xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision 6291f5a62c1a72138444259bbe50ae182d7dae63)
1be1d678aSKris Buschelman 
22499ec78SHong Zhang /*
32499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
42499ec78SHong Zhang           C = A * B
52499ec78SHong Zhang */
6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
8c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
9c6db04a5SJed Brown #include <petscbt.h>
10c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
116291f5a6SHong Zhang /*
126291f5a6SHong Zhang #define DEBUG_MATMATMULT
136291f5a6SHong Zhang  */
142499ec78SHong Zhang #undef __FUNCT__
152499ec78SHong Zhang #define __FUNCT__ "MatMatMult_MPIAIJ_MPIAIJ"
162499ec78SHong Zhang PetscErrorCode MatMatMult_MPIAIJ_MPIAIJ(Mat A,Mat B,MatReuse scall,PetscReal fill, Mat *C)
172499ec78SHong Zhang {
182499ec78SHong Zhang   PetscErrorCode ierr;
192499ec78SHong Zhang 
202499ec78SHong Zhang   PetscFunctionBegin;
212499ec78SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
22598bc09dSHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
23a1a4e84aSHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C);CHKERRQ(ierr);
24598bc09dSHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
252499ec78SHong Zhang   }
26598bc09dSHong Zhang   ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
27598bc09dSHong Zhang   ierr = (*(*C)->ops->matmultnumeric)(A,B,*C);CHKERRQ(ierr);
28598bc09dSHong Zhang   ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
292499ec78SHong Zhang   PetscFunctionReturn(0);
302499ec78SHong Zhang }
312499ec78SHong Zhang 
32f33d1a9aSHong Zhang #undef __FUNCT__
33776b82aeSLisandro Dalcin #define __FUNCT__ "PetscContainerDestroy_Mat_MatMatMultMPI"
34776b82aeSLisandro Dalcin PetscErrorCode PetscContainerDestroy_Mat_MatMatMultMPI(void *ptr)
35f33d1a9aSHong Zhang {
36f33d1a9aSHong Zhang   PetscErrorCode       ierr;
379649163dSHong Zhang   Mat_MatMatMultMPI    *mult=(Mat_MatMatMultMPI*)ptr;
38f33d1a9aSHong Zhang 
39f33d1a9aSHong Zhang   PetscFunctionBegin;
406bf464f9SBarry Smith   ierr = ISDestroy(&mult->isrowa);CHKERRQ(ierr);
416bf464f9SBarry Smith   ierr = ISDestroy(&mult->isrowb);CHKERRQ(ierr);
426bf464f9SBarry Smith   ierr = ISDestroy(&mult->iscolb);CHKERRQ(ierr);
436bf464f9SBarry Smith   ierr = MatDestroy(&mult->C_seq);CHKERRQ(ierr);
446bf464f9SBarry Smith   ierr = MatDestroy(&mult->A_loc);CHKERRQ(ierr);
456bf464f9SBarry Smith   ierr = MatDestroy(&mult->B_seq);CHKERRQ(ierr);
46f33d1a9aSHong Zhang   ierr = PetscFree(mult);CHKERRQ(ierr);
47f33d1a9aSHong Zhang   PetscFunctionReturn(0);
48f33d1a9aSHong Zhang }
49f33d1a9aSHong Zhang 
50598bc09dSHong Zhang #undef __FUNCT__
51a1a4e84aSHong Zhang #define __FUNCT__ "MatDestroy_MPIAIJ_MatMatMult"
52a1a4e84aSHong Zhang PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(Mat A)
53598bc09dSHong Zhang {
54598bc09dSHong Zhang   PetscErrorCode ierr;
55598bc09dSHong Zhang   Mat_MPIAIJ     *a=(Mat_MPIAIJ*)A->data;
56598bc09dSHong Zhang   Mat_PtAPMPI    *ptap=a->ptap;
57598bc09dSHong Zhang 
58598bc09dSHong Zhang   PetscFunctionBegin;
59598bc09dSHong Zhang   ierr = PetscFree2(ptap->startsj,ptap->startsj_r);CHKERRQ(ierr);
60598bc09dSHong Zhang   ierr = PetscFree(ptap->bufa);CHKERRQ(ierr);
61a1a4e84aSHong Zhang   ierr = MatDestroy(&ptap->P_loc);CHKERRQ(ierr);
62a1a4e84aSHong Zhang   ierr = MatDestroy(&ptap->P_oth);CHKERRQ(ierr);
63a1a4e84aSHong Zhang   ierr = PetscFree(ptap->api);CHKERRQ(ierr);
64a1a4e84aSHong Zhang   ierr = PetscFree(ptap->apj);CHKERRQ(ierr);
65598bc09dSHong Zhang   ierr = PetscFree(ptap->apa);CHKERRQ(ierr);
66598bc09dSHong Zhang   ierr = ptap->destroy(A);CHKERRQ(ierr);
67598bc09dSHong Zhang   ierr = PetscFree(ptap);CHKERRQ(ierr);
68598bc09dSHong Zhang   PetscFunctionReturn(0);
69598bc09dSHong Zhang }
70598bc09dSHong Zhang 
712499ec78SHong Zhang #undef __FUNCT__
72a1a4e84aSHong Zhang #define __FUNCT__ "MatDestroy_MPIAIJ_MatMatMult_32"
73a1a4e84aSHong Zhang PetscErrorCode MatDestroy_MPIAIJ_MatMatMult_32(Mat A)
742499ec78SHong Zhang {
752499ec78SHong Zhang   PetscErrorCode     ierr;
76776b82aeSLisandro Dalcin   PetscContainer     container;
779649163dSHong Zhang   Mat_MatMatMultMPI  *mult=PETSC_NULL;
782499ec78SHong Zhang 
792499ec78SHong Zhang   PetscFunctionBegin;
809649163dSHong Zhang   ierr = PetscObjectQuery((PetscObject)A,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr);
81bf0cc555SLisandro Dalcin   if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit");
82776b82aeSLisandro Dalcin   ierr = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr);
83dce485f0SBarry Smith   A->ops->destroy   = mult->destroy;
84bf0cc555SLisandro Dalcin   A->ops->duplicate = mult->duplicate;
85bf0cc555SLisandro Dalcin   if (A->ops->destroy) {
86992edd73SBarry Smith     ierr = (*A->ops->destroy)(A);CHKERRQ(ierr);
87bf0cc555SLisandro Dalcin   }
88bf0cc555SLisandro Dalcin   ierr = PetscObjectCompose((PetscObject)A,"Mat_MatMatMultMPI",0);CHKERRQ(ierr);
892499ec78SHong Zhang   PetscFunctionReturn(0);
902499ec78SHong Zhang }
912499ec78SHong Zhang 
922499ec78SHong Zhang #undef __FUNCT__
93a1a4e84aSHong Zhang #define __FUNCT__ "MatDuplicate_MPIAIJ_MatMatMult_32"
94a1a4e84aSHong Zhang PetscErrorCode MatDuplicate_MPIAIJ_MatMatMult_32(Mat A, MatDuplicateOption op, Mat *M)
95b9c92825SBarry Smith {
96abf897f8SHong Zhang   PetscErrorCode     ierr;
97abf897f8SHong Zhang   Mat_MatMatMultMPI  *mult;
98776b82aeSLisandro Dalcin   PetscContainer     container;
99abf897f8SHong Zhang 
100abf897f8SHong Zhang   PetscFunctionBegin;
101abf897f8SHong Zhang   ierr = PetscObjectQuery((PetscObject)A,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr);
102bf0cc555SLisandro Dalcin   if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit");
103776b82aeSLisandro Dalcin   ierr  = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr);
1045c088420SHong Zhang   /* Note: the container is not duplicated, because it requires deep copying of
1055c088420SHong Zhang      several large data sets (see PetscContainerDestroy_Mat_MatMatMultMPI()).
