i]; 196598bc09dSHong Zhang cnz = api[i+1] - api[i]; 197598bc09dSHong Zhang cdnz = cd->i[i+1] - cd->i[i]; 198598bc09dSHong Zhang conz = co->i[i+1] - co->i[i]; 199598bc09dSHong Zhang 200598bc09dSHong Zhang /* 1st off-diagoanl part of C */ 201598bc09dSHong Zhang ca = coa + co->i[i]; 202598bc09dSHong Zhang k = 0; 203598bc09dSHong Zhang for (k0=0; k0<conz; k0++){ 204598bc09dSHong Zhang if (apJ[k] >= cstart) break; 205598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 206598bc09dSHong Zhang apa[apJ[k]] = 0.0; 207598bc09dSHong Zhang k++; 208598bc09dSHong Zhang } 209598bc09dSHong Zhang 210598bc09dSHong Zhang /* diagonal part of C */ 211598bc09dSHong Zhang ca = cda + cd->i[i]; 212598bc09dSHong Zhang for (k1=0; k1<cdnz; k1++){ 213598bc09dSHong Zhang ca[k1] = apa[apJ[k]]; 214598bc09dSHong Zhang apa[apJ[k]] = 0.0; 215598bc09dSHong Zhang k++; 216598bc09dSHong Zhang } 217598bc09dSHong Zhang 218598bc09dSHong Zhang /* 2nd off-diagoanl part of C */ 219598bc09dSHong Zhang ca = coa + co->i[i]; 220598bc09dSHong Zhang for (; k0<conz; k0++){ 221598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 222598bc09dSHong Zhang apa[apJ[k]] = 0.0; 223598bc09dSHong Zhang k++; 224598bc09dSHong Zhang } 225598bc09dSHong Zhang } 226598bc09dSHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 227598bc09dSHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 228598bc09dSHong Zhang PetscFunctionReturn(0); 229598bc09dSHong Zhang } 230598bc09dSHong Zhang 231598bc09dSHong Zhang #undef __FUNCT__ 232598bc09dSHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ_new" 233598bc09dSHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_new(Mat A,Mat P,PetscReal fill,Mat *C) 234598bc09dSHong Zhang { 235598bc09dSHong Zhang PetscErrorCode ierr; 236598bc09dSHong Zhang MPI_Comm comm=((PetscObject)A)->comm; 237598bc09dSHong Zhang PetscMPIInt size,rank; 238598bc09dSHong Zhang Mat B_mpi; 239598bc09dSHong Zhang Mat_PtAPMPI *ptap; 240598bc09dSHong Zhang PetscFreeSpaceList free_space=PETSC_NULL,current_space=PETSC_NULL; 241598bc09dSHong Zhang Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data,*p=(Mat_MPIAIJ*)P->data,*c; 242598bc09dSHong Zhang Mat_SeqAIJ *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data; 243598bc09dSHong Zhang Mat_SeqAIJ *p_loc,*p_oth; 244598bc09dSHong Zhang PetscInt *pi_loc,*pj_loc,*pi_oth,*pj_oth,*pdti,*pdtj,*poti,*potj,*ptJ,*dnz,*onz; 245598bc09dSHong Zhang PetscInt *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,nnz,rstart=A->rmap->rstart; 246598bc09dSHong Zhang PetscInt nlnk,*lnk,*owners_co,*coi,*coj,i,k,pnz,row; 247598bc09dSHong Zhang PetscInt am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n; 248598bc09dSHong Zhang PetscBT lnkbt; 249598bc09dSHong Zhang PetscInt nzi,*bi,*bj; 250598bc09dSHong Zhang PetscInt *api,*apj,*Jptr,apnz,*prmap=p->garray,pon,nspacedouble=0,j; 251598bc09dSHong Zhang PetscScalar *apa; 252598bc09dSHong Zhang 253598bc09dSHong Zhang PetscFunctionBegin; 254598bc09dSHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 255598bc09dSHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 256598bc09dSHong Zhang 257598bc09dSHong Zhang /* create struct Mat_PtAPMPI and attached it to C later */ 258598bc09dSHong Zhang ierr = PetscNew(Mat_PtAPMPI,&ptap);CHKERRQ(ierr); 259598bc09dSHong Zhang ptap->abnz_max = 0; 260598bc09dSHong Zhang ptap->reuse = MAT_INITIAL_MATRIX; 261598bc09dSHong Zhang 262598bc09dSHong Zhang /* malloc apa to store dense row A[i,:]*P */ 263598bc09dSHong Zhang ierr = PetscMalloc((P->cmap->N)*sizeof(PetscScalar),&apa);CHKERRQ(ierr); 264598bc09dSHong Zhang ierr = PetscMemzero(apa,P->cmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 265598bc09dSHong Zhang ptap->apa = apa; 266598bc09dSHong Zhang 267598bc09dSHong Zhang 268598bc09dSHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 269598bc09dSHong Zhang ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj,&ptap->startsj_r,&ptap->bufa,&ptap->B_oth);CHKERRQ(ierr); 270598bc09dSHong Zhang /* get P_loc by taking all local rows of P */ 271598bc09dSHong Zhang ierr = MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->B_loc);CHKERRQ(ierr); 272598bc09dSHong Zhang 273598bc09dSHong Zhang p_loc = (Mat_SeqAIJ*)(ptap->B_loc)->data; 274598bc09dSHong Zhang p_oth = (Mat_SeqAIJ*)(ptap->B_oth)->data; 275598bc09dSHong Zhang pi_loc = p_loc->i; pj_loc = p_loc->j; 276598bc09dSHong Zhang pi_oth = p_oth->i; pj_oth = p_oth->j; 277598bc09dSHong Zhang 278598bc09dSHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 279598bc09dSHong Zhang /*-------------------------------------------------------------------*/ 280598bc09dSHong Zhang ierr = PetscMalloc((am+2)*sizeof(PetscInt),&api);CHKERRQ(ierr); 281598bc09dSHong Zhang ptap->abi = api; 282598bc09dSHong Zhang api[0] = 0; 283598bc09dSHong Zhang 284598bc09dSHong Zhang /* create and initialize a linked list */ 285598bc09dSHong Zhang nlnk = pN+1; 286598bc09dSHong Zhang ierr = PetscLLCreate(pN,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr); 287598bc09dSHong Zhang 288598bc09dSHong Zhang /* Initial FreeSpace size is fill*nnz(A) */ 289598bc09dSHong Zhang ierr = PetscFreeSpaceGet((PetscInt)(fill*(adi[am]+aoi[am])),&free_space);CHKERRQ(ierr); 290598bc09dSHong Zhang current_space = free_space; 291598bc09dSHong Zhang 292598bc09dSHong Zhang ierr = MatPreallocateInitialize(comm,am,pn,dnz,onz);CHKERRQ(ierr); 293598bc09dSHong Zhang for (i=0;i<am;i++) { 294598bc09dSHong Zhang apnz = 0; 295598bc09dSHong Zhang /* diagonal portion of A */ 296598bc09dSHong Zhang nzi = adi[i+1] - adi[i]; 297598bc09dSHong Zhang for (j=0; j<nzi; j++){ 298598bc09dSHong Zhang row = *adj++; 299598bc09dSHong Zhang pnz = pi_loc[row+1] - pi_loc[row]; 300598bc09dSHong Zhang Jptr = pj_loc + pi_loc[row]; 301598bc09dSHong Zhang /* add non-zero cols of P into the sorted linked list lnk */ 302598bc09dSHong Zhang ierr = PetscLLAdd(pnz,Jptr,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr); 303598bc09dSHong Zhang apnz += nlnk; 304598bc09dSHong Zhang } 305598bc09dSHong Zhang /* off-diagonal portion of A */ 306598bc09dSHong Zhang nzi = aoi[i+1] - aoi[i]; 307598bc09dSHong Zhang for (j=0; j<nzi; j++){ 308598bc09dSHong Zhang row = *aoj++; 309598bc09dSHong Zhang pnz = pi_oth[row+1] - pi_oth[row]; 310598bc09dSHong Zhang Jptr = pj_oth + pi_oth[row]; 311598bc09dSHong Zhang ierr = PetscLLAdd(pnz,Jptr,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr); 312598bc09dSHong Zhang apnz += nlnk; 313598bc09dSHong Zhang } 314598bc09dSHong Zhang 315598bc09dSHong Zhang api[i+1] = api[i] + apnz; 316598bc09dSHong Zhang if (ptap->abnz_max < apnz) ptap->abnz_max = apnz; 317598bc09dSHong Zhang 318598bc09dSHong Zhang /* if free space is not available, double the total space in the list */ 319598bc09dSHong Zhang if (current_space->local_remaining<apnz) { 320598bc09dSHong Zhang ierr = PetscFreeSpaceGet(apnz+current_space->total_array_size,¤t_space);CHKERRQ(ierr); 321598bc09dSHong Zhang nspacedouble++; 322598bc09dSHong Zhang } 323598bc09dSHong Zhang 324598bc09dSHong