xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision 598bc09d9faf0254dd03000d80f5e11dea0e022f)
1be1d678aSKris Buschelman 
22499ec78SHong Zhang /*
32499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
42499ec78SHong Zhang           C = A * B
52499ec78SHong Zhang */
6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
8c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
9c6db04a5SJed Brown #include <petscbt.h>
10c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
112499ec78SHong Zhang 
122499ec78SHong Zhang #undef __FUNCT__
132499ec78SHong Zhang #define __FUNCT__ "MatMatMult_MPIAIJ_MPIAIJ"
142499ec78SHong Zhang PetscErrorCode MatMatMult_MPIAIJ_MPIAIJ(Mat A,Mat B,MatReuse scall,PetscReal fill, Mat *C)
152499ec78SHong Zhang {
162499ec78SHong Zhang   PetscErrorCode ierr;
172499ec78SHong Zhang 
182499ec78SHong Zhang   PetscFunctionBegin;
192499ec78SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
20598bc09dSHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
21598bc09dSHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C);CHKERRQ(ierr);/* numeric product is computed as well in old version! */
22598bc09dSHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
232499ec78SHong Zhang   }
24598bc09dSHong Zhang   ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
25598bc09dSHong Zhang   ierr = (*(*C)->ops->matmultnumeric)(A,B,*C);CHKERRQ(ierr);
26598bc09dSHong Zhang   ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
272499ec78SHong Zhang   PetscFunctionReturn(0);
282499ec78SHong Zhang }
292499ec78SHong Zhang 
30f33d1a9aSHong Zhang #undef __FUNCT__
31776b82aeSLisandro Dalcin #define __FUNCT__ "PetscContainerDestroy_Mat_MatMatMultMPI"
32776b82aeSLisandro Dalcin PetscErrorCode PetscContainerDestroy_Mat_MatMatMultMPI(void *ptr)
33f33d1a9aSHong Zhang {
34f33d1a9aSHong Zhang   PetscErrorCode       ierr;
359649163dSHong Zhang   Mat_MatMatMultMPI    *mult=(Mat_MatMatMultMPI*)ptr;
36f33d1a9aSHong Zhang 
37f33d1a9aSHong Zhang   PetscFunctionBegin;
386bf464f9SBarry Smith   ierr = ISDestroy(&mult->isrowa);CHKERRQ(ierr);
396bf464f9SBarry Smith   ierr = ISDestroy(&mult->isrowb);CHKERRQ(ierr);
406bf464f9SBarry Smith   ierr = ISDestroy(&mult->iscolb);CHKERRQ(ierr);
416bf464f9SBarry Smith   ierr = MatDestroy(&mult->C_seq);CHKERRQ(ierr);
426bf464f9SBarry Smith   ierr = MatDestroy(&mult->A_loc);CHKERRQ(ierr);
436bf464f9SBarry Smith   ierr = MatDestroy(&mult->B_seq);CHKERRQ(ierr);
44f33d1a9aSHong Zhang   ierr = PetscFree(mult);CHKERRQ(ierr);
45f33d1a9aSHong Zhang   PetscFunctionReturn(0);
46f33d1a9aSHong Zhang }
47f33d1a9aSHong Zhang 
48598bc09dSHong Zhang #undef __FUNCT__
49598bc09dSHong Zhang #define __FUNCT__ "MatDestroy_MPIAIJ_MatMatMult_new"
50598bc09dSHong Zhang PetscErrorCode MatDestroy_MPIAIJ_MatMatMult_new(Mat A)
51598bc09dSHong Zhang {
52598bc09dSHong Zhang   PetscErrorCode ierr;
53598bc09dSHong Zhang   Mat_MPIAIJ     *a=(Mat_MPIAIJ*)A->data;
54598bc09dSHong Zhang   Mat_PtAPMPI    *ptap=a->ptap;
55598bc09dSHong Zhang 
56598bc09dSHong Zhang   PetscFunctionBegin;
57598bc09dSHong Zhang   ierr = PetscFree2(ptap->startsj,ptap->startsj_r);CHKERRQ(ierr);
58598bc09dSHong Zhang   ierr = PetscFree(ptap->bufa);CHKERRQ(ierr);
59598bc09dSHong Zhang   ierr = MatDestroy(&ptap->B_loc);CHKERRQ(ierr);
60598bc09dSHong Zhang   ierr = MatDestroy(&ptap->B_oth);CHKERRQ(ierr);
61598bc09dSHong Zhang   ierr = PetscFree(ptap->abi);CHKERRQ(ierr);
62598bc09dSHong Zhang   ierr = PetscFree(ptap->abj);CHKERRQ(ierr);
63598bc09dSHong Zhang   ierr = PetscFree(ptap->apa);CHKERRQ(ierr);
64598bc09dSHong Zhang   ierr = ptap->destroy(A);CHKERRQ(ierr);
65598bc09dSHong Zhang   ierr = PetscFree(ptap);CHKERRQ(ierr);
66598bc09dSHong Zhang   PetscFunctionReturn(0);
67598bc09dSHong Zhang }
68598bc09dSHong Zhang 
692499ec78SHong Zhang #undef __FUNCT__
702499ec78SHong Zhang #define __FUNCT__ "MatDestroy_MPIAIJ_MatMatMult"
712499ec78SHong Zhang PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(Mat A)
722499ec78SHong Zhang {
732499ec78SHong Zhang   PetscErrorCode     ierr;
74776b82aeSLisandro Dalcin   PetscContainer     container;
759649163dSHong Zhang   Mat_MatMatMultMPI  *mult=PETSC_NULL;
762499ec78SHong Zhang 
772499ec78SHong Zhang   PetscFunctionBegin;
789649163dSHong Zhang   ierr = PetscObjectQuery((PetscObject)A,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr);
79bf0cc555SLisandro Dalcin   if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit");
80776b82aeSLisandro Dalcin   ierr = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr);
81dce485f0SBarry Smith   A->ops->destroy   = mult->destroy;
82bf0cc555SLisandro Dalcin   A->ops->duplicate = mult->duplicate;
83bf0cc555SLisandro Dalcin   if (A->ops->destroy) {
84992edd73SBarry Smith     ierr = (*A->ops->destroy)(A);CHKERRQ(ierr);
85bf0cc555SLisandro Dalcin   }
86bf0cc555SLisandro Dalcin   ierr = PetscObjectCompose((PetscObject)A,"Mat_MatMatMultMPI",0);CHKERRQ(ierr);
872499ec78SHong Zhang   PetscFunctionReturn(0);
882499ec78SHong Zhang }
892499ec78SHong Zhang 
902499ec78SHong Zhang #undef __FUNCT__
91abf897f8SHong Zhang #define __FUNCT__ "MatDuplicate_MPIAIJ_MatMatMult"
92b9c92825SBarry Smith PetscErrorCode MatDuplicate_MPIAIJ_MatMatMult(Mat A, MatDuplicateOption op, Mat *M)
93b9c92825SBarry Smith {
94abf897f8SHong Zhang   PetscErrorCode     ierr;
95abf897f8SHong Zhang   Mat_MatMatMultMPI  *mult;
96776b82aeSLisandro Dalcin   PetscContainer     container;
97abf897f8SHong Zhang 
98abf897f8SHong Zhang   PetscFunctionBegin;
99abf897f8SHong Zhang   ierr = PetscObjectQuery((PetscObject)A,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr);
100bf0cc555SLisandro Dalcin   if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit");
101776b82aeSLisandro Dalcin   ierr  = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr);
1025c088420SHong Zhang   /* Note: the container is not duplicated, because it requires deep copying of
1035c088420SHong Zhang      several large data sets (see PetscContainerDestroy_Mat_MatMatMultMPI()).