1065c088420SHong Zhang      These data sets are only used for repeated calling of MatMatMultNumeric().
1075c088420SHong Zhang      *M is unlikely being used in this way. Thus we create *M with pure mpiaij format */
108dce485f0SBarry Smith   ierr = (*mult->duplicate)(A,op,M);CHKERRQ(ierr);
109dce485f0SBarry Smith   (*M)->ops->destroy   = mult->destroy;   /* = MatDestroy_MPIAIJ, *M doesn't duplicate A's container! */
110dce485f0SBarry Smith   (*M)->ops->duplicate = mult->duplicate; /* = MatDuplicate_MPIAIJ */
111abf897f8SHong Zhang   PetscFunctionReturn(0);
112abf897f8SHong Zhang }
113abf897f8SHong Zhang 
114abf897f8SHong Zhang #undef __FUNCT__
115a1a4e84aSHong Zhang #define __FUNCT__ "MatDuplicate_MPIAIJ_MatMatMult"
116a1a4e84aSHong Zhang PetscErrorCode MatDuplicate_MPIAIJ_MatMatMult(Mat A, MatDuplicateOption op, Mat *M)
1174ae0847bSHong Zhang {
1184ae0847bSHong Zhang   PetscErrorCode     ierr;
1194ae0847bSHong Zhang   Mat_MPIAIJ         *a=(Mat_MPIAIJ*)A->data;
1204ae0847bSHong Zhang   Mat_PtAPMPI        *ptap=a->ptap;
1214ae0847bSHong Zhang 
1224ae0847bSHong Zhang   PetscFunctionBegin;
1234ae0847bSHong Zhang   ierr = (*ptap->duplicate)(A,op,M);CHKERRQ(ierr);
1244ae0847bSHong Zhang   (*M)->ops->destroy   = ptap->destroy;   /* = MatDestroy_MPIAIJ, *M doesn't duplicate A's special structure! */
1254ae0847bSHong Zhang   (*M)->ops->duplicate = ptap->duplicate; /* = MatDuplicate_MPIAIJ */
1264ae0847bSHong Zhang   PetscFunctionReturn(0);
1274ae0847bSHong Zhang }
1284ae0847bSHong Zhang 
1294ae0847bSHong Zhang #undef __FUNCT__
130a1a4e84aSHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ"
131a1a4e84aSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A,Mat P,Mat C)
132598bc09dSHong Zhang {
133598bc09dSHong Zhang   PetscErrorCode     ierr;
1344ae0847bSHong Zhang   Mat_MPIAIJ         *a=(Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data;
135598bc09dSHong Zhang   Mat_SeqAIJ         *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
136598bc09dSHong Zhang   Mat_SeqAIJ         *cd=(Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data;
137598bc09dSHong Zhang   PetscInt           *adi=ad->i,*adj,*aoi=ao->i,*aoj;
138598bc09dSHong Zhang   PetscScalar        *ada,*aoa,*cda=cd->a,*coa=co->a;
139598bc09dSHong Zhang   Mat_SeqAIJ         *p_loc,*p_oth;
140598bc09dSHong Zhang   PetscInt           *pi_loc,*pj_loc,*pi_oth,*pj_oth,*pj;
141598bc09dSHong Zhang   PetscScalar        *pa_loc,*pa_oth,*pa,*apa,valtmp,*ca;
142598bc09dSHong Zhang   PetscInt           cm=C->rmap->n,anz,pnz;
143598bc09dSHong Zhang   Mat_PtAPMPI        *ptap=c->ptap;
14465a57a32SSean Farley   PetscInt           *api,*apj,*apJ,i,j,k,row;
1454ae0847bSHong Zhang   PetscInt           rstart=C->rmap->rstart,cstart=C->cmap->rstart;
146598bc09dSHong Zhang   PetscInt           cdnz,conz,k0,k1;
1477c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT)
1487c2e2f26SHong Zhang   PetscMPIInt        rank=a->rank;
1497c2e2f26SHong Zhang #endif
150598bc09dSHong Zhang 
151598bc09dSHong Zhang   PetscFunctionBegin;
1527c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT)
1537c2e2f26SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultNumeric_MPIAIJ_MPIAIJ()...\n",rank);
1547c2e2f26SHong Zhang #endif
1557c2e2f26SHong Zhang 
156a1a4e84aSHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
157598bc09dSHong Zhang   /*-----------------------------------------------------*/
158a1a4e84aSHong Zhang   /* update numerical values of P_oth and P_loc */
159a1a4e84aSHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
160a1a4e84aSHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
1616291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
1626291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] got P_oth and P_loc...\n",rank);
1636291f5a6SHong Zhang #endif
164598bc09dSHong Zhang 
165598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
166598bc09dSHong Zhang   /*----------------------------------------------------------*/
167598bc09dSHong Zhang   /* get data from symbolic products */
168a1a4e84aSHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
169a1a4e84aSHong Zhang   p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
170598bc09dSHong Zhang   pi_loc=p_loc->i; pj_loc=p_loc->j; pa_loc=p_loc->a;
171598bc09dSHong Zhang   pi_oth=p_oth->i; pj_oth=p_oth->j; pa_oth=p_oth->a;
172598bc09dSHong Zhang 
173598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
174598bc09dSHong Zhang   apa = ptap->apa;
175598bc09dSHong Zhang 
176598bc09dSHong Zhang   for (i=0; i<cm; i++) {
177598bc09dSHong Zhang     /* diagonal portion of A */
178598bc09dSHong Zhang     anz = adi[i+1] - adi[i];
179598bc09dSHong Zhang     adj = ad->j + adi[i];
180598bc09dSHong Zhang     ada = ad->a + adi[i];
181598bc09dSHong Zhang     for (j=0; j<anz; j++) {
182598bc09dSHong Zhang       row = adj[j];
183598bc09dSHong Zhang       pnz = pi_loc[row+1] - pi_loc[row];
184598bc09dSHong Zhang       pj  = pj_loc + pi_loc[row];
185598bc09dSHong Zhang       pa  = pa_loc + pi_loc[row];
186598bc09dSHong Zhang 
187598bc09dSHong Zhang       /* perform dense axpy */
188598bc09dSHong Zhang       valtmp = ada[j];
189598bc09dSHong Zhang       for (k=0; k<pnz; k++){
190598bc09dSHong Zhang         apa[pj[k]] += valtmp*pa[k];
191598bc09dSHong Zhang       }
192598bc09dSHong Zhang       ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr);
193598bc09dSHong Zhang     }
194598bc09dSHong Zhang 
195598bc09dSHong Zhang     /* off-diagonal portion of A */
196598bc09dSHong Zhang     anz = aoi[i+1] - aoi[i];
197598bc09dSHong Zhang     aoj = ao->j + aoi[i];
198598bc09dSHong Zhang     aoa = ao->a + aoi[i];
199598bc09dSHong Zhang     for (j=0; j<anz; j++) {
200598bc09dSHong Zhang       row = aoj[j];