Zhang /* Copy data into free space, then initialize lnk */ 325598bc09dSHong Zhang ierr = PetscLLClean(pN,pN,apnz,lnk,current_space->array,lnkbt);CHKERRQ(ierr); 326598bc09dSHong Zhang ierr = MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz);CHKERRQ(ierr); 327598bc09dSHong Zhang current_space->array += apnz; 328598bc09dSHong Zhang current_space->local_used += apnz; 329598bc09dSHong Zhang current_space->local_remaining -= apnz; 330598bc09dSHong Zhang } 331598bc09dSHong Zhang 332598bc09dSHong Zhang /* Allocate space for apj, initialize apj, and */ 333598bc09dSHong Zhang /* destroy list of free space and other temporary array(s) */ 334598bc09dSHong Zhang ierr = PetscMalloc((api[am]+1)*sizeof(PetscInt),&ptap->abj);CHKERRQ(ierr); 335598bc09dSHong Zhang apj = ptap->abj; 336598bc09dSHong Zhang ierr = PetscFreeSpaceContiguous(&free_space,ptap->abj);CHKERRQ(ierr); 337598bc09dSHong Zhang ierr = PetscLLDestroy(lnk,lnkbt);CHKERRQ(ierr); 338598bc09dSHong Zhang 339598bc09dSHong Zhang /* create and assemble symbolic parallel matrix B_mpi */ 340598bc09dSHong Zhang /*----------------------------------------------------*/ 341598bc09dSHong Zhang ierr = MatCreate(comm,&B_mpi);CHKERRQ(ierr); 342598bc09dSHong Zhang ierr = MatSetSizes(B_mpi,am,pn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 343598bc09dSHong Zhang ierr = MatSetType(B_mpi,MATMPIAIJ);CHKERRQ(ierr); 344598bc09dSHong Zhang ierr = MatMPIAIJSetPreallocation(B_mpi,0,dnz,0,onz);CHKERRQ(ierr); 345598bc09dSHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 346598bc09dSHong Zhang ierr = MatSetBlockSize(B_mpi,1);CHKERRQ(ierr); 347598bc09dSHong Zhang for (i=0; i<am; i++){ 348598bc09dSHong Zhang row = i + rstart; 349598bc09dSHong Zhang apnz = api[i+1] - api[i]; 350598bc09dSHong Zhang ierr = MatSetValues(B_mpi,1,&row,apnz,apj,apa,INSERT_VALUES);CHKERRQ(ierr); 351598bc09dSHong Zhang apj += apnz; 352598bc09dSHong Zhang } 353598bc09dSHong Zhang ierr = MatAssemblyBegin(B_mpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 354598bc09dSHong Zhang ierr = MatAssemblyEnd(B_mpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 355598bc09dSHong Zhang //ierr = MatView(B_mpi,PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 356598bc09dSHong Zhang 357598bc09dSHong Zhang ptap->destroy = B_mpi->ops->destroy; 358598bc09dSHong Zhang B_mpi->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_new; 359598bc09dSHong Zhang B_mpi->ops->destroy = MatDestroy_MPIAIJ_MatMatMult_new; 360598bc09dSHong Zhang 361598bc09dSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 362598bc09dSHong Zhang c = (Mat_MPIAIJ*)B_mpi->data; 363598bc09dSHong Zhang c->ptap = ptap; 364598bc09dSHong Zhang 365598bc09dSHong Zhang *C = B_mpi; 366598bc09dSHong Zhang PetscFunctionReturn(0); 367598bc09dSHong Zhang } 368598bc09dSHong Zhang 369598bc09dSHong Zhang #undef __FUNCT__ 3702499ec78SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ" 3712499ec78SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A,Mat B,PetscReal fill,Mat *C) 3722499ec78SHong Zhang { 3732499ec78SHong Zhang PetscErrorCode ierr; 3742499ec78SHong Zhang Mat_MatMatMultMPI *mult; 375776b82aeSLisandro Dalcin PetscContainer container; 376d5821860SHong Zhang Mat AB,*seq; 377d5821860SHong Zhang Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data; 378d5821860SHong Zhang PetscInt *idx,i,start,ncols,nzA,nzB,*cmap,imark; 379598bc09dSHong Zhang PetscBool matmatmult_new=PETSC_FALSE; 3802499ec78SHong Zhang 3812499ec78SHong Zhang PetscFunctionBegin; 