1045c088420SHong Zhang      These data sets are only used for repeated calling of MatMatMultNumeric().
1055c088420SHong Zhang      *M is unlikely being used in this way. Thus we create *M with pure mpiaij format */
106dce485f0SBarry Smith   ierr = (*mult->duplicate)(A,op,M);CHKERRQ(ierr);
107dce485f0SBarry Smith   (*M)->ops->destroy   = mult->destroy;   /* = MatDestroy_MPIAIJ, *M doesn't duplicate A's container! */
108dce485f0SBarry Smith   (*M)->ops->duplicate = mult->duplicate; /* = MatDuplicate_MPIAIJ */
109abf897f8SHong Zhang   PetscFunctionReturn(0);
110abf897f8SHong Zhang }
111abf897f8SHong Zhang 
112abf897f8SHong Zhang #undef __FUNCT__
113598bc09dSHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ_new"
114598bc09dSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_new(Mat A,Mat P,Mat C)
115598bc09dSHong Zhang {
116598bc09dSHong Zhang   PetscErrorCode     ierr;
117598bc09dSHong Zhang   Mat_MPIAIJ         *a=(Mat_MPIAIJ*)A->data,*p=(Mat_MPIAIJ*)P->data,*c=(Mat_MPIAIJ*)C->data;
118598bc09dSHong Zhang   Mat_SeqAIJ         *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
119598bc09dSHong Zhang   Mat_SeqAIJ         *cd=(Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data;
120598bc09dSHong Zhang   PetscInt           *adi=ad->i,*adj,*aoi=ao->i,*aoj;
121598bc09dSHong Zhang   PetscScalar        *ada,*aoa,*cda=cd->a,*coa=co->a;
122598bc09dSHong Zhang   Mat_SeqAIJ         *p_loc,*p_oth;
123598bc09dSHong Zhang   PetscInt           *pi_loc,*pj_loc,*pi_oth,*pj_oth,*pj;
124598bc09dSHong Zhang   PetscScalar        *pa_loc,*pa_oth,*pa,*apa,valtmp,*ca;
125598bc09dSHong Zhang   PetscInt           cm=C->rmap->n,anz,pnz;
126598bc09dSHong Zhang   Mat_PtAPMPI        *ptap=c->ptap;
127598bc09dSHong Zhang   PetscInt           *api,*apj,*apJ,cnz,i,j,k,row;
128598bc09dSHong Zhang   MPI_Comm           comm=((PetscObject)A)->comm;
129598bc09dSHong Zhang   PetscMPIInt        rank;
130598bc09dSHong Zhang   PetscInt           rstart=C->rmap->rstart,cstart=C->cmap->rstart,cend=C->cmap->rend;
131598bc09dSHong Zhang   PetscInt           cdnz,conz,k0,k1;
132598bc09dSHong Zhang 
133598bc09dSHong Zhang   PetscFunctionBegin;
134598bc09dSHong Zhang   /* 1) get P_oth = ptap->B_oth  and P_loc = ptap->B_loc */
135598bc09dSHong Zhang   /*-----------------------------------------------------*/
136598bc09dSHong Zhang   if (ptap->reuse == MAT_INITIAL_MATRIX){
137598bc09dSHong Zhang     ptap->reuse = MAT_REUSE_MATRIX;
138598bc09dSHong Zhang   } else { /* update numerical values of P_oth and P_loc */
139598bc09dSHong Zhang     ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj,&ptap->startsj_r,&ptap->bufa,&ptap->B_oth);CHKERRQ(ierr);
140598bc09dSHong Zhang     ierr = MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->B_loc);CHKERRQ(ierr);
141598bc09dSHong Zhang   }
142598bc09dSHong Zhang 
143598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
144598bc09dSHong Zhang   /*----------------------------------------------------------*/
145598bc09dSHong Zhang   /* get data from symbolic products */
146598bc09dSHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->B_loc)->data;
147598bc09dSHong Zhang   p_oth = (Mat_SeqAIJ*)(ptap->B_oth)->data;
148598bc09dSHong Zhang   pi_loc=p_loc->i; pj_loc=p_loc->j; pa_loc=p_loc->a;
149598bc09dSHong Zhang   pi_oth=p_oth->i; pj_oth=p_oth->j; pa_oth=p_oth->a;
150598bc09dSHong Zhang 
151598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
152598bc09dSHong Zhang   apa = ptap->apa;
153598bc09dSHong Zhang 
154598bc09dSHong Zhang   for (i=0; i<cm; i++) {
155598bc09dSHong Zhang     /* diagonal portion of A */
156598bc09dSHong Zhang     anz = adi[i+1] - adi[i];
157598bc09dSHong Zhang     adj = ad->j + adi[i];
158598bc09dSHong Zhang     ada = ad->a + adi[i];
159598bc09dSHong Zhang     for (j=0; j<anz; j++) {
160598bc09dSHong Zhang       row = adj[j];
161598bc09dSHong Zhang       pnz = pi_loc[row+1] - pi_loc[row];
162598bc09dSHong Zhang       pj  = pj_loc + pi_loc[row];
163598bc09dSHong Zhang       pa  = pa_loc + pi_loc[row];
164598bc09dSHong Zhang 
165598bc09dSHong Zhang       /* perform dense axpy */
166598bc09dSHong Zhang       valtmp = ada[j];
167598bc09dSHong Zhang       for (k=0; k<pnz; k++){
168598bc09dSHong Zhang         apa[pj[k]] += valtmp*pa[k];
169598bc09dSHong Zhang       }
170598bc09dSHong Zhang       ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr);
171598bc09dSHong Zhang     }
172598bc09dSHong Zhang 
173598bc09dSHong Zhang     /* off-diagonal portion of A */
174598bc09dSHong Zhang     anz = aoi[i+1] - aoi[i];
175598bc09dSHong Zhang     aoj = ao->j + aoi[i];
176598bc09dSHong Zhang     aoa = ao->a + aoi[i];
177598bc09dSHong Zhang     for (j=0; j<anz; j++) {
178598bc09dSHong Zhang       row = aoj[j];
179598bc09dSHong Zhang       pnz = pi_oth[row+1] - pi_oth[row];
180598bc09dSHong Zhang       pj  = pj_oth + pi_oth[row];
181598bc09dSHong Zhang       pa  = pa_oth + pi_oth[row];
182598bc09dSHong Zhang 
183598bc09dSHong Zhang       /* perform dense axpy */