201598bc09dSHong Zhang       pnz = pi_oth[row+1] - pi_oth[row];
202598bc09dSHong Zhang       pj  = pj_oth + pi_oth[row];
203598bc09dSHong Zhang       pa  = pa_oth + pi_oth[row];
204598bc09dSHong Zhang 
205598bc09dSHong Zhang       /* perform dense axpy */
206598bc09dSHong Zhang       valtmp = aoa[j];
207598bc09dSHong Zhang       for (k=0; k<pnz; k++){
208598bc09dSHong Zhang         apa[pj[k]] += valtmp*pa[k];
209598bc09dSHong Zhang       }
210598bc09dSHong Zhang       ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr);
211598bc09dSHong Zhang     }
212598bc09dSHong Zhang 
213598bc09dSHong Zhang     /* set values in C */
214598bc09dSHong Zhang     row = rstart + i;
215a1a4e84aSHong Zhang     api = ptap->api;
216a1a4e84aSHong Zhang     apj = ptap->apj;
217598bc09dSHong Zhang     apJ = apj + api[i];
218598bc09dSHong Zhang     cdnz = cd->i[i+1] - cd->i[i];
219598bc09dSHong Zhang     conz = co->i[i+1] - co->i[i];
220598bc09dSHong Zhang 
221598bc09dSHong Zhang     /* 1st off-diagoanl part of C */
222598bc09dSHong Zhang     ca = coa + co->i[i];
223598bc09dSHong Zhang     k  = 0;
224598bc09dSHong Zhang     for (k0=0; k0<conz; k0++){
225598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
226598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
227598bc09dSHong Zhang       apa[apJ[k]] = 0.0;
228598bc09dSHong Zhang       k++;
229598bc09dSHong Zhang     }
230598bc09dSHong Zhang 
231598bc09dSHong Zhang     /* diagonal part of C */
232598bc09dSHong Zhang     ca = cda + cd->i[i];
233598bc09dSHong Zhang     for (k1=0; k1<cdnz; k1++){
234598bc09dSHong Zhang       ca[k1]      = apa[apJ[k]];
235598bc09dSHong Zhang       apa[apJ[k]] = 0.0;
236598bc09dSHong Zhang       k++;
237598bc09dSHong Zhang     }
238598bc09dSHong Zhang 
239598bc09dSHong Zhang     /* 2nd off-diagoanl part of C */
240598bc09dSHong Zhang     ca = coa + co->i[i];
241598bc09dSHong Zhang     for (; k0<conz; k0++){
242598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
243598bc09dSHong Zhang       apa[apJ[k]] = 0.0;
244598bc09dSHong Zhang       k++;
245598bc09dSHong Zhang     }
246598bc09dSHong Zhang   }
247598bc09dSHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
248598bc09dSHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2496291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
2506291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] exit MatMatMultNumeric_MPIAIJ_MPIAIJ()...\n",rank);
2516291f5a6SHong Zhang #endif
252598bc09dSHong Zhang   PetscFunctionReturn(0);
253598bc09dSHong Zhang }
254598bc09dSHong Zhang 
255598bc09dSHong Zhang #undef __FUNCT__
256a1a4e84aSHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ"
257a1a4e84aSHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A,Mat P,PetscReal fill,Mat *C)
258598bc09dSHong Zhang {
259598bc09dSHong Zhang   PetscErrorCode       ierr;
260598bc09dSHong Zhang   MPI_Comm             comm=((PetscObject)A)->comm;
261bfcd1a73SHong Zhang   Mat                  Cmpi;
262598bc09dSHong Zhang   Mat_PtAPMPI          *ptap;
263598bc09dSHong Zhang   PetscFreeSpaceList   free_space=PETSC_NULL,current_space=PETSC_NULL;
2644ae0847bSHong Zhang   Mat_MPIAIJ           *a=(Mat_MPIAIJ*)A->data,*c;
265bfcd1a73SHong Zhang   Mat_SeqAIJ           *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth;
2664ae0847bSHong Zhang   PetscInt             *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz;
2674ae0847bSHong Zhang   PetscInt             *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart;
268bfcd1a73SHong Zhang   PetscInt             nlnk,*lnk,i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi;
269bfcd1a73SHong Zhang   PetscInt             am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n;
270598bc09dSHong Zhang   PetscBT              lnkbt;
271598bc09dSHong Zhang   PetscScalar          *apa;
272bfcd1a73SHong Zhang   PetscReal            afill;
273a1a4e84aSHong Zhang   PetscBool            matmatmult_old=PETSC_FALSE;
2747c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT)
2757c2e2f26SHong Zhang   PetscMPIInt          rank=a->rank;
2767c2e2f26SHong Zhang #endif
277598bc09dSHong Zhang 
278598bc09dSHong Zhang   PetscFunctionBegin;
279a1a4e84aSHong Zhang   if (A->cmap->rstart != P->rmap->rstart || A->cmap->rend != P->rmap->rend){
280a1a4e84aSHong Zhang     SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap->rstart,A->cmap->rend,P->rmap->rstart,P->rmap->rend);
281a1a4e84aSHong Zhang   }
282a1a4e84aSHong Zhang   ierr = PetscOptionsGetBool(PETSC_NULL,"-matmatmult_old",&matmatmult_old,PETSC_NULL);CHKERRQ(ierr);
283a1a4e84aSHong Zhang   if (matmatmult_old){
284a1a4e84aSHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ_32(A,P,fill,C);;CHKERRQ(ierr);
285a1a4e84aSHong Zhang     PetscFunctionReturn(0);
286a1a4e84aSHong Zhang   }
287a1a4e84aSHong Zhang 
2887c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT)
2897c2e2f26SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultSymbolic_MPIAIJ_MPIAIJ()...\n",rank);
2907c2e2f26SHong Zhang #endif
2917c2e2f26SHong Zhang 
292598bc09dSHong Zhang   /* create struct Mat_PtAPMPI and attached it to C later */
293598bc09dSHong Zhang   ierr = PetscNew(Mat_PtAPMPI,&ptap);CHKERRQ(ierr);
294598bc09dSHong Zhang 
295598bc09dSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
296bfcd1a73SHong Zhang   ierr = PetscMalloc(pN*sizeof(PetscScalar),&apa);CHKERRQ(ierr);
297bfcd1a73SHong Zhang   ierr = PetscMemzero(apa,pN*sizeof(PetscScalar));CHKERRQ(ierr);
298598bc09dSHong Zhang   ptap->apa = apa;
2996291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
3006291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] Malloc apa is done...\n",rank);
3016291f5a6SHong Zhang #endif
302598bc09dSHong Zhang 
303598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
