xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision 65e4b4d46e77b7a054a0705b877751ea429d3d2b)
1be1d678aSKris Buschelman 
22499ec78SHong Zhang /*
32499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
42499ec78SHong Zhang           C = A * B
52499ec78SHong Zhang */
6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
8c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
9c6db04a5SJed Brown #include <petscbt.h>
10c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
11af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
1297929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
131634b032SHong Zhang 
145e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
154222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat,Mat,PetscReal,Mat);
165e5acdf2Sstefano_zampini #endif
175e5acdf2Sstefano_zampini 
184222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C)
192499ec78SHong Zhang {
202499ec78SHong Zhang   PetscErrorCode      ierr;
214222ddf1SHong Zhang   Mat_Product         *product = C->product;
224222ddf1SHong Zhang   Mat                 A=product->A,B=product->B;
234222ddf1SHong Zhang   MatProductAlgorithm alg=product->alg;
244222ddf1SHong Zhang   PetscReal           fill=product->fill;
255e68f438SHong Zhang   PetscBool           flg;
262499ec78SHong Zhang 
272499ec78SHong Zhang   PetscFunctionBegin;
284222ddf1SHong Zhang   /* scalable */
294222ddf1SHong Zhang   ierr = PetscStrcmp(alg,"scalable",&flg);CHKERRQ(ierr);
304222ddf1SHong Zhang   if (flg) {
31b2405163SHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C);CHKERRQ(ierr);
326718818eSStefano Zampini     PetscFunctionReturn(0);
330fc8cf34SHong Zhang   }
347d0a89b7SHong Zhang 
354222ddf1SHong Zhang   /* nonscalable */
364222ddf1SHong Zhang   ierr = PetscStrcmp(alg,"nonscalable",&flg);CHKERRQ(ierr);
374222ddf1SHong Zhang   if (flg) {
384222ddf1SHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A,B,fill,C);CHKERRQ(ierr);
396718818eSStefano Zampini     PetscFunctionReturn(0);
404222ddf1SHong Zhang   }
414222ddf1SHong Zhang 
424222ddf1SHong Zhang   /* seqmpi */
434222ddf1SHong Zhang   ierr = PetscStrcmp(alg,"seqmpi",&flg);CHKERRQ(ierr);
444222ddf1SHong Zhang   if (flg) {
454222ddf1SHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A,B,fill,C);CHKERRQ(ierr);
466718818eSStefano Zampini     PetscFunctionReturn(0);
474222ddf1SHong Zhang   }
484222ddf1SHong Zhang 
494e84afc0SStefano Zampini   /* backend general code */
504e84afc0SStefano Zampini   ierr = PetscStrcmp(alg,"backend",&flg);CHKERRQ(ierr);
514e84afc0SStefano Zampini   if (flg) {
524e84afc0SStefano Zampini     ierr = MatProductSymbolic_MPIAIJBACKEND(C);CHKERRQ(ierr);
534e84afc0SStefano Zampini     PetscFunctionReturn(0);
544e84afc0SStefano Zampini   }
554e84afc0SStefano Zampini 
564222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
574222ddf1SHong Zhang   ierr = PetscStrcmp(alg,"hypre",&flg);CHKERRQ(ierr);
584222ddf1SHong Zhang   if (flg) {
594222ddf1SHong Zhang     ierr = MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A,B,fill,C);CHKERRQ(ierr);
604222ddf1SHong Zhang     PetscFunctionReturn(0);
614222ddf1SHong Zhang   }
624222ddf1SHong Zhang #endif
634222ddf1SHong Zhang   SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"Mat Product Algorithm is not supported");
642499ec78SHong Zhang }
652499ec78SHong Zhang 
666718818eSStefano Zampini PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(void *data)
67598bc09dSHong Zhang {
68598bc09dSHong Zhang   PetscErrorCode ierr;
696718818eSStefano Zampini   Mat_APMPI      *ptap = (Mat_APMPI*)data;
70598bc09dSHong Zhang 
71598bc09dSHong Zhang   PetscFunctionBegin;
72b7f45c76SHong Zhang   ierr = PetscFree2(ptap->startsj_s,ptap->startsj_r);CHKERRQ(ierr);
73598bc09dSHong Zhang   ierr = PetscFree(ptap->bufa);CHKERRQ(ierr);
74a1a4e84aSHong Zhang   ierr = MatDestroy(&ptap->P_loc);CHKERRQ(ierr);
75a1a4e84aSHong Zhang   ierr = MatDestroy(&ptap->P_oth);CHKERRQ(ierr);
76ab1b013aSHong Zhang   ierr = MatDestroy(&ptap->Pt);CHKERRQ(ierr);
77a1a4e84aSHong Zhang   ierr = PetscFree(ptap->api);CHKERRQ(ierr);
78a1a4e84aSHong Zhang   ierr = PetscFree(ptap->apj);CHKERRQ(ierr);
79598bc09dSHong Zhang   ierr = PetscFree(ptap->apa);CHKERRQ(ierr);
80598bc09dSHong Zhang   ierr = PetscFree(ptap);CHKERRQ(ierr);
81598bc09dSHong Zhang   PetscFunctionReturn(0);
82598bc09dSHong Zhang }
83598bc09dSHong Zhang 