184598bc09dSHong Zhang       valtmp = aoa[j];
185598bc09dSHong Zhang       for (k=0; k<pnz; k++){
186598bc09dSHong Zhang         apa[pj[k]] += valtmp*pa[k];
187598bc09dSHong Zhang       }
188598bc09dSHong Zhang       ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr);
189598bc09dSHong Zhang     }
190598bc09dSHong Zhang 
191598bc09dSHong Zhang     /* set values in C */
192598bc09dSHong Zhang     row = rstart + i;
193598bc09dSHong Zhang     api = ptap->abi;
194598bc09dSHong Zhang     apj = ptap->abj;
195598bc09dSHong Zhang     apJ = apj + api[i];
196598bc09dSHong Zhang     cnz = api[i+1] - api[i];
197598bc09dSHong Zhang     cdnz = cd->i[i+1] - cd->i[i];
198598bc09dSHong Zhang     conz = co->i[i+1] - co->i[i];
199598bc09dSHong Zhang 
200598bc09dSHong Zhang     /* 1st off-diagoanl part of C */
201598bc09dSHong Zhang     ca = coa + co->i[i];
202598bc09dSHong Zhang     k  = 0;
203598bc09dSHong Zhang     for (k0=0; k0<conz; k0++){
204598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
205598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
206598bc09dSHong Zhang       apa[apJ[k]] = 0.0;
207598bc09dSHong Zhang       k++;
208598bc09dSHong Zhang     }
209598bc09dSHong Zhang 
210598bc09dSHong Zhang     /* diagonal part of C */
211598bc09dSHong Zhang     ca = cda + cd->i[i];
212598bc09dSHong Zhang     for (k1=0; k1<cdnz; k1++){
213598bc09dSHong Zhang       ca[k1]      = apa[apJ[k]];
214598bc09dSHong Zhang       apa[apJ[k]] = 0.0;
215598bc09dSHong Zhang       k++;
216598bc09dSHong Zhang     }
217598bc09dSHong Zhang 
218598bc09dSHong Zhang     /* 2nd off-diagoanl part of C */
219598bc09dSHong Zhang     ca = coa + co->i[i];
220598bc09dSHong Zhang     for (; k0<conz; k0++){
221598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
222598bc09dSHong Zhang       apa[apJ[k]] = 0.0;
223598bc09dSHong Zhang       k++;
224598bc09dSHong Zhang     }
225598bc09dSHong Zhang   }
226598bc09dSHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
227598bc09dSHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
228598bc09dSHong Zhang   PetscFunctionReturn(0);
229598bc09dSHong Zhang }
230598bc09dSHong Zhang 
231598bc09dSHong Zhang #undef __FUNCT__
232598bc09dSHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ_new"
233598bc09dSHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_new(Mat A,Mat P,PetscReal fill,Mat *C)
234598bc09dSHong Zhang {
235598bc09dSHong Zhang   PetscErrorCode       ierr;
236598bc09dSHong Zhang   MPI_Comm             comm=((PetscObject)A)->comm;
237598bc09dSHong Zhang   PetscMPIInt          size,rank;
238598bc09dSHong Zhang   Mat                  B_mpi;
239598bc09dSHong Zhang   Mat_PtAPMPI          *ptap;
240598bc09dSHong Zhang   PetscFreeSpaceList   free_space=PETSC_NULL,current_space=PETSC_NULL;
241598bc09dSHong Zhang   Mat_MPIAIJ           *a=(Mat_MPIAIJ*)A->data,*p=(Mat_MPIAIJ*)P->data,*c;
242598bc09dSHong Zhang   Mat_SeqAIJ           *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
243598bc09dSHong Zhang   Mat_SeqAIJ           *p_loc,*p_oth;
244598bc09dSHong Zhang   PetscInt             *pi_loc,*pj_loc,*pi_oth,*pj_oth,*pdti,*pdtj,*poti,*potj,*ptJ,*dnz,*onz;
245598bc09dSHong Zhang   PetscInt             *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,nnz,rstart=A->rmap->rstart;
246598bc09dSHong Zhang   PetscInt             nlnk,*lnk,*owners_co,*coi,*coj,i,k,pnz,row;
247598bc09dSHong Zhang   PetscInt             am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n;
248598bc09dSHong Zhang   PetscBT              lnkbt;
249598bc09dSHong Zhang   PetscInt             nzi,*bi,*bj;
250598bc09dSHong Zhang   PetscInt             *api,*apj,*Jptr,apnz,*prmap=p->garray,pon,nspacedouble=0,j;
251598bc09dSHong Zhang   PetscScalar          *apa;
252598bc09dSHong Zhang 
253598bc09dSHong Zhang   PetscFunctionBegin;
254598bc09dSHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
255598bc09dSHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
256598bc09dSHong Zhang 
257598bc09dSHong Zhang   /* create struct Mat_PtAPMPI and attached it to C later */
258598bc09dSHong Zhang   ierr = PetscNew(Mat_PtAPMPI,&ptap);CHKERRQ(ierr);
259598bc09dSHong Zhang   ptap->abnz_max = 0;
260598bc09dSHong Zhang   ptap->reuse    = MAT_INITIAL_MATRIX;
261598bc09dSHong Zhang 
262598bc09dSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
263598bc09dSHong Zhang   ierr = PetscMalloc((P->cmap->N)*sizeof(PetscScalar),&apa);CHKERRQ(ierr);
264598bc09dSHong Zhang   ierr = PetscMemzero(apa,P->cmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
265598bc09dSHong Zhang   ptap->apa = apa;
266598bc09dSHong Zhang 
267598bc09dSHong Zhang 
268598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
269598bc09dSHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj,&ptap->startsj_r,&ptap->bufa,&ptap->B_oth);CHKERRQ(ierr);
270598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
271598bc09dSHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->B_loc);CHKERRQ(ierr);
272598bc09dSHong Zhang 