304a1a4e84aSHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
3056291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
3066291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] P_oth is done...\n",rank);
3076291f5a6SHong Zhang #endif
308598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
309a1a4e84aSHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
310598bc09dSHong Zhang 
311a1a4e84aSHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
312a1a4e84aSHong Zhang   p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
313598bc09dSHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j;
314598bc09dSHong Zhang   pi_oth = p_oth->i; pj_oth = p_oth->j;
315598bc09dSHong Zhang 
3166291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
3176291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] P_loc is done...\n",rank);
3186291f5a6SHong Zhang #endif
3196291f5a6SHong Zhang 
320598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
321598bc09dSHong Zhang   /*-------------------------------------------------------------------*/
322598bc09dSHong Zhang   ierr  = PetscMalloc((am+2)*sizeof(PetscInt),&api);CHKERRQ(ierr);
323a1a4e84aSHong Zhang   ptap->api = api;
324598bc09dSHong Zhang   api[0]    = 0;
325598bc09dSHong Zhang 
326598bc09dSHong Zhang   /* create and initialize a linked list */
327598bc09dSHong Zhang   nlnk = pN+1;
328598bc09dSHong Zhang   ierr = PetscLLCreate(pN,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr);
329598bc09dSHong Zhang 
330bfcd1a73SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
331bfcd1a73SHong Zhang   ierr = PetscFreeSpaceGet((PetscInt)(fill*(adi[am]+aoi[am]+pi_loc[pm])),&free_space);CHKERRQ(ierr);
332598bc09dSHong Zhang   current_space = free_space;
333598bc09dSHong Zhang 
334598bc09dSHong Zhang   ierr = MatPreallocateInitialize(comm,am,pn,dnz,onz);CHKERRQ(ierr);
335598bc09dSHong Zhang   for (i=0; i<am; i++) {
336598bc09dSHong Zhang     apnz = 0;
337598bc09dSHong Zhang     /* diagonal portion of A */
338598bc09dSHong Zhang     nzi = adi[i+1] - adi[i];
339598bc09dSHong Zhang     for (j=0; j<nzi; j++){
340598bc09dSHong Zhang       row = *adj++;
341598bc09dSHong Zhang       pnz = pi_loc[row+1] - pi_loc[row];
342598bc09dSHong Zhang       Jptr  = pj_loc + pi_loc[row];
343598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
344dadf0e6bSHong Zhang       ierr = PetscLLAddSorted(pnz,Jptr,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr);
345598bc09dSHong Zhang       apnz += nlnk;
346598bc09dSHong Zhang     }
347598bc09dSHong Zhang     /* off-diagonal portion of A */
348598bc09dSHong Zhang     nzi = aoi[i+1] - aoi[i];
349598bc09dSHong Zhang     for (j=0; j<nzi; j++){
350598bc09dSHong Zhang       row = *aoj++;
351598bc09dSHong Zhang       pnz = pi_oth[row+1] - pi_oth[row];
352598bc09dSHong Zhang       Jptr  = pj_oth + pi_oth[row];
353dadf0e6bSHong Zhang       ierr = PetscLLAddSorted(pnz,Jptr,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr);
354598bc09dSHong Zhang       apnz += nlnk;
355598bc09dSHong Zhang     }
356598bc09dSHong Zhang 
357598bc09dSHong Zhang     api[i+1] = api[i] + apnz;
358598bc09dSHong Zhang 
359598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
360598bc09dSHong Zhang     if (current_space->local_remaining<apnz) {
361598bc09dSHong Zhang       ierr = PetscFreeSpaceGet(apnz+current_space->total_array_size,&current_space);CHKERRQ(ierr);
362598bc09dSHong Zhang       nspacedouble++;
363598bc09dSHong Zhang     }
364598bc09dSHong Zhang 
365598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
366598bc09dSHong Zhang     ierr = PetscLLClean(pN,pN,apnz,lnk,current_space->array,lnkbt);CHKERRQ(ierr);
367598bc09dSHong Zhang     ierr = MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz);CHKERRQ(ierr);
368598bc09dSHong Zhang     current_space->array           += apnz;
369598bc09dSHong Zhang     current_space->local_used      += apnz;
370598bc09dSHong Zhang     current_space->local_remaining -= apnz;
371598bc09dSHong Zhang   }
372598bc09dSHong Zhang 
373598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
374598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
375a1a4e84aSHong Zhang   ierr = PetscMalloc((api[am]+1)*sizeof(PetscInt),&ptap->apj);CHKERRQ(ierr);
376a1a4e84aSHong Zhang   apj  = ptap->apj;
377a1a4e84aSHong Zhang   ierr = PetscFreeSpaceContiguous(&free_space,ptap->apj);CHKERRQ(ierr);
378598bc09dSHong Zhang   ierr = PetscLLDestroy(lnk,lnkbt);CHKERRQ(ierr);
3796291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
3806291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] AP is done...\n",rank);
3816291f5a6SHong Zhang #endif
382598bc09dSHong Zhang 
383bfcd1a73SHong Zhang   /* create and assemble symbolic parallel matrix Cmpi */
384598bc09dSHong Zhang   /*----------------------------------------------------*/
385bfcd1a73SHong Zhang   ierr = MatCreate(comm,&Cmpi);CHKERRQ(ierr);
386bfcd1a73SHong Zhang   ierr = MatSetSizes(Cmpi,am,pn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
387bfcd1a73SHong Zhang   ierr = MatSetType(Cmpi,MATMPIAIJ);CHKERRQ(ierr);
388bfcd1a73SHong Zhang   ierr = MatMPIAIJSetPreallocation(Cmpi,0,dnz,0,onz);CHKERRQ(ierr);
389598bc09dSHong Zhang   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
390bfcd1a73SHong Zhang   ierr = MatSetBlockSize(Cmpi,1);CHKERRQ(ierr);
391598bc09dSHong Zhang   for (i=0; i<am; i++){
392598bc09dSHong Zhang     row  = i + rstart;
393598bc09dSHong Zhang     apnz = api[i+1] - api[i];
394bfcd1a73SHong Zhang     ierr = MatSetValues(Cmpi,1,&row,apnz,apj,apa,INSERT_VALUES);CHKERRQ(ierr);
395598bc09dSHong Zhang     apj += apnz;
396598bc09dSHong Zhang   }
397bfcd1a73SHong Zhang   ierr = MatAssemblyBegin(Cmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