84f8efd71cSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A,Mat P,Mat C)
85598bc09dSHong Zhang {
86598bc09dSHong Zhang   PetscErrorCode    ierr;
874ae0847bSHong Zhang   Mat_MPIAIJ        *a  =(Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data;
88598bc09dSHong Zhang   Mat_SeqAIJ        *ad =(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
89598bc09dSHong Zhang   Mat_SeqAIJ        *cd =(Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data;
90c12557a1SHong Zhang   PetscScalar       *cda=cd->a,*coa=co->a;
91598bc09dSHong Zhang   Mat_SeqAIJ        *p_loc,*p_oth;
929ce11a7cSHong Zhang   PetscScalar       *apa,*ca;
93c12557a1SHong Zhang   PetscInt          cm =C->rmap->n;
946718818eSStefano Zampini   Mat_APMPI         *ptap;
95c12557a1SHong Zhang   PetscInt          *api,*apj,*apJ,i,k;
9629825010SHong Zhang   PetscInt          cstart=C->cmap->rstart;
97598bc09dSHong Zhang   PetscInt          cdnz,conz,k0,k1;
98ce496241SStefano Zampini   const PetscScalar *dummy;
999467f45fSHong Zhang   MPI_Comm          comm;
1009467f45fSHong Zhang   PetscMPIInt       size;
101598bc09dSHong Zhang 
102598bc09dSHong Zhang   PetscFunctionBegin;
1036718818eSStefano Zampini   MatCheckProduct(C,3);
1046718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
1056718818eSStefano Zampini   if (!ptap) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
1069467f45fSHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
107ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
1089467f45fSHong Zhang 
1096718818eSStefano Zampini   if (!ptap->P_oth && size>1) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"AP cannot be reused. Do not call MatProductClear()");
11080da8df7SHong Zhang 
111*65e4b4d4SStefano Zampini   /* flag CPU mask for C */
112*65e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
113*65e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
114*65e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
115*65e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
116*65e4b4d4SStefano Zampini #endif
117*65e4b4d4SStefano Zampini 
118a1a4e84aSHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
119598bc09dSHong Zhang   /*-----------------------------------------------------*/
120a1a4e84aSHong Zhang   /* update numerical values of P_oth and P_loc */
121b7f45c76SHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
122a1a4e84aSHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
123598bc09dSHong Zhang 
124598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
125598bc09dSHong Zhang   /*----------------------------------------------------------*/
126598bc09dSHong Zhang   /* get data from symbolic products */
127a1a4e84aSHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
128c12557a1SHong Zhang   p_oth = NULL;
1299467f45fSHong Zhang   if (size >1) {
1309467f45fSHong Zhang     p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
1319467f45fSHong Zhang   }
132598bc09dSHong Zhang 
133598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
134598bc09dSHong Zhang   apa = ptap->apa;
135598bc09dSHong Zhang 
13629825010SHong Zhang   api = ptap->api;
13729825010SHong Zhang   apj = ptap->apj;
138ce496241SStefano Zampini   /* trigger copy to CPU */
139ce496241SStefano Zampini   ierr = MatSeqAIJGetArrayRead(a->A,&dummy);CHKERRQ(ierr);
140ce496241SStefano Zampini   ierr = MatSeqAIJRestoreArrayRead(a->A,&dummy);CHKERRQ(ierr);
141ce496241SStefano Zampini   ierr = MatSeqAIJGetArrayRead(a->B,&dummy);CHKERRQ(ierr);
142ce496241SStefano Zampini   ierr = MatSeqAIJRestoreArrayRead(a->B,&dummy);CHKERRQ(ierr);
143598bc09dSHong Zhang   for (i=0; i<cm; i++) {
144c12557a1SHong Zhang     /* compute apa = A[i,:]*P */
145e497d3c8SHong Zhang     AProw_nonscalable(i,ad,ao,p_loc,p_oth,apa);
146598bc09dSHong Zhang 
147598bc09dSHong Zhang     /* set values in C */
148598bc09dSHong Zhang     apJ  = apj + api[i];
149598bc09dSHong Zhang     cdnz = cd->i[i+1] - cd->i[i];
150598bc09dSHong Zhang     conz = co->i[i+1] - co->i[i];
151598bc09dSHong Zhang 
152910cf402Sprj-     /* 1st off-diagonal part of C */
153598bc09dSHong Zhang     ca = coa + co->i[i];
154598bc09dSHong Zhang     k  = 0;
155598bc09dSHong Zhang     for (k0=0; k0<conz; k0++) {
156598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
157598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
1585cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
159598bc09dSHong Zhang     }