273598bc09dSHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->B_loc)->data;
274598bc09dSHong Zhang   p_oth = (Mat_SeqAIJ*)(ptap->B_oth)->data;
275598bc09dSHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j;
276598bc09dSHong Zhang   pi_oth = p_oth->i; pj_oth = p_oth->j;
277598bc09dSHong Zhang 
278598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
279598bc09dSHong Zhang   /*-------------------------------------------------------------------*/
280598bc09dSHong Zhang   ierr  = PetscMalloc((am+2)*sizeof(PetscInt),&api);CHKERRQ(ierr);
281598bc09dSHong Zhang   ptap->abi = api;
282598bc09dSHong Zhang   api[0]    = 0;
283598bc09dSHong Zhang 
284598bc09dSHong Zhang   /* create and initialize a linked list */
285598bc09dSHong Zhang   nlnk = pN+1;
286598bc09dSHong Zhang   ierr = PetscLLCreate(pN,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr);
287598bc09dSHong Zhang 
288598bc09dSHong Zhang   /* Initial FreeSpace size is fill*nnz(A) */
289598bc09dSHong Zhang   ierr = PetscFreeSpaceGet((PetscInt)(fill*(adi[am]+aoi[am])),&free_space);CHKERRQ(ierr);
290598bc09dSHong Zhang   current_space = free_space;
291598bc09dSHong Zhang 
292598bc09dSHong Zhang   ierr = MatPreallocateInitialize(comm,am,pn,dnz,onz);CHKERRQ(ierr);
293598bc09dSHong Zhang   for (i=0;i<am;i++) {
294598bc09dSHong Zhang     apnz = 0;
295598bc09dSHong Zhang     /* diagonal portion of A */
296598bc09dSHong Zhang     nzi = adi[i+1] - adi[i];
297598bc09dSHong Zhang     for (j=0; j<nzi; j++){
298598bc09dSHong Zhang       row = *adj++;
299598bc09dSHong Zhang       pnz = pi_loc[row+1] - pi_loc[row];
300598bc09dSHong Zhang       Jptr  = pj_loc + pi_loc[row];
301598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
302598bc09dSHong Zhang       ierr = PetscLLAdd(pnz,Jptr,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr);
303598bc09dSHong Zhang       apnz += nlnk;
304598bc09dSHong Zhang     }
305598bc09dSHong Zhang     /* off-diagonal portion of A */
306598bc09dSHong Zhang     nzi = aoi[i+1] - aoi[i];
307598bc09dSHong Zhang     for (j=0; j<nzi; j++){
308598bc09dSHong Zhang       row = *aoj++;
309598bc09dSHong Zhang       pnz = pi_oth[row+1] - pi_oth[row];
310598bc09dSHong Zhang       Jptr  = pj_oth + pi_oth[row];
311598bc09dSHong Zhang       ierr = PetscLLAdd(pnz,Jptr,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr);
312598bc09dSHong Zhang       apnz += nlnk;
313598bc09dSHong Zhang     }
314598bc09dSHong Zhang 
315598bc09dSHong Zhang     api[i+1] = api[i] + apnz;
316598bc09dSHong Zhang     if (ptap->abnz_max < apnz) ptap->abnz_max = apnz;
317598bc09dSHong Zhang 
318598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
319598bc09dSHong Zhang     if (current_space->local_remaining<apnz) {
320598bc09dSHong Zhang       ierr = PetscFreeSpaceGet(apnz+current_space->total_array_size,&current_space);CHKERRQ(ierr);
321598bc09dSHong Zhang       nspacedouble++;
322598bc09dSHong Zhang     }
323598bc09dSHong Zhang 
324598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
325598bc09dSHong Zhang     ierr = PetscLLClean(pN,pN,apnz,lnk,current_space->array,lnkbt);CHKERRQ(ierr);
326598bc09dSHong Zhang     ierr = MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz);CHKERRQ(ierr);
327598bc09dSHong Zhang     current_space->array           += apnz;
328598bc09dSHong Zhang     current_space->local_used      += apnz;
329598bc09dSHong Zhang     current_space->local_remaining -= apnz;
330598bc09dSHong Zhang   }
331598bc09dSHong Zhang 
332598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
333598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
334598bc09dSHong Zhang   ierr = PetscMalloc((api[am]+1)*sizeof(PetscInt),&ptap->abj);CHKERRQ(ierr);
335598bc09dSHong Zhang   apj = ptap->abj;
336598bc09dSHong Zhang   ierr = PetscFreeSpaceContiguous(&free_space,ptap->abj);CHKERRQ(ierr);
337598bc09dSHong Zhang   ierr = PetscLLDestroy(lnk,lnkbt);CHKERRQ(ierr);
338598bc09dSHong Zhang 
339598bc09dSHong Zhang   /* create and assemble symbolic parallel matrix B_mpi */
340598bc09dSHong Zhang   /*----------------------------------------------------*/
341598bc09dSHong Zhang   ierr = MatCreate(comm,&B_mpi);CHKERRQ(ierr);
342598bc09dSHong Zhang   ierr = MatSetSizes(B_mpi,am,pn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
343598bc09dSHong Zhang   ierr = MatSetType(B_mpi,MATMPIAIJ);CHKERRQ(ierr);
344598bc09dSHong Zhang   ierr = MatMPIAIJSetPreallocation(B_mpi,0,dnz,0,onz);CHKERRQ(ierr);
345598bc09dSHong Zhang   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
346598bc09dSHong Zhang   ierr = MatSetBlockSize(B_mpi,1);CHKERRQ(ierr);
347598bc09dSHong Zhang   for (i=0; i<am; i++){
348598bc09dSHong Zhang     row = i + rstart;
349598bc09dSHong Zhang     apnz = api[i+1] - api[i];
350598bc09dSHong Zhang     ierr = MatSetValues(B_mpi,1,&row,apnz,apj,apa,INSERT_VALUES);CHKERRQ(ierr);
351598bc09dSHong Zhang     apj += apnz;
352598bc09dSHong Zhang   }
353598bc09dSHong Zhang   ierr = MatAssemblyBegin(B_mpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