398bfcd1a73SHong Zhang   ierr = MatAssemblyEnd(Cmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
399598bc09dSHong Zhang 
400bfcd1a73SHong Zhang   ptap->destroy             = Cmpi->ops->destroy;
401bfcd1a73SHong Zhang   ptap->duplicate           = Cmpi->ops->duplicate;
402bfcd1a73SHong Zhang   Cmpi->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
403bfcd1a73SHong Zhang   Cmpi->ops->destroy        = MatDestroy_MPIAIJ_MatMatMult;
404bfcd1a73SHong Zhang   Cmpi->ops->duplicate      = MatDuplicate_MPIAIJ_MatMatMult;
405598bc09dSHong Zhang 
406bfcd1a73SHong Zhang   /* attach the supporting struct to Cmpi for reuse */
407bfcd1a73SHong Zhang   c = (Mat_MPIAIJ*)Cmpi->data;
408598bc09dSHong Zhang   c->ptap  = ptap;
409598bc09dSHong Zhang 
410bfcd1a73SHong Zhang   *C = Cmpi;
411bfcd1a73SHong Zhang 
412bfcd1a73SHong Zhang   /* set MatInfo */
413bfcd1a73SHong Zhang   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]) + 1.e-5;
414bfcd1a73SHong Zhang   if (afill < 1.0) afill = 1.0;
415bfcd1a73SHong Zhang   Cmpi->info.mallocs           = nspacedouble;
416bfcd1a73SHong Zhang   Cmpi->info.fill_ratio_given  = fill;
417bfcd1a73SHong Zhang   Cmpi->info.fill_ratio_needed = afill;
418bfcd1a73SHong Zhang 
419bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
420bfcd1a73SHong Zhang   if (api[am]) {
421bfcd1a73SHong Zhang     ierr = PetscInfo3(Cmpi,"Reallocs %D; Fill ratio: given %G needed %G.\n",nspacedouble,fill,afill);CHKERRQ(ierr);
422bfcd1a73SHong Zhang     ierr = PetscInfo1(Cmpi,"Use MatMatMult(A,B,MatReuse,%G,&C) for best performance.;\n",afill);CHKERRQ(ierr);
423bfcd1a73SHong Zhang   } else {
424bfcd1a73SHong Zhang     ierr = PetscInfo(Cmpi,"Empty matrix product\n");CHKERRQ(ierr);
425bfcd1a73SHong Zhang   }
426bfcd1a73SHong Zhang #endif
4276291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
4286291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] exit MatMatMultSymbolic_MPIAIJ_MPIAIJ()...\n",rank);
4296291f5a6SHong Zhang #endif
430598bc09dSHong Zhang   PetscFunctionReturn(0);
431598bc09dSHong Zhang }
432598bc09dSHong Zhang 
433a1a4e84aSHong Zhang /* implementation used in PETSc-3.2 */
434a1a4e84aSHong Zhang /* This routine is called ONLY in the case of reusing previously computed symbolic C */
435598bc09dSHong Zhang #undef __FUNCT__
436a1a4e84aSHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ_32"
437a1a4e84aSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_32(Mat A,Mat B,Mat C)
438a1a4e84aSHong Zhang {
439a1a4e84aSHong Zhang   PetscErrorCode     ierr;
440a1a4e84aSHong Zhang   Mat                *seq;
441a1a4e84aSHong Zhang   Mat_MatMatMultMPI  *mult;
442a1a4e84aSHong Zhang   PetscContainer     container;
443a1a4e84aSHong Zhang 
444a1a4e84aSHong Zhang   PetscFunctionBegin;
44515f4e0f4SHong Zhang   ierr = PetscObjectQuery((PetscObject)C,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr);
44615f4e0f4SHong Zhang   if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit");
44715f4e0f4SHong Zhang   ierr  = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr);
44815f4e0f4SHong Zhang 
44915f4e0f4SHong Zhang   if (mult->skipNumeric){ /* first numeric product is done during symbolic product */
45015f4e0f4SHong Zhang     mult->skipNumeric = PETSC_FALSE;
45115f4e0f4SHong Zhang     PetscFunctionReturn(0);
45215f4e0f4SHong Zhang   }
4537c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT)
4547c2e2f26SHong Zhang   PetscMPIInt rank;
4557c2e2f26SHong Zhang   ierr = MPI_Comm_rank(((PetscObject)C)->comm,&rank);CHKERRQ(ierr);
4567c2e2f26SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultNumeric_MPIAIJ_MPIAIJ_32()...\n",rank);
4577c2e2f26SHong Zhang #endif
45815f4e0f4SHong Zhang 
459a1a4e84aSHong Zhang   seq = &mult->B_seq;
460a1a4e84aSHong Zhang   ierr = MatGetSubMatrices(B,1,&mult->isrowb,&mult->iscolb,MAT_REUSE_MATRIX,&seq);CHKERRQ(ierr);
461a1a4e84aSHong Zhang   mult->B_seq = *seq;
462a1a4e84aSHong Zhang 
463a1a4e84aSHong Zhang   seq = &mult->A_loc;
464a1a4e84aSHong Zhang   ierr = MatGetSubMatrices(A,1,&mult->isrowa,&mult->isrowb,MAT_REUSE_MATRIX,&seq);CHKERRQ(ierr);
465a1a4e84aSHong Zhang   mult->A_loc = *seq;
466a1a4e84aSHong Zhang 
467a1a4e84aSHong Zhang   ierr = MatMatMultNumeric_SeqAIJ_SeqAIJ_SparseAxpy(mult->A_loc,mult->B_seq,mult->C_seq);CHKERRQ(ierr);
468a1a4e84aSHong Zhang 
469a1a4e84aSHong Zhang   ierr = PetscObjectReference((PetscObject)mult->C_seq);CHKERRQ(ierr);
470a1a4e84aSHong Zhang   ierr = MatMerge(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr);
471a1a4e84aSHong Zhang   PetscFunctionReturn(0);
472a1a4e84aSHong Zhang }
473a1a4e84aSHong Zhang 
4747c2e2f26SHong Zhang /* numeric product is computed as well */
475a1a4e84aSHong Zhang #undef __FUNCT__
476a1a4e84aSHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ_32"
477a1a4e84aSHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_32(Mat A,Mat B,PetscReal fill,Mat *C)
4782499ec78SHong Zhang {
4792499ec78SHong Zhang   PetscErrorCode     ierr;
4802499ec78SHong Zhang   Mat_MatMatMultMPI  *mult;
481776b82aeSLisandro Dalcin   PetscContainer     container;
482d5821860SHong Zhang   Mat                AB,*seq;
483d5821860SHong Zhang   Mat_MPIAIJ         *a=(Mat_MPIAIJ*)A->data;
484d5821860SHong Zhang   PetscInt           *idx,i,start,ncols,nzA,nzB,*cmap,imark;
4857c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT)
4867c2e2f26SHong Zhang   PetscMPIInt          rank=a->rank;
4877c2e2f26SHong Zhang #endif
4882499ec78SHong Zhang 
4892499ec78SHong Zhang   PetscFunctionBegin;
4907c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT)
4917c2e2f26SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultSymbolic_MPIAIJ_MPIAIJ_32()...\n",rank);
4927c2e2f26SHong Zhang #endif
493d0f46423SBarry Smith   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend){