160598bc09dSHong Zhang 
161598bc09dSHong Zhang     /* diagonal part of C */
162598bc09dSHong Zhang     ca = cda + cd->i[i];
163598bc09dSHong Zhang     for (k1=0; k1<cdnz; k1++) {
164598bc09dSHong Zhang       ca[k1]      = apa[apJ[k]];
1655cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
166598bc09dSHong Zhang     }
167598bc09dSHong Zhang 
168910cf402Sprj-     /* 2nd off-diagonal part of C */
169598bc09dSHong Zhang     ca = coa + co->i[i];
170598bc09dSHong Zhang     for (; k0<conz; k0++) {
171598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
1725cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
173598bc09dSHong Zhang     }
174598bc09dSHong Zhang   }
175598bc09dSHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
176598bc09dSHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
177598bc09dSHong Zhang   PetscFunctionReturn(0);
178598bc09dSHong Zhang }
179598bc09dSHong Zhang 
1804222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A,Mat P,PetscReal fill,Mat C)
181598bc09dSHong Zhang {
182598bc09dSHong Zhang   PetscErrorCode     ierr;
183ce94432eSBarry Smith   MPI_Comm           comm;
1849467f45fSHong Zhang   PetscMPIInt        size;
1853cdca5ebSHong Zhang   Mat_APMPI          *ptap;
1860298fd71SBarry Smith   PetscFreeSpaceList free_space=NULL,current_space=NULL;
1876718818eSStefano Zampini   Mat_MPIAIJ         *a=(Mat_MPIAIJ*)A->data;
188bfcd1a73SHong Zhang   Mat_SeqAIJ         *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth;
1897dbaa2c6Sandi selinger   PetscInt           *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz;
1904ae0847bSHong Zhang   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart;
191d14fa243SHong Zhang   PetscInt           *lnk,i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi;
1925cab4f04SHong Zhang   PetscInt           am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n;
193598bc09dSHong Zhang   PetscBT            lnkbt;
194bfcd1a73SHong Zhang   PetscReal          afill;
195b92f168fSBarry Smith   MatType            mtype;
196598bc09dSHong Zhang 
197598bc09dSHong Zhang   PetscFunctionBegin;
1986718818eSStefano Zampini   MatCheckProduct(C,4);
1996718818eSStefano Zampini   if (C->product->data) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
200ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
201ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
2029467f45fSHong Zhang 
2033cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
204b00a9115SJed Brown   ierr = PetscNew(&ptap);CHKERRQ(ierr);
205598bc09dSHong Zhang 
206598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
207b7f45c76SHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
20819f0e57aSHong Zhang 
209598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
210a1a4e84aSHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
211598bc09dSHong Zhang 
212a1a4e84aSHong Zhang   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
213598bc09dSHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j;
2149467f45fSHong Zhang   if (size > 1) {
2159467f45fSHong Zhang     p_oth  = (Mat_SeqAIJ*)(ptap->P_oth)->data;
216598bc09dSHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j;
21720e3dc75SHong Zhang   } else {
21820e3dc75SHong Zhang     p_oth = NULL;
21920e3dc75SHong Zhang     pi_oth = NULL; pj_oth = NULL;
2209467f45fSHong Zhang   }
221598bc09dSHong Zhang 
222598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
223598bc09dSHong Zhang   /*-------------------------------------------------------------------*/
224854ce69bSBarry Smith   ierr      = PetscMalloc1(am+2,&api);CHKERRQ(ierr);
225a1a4e84aSHong Zhang   ptap->api = api;
226598bc09dSHong Zhang   api[0]    = 0;
227598bc09dSHong Zhang 
2285cab4f04SHong Zhang   /* create and initialize a linked list */
2295cab4f04SHong Zhang   ierr = PetscLLCondensedCreate(pN,pN,&lnk,&lnkbt);CHKERRQ(ierr);
230598bc09dSHong Zhang 
231bfcd1a73SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
232f91af8c7SBarry Smith   ierr = PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space);CHKERRQ(ierr);
233598bc09dSHong Zhang   current_space = free_space;
234598bc09dSHong Zhang 
235598bc09dSHong Zhang   ierr = MatPreallocateInitialize(comm,am,pn,dnz,onz);CHKERRQ(ierr);
236598bc09dSHong Zhang   for (i=0; i<am; i++) {
237598bc09dSHong Zhang     /* diagonal portion of A */
238598bc09dSHong Zhang     nzi = adi[i+1] - adi[i];