354598bc09dSHong Zhang   ierr = MatAssemblyEnd(B_mpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
355598bc09dSHong Zhang   //ierr = MatView(B_mpi,PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
356598bc09dSHong Zhang 
357598bc09dSHong Zhang   ptap->destroy              = B_mpi->ops->destroy;
358598bc09dSHong Zhang   B_mpi->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_new;
359598bc09dSHong Zhang   B_mpi->ops->destroy        = MatDestroy_MPIAIJ_MatMatMult_new;
360598bc09dSHong Zhang 
361598bc09dSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
362598bc09dSHong Zhang   c = (Mat_MPIAIJ*)B_mpi->data;
363598bc09dSHong Zhang   c->ptap  = ptap;
364598bc09dSHong Zhang 
365598bc09dSHong Zhang   *C = B_mpi;
366598bc09dSHong Zhang   PetscFunctionReturn(0);
367598bc09dSHong Zhang }
368598bc09dSHong Zhang 
369598bc09dSHong Zhang #undef __FUNCT__
3702499ec78SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ"
3712499ec78SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A,Mat B,PetscReal fill,Mat *C)
3722499ec78SHong Zhang {
3732499ec78SHong Zhang   PetscErrorCode     ierr;
3742499ec78SHong Zhang   Mat_MatMatMultMPI  *mult;
375776b82aeSLisandro Dalcin   PetscContainer     container;
376d5821860SHong Zhang   Mat                AB,*seq;
377d5821860SHong Zhang   Mat_MPIAIJ         *a=(Mat_MPIAIJ*)A->data;
378d5821860SHong Zhang   PetscInt           *idx,i,start,ncols,nzA,nzB,*cmap,imark;
379598bc09dSHong Zhang   PetscBool          matmatmult_new=PETSC_FALSE;
3802499ec78SHong Zhang 
3812499ec78SHong Zhang   PetscFunctionBegin;
382d0f46423SBarry Smith   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend){
383e32f2f54SBarry Smith     SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap->rstart,A->cmap->rend,B->rmap->rstart,B->rmap->rend);
3842499ec78SHong Zhang   }
385598bc09dSHong Zhang   ierr = PetscOptionsGetBool(PETSC_NULL,"-matmatmult_new",&matmatmult_new,PETSC_NULL);CHKERRQ(ierr);
386598bc09dSHong Zhang   if (matmatmult_new){
387598bc09dSHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ_new(A,B,fill,C);;CHKERRQ(ierr);
388598bc09dSHong Zhang     PetscFunctionReturn(0);
389598bc09dSHong Zhang   }
390598bc09dSHong Zhang 
3912499ec78SHong Zhang   ierr = PetscNew(Mat_MatMatMultMPI,&mult);CHKERRQ(ierr);
3922499ec78SHong Zhang 
393d5821860SHong Zhang   /* get isrowb: nonzero col of A */
394d5821860SHong Zhang   start = A->cmap->rstart;
395d5821860SHong Zhang   cmap  = a->garray;
396d5821860SHong Zhang   nzA   = a->A->cmap->n;
397d5821860SHong Zhang   nzB   = a->B->cmap->n;
398d5821860SHong Zhang   ierr  = PetscMalloc((nzA+nzB)*sizeof(PetscInt), &idx);CHKERRQ(ierr);
399d5821860SHong Zhang   ncols = 0;
400d5821860SHong Zhang   for (i=0; i<nzB; i++) {  /* row < local row index */
401d5821860SHong Zhang     if (cmap[i] < start) idx[ncols++] = cmap[i];
402d5821860SHong Zhang     else break;
403d5821860SHong Zhang   }
404d5821860SHong Zhang   imark = i;
405d5821860SHong Zhang   for (i=0; i<nzA; i++) idx[ncols++] = start + i;  /* local rows */
406d5821860SHong Zhang   for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
407d5821860SHong Zhang   ierr = ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,PETSC_OWN_POINTER,&mult->isrowb);CHKERRQ(ierr);
408d5821860SHong Zhang   ierr = ISCreateStride(PETSC_COMM_SELF,B->cmap->N,0,1,&mult->iscolb);CHKERRQ(ierr);
409d5821860SHong Zhang 
410d5821860SHong Zhang   /*  get isrowa: all local rows of A */
411d5821860SHong Zhang   ierr = ISCreateStride(PETSC_COMM_SELF,A->rmap->n,A->rmap->rstart,1,&mult->isrowa);CHKERRQ(ierr);
412d5821860SHong Zhang 
413d5821860SHong Zhang   /* Below should go to MatMatMultNumeric_MPIAIJ_MPIAIJ() - How to generate C there? */
4142499ec78SHong Zhang   /* create a seq matrix B_seq = submatrix of B by taking rows of B that equal to nonzero col of A */
415d5821860SHong Zhang   ierr = MatGetSubMatrices(B,1,&mult->isrowb,&mult->iscolb,MAT_INITIAL_MATRIX,&seq);CHKERRQ(ierr);
416d5821860SHong Zhang   mult->B_seq = *seq;
417d5821860SHong Zhang   ierr = PetscFree(seq);CHKERRQ(ierr);
4182499ec78SHong Zhang 
4192499ec78SHong Zhang   /*  create a seq matrix A_seq = submatrix of A by taking all local rows of A */
420d5821860SHong Zhang   ierr = MatGetSubMatrices(A,1,&mult->isrowa,&mult->isrowb,MAT_INITIAL_MATRIX,&seq);CHKERRQ(ierr);
421d5821860SHong Zhang   mult->A_loc = *seq;
422d5821860SHong Zhang   ierr = PetscFree(seq);CHKERRQ(ierr);
4232499ec78SHong Zhang 
4242499ec78SHong Zhang   /* compute C_seq = A_seq * B_seq */
425*9b8102ccSHong Zhang   ierr = MatMatMultSymbolic_SeqAIJ_SeqAIJ(mult->A_loc,mult->B_seq,fill,&mult->C_seq);CHKERRQ(ierr);
426*9b8102ccSHong Zhang   ierr = MatMatMultNumeric_SeqAIJ_SeqAIJ(mult->A_loc,mult->B_seq,mult->C_seq);CHKERRQ(ierr);
4272499ec78SHong Zhang 
4282499ec78SHong Zhang   /* create mpi matrix C by concatinating C_seq */
4292499ec78SHong Zhang   ierr = PetscObjectReference((PetscObject)mult->C_seq);CHKERRQ(ierr); /* prevent C_seq being destroyed by MatMerge() */