494e32f2f54SBarry Smith     SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap->rstart,A->cmap->rend,B->rmap->rstart,B->rmap->rend);
4952499ec78SHong Zhang   }
496598bc09dSHong Zhang 
4972499ec78SHong Zhang   ierr = PetscNew(Mat_MatMatMultMPI,&mult);CHKERRQ(ierr);
4982499ec78SHong Zhang 
499d5821860SHong Zhang   /* get isrowb: nonzero col of A */
500d5821860SHong Zhang   start = A->cmap->rstart;
501d5821860SHong Zhang   cmap  = a->garray;
502d5821860SHong Zhang   nzA   = a->A->cmap->n;
503d5821860SHong Zhang   nzB   = a->B->cmap->n;
504d5821860SHong Zhang   ierr  = PetscMalloc((nzA+nzB)*sizeof(PetscInt), &idx);CHKERRQ(ierr);
505d5821860SHong Zhang   ncols = 0;
506d5821860SHong Zhang   for (i=0; i<nzB; i++) {  /* row < local row index */
507d5821860SHong Zhang     if (cmap[i] < start) idx[ncols++] = cmap[i];
508d5821860SHong Zhang     else break;
509d5821860SHong Zhang   }
510d5821860SHong Zhang   imark = i;
511d5821860SHong Zhang   for (i=0; i<nzA; i++) idx[ncols++] = start + i;  /* local rows */
512d5821860SHong Zhang   for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
513d5821860SHong Zhang   ierr = ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,PETSC_OWN_POINTER,&mult->isrowb);CHKERRQ(ierr);
514d5821860SHong Zhang   ierr = ISCreateStride(PETSC_COMM_SELF,B->cmap->N,0,1,&mult->iscolb);CHKERRQ(ierr);
515d5821860SHong Zhang 
516d5821860SHong Zhang   /*  get isrowa: all local rows of A */
517d5821860SHong Zhang   ierr = ISCreateStride(PETSC_COMM_SELF,A->rmap->n,A->rmap->rstart,1,&mult->isrowa);CHKERRQ(ierr);
518d5821860SHong Zhang 
519d5821860SHong Zhang   /* Below should go to MatMatMultNumeric_MPIAIJ_MPIAIJ() - How to generate C there? */
5202499ec78SHong Zhang   /* create a seq matrix B_seq = submatrix of B by taking rows of B that equal to nonzero col of A */
521d5821860SHong Zhang   ierr = MatGetSubMatrices(B,1,&mult->isrowb,&mult->iscolb,MAT_INITIAL_MATRIX,&seq);CHKERRQ(ierr);
522d5821860SHong Zhang   mult->B_seq = *seq;
523d5821860SHong Zhang   ierr = PetscFree(seq);CHKERRQ(ierr);
5246291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
5256291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] B_seq is done...\n",rank);
5266291f5a6SHong Zhang #endif
5272499ec78SHong Zhang 
5282499ec78SHong Zhang   /*  create a seq matrix A_seq = submatrix of A by taking all local rows of A */
529d5821860SHong Zhang   ierr = MatGetSubMatrices(A,1,&mult->isrowa,&mult->isrowb,MAT_INITIAL_MATRIX,&seq);CHKERRQ(ierr);
530d5821860SHong Zhang   mult->A_loc = *seq;
531d5821860SHong Zhang   ierr = PetscFree(seq);CHKERRQ(ierr);
5326291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
5336291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] A_seq is done...\n",rank);
5346291f5a6SHong Zhang #endif
5352499ec78SHong Zhang 
5362499ec78SHong Zhang   /* compute C_seq = A_seq * B_seq */
537*9b8102ccSHong Zhang   ierr = MatMatMultSymbolic_SeqAIJ_SeqAIJ(mult->A_loc,mult->B_seq,fill,&mult->C_seq);CHKERRQ(ierr);
538*9b8102ccSHong Zhang   ierr = MatMatMultNumeric_SeqAIJ_SeqAIJ(mult->A_loc,mult->B_seq,mult->C_seq);CHKERRQ(ierr);
5396291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
5406291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] C_seq is done...\n",rank);
5416291f5a6SHong Zhang #endif
5422499ec78SHong Zhang 
5432499ec78SHong Zhang   /* create mpi matrix C by concatinating C_seq */
5442499ec78SHong Zhang   ierr = PetscObjectReference((PetscObject)mult->C_seq);CHKERRQ(ierr); /* prevent C_seq being destroyed by MatMerge() */
545*9b8102ccSHong Zhang   ierr = MatMergeSymbolic(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,&AB);CHKERRQ(ierr);
546*9b8102ccSHong Zhang   ierr = MatMergeNumeric(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,AB);CHKERRQ(ierr);
5476291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
5486291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] Merge is done...\n",rank);
5496291f5a6SHong Zhang #endif
5502499ec78SHong Zhang 
5512499ec78SHong Zhang   /* attach the supporting struct to C for reuse of symbolic C */
552776b82aeSLisandro Dalcin   ierr = PetscContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr);
553776b82aeSLisandro Dalcin   ierr = PetscContainerSetPointer(container,mult);CHKERRQ(ierr);
554776b82aeSLisandro Dalcin   ierr = PetscContainerSetUserDestroy(container,PetscContainerDestroy_Mat_MatMatMultMPI);CHKERRQ(ierr);
555d5821860SHong Zhang   ierr = PetscObjectCompose((PetscObject)AB,"Mat_MatMatMultMPI",(PetscObject)container);CHKERRQ(ierr);
556b160f555SLisandro Dalcin   ierr = PetscContainerDestroy(&container);CHKERRQ(ierr);
55715f4e0f4SHong Zhang   mult->skipNumeric  = PETSC_TRUE; /* a numeric product is done here */
558d5821860SHong Zhang   mult->destroy      = AB->ops->destroy;
559d5821860SHong Zhang   mult->duplicate    = AB->ops->duplicate;
560a1a4e84aSHong Zhang   AB->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_32;
561a1a4e84aSHong Zhang   AB->ops->destroy        = MatDestroy_MPIAIJ_MatMatMult_32;
562a1a4e84aSHong Zhang   AB->ops->duplicate      = MatDuplicate_MPIAIJ_MatMatMult_32;
5638cdbd757SHong Zhang   AB->ops->matmult        = MatMatMult_MPIAIJ_MPIAIJ;
564d5821860SHong Zhang   *C                      = AB;
5656291f5a6SHong Zhang #if defined(DEBUG_MATMATMULT)
5666291f5a6SHong Zhang   if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] exit MatMatMultSymbolic_MPIAIJ_MPIAIJ_32()...\n",rank);
5676291f5a6SHong Zhang #endif
5682499ec78SHong Zhang   PetscFunctionReturn(0);
5692499ec78SHong Zhang }
5702499ec78SHong Zhang 
5719123193aSHong Zhang #undef __FUNCT__
5729123193aSHong Zhang #define __FUNCT__ "MatMatMult_MPIAIJ_MPIDense"