382d0f46423SBarry Smith if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend){ 383e32f2f54SBarry Smith SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap->rstart,A->cmap->rend,B->rmap->rstart,B->rmap->rend); 3842499ec78SHong Zhang } 385598bc09dSHong Zhang ierr = PetscOptionsGetBool(PETSC_NULL,"-matmatmult_new",&matmatmult_new,PETSC_NULL);CHKERRQ(ierr); 386598bc09dSHong Zhang if (matmatmult_new){ 387598bc09dSHong Zhang ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ_new(A,B,fill,C);;CHKERRQ(ierr); 388598bc09dSHong Zhang PetscFunctionReturn(0); 389598bc09dSHong Zhang } 390598bc09dSHong Zhang 3912499ec78SHong Zhang ierr = PetscNew(Mat_MatMatMultMPI,&mult);CHKERRQ(ierr); 3922499ec78SHong Zhang 393d5821860SHong Zhang /* get isrowb: nonzero col of A */ 394d5821860SHong Zhang start = A->cmap->rstart; 395d5821860SHong Zhang cmap = a->garray; 396d5821860SHong Zhang nzA = a->A->cmap->n; 397d5821860SHong Zhang nzB = a->B->cmap->n; 398d5821860SHong Zhang ierr = PetscMalloc((nzA+nzB)*sizeof(PetscInt), &idx);CHKERRQ(ierr); 399d5821860SHong Zhang ncols = 0; 400d5821860SHong Zhang for (i=0; i<nzB; i++) { /* row < local row index */ 401d5821860SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 402d5821860SHong Zhang else break; 403d5821860SHong Zhang } 404d5821860SHong Zhang imark = i; 405d5821860SHong Zhang for (i=0; i<nzA; i++) idx[ncols++] = start + i; /* local rows */ 406d5821860SHong Zhang for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 407d5821860SHong Zhang ierr = ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,PETSC_OWN_POINTER,&mult->isrowb);CHKERRQ(ierr); 408d5821860SHong Zhang ierr = ISCreateStride(PETSC_COMM_SELF,B->cmap->N,0,1,&mult->iscolb);CHKERRQ(ierr); 409d5821860SHong Zhang 410d5821860SHong Zhang /* get isrowa: all local rows of A */ 411d5821860SHong Zhang ierr = ISCreateStride(PETSC_COMM_SELF,A->rmap->n,A->rmap->rstart,1,&mult->isrowa);CHKERRQ(ierr); 412d5821860SHong Zhang 413d5821860SHong Zhang /* Below should go to MatMatMultNumeric_MPIAIJ_MPIAIJ() - How to generate C there? */ 4142499ec78SHong Zhang /* create a seq matrix B_seq = submatrix of B by taking rows of B that equal to nonzero col of A */ 415d5821860SHong Zhang ierr = MatGetSubMatrices(B,1,&mult->isrowb,&mult->iscolb,MAT_INITIAL_MATRIX,&seq);CHKERRQ(ierr); 416d5821860SHong Zhang mult->B_seq = *seq; 417d5821860SHong Zhang ierr = PetscFree(seq);CHKERRQ(ierr); 4182499ec78SHong Zhang 4192499ec78SHong Zhang /* create a seq matrix A_seq = submatrix of A by taking all local rows of A */ 420d5821860SHong Zhang ierr = MatGetSubMatrices(A,1,&mult->isrowa,&mult->isrowb,MAT_INITIAL_MATRIX,&seq);CHKERRQ(ierr); 421d5821860SHong Zhang mult->A_loc = *seq; 422d5821860SHong Zhang ierr = PetscFree(seq);CHKERRQ(ierr); 4232499ec78SHong Zhang 4242499ec78SHong Zhang /* compute C_seq = A_seq * B_seq */ 425*9b8102ccSHong Zhang ierr = MatMatMultSymbolic_SeqAIJ_SeqAIJ(mult->A_loc,mult->B_seq,fill,&mult->C_seq);CHKERRQ(ierr); 426*9b8102ccSHong Zhang ierr = MatMatMultNumeric_SeqAIJ_SeqAIJ(mult->A_loc,mult->B_seq,mult->C_seq);CHKERRQ(ierr); 4272499ec78SHong Zhang 4282499ec78SHong Zhang /* create mpi matrix C by concatinating C_seq */ 4292499ec78SHong Zhang ierr = PetscObjectReference((PetscObject)mult->C_seq);CHKERRQ(ierr); /* prevent C_seq being destroyed by MatMerge() */ 430*9b8102ccSHong Zhang ierr = MatMergeSymbolic(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,&AB);CHKERRQ(ierr); 431*9b8102ccSHong Zhang ierr = MatMergeNumeric(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,AB);CHKERRQ(ierr); 4322499ec78SHong Zhang 4332499ec78SHong Zhang /* attach the supporting struct to C for reuse of symbolic C */ 434776b82aeSLisandro Dalcin ierr = PetscContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr); 435776b82aeSLisandro Dalcin ierr = PetscContainerSetPointer(container,mult);CHKERRQ(ierr); 436776b82aeSLisandro Dalcin ierr = PetscContainerSetUserDestroy(container,PetscContainerDestroy_Mat_MatMatMultMPI);CHKERRQ(ierr); 437d5821860SHong Zhang ierr = PetscObjectCompose((PetscObject)AB,"Mat_MatMatMultMPI",(PetscObject)container);CHKERRQ(ierr); 438b160f555SLisandro Dalcin ierr = PetscContainerDestroy(&container);CHKERRQ(ierr); 439d5821860SHong Zhang mult->destroy = AB->ops->destroy; 440d5821860SHong Zhang mult->duplicate = AB->ops->duplicate; 441598bc09dSHong Zhang AB->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ; 442d5821860SHong Zhang AB->ops->destroy = MatDestroy_MPIAIJ_MatMatMult; 443d5821860SHong Zhang AB->ops->duplicate = MatDuplicate_MPIAIJ_MatMatMult; 4448cdbd757SHong Zhang AB->ops->matmult = MatMatMult_MPIAIJ_MPIAIJ; 445d5821860SHong Zhang *C = AB; 4462499ec78SHong Zhang PetscFunctionReturn(0); 4472499ec78SHong Zhang } 4482499ec78SHong Zhang 4492499ec78SHong Zhang /* This routine is called ONLY in the case of reusing previously computed symbolic C */ 4502499ec78SHong Zhang #undef __FUNCT__ 4512499ec78SHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ" 4522499ec78SHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A,Mat B,Mat C) 4532499ec78SHong Zhang { 4542499ec78SHong Zhang PetscErrorCode ierr; 4552499ec78SHong Zhang Mat *seq; 4562499ec78SHong Zhang Mat_MatMatMultMPI *mult; 457776b82aeSLisandro Dalcin PetscContainer container; 4582499ec78SHong Zhang 4592499ec78SHong Zhang PetscFunctionBegin; 460f33d1a9aSHong Zhang ierr = PetscObjectQuery((PetscObject)C,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr); 461bf0cc555SLisandro Dalcin if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit"); 462776b82aeSLisandro Dalcin ierr = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr); 4632499ec78SHong Zhang seq = &mult->B_seq; 4642499ec78SHong Zhang ierr = MatGetSubMatrices(B,1,&mult->isrowb,&mult->iscolb,MAT_REUSE_MATRIX,&seq);CHKERRQ(ierr); 4652499ec78SHong Zhang mult->B_seq = *seq; 4662499ec78SHong Zhang 4672499ec78SHong Zhang seq = &mult->A_loc; 4682499ec78SHong Zhang ierr = MatGetSubMatrices(A,1,&mult->isrowa,&mult->isrowb,MAT_REUSE_MATRIX,&seq);CHKERRQ(ierr); 4692499ec78SHong Zhang mult->A_loc = *seq; 4702499ec78SHong Zhang 471598bc09dSHong Zhang ierr = MatMatMultNumeric_SeqAIJ_SeqAIJ_SparseAxpy(mult->A_loc,mult->B_seq,mult->C_seq);CHKERRQ(ierr); 4722499ec78SHong Zhang 4732499ec78SHong Zhang ierr = PetscObjectReference((PetscObject)mult->C_seq);CHKERRQ(ierr); 474d0f46423SBarry Smith ierr = MatMerge(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 4752499ec78SHong Zhang PetscFunctionReturn(0); 4762499ec78SHong Zhang } 4779123193aSHong Zhang 4789123193aSHong Zhang #undef __FUNCT__ 4799123193aSHong Zhang #define __FUNCT__ "MatMatMult_MPIAIJ_MPIDense" 4809123193aSHong Zhang PetscErrorCode MatMatMult_MPIAIJ_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 4819123193aSHong Zhang { 4829123193aSHong Zhang PetscErrorCode ierr; 4839123193aSHong Zhang 4849123193aSHong Zhang PetscFunctionBegin; 4859123193aSHong Zhang if (scall == MAT_INITIAL_MATRIX){ 4869123193aSHong Zhang ierr = MatMatMultSymbolic_MPIAIJ_MPIDense(A,B,fill,C);CHKERRQ(ierr); 4879123193aSHong Zhang } 4889123193aSHong Zhang ierr = MatMatMultNumeric_MPIAIJ_MPIDense(A,B,*C);CHKERRQ(ierr); 4899123193aSHong Zhang PetscFunctionReturn(0); 4909123193aSHong Zhang } 4919123193aSHong Zhang 4924324174eSBarry Smith typedef struct { 4934324174eSBarry Smith Mat workB; 4944324174eSBarry Smith PetscScalar *rvalues,*svalues; 4954324174eSBarry Smith MPI_Request *rwaits,*swaits; 4964324174eSBarry Smith } MPIAIJ_MPIDense; 4974324174eSBarry Smith 4987af9e4fdSHong Zhang #undef __FUNCT__ 4997af9e4fdSHong Zhang #define __FUNCT__ "MPIAIJ_MPIDenseDestroy" 5004324174eSBarry Smith PetscErrorCode MPIAIJ_MPIDenseDestroy(void *ctx) 5014324174eSBarry Smith { 5024324174eSBarry Smith MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense*) ctx; 5034324174eSBarry Smith PetscErrorCode ierr; 5044324174eSBarry Smith 5054324174eSBarry Smith PetscFunctionBegin; 5066bf464f9SBarry Smith ierr = MatDestroy(&contents->workB);CHKERRQ(ierr); 5074324174eSBarry Smith ierr = PetscFree4(contents->rvalues,contents->svalues,contents->rwaits,contents->swaits);CHKERRQ(ierr); 5084324174eSBarry Smith ierr = PetscFree(contents);CHKERRQ(ierr); 5094324174eSBarry Smith PetscFunctionReturn(0); 5104324174eSBarry Smith } 5114324174eSBarry Smith 5129123193aSHong Zhang #undef __FUNCT__ 5139123193aSHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIDense" 5149123193aSHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 5159123193aSHong Zhang { 5169123193aSHong Zhang PetscErrorCode ierr; 517f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ*) A->data; 518d0f46423SBarry Smith PetscInt nz = aij->B->cmap->n; 519bf0cc555SLisandro Dalcin PetscContainer container; 5204324174eSBarry Smith MPIAIJ_MPIDense *contents; 5214324174eSBarry Smith VecScatter ctx = aij->Mvctx; 5224324174eSBarry Smith VecScatter_MPI_General *from = (VecScatter_MPI_General*) ctx->fromdata; 5234324174eSBarry Smith VecScatter_MPI_General *to = ( VecScatter_MPI_General*) ctx->todata; 524d0f46423SBarry Smith PetscInt m=A->rmap->n,n=B->cmap->n; 5259123193aSHong Zhang 5269123193aSHong Zhang PetscFunctionBegin; 527cb2480eaSBarry Smith ierr = MatCreate(((PetscObject)B)->comm,C);CHKERRQ(ierr); 528d0f46423SBarry Smith ierr = MatSetSizes(*C,m,n,A->rmap->N,B->cmap->N);CHKERRQ(ierr); 529cb2480eaSBarry Smith ierr = MatSetType(*C,MATMPIDENSE);CHKERRQ(ierr); 530cb2480eaSBarry Smith ierr = MatAssemblyBegin(*C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 531cb2480eaSBarry Smith ierr = MatAssemblyEnd(*C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 5328cdbd757SHong Zhang (*C)->ops->matmult = MatMatMult_MPIAIJ_MPIDense; 533f32d5d43SBarry Smith 5344324174eSBarry Smith ierr = PetscNew(MPIAIJ_MPIDense,&contents);CHKERRQ(ierr); 535f32d5d43SBarry Smith /* Create work matrix used to store off processor rows of B needed for local product */ 536d0f46423SBarry Smith ierr = MatCreateSeqDense(PETSC_COMM_SELF,nz,B->cmap->N,PETSC_NULL,&contents->workB);CHKERRQ(ierr); 5374324174eSBarry Smith /* Create work arrays needed */ 538d0f46423SBarry Smith ierr = PetscMalloc4(B->cmap->N*from->starts[from->n],PetscScalar,&contents->rvalues, 539d0f46423SBarry Smith B->cmap->N*to->starts[to->n],PetscScalar,&contents->svalues, 5404324174eSBarry Smith from->n,MPI_Request,&contents->rwaits, 5414324174eSBarry Smith to->n,MPI_Request,&contents->swaits);CHKERRQ(ierr); 5424324174eSBarry Smith 543bf0cc555SLisandro Dalcin ierr = PetscContainerCreate(((PetscObject)A)->comm,&container);CHKERRQ(ierr); 