430*9b8102ccSHong Zhang   ierr = MatMergeSymbolic(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,&AB);CHKERRQ(ierr);
431*9b8102ccSHong Zhang   ierr = MatMergeNumeric(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,AB);CHKERRQ(ierr);
4322499ec78SHong Zhang 
4332499ec78SHong Zhang   /* attach the supporting struct to C for reuse of symbolic C */
434776b82aeSLisandro Dalcin   ierr = PetscContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr);
435776b82aeSLisandro Dalcin   ierr = PetscContainerSetPointer(container,mult);CHKERRQ(ierr);
436776b82aeSLisandro Dalcin   ierr = PetscContainerSetUserDestroy(container,PetscContainerDestroy_Mat_MatMatMultMPI);CHKERRQ(ierr);
437d5821860SHong Zhang   ierr = PetscObjectCompose((PetscObject)AB,"Mat_MatMatMultMPI",(PetscObject)container);CHKERRQ(ierr);
438b160f555SLisandro Dalcin   ierr = PetscContainerDestroy(&container);CHKERRQ(ierr);
439d5821860SHong Zhang   mult->destroy      = AB->ops->destroy;
440d5821860SHong Zhang   mult->duplicate    = AB->ops->duplicate;
441598bc09dSHong Zhang   AB->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
442d5821860SHong Zhang   AB->ops->destroy        = MatDestroy_MPIAIJ_MatMatMult;
443d5821860SHong Zhang   AB->ops->duplicate      = MatDuplicate_MPIAIJ_MatMatMult;
4448cdbd757SHong Zhang   AB->ops->matmult        = MatMatMult_MPIAIJ_MPIAIJ;
445d5821860SHong Zhang   *C                      = AB;
4462499ec78SHong Zhang   PetscFunctionReturn(0);
4472499ec78SHong Zhang }
4482499ec78SHong Zhang 
4492499ec78SHong Zhang /* This routine is called ONLY in the case of reusing previously computed symbolic C */
4502499ec78SHong Zhang #undef __FUNCT__
4512499ec78SHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ"
4522499ec78SHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A,Mat B,Mat C)
4532499ec78SHong Zhang {
4542499ec78SHong Zhang   PetscErrorCode     ierr;
4552499ec78SHong Zhang   Mat                *seq;
4562499ec78SHong Zhang   Mat_MatMatMultMPI  *mult;
457776b82aeSLisandro Dalcin   PetscContainer     container;
4582499ec78SHong Zhang 
4592499ec78SHong Zhang   PetscFunctionBegin;
460f33d1a9aSHong Zhang   ierr = PetscObjectQuery((PetscObject)C,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr);
461bf0cc555SLisandro Dalcin   if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit");
462776b82aeSLisandro Dalcin   ierr  = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr);
4632499ec78SHong Zhang   seq = &mult->B_seq;
4642499ec78SHong Zhang   ierr = MatGetSubMatrices(B,1,&mult->isrowb,&mult->iscolb,MAT_REUSE_MATRIX,&seq);CHKERRQ(ierr);
4652499ec78SHong Zhang   mult->B_seq = *seq;
4662499ec78SHong Zhang 
4672499ec78SHong Zhang   seq = &mult->A_loc;
4682499ec78SHong Zhang   ierr = MatGetSubMatrices(A,1,&mult->isrowa,&mult->isrowb,MAT_REUSE_MATRIX,&seq);CHKERRQ(ierr);
4692499ec78SHong Zhang   mult->A_loc = *seq;
4702499ec78SHong Zhang 
471598bc09dSHong Zhang   ierr = MatMatMultNumeric_SeqAIJ_SeqAIJ_SparseAxpy(mult->A_loc,mult->B_seq,mult->C_seq);CHKERRQ(ierr);
4722499ec78SHong Zhang 
4732499ec78SHong Zhang   ierr = PetscObjectReference((PetscObject)mult->C_seq);CHKERRQ(ierr);
474d0f46423SBarry Smith   ierr = MatMerge(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr);
4752499ec78SHong Zhang   PetscFunctionReturn(0);
4762499ec78SHong Zhang }
4779123193aSHong Zhang 
4789123193aSHong Zhang #undef __FUNCT__
4799123193aSHong Zhang #define __FUNCT__ "MatMatMult_MPIAIJ_MPIDense"
4809123193aSHong Zhang PetscErrorCode MatMatMult_MPIAIJ_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
4819123193aSHong Zhang {
4829123193aSHong Zhang   PetscErrorCode ierr;
4839123193aSHong Zhang 
4849123193aSHong Zhang   PetscFunctionBegin;
4859123193aSHong Zhang   if (scall == MAT_INITIAL_MATRIX){
4869123193aSHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIDense(A,B,fill,C);CHKERRQ(ierr);
4879123193aSHong Zhang   }
4889123193aSHong Zhang   ierr = MatMatMultNumeric_MPIAIJ_MPIDense(A,B,*C);CHKERRQ(ierr);
4899123193aSHong Zhang   PetscFunctionReturn(0);
4909123193aSHong Zhang }
4919123193aSHong Zhang 
4924324174eSBarry Smith typedef struct {
4934324174eSBarry Smith   Mat         workB;
4944324174eSBarry Smith   PetscScalar *rvalues,*svalues;
4954324174eSBarry Smith   MPI_Request *rwaits,*swaits;
4964324174eSBarry Smith } MPIAIJ_MPIDense;
4974324174eSBarry Smith 
4987af9e4fdSHong Zhang #undef __FUNCT__
4997af9e4fdSHong Zhang #define __FUNCT__ "MPIAIJ_MPIDenseDestroy"
5004324174eSBarry Smith PetscErrorCode MPIAIJ_MPIDenseDestroy(void *ctx)
5014324174eSBarry Smith {
5024324174eSBarry Smith   MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense*) ctx;
5034324174eSBarry Smith   PetscErrorCode  ierr;
5044324174eSBarry Smith 
5054324174eSBarry Smith   PetscFunctionBegin;
5066bf464f9SBarry Smith   ierr = MatDestroy(&contents->workB);CHKERRQ(ierr);
5074324174eSBarry Smith   ierr = PetscFree4(contents->rvalues,contents->svalues,contents->rwaits,contents->swaits);CHKERRQ(ierr);