5739123193aSHong Zhang PetscErrorCode MatMatMult_MPIAIJ_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
5749123193aSHong Zhang {
5759123193aSHong Zhang   PetscErrorCode ierr;
5769123193aSHong Zhang 
5779123193aSHong Zhang   PetscFunctionBegin;
5789123193aSHong Zhang   if (scall == MAT_INITIAL_MATRIX){
5799123193aSHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIDense(A,B,fill,C);CHKERRQ(ierr);
5809123193aSHong Zhang   }
5819123193aSHong Zhang   ierr = MatMatMultNumeric_MPIAIJ_MPIDense(A,B,*C);CHKERRQ(ierr);
5829123193aSHong Zhang   PetscFunctionReturn(0);
5839123193aSHong Zhang }
5849123193aSHong Zhang 
5854324174eSBarry Smith typedef struct {
5864324174eSBarry Smith   Mat         workB;
5874324174eSBarry Smith   PetscScalar *rvalues,*svalues;
5884324174eSBarry Smith   MPI_Request *rwaits,*swaits;
5894324174eSBarry Smith } MPIAIJ_MPIDense;
5904324174eSBarry Smith 
5917af9e4fdSHong Zhang #undef __FUNCT__
5927af9e4fdSHong Zhang #define __FUNCT__ "MPIAIJ_MPIDenseDestroy"
5934324174eSBarry Smith PetscErrorCode MPIAIJ_MPIDenseDestroy(void *ctx)
5944324174eSBarry Smith {
5954324174eSBarry Smith   MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense*) ctx;
5964324174eSBarry Smith   PetscErrorCode  ierr;
5974324174eSBarry Smith 
5984324174eSBarry Smith   PetscFunctionBegin;
5996bf464f9SBarry Smith   ierr = MatDestroy(&contents->workB);CHKERRQ(ierr);
6004324174eSBarry Smith   ierr = PetscFree4(contents->rvalues,contents->svalues,contents->rwaits,contents->swaits);CHKERRQ(ierr);
6014324174eSBarry Smith   ierr = PetscFree(contents);CHKERRQ(ierr);
6024324174eSBarry Smith   PetscFunctionReturn(0);
6034324174eSBarry Smith }
6044324174eSBarry Smith 
6059123193aSHong Zhang #undef __FUNCT__
6069123193aSHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIDense"
6079123193aSHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
6089123193aSHong Zhang {
6099123193aSHong Zhang   PetscErrorCode         ierr;
610f32d5d43SBarry Smith   Mat_MPIAIJ             *aij = (Mat_MPIAIJ*) A->data;
611d0f46423SBarry Smith   PetscInt               nz = aij->B->cmap->n;
612bf0cc555SLisandro Dalcin   PetscContainer         container;
6134324174eSBarry Smith   MPIAIJ_MPIDense        *contents;
6144324174eSBarry Smith   VecScatter             ctx = aij->Mvctx;
6154324174eSBarry Smith   VecScatter_MPI_General *from = (VecScatter_MPI_General*) ctx->fromdata;
6164324174eSBarry Smith   VecScatter_MPI_General *to   = ( VecScatter_MPI_General*) ctx->todata;
617d0f46423SBarry Smith   PetscInt               m=A->rmap->n,n=B->cmap->n;
6189123193aSHong Zhang 
6199123193aSHong Zhang   PetscFunctionBegin;
620cb2480eaSBarry Smith   ierr = MatCreate(((PetscObject)B)->comm,C);CHKERRQ(ierr);
621d0f46423SBarry Smith   ierr = MatSetSizes(*C,m,n,A->rmap->N,B->cmap->N);CHKERRQ(ierr);
622cb2480eaSBarry Smith   ierr = MatSetType(*C,MATMPIDENSE);CHKERRQ(ierr);
623cb2480eaSBarry Smith   ierr = MatAssemblyBegin(*C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
624cb2480eaSBarry Smith   ierr = MatAssemblyEnd(*C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6258cdbd757SHong Zhang   (*C)->ops->matmult = MatMatMult_MPIAIJ_MPIDense;
626f32d5d43SBarry Smith 
6274324174eSBarry Smith   ierr = PetscNew(MPIAIJ_MPIDense,&contents);CHKERRQ(ierr);
628f32d5d43SBarry Smith   /* Create work matrix used to store off processor rows of B needed for local product */
629d0f46423SBarry Smith   ierr = MatCreateSeqDense(PETSC_COMM_SELF,nz,B->cmap->N,PETSC_NULL,&contents->workB);CHKERRQ(ierr);
6304324174eSBarry Smith   /* Create work arrays needed */
631d0f46423SBarry Smith   ierr = PetscMalloc4(B->cmap->N*from->starts[from->n],PetscScalar,&contents->rvalues,
632d0f46423SBarry Smith                       B->cmap->N*to->starts[to->n],PetscScalar,&contents->svalues,
6334324174eSBarry Smith                       from->n,MPI_Request,&contents->rwaits,
6344324174eSBarry Smith                       to->n,MPI_Request,&contents->swaits);CHKERRQ(ierr);
6354324174eSBarry Smith 
636bf0cc555SLisandro Dalcin   ierr = PetscContainerCreate(((PetscObject)A)->comm,&container);CHKERRQ(ierr);
637bf0cc555SLisandro Dalcin   ierr = PetscContainerSetPointer(container,contents);CHKERRQ(ierr);
638bf0cc555SLisandro Dalcin   ierr = PetscContainerSetUserDestroy(container,MPIAIJ_MPIDenseDestroy);CHKERRQ(ierr);
639bf0cc555SLisandro Dalcin   ierr = PetscObjectCompose((PetscObject)(*C),"workB",(PetscObject)container);CHKERRQ(ierr);
640bf0cc555SLisandro Dalcin   ierr = PetscContainerDestroy(&container);CHKERRQ(ierr);
6419123193aSHong Zhang   PetscFunctionReturn(0);
6429123193aSHong Zhang }
6439123193aSHong Zhang 
6447af9e4fdSHong Zhang #undef __FUNCT__
6457af9e4fdSHong Zhang #define __FUNCT__ "MatMPIDenseScatter"
646f32d5d43SBarry Smith /*
6472636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
6482636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
649f32d5d43SBarry Smith */
6504324174eSBarry Smith PetscErrorCode MatMPIDenseScatter(Mat A,Mat B,Mat C,Mat *outworkB)
651f32d5d43SBarry Smith {
652f32d5d43SBarry Smith   Mat_MPIAIJ             *aij = (Mat_MPIAIJ*)A->data;
653f32d5d43SBarry Smith   PetscErrorCode         ierr;
654f32d5d43SBarry Smith   PetscScalar            *b,*w,*svalues,*rvalues;
655f32d5d43SBarry Smith   VecScatter             ctx = aij->Mvctx;
656f32d5d43SBarry Smith   VecScatter_MPI_General *from = (VecScatter_MPI_General*) ctx->fromdata;
657f32d5d43SBarry Smith   VecScatter_MPI_General *to   = ( VecScatter_MPI_General*) ctx->todata;
658f32d5d43SBarry Smith   PetscInt               i,j,k;
659aa5bb8c0SSatish Balay   PetscInt               *sindices,*sstarts,*rindices,*rstarts;
660aa5bb8c0SSatish Balay   PetscMPIInt            *sprocs,*rprocs,nrecvs;
661f32d5d43SBarry Smith   MPI_Request            *swaits,*rwaits;