544bf0cc555SLisandro Dalcin ierr = PetscContainerSetPointer(container,contents);CHKERRQ(ierr); 545bf0cc555SLisandro Dalcin ierr = PetscContainerSetUserDestroy(container,MPIAIJ_MPIDenseDestroy);CHKERRQ(ierr); 546bf0cc555SLisandro Dalcin ierr = PetscObjectCompose((PetscObject)(*C),"workB",(PetscObject)container);CHKERRQ(ierr); 547bf0cc555SLisandro Dalcin ierr = PetscContainerDestroy(&container);CHKERRQ(ierr); 5489123193aSHong Zhang PetscFunctionReturn(0); 5499123193aSHong Zhang } 5509123193aSHong Zhang 5517af9e4fdSHong Zhang #undef __FUNCT__ 5527af9e4fdSHong Zhang #define __FUNCT__ "MatMPIDenseScatter" 553f32d5d43SBarry Smith /* 5542636ff26SBarry Smith Performs an efficient scatter on the rows of B needed by this process; this is 5552636ff26SBarry Smith a modification of the VecScatterBegin_() routines. 556f32d5d43SBarry Smith */ 5574324174eSBarry Smith PetscErrorCode MatMPIDenseScatter(Mat A,Mat B,Mat C,Mat *outworkB) 558f32d5d43SBarry Smith { 559f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 560f32d5d43SBarry Smith PetscErrorCode ierr; 561f32d5d43SBarry Smith PetscScalar *b,*w,*svalues,*rvalues; 562f32d5d43SBarry Smith VecScatter ctx = aij->Mvctx; 563f32d5d43SBarry Smith VecScatter_MPI_General *from = (VecScatter_MPI_General*) ctx->fromdata; 564f32d5d43SBarry Smith VecScatter_MPI_General *to = ( VecScatter_MPI_General*) ctx->todata; 565f32d5d43SBarry Smith PetscInt i,j,k; 566aa5bb8c0SSatish Balay PetscInt *sindices,*sstarts,*rindices,*rstarts; 567aa5bb8c0SSatish Balay PetscMPIInt *sprocs,*rprocs,nrecvs; 568f32d5d43SBarry Smith MPI_Request *swaits,*rwaits; 5697adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 570d0f46423SBarry Smith PetscMPIInt tag = ((PetscObject)ctx)->tag,ncols = B->cmap->N, nrows = aij->B->cmap->n,imdex,nrowsB = B->rmap->n; 571f32d5d43SBarry Smith MPI_Status status; 5724324174eSBarry Smith MPIAIJ_MPIDense *contents; 573bf0cc555SLisandro Dalcin PetscContainer container; 5744324174eSBarry Smith Mat workB; 575f32d5d43SBarry Smith 576f32d5d43SBarry Smith PetscFunctionBegin; 577bf0cc555SLisandro Dalcin ierr = PetscObjectQuery((PetscObject)C,"workB",(PetscObject*)&container);CHKERRQ(ierr); 578bf0cc555SLisandro Dalcin if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit"); 579bf0cc555SLisandro Dalcin ierr = PetscContainerGetPointer(container,(void**)&contents);CHKERRQ(ierr); 5804324174eSBarry Smith 5814324174eSBarry Smith workB = *outworkB = contents->workB; 582e32f2f54SBarry Smith if (nrows != workB->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Number of rows of workB %D not equal to columns of aij->B %D",nrows,workB->cmap->n); 583f32d5d43SBarry Smith sindices = to->indices; 584f32d5d43SBarry Smith sstarts = to->starts; 585f32d5d43SBarry Smith sprocs = to->procs; 5864324174eSBarry Smith swaits = contents->swaits; 5874324174eSBarry Smith svalues = contents->svalues; 588f32d5d43SBarry Smith 589f32d5d43SBarry Smith rindices = from->indices; 590f32d5d43SBarry Smith rstarts = from->starts; 591f32d5d43SBarry Smith rprocs = from->procs; 5924324174eSBarry Smith rwaits = contents->rwaits; 5934324174eSBarry Smith rvalues = contents->rvalues; 594f32d5d43SBarry Smith 595f32d5d43SBarry Smith ierr = MatGetArray(B,&b);CHKERRQ(ierr); 596f32d5d43SBarry Smith ierr = MatGetArray(workB,&w);CHKERRQ(ierr); 597f32d5d43SBarry Smith 598f32d5d43SBarry Smith for (i=0; i<from->n; i++) { 599f32d5d43SBarry Smith ierr = MPI_Irecv(rvalues+ncols*rstarts[i],ncols*(rstarts[i+1]-rstarts[i]),MPIU_SCALAR,rprocs[i],tag,comm,rwaits+i);CHKERRQ(ierr); 600f32d5d43SBarry Smith } 601f32d5d43SBarry Smith 602f32d5d43SBarry Smith for (i=0; i<to->n; i++) { 603f32d5d43SBarry Smith /* pack a message at a time */ 604f32d5d43SBarry Smith CHKMEMQ; 605f32d5d43SBarry Smith for (j=0; j<sstarts[i+1]-sstarts[i]; j++){ 606f32d5d43SBarry Smith for (k=0; k<ncols; k++) { 607f32d5d43SBarry Smith svalues[ncols*(sstarts[i] + j) + k] = b[sindices[sstarts[i]+j] + nrowsB*k]; 6082636ff26SBarry Smith } 6092636ff26SBarry Smith } 610f32d5d43SBarry Smith CHKMEMQ; 611f32d5d43SBarry Smith ierr = MPI_Isend(svalues+ncols*sstarts[i],ncols*(sstarts[i+1]-sstarts[i]),MPIU_SCALAR,sprocs[i],tag,comm,swaits+i);CHKERRQ(ierr); 612f32d5d43SBarry Smith } 6132636ff26SBarry Smith 614f32d5d43SBarry Smith nrecvs = from->n; 615f32d5d43SBarry Smith while (nrecvs) { 616f32d5d43SBarry Smith ierr = MPI_Waitany(from->n,rwaits,&imdex,&status);CHKERRQ(ierr); 617f32d5d43SBarry Smith nrecvs--; 618f32d5d43SBarry Smith /* unpack a message at a time */ 619f32d5d43SBarry Smith CHKMEMQ; 620f32d5d43SBarry Smith for (j=0; j<rstarts[imdex+1]-rstarts[imdex]; j++){ 621f32d5d43SBarry Smith for (k=0; k<ncols; k++) { 622f32d5d43SBarry Smith w[rindices[rstarts[imdex]+j] + nrows*k] = rvalues[ncols*(rstarts[imdex] + j) + k]; 6232636ff26SBarry Smith } 6242636ff26SBarry Smith } 625f32d5d43SBarry Smith CHKMEMQ; 626f32d5d43SBarry Smith } 627cb9801acSJed Brown if (to->n) {ierr = MPI_Waitall(to->n,swaits,to->sstatus);CHKERRQ(ierr);} 628f32d5d43SBarry Smith 629f32d5d43SBarry Smith ierr = MatRestoreArray(B,&b);CHKERRQ(ierr); 630f32d5d43SBarry Smith ierr = MatRestoreArray(workB,&w);CHKERRQ(ierr); 631f32d5d43SBarry Smith ierr = MatAssemblyBegin(workB,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 632f32d5d43SBarry Smith ierr = MatAssemblyEnd(workB,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 633f32d5d43SBarry Smith PetscFunctionReturn(0); 634f32d5d43SBarry Smith } 635f32d5d43SBarry Smith extern PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat,Mat,Mat); 636f32d5d43SBarry Smith 6379123193aSHong Zhang #undef __FUNCT__ 6389123193aSHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIDense" 6399123193aSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A,Mat B,Mat C) 6409123193aSHong Zhang { 6419123193aSHong Zhang PetscErrorCode ierr; 642f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 643f32d5d43SBarry Smith Mat_MPIDense *bdense = (Mat_MPIDense*)B->data; 644f32d5d43SBarry Smith Mat_MPIDense *cdense = (Mat_MPIDense*)C->data; 645f32d5d43SBarry Smith Mat workB; 6469123193aSHong Zhang 6479123193aSHong Zhang PetscFunctionBegin; 6489123193aSHong Zhang 649f32d5d43SBarry Smith /* diagonal block of A times all local rows of B*/ 650f32d5d43SBarry Smith ierr = MatMatMultNumeric_SeqAIJ_SeqDense(aij->A,bdense->A,cdense->A);CHKERRQ(ierr); 651f32d5d43SBarry Smith 652f32d5d43SBarry Smith /* get off processor parts of B needed to complete the product */ 6534324174eSBarry Smith ierr = MatMPIDenseScatter(A,B,C,&workB);CHKERRQ(ierr); 654f32d5d43SBarry Smith 655f32d5d43SBarry Smith /* off-diagonal block of A times nonlocal rows of B */ 656f32d5d43SBarry Smith ierr = MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A);CHKERRQ(ierr); 6579123193aSHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6589123193aSHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6599123193aSHong Zhang PetscFunctionReturn(0); 6609123193aSHong Zhang } 6619123193aSHong Zhang 662