5084324174eSBarry Smith   ierr = PetscFree(contents);CHKERRQ(ierr);
5094324174eSBarry Smith   PetscFunctionReturn(0);
5104324174eSBarry Smith }
5114324174eSBarry Smith 
5129123193aSHong Zhang #undef __FUNCT__
5139123193aSHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIDense"
5149123193aSHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
5159123193aSHong Zhang {
5169123193aSHong Zhang   PetscErrorCode         ierr;
517f32d5d43SBarry Smith   Mat_MPIAIJ             *aij = (Mat_MPIAIJ*) A->data;
518d0f46423SBarry Smith   PetscInt               nz = aij->B->cmap->n;
519bf0cc555SLisandro Dalcin   PetscContainer         container;
5204324174eSBarry Smith   MPIAIJ_MPIDense        *contents;
5214324174eSBarry Smith   VecScatter             ctx = aij->Mvctx;
5224324174eSBarry Smith   VecScatter_MPI_General *from = (VecScatter_MPI_General*) ctx->fromdata;
5234324174eSBarry Smith   VecScatter_MPI_General *to   = ( VecScatter_MPI_General*) ctx->todata;
524d0f46423SBarry Smith   PetscInt               m=A->rmap->n,n=B->cmap->n;
5259123193aSHong Zhang 
5269123193aSHong Zhang   PetscFunctionBegin;
527cb2480eaSBarry Smith   ierr = MatCreate(((PetscObject)B)->comm,C);CHKERRQ(ierr);
528d0f46423SBarry Smith   ierr = MatSetSizes(*C,m,n,A->rmap->N,B->cmap->N);CHKERRQ(ierr);
529cb2480eaSBarry Smith   ierr = MatSetType(*C,MATMPIDENSE);CHKERRQ(ierr);
530cb2480eaSBarry Smith   ierr = MatAssemblyBegin(*C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
531cb2480eaSBarry Smith   ierr = MatAssemblyEnd(*C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
5328cdbd757SHong Zhang   (*C)->ops->matmult = MatMatMult_MPIAIJ_MPIDense;
533f32d5d43SBarry Smith 
5344324174eSBarry Smith   ierr = PetscNew(MPIAIJ_MPIDense,&contents);CHKERRQ(ierr);
535f32d5d43SBarry Smith   /* Create work matrix used to store off processor rows of B needed for local product */
536d0f46423SBarry Smith   ierr = MatCreateSeqDense(PETSC_COMM_SELF,nz,B->cmap->N,PETSC_NULL,&contents->workB);CHKERRQ(ierr);
5374324174eSBarry Smith   /* Create work arrays needed */
538d0f46423SBarry Smith   ierr = PetscMalloc4(B->cmap->N*from->starts[from->n],PetscScalar,&contents->rvalues,
539d0f46423SBarry Smith                       B->cmap->N*to->starts[to->n],PetscScalar,&contents->svalues,
5404324174eSBarry Smith                       from->n,MPI_Request,&contents->rwaits,
5414324174eSBarry Smith                       to->n,MPI_Request,&contents->swaits);CHKERRQ(ierr);
5424324174eSBarry Smith 
543bf0cc555SLisandro Dalcin   ierr = PetscContainerCreate(((PetscObject)A)->comm,&container);CHKERRQ(ierr);
544bf0cc555SLisandro Dalcin   ierr = PetscContainerSetPointer(container,contents);CHKERRQ(ierr);
545bf0cc555SLisandro Dalcin   ierr = PetscContainerSetUserDestroy(container,MPIAIJ_MPIDenseDestroy);CHKERRQ(ierr);
546bf0cc555SLisandro Dalcin   ierr = PetscObjectCompose((PetscObject)(*C),"workB",(PetscObject)container);CHKERRQ(ierr);
547bf0cc555SLisandro Dalcin   ierr = PetscContainerDestroy(&container);CHKERRQ(ierr);
5489123193aSHong Zhang   PetscFunctionReturn(0);
5499123193aSHong Zhang }
5509123193aSHong Zhang 
5517af9e4fdSHong Zhang #undef __FUNCT__
5527af9e4fdSHong Zhang #define __FUNCT__ "MatMPIDenseScatter"
553f32d5d43SBarry Smith /*
5542636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
5552636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
556f32d5d43SBarry Smith */
5574324174eSBarry Smith PetscErrorCode MatMPIDenseScatter(Mat A,Mat B,Mat C,Mat *outworkB)
558f32d5d43SBarry Smith {
559f32d5d43SBarry Smith   Mat_MPIAIJ             *aij = (Mat_MPIAIJ*)A->data;
560f32d5d43SBarry Smith   PetscErrorCode         ierr;
561f32d5d43SBarry Smith   PetscScalar            *b,*w,*svalues,*rvalues;
562f32d5d43SBarry Smith   VecScatter             ctx = aij->Mvctx;
563f32d5d43SBarry Smith   VecScatter_MPI_General *from = (VecScatter_MPI_General*) ctx->fromdata;
564f32d5d43SBarry Smith   VecScatter_MPI_General *to   = ( VecScatter_MPI_General*) ctx->todata;
565f32d5d43SBarry Smith   PetscInt               i,j,k;
566aa5bb8c0SSatish Balay   PetscInt               *sindices,*sstarts,*rindices,*rstarts;
567aa5bb8c0SSatish Balay   PetscMPIInt            *sprocs,*rprocs,nrecvs;
568f32d5d43SBarry Smith   MPI_Request            *swaits,*rwaits;
5697adad957SLisandro Dalcin   MPI_Comm               comm = ((PetscObject)A)->comm;
570d0f46423SBarry Smith   PetscMPIInt            tag = ((PetscObject)ctx)->tag,ncols = B->cmap->N, nrows = aij->B->cmap->n,imdex,nrowsB = B->rmap->n;
571f32d5d43SBarry Smith   MPI_Status             status;
5724324174eSBarry Smith   MPIAIJ_MPIDense        *contents;
573bf0cc555SLisandro Dalcin   PetscContainer         container;
5744324174eSBarry Smith   Mat                    workB;
575f32d5d43SBarry Smith 
576f32d5d43SBarry Smith   PetscFunctionBegin;
577bf0cc555SLisandro Dalcin   ierr = PetscObjectQuery((PetscObject)C,"workB",(PetscObject*)&container);CHKERRQ(ierr);
578bf0cc555SLisandro Dalcin   if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit");