6627adad957SLisandro Dalcin   MPI_Comm               comm = ((PetscObject)A)->comm;
663d0f46423SBarry Smith   PetscMPIInt            tag = ((PetscObject)ctx)->tag,ncols = B->cmap->N, nrows = aij->B->cmap->n,imdex,nrowsB = B->rmap->n;
664f32d5d43SBarry Smith   MPI_Status             status;
6654324174eSBarry Smith   MPIAIJ_MPIDense        *contents;
666bf0cc555SLisandro Dalcin   PetscContainer         container;
6674324174eSBarry Smith   Mat                    workB;
668f32d5d43SBarry Smith 
669f32d5d43SBarry Smith   PetscFunctionBegin;
670bf0cc555SLisandro Dalcin   ierr = PetscObjectQuery((PetscObject)C,"workB",(PetscObject*)&container);CHKERRQ(ierr);
671bf0cc555SLisandro Dalcin   if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit");
672bf0cc555SLisandro Dalcin   ierr = PetscContainerGetPointer(container,(void**)&contents);CHKERRQ(ierr);
6734324174eSBarry Smith 
6744324174eSBarry Smith   workB = *outworkB = contents->workB;
675e32f2f54SBarry Smith   if (nrows != workB->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Number of rows of workB %D not equal to columns of aij->B %D",nrows,workB->cmap->n);
676f32d5d43SBarry Smith   sindices  = to->indices;
677f32d5d43SBarry Smith   sstarts   = to->starts;
678f32d5d43SBarry Smith   sprocs    = to->procs;
6794324174eSBarry Smith   swaits    = contents->swaits;
6804324174eSBarry Smith   svalues   = contents->svalues;
681f32d5d43SBarry Smith 
682f32d5d43SBarry Smith   rindices  = from->indices;
683f32d5d43SBarry Smith   rstarts   = from->starts;
684f32d5d43SBarry Smith   rprocs    = from->procs;
6854324174eSBarry Smith   rwaits    = contents->rwaits;
6864324174eSBarry Smith   rvalues   = contents->rvalues;
687f32d5d43SBarry Smith 
688f32d5d43SBarry Smith   ierr = MatGetArray(B,&b);CHKERRQ(ierr);
689f32d5d43SBarry Smith   ierr = MatGetArray(workB,&w);CHKERRQ(ierr);
690f32d5d43SBarry Smith 
691f32d5d43SBarry Smith   for (i=0; i<from->n; i++) {
692f32d5d43SBarry Smith     ierr = MPI_Irecv(rvalues+ncols*rstarts[i],ncols*(rstarts[i+1]-rstarts[i]),MPIU_SCALAR,rprocs[i],tag,comm,rwaits+i);CHKERRQ(ierr);
693f32d5d43SBarry Smith   }
694f32d5d43SBarry Smith 
695f32d5d43SBarry Smith   for (i=0; i<to->n; i++) {
696f32d5d43SBarry Smith     /* pack a message at a time */
697f32d5d43SBarry Smith     CHKMEMQ;
698f32d5d43SBarry Smith     for (j=0; j<sstarts[i+1]-sstarts[i]; j++){
699f32d5d43SBarry Smith       for (k=0; k<ncols; k++) {
700f32d5d43SBarry Smith         svalues[ncols*(sstarts[i] + j) + k] = b[sindices[sstarts[i]+j] + nrowsB*k];
7012636ff26SBarry Smith       }
7022636ff26SBarry Smith     }
703f32d5d43SBarry Smith     CHKMEMQ;
704f32d5d43SBarry Smith     ierr = MPI_Isend(svalues+ncols*sstarts[i],ncols*(sstarts[i+1]-sstarts[i]),MPIU_SCALAR,sprocs[i],tag,comm,swaits+i);CHKERRQ(ierr);
705f32d5d43SBarry Smith   }
7062636ff26SBarry Smith 
707f32d5d43SBarry Smith   nrecvs = from->n;
708f32d5d43SBarry Smith   while (nrecvs) {
709f32d5d43SBarry Smith     ierr = MPI_Waitany(from->n,rwaits,&imdex,&status);CHKERRQ(ierr);
710f32d5d43SBarry Smith     nrecvs--;
711f32d5d43SBarry Smith     /* unpack a message at a time */
712f32d5d43SBarry Smith     CHKMEMQ;
713f32d5d43SBarry Smith     for (j=0; j<rstarts[imdex+1]-rstarts[imdex]; j++){
714f32d5d43SBarry Smith       for (k=0; k<ncols; k++) {
715f32d5d43SBarry Smith         w[rindices[rstarts[imdex]+j] + nrows*k] = rvalues[ncols*(rstarts[imdex] + j) + k];
7162636ff26SBarry Smith       }
7172636ff26SBarry Smith     }
718f32d5d43SBarry Smith     CHKMEMQ;
719f32d5d43SBarry Smith   }
720cb9801acSJed Brown   if (to->n) {ierr = MPI_Waitall(to->n,swaits,to->sstatus);CHKERRQ(ierr);}
721f32d5d43SBarry Smith 
722f32d5d43SBarry Smith   ierr = MatRestoreArray(B,&b);CHKERRQ(ierr);
723f32d5d43SBarry Smith   ierr = MatRestoreArray(workB,&w);CHKERRQ(ierr);
724f32d5d43SBarry Smith   ierr = MatAssemblyBegin(workB,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
725f32d5d43SBarry Smith   ierr = MatAssemblyEnd(workB,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
726f32d5d43SBarry Smith   PetscFunctionReturn(0);
727f32d5d43SBarry Smith }
728f32d5d43SBarry Smith extern PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat,Mat,Mat);
729f32d5d43SBarry Smith 
7309123193aSHong Zhang #undef __FUNCT__
7319123193aSHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIDense"
7329123193aSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A,Mat B,Mat C)
7339123193aSHong Zhang {
7349123193aSHong Zhang   PetscErrorCode       ierr;
735f32d5d43SBarry Smith   Mat_MPIAIJ           *aij = (Mat_MPIAIJ*)A->data;
736f32d5d43SBarry Smith   Mat_MPIDense         *bdense = (Mat_MPIDense*)B->data;
737f32d5d43SBarry Smith   Mat_MPIDense         *cdense = (Mat_MPIDense*)C->data;
738f32d5d43SBarry Smith   Mat                  workB;
7399123193aSHong Zhang 
7409123193aSHong Zhang   PetscFunctionBegin;
7419123193aSHong Zhang 
742f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B*/
743f32d5d43SBarry Smith   ierr = MatMatMultNumeric_SeqAIJ_SeqDense(aij->A,bdense->A,cdense->A);CHKERRQ(ierr);
744f32d5d43SBarry Smith 
745f32d5d43SBarry Smith   /* get off processor parts of B needed to complete the product */
7464324174eSBarry Smith   ierr = MatMPIDenseScatter(A,B,C,&workB);CHKERRQ(ierr);
747f32d5d43SBarry Smith 
748f32d5d43SBarry Smith   /* off-diagonal block of A times nonlocal rows of B */
749f32d5d43SBarry Smith   ierr = MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A);CHKERRQ(ierr);
7509123193aSHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7519123193aSHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7529123193aSHong Zhang   PetscFunctionReturn(0);
7539123193aSHong Zhang }
7549123193aSHong Zhang 
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