579bf0cc555SLisandro Dalcin   ierr = PetscContainerGetPointer(container,(void**)&contents);CHKERRQ(ierr);
5804324174eSBarry Smith 
5814324174eSBarry Smith   workB = *outworkB = contents->workB;
582e32f2f54SBarry Smith   if (nrows != workB->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Number of rows of workB %D not equal to columns of aij->B %D",nrows,workB->cmap->n);
583f32d5d43SBarry Smith   sindices  = to->indices;
584f32d5d43SBarry Smith   sstarts   = to->starts;
585f32d5d43SBarry Smith   sprocs    = to->procs;
5864324174eSBarry Smith   swaits    = contents->swaits;
5874324174eSBarry Smith   svalues   = contents->svalues;
588f32d5d43SBarry Smith 
589f32d5d43SBarry Smith   rindices  = from->indices;
590f32d5d43SBarry Smith   rstarts   = from->starts;
591f32d5d43SBarry Smith   rprocs    = from->procs;
5924324174eSBarry Smith   rwaits    = contents->rwaits;
5934324174eSBarry Smith   rvalues   = contents->rvalues;
594f32d5d43SBarry Smith 
595f32d5d43SBarry Smith   ierr = MatGetArray(B,&b);CHKERRQ(ierr);
596f32d5d43SBarry Smith   ierr = MatGetArray(workB,&w);CHKERRQ(ierr);
597f32d5d43SBarry Smith 
598f32d5d43SBarry Smith   for (i=0; i<from->n; i++) {
599f32d5d43SBarry Smith     ierr = MPI_Irecv(rvalues+ncols*rstarts[i],ncols*(rstarts[i+1]-rstarts[i]),MPIU_SCALAR,rprocs[i],tag,comm,rwaits+i);CHKERRQ(ierr);
600f32d5d43SBarry Smith   }
601f32d5d43SBarry Smith 
602f32d5d43SBarry Smith   for (i=0; i<to->n; i++) {
603f32d5d43SBarry Smith     /* pack a message at a time */
604f32d5d43SBarry Smith     CHKMEMQ;
605f32d5d43SBarry Smith     for (j=0; j<sstarts[i+1]-sstarts[i]; j++){
606f32d5d43SBarry Smith       for (k=0; k<ncols; k++) {
607f32d5d43SBarry Smith         svalues[ncols*(sstarts[i] + j) + k] = b[sindices[sstarts[i]+j] + nrowsB*k];
6082636ff26SBarry Smith       }
6092636ff26SBarry Smith     }
610f32d5d43SBarry Smith     CHKMEMQ;
611f32d5d43SBarry Smith     ierr = MPI_Isend(svalues+ncols*sstarts[i],ncols*(sstarts[i+1]-sstarts[i]),MPIU_SCALAR,sprocs[i],tag,comm,swaits+i);CHKERRQ(ierr);
612f32d5d43SBarry Smith   }
6132636ff26SBarry Smith 
614f32d5d43SBarry Smith   nrecvs = from->n;
615f32d5d43SBarry Smith   while (nrecvs) {
616f32d5d43SBarry Smith     ierr = MPI_Waitany(from->n,rwaits,&imdex,&status);CHKERRQ(ierr);
617f32d5d43SBarry Smith     nrecvs--;
618f32d5d43SBarry Smith     /* unpack a message at a time */
619f32d5d43SBarry Smith     CHKMEMQ;
620f32d5d43SBarry Smith     for (j=0; j<rstarts[imdex+1]-rstarts[imdex]; j++){
621f32d5d43SBarry Smith       for (k=0; k<ncols; k++) {
622f32d5d43SBarry Smith         w[rindices[rstarts[imdex]+j] + nrows*k] = rvalues[ncols*(rstarts[imdex] + j) + k];
6232636ff26SBarry Smith       }
6242636ff26SBarry Smith     }
625f32d5d43SBarry Smith     CHKMEMQ;
626f32d5d43SBarry Smith   }
627cb9801acSJed Brown   if (to->n) {ierr = MPI_Waitall(to->n,swaits,to->sstatus);CHKERRQ(ierr);}
628f32d5d43SBarry Smith 
629f32d5d43SBarry Smith   ierr = MatRestoreArray(B,&b);CHKERRQ(ierr);
630f32d5d43SBarry Smith   ierr = MatRestoreArray(workB,&w);CHKERRQ(ierr);
631f32d5d43SBarry Smith   ierr = MatAssemblyBegin(workB,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
632f32d5d43SBarry Smith   ierr = MatAssemblyEnd(workB,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
633f32d5d43SBarry Smith   PetscFunctionReturn(0);
634f32d5d43SBarry Smith }
635f32d5d43SBarry Smith extern PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat,Mat,Mat);
636f32d5d43SBarry Smith 
6379123193aSHong Zhang #undef __FUNCT__
6389123193aSHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIDense"
6399123193aSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A,Mat B,Mat C)
6409123193aSHong Zhang {
6419123193aSHong Zhang   PetscErrorCode       ierr;
642f32d5d43SBarry Smith   Mat_MPIAIJ           *aij = (Mat_MPIAIJ*)A->data;
643f32d5d43SBarry Smith   Mat_MPIDense         *bdense = (Mat_MPIDense*)B->data;
644f32d5d43SBarry Smith   Mat_MPIDense         *cdense = (Mat_MPIDense*)C->data;
645f32d5d43SBarry Smith   Mat                  workB;
6469123193aSHong Zhang 
6479123193aSHong Zhang   PetscFunctionBegin;
6489123193aSHong Zhang 
649f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B*/
650f32d5d43SBarry Smith   ierr = MatMatMultNumeric_SeqAIJ_SeqDense(aij->A,bdense->A,cdense->A);CHKERRQ(ierr);
651f32d5d43SBarry Smith 
652f32d5d43SBarry Smith   /* get off processor parts of B needed to complete the product */
6534324174eSBarry Smith   ierr = MatMPIDenseScatter(A,B,C,&workB);CHKERRQ(ierr);
654f32d5d43SBarry Smith 
655f32d5d43SBarry Smith   /* off-diagonal block of A times nonlocal rows of B */
656f32d5d43SBarry Smith   ierr = MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A);CHKERRQ(ierr);
6579123193aSHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6589123193aSHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6599123193aSHong Zhang   PetscFunctionReturn(0);
6609123193aSHong Zhang }
6619123193aSHong Zhang 
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