239598bc09dSHong Zhang     for (j=0; j<nzi; j++) {
240598bc09dSHong Zhang       row  = *adj++;
241598bc09dSHong Zhang       pnz  = pi_loc[row+1] - pi_loc[row];
242598bc09dSHong Zhang       Jptr = pj_loc + pi_loc[row];
243598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
2441fbbb359SHong Zhang       ierr = PetscLLCondensedAddSorted(pnz,Jptr,lnk,lnkbt);CHKERRQ(ierr);
245598bc09dSHong Zhang     }
246598bc09dSHong Zhang     /* off-diagonal portion of A */
247598bc09dSHong Zhang     nzi = aoi[i+1] - aoi[i];
248598bc09dSHong Zhang     for (j=0; j<nzi; j++) {
249598bc09dSHong Zhang       row  = *aoj++;
250598bc09dSHong Zhang       pnz  = pi_oth[row+1] - pi_oth[row];
251598bc09dSHong Zhang       Jptr = pj_oth + pi_oth[row];
2521fbbb359SHong Zhang       ierr = PetscLLCondensedAddSorted(pnz,Jptr,lnk,lnkbt);CHKERRQ(ierr);
253598bc09dSHong Zhang     }
2548c78258cSHong Zhang     /* add possible missing diagonal entry */
2558c78258cSHong Zhang     if (C->force_diagonals) {
2568c78258cSHong Zhang       j = i + rstart; /* column index */
2578c78258cSHong Zhang       ierr = PetscLLCondensedAddSorted(1,&j,lnk,lnkbt);CHKERRQ(ierr);
2588c78258cSHong Zhang     }
259598bc09dSHong Zhang 
260d14fa243SHong Zhang     apnz     = lnk[0];
261598bc09dSHong Zhang     api[i+1] = api[i] + apnz;
262598bc09dSHong Zhang 
263598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
264598bc09dSHong Zhang     if (current_space->local_remaining<apnz) {
265f91af8c7SBarry Smith       ierr = PetscFreeSpaceGet(PetscIntSumTruncate(apnz,current_space->total_array_size),&current_space);CHKERRQ(ierr);
266598bc09dSHong Zhang       nspacedouble++;
267598bc09dSHong Zhang     }
268598bc09dSHong Zhang 
269598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
2701fbbb359SHong Zhang     ierr = PetscLLCondensedClean(pN,apnz,current_space->array,lnk,lnkbt);CHKERRQ(ierr);
271598bc09dSHong Zhang     ierr = MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz);CHKERRQ(ierr);
2722205254eSKarl Rupp 
273598bc09dSHong Zhang     current_space->array           += apnz;
274598bc09dSHong Zhang     current_space->local_used      += apnz;
275598bc09dSHong Zhang     current_space->local_remaining -= apnz;
276598bc09dSHong Zhang   }
277598bc09dSHong Zhang 
278598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
279598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
280854ce69bSBarry Smith   ierr = PetscMalloc1(api[am]+1,&ptap->apj);CHKERRQ(ierr);
281a1a4e84aSHong Zhang   apj  = ptap->apj;
282a1a4e84aSHong Zhang   ierr = PetscFreeSpaceContiguous(&free_space,ptap->apj);CHKERRQ(ierr);
283598bc09dSHong Zhang   ierr = PetscLLDestroy(lnk,lnkbt);CHKERRQ(ierr);
284598bc09dSHong Zhang 
285f84c536bSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
286071fcb05SBarry Smith   ierr = PetscCalloc1(pN,&ptap->apa);CHKERRQ(ierr);
287f84c536bSHong Zhang 
2884222ddf1SHong Zhang   /* set and assemble symbolic parallel matrix C */
2894222ddf1SHong Zhang   /*---------------------------------------------*/
2904222ddf1SHong Zhang   ierr = MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2914222ddf1SHong Zhang   ierr = MatSetBlockSizesFromMats(C,A,P);CHKERRQ(ierr);
292a2f3521dSMark F. Adams 
293b92f168fSBarry Smith   ierr = MatGetType(A,&mtype);CHKERRQ(ierr);
2944222ddf1SHong Zhang   ierr = MatSetType(C,mtype);CHKERRQ(ierr);
2954222ddf1SHong Zhang   ierr = MatMPIAIJSetPreallocation(C,0,dnz,0,onz);CHKERRQ(ierr);
2960926fe31SStefano Zampini   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
29717f75172Sandi selinger 
2984222ddf1SHong Zhang   ierr = MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api);CHKERRQ(ierr);
2994222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3004222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3010926fe31SStefano Zampini   ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
302598bc09dSHong Zhang 
3034222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
3044222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
305598bc09dSHong Zhang 
3064222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
3076718818eSStefano Zampini   C->product->data    = ptap;
3086718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
309598bc09dSHong Zhang 
310bfcd1a73SHong Zhang   /* set MatInfo */
311118727c9SMark F. Adams   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
312bfcd1a73SHong Zhang   if (afill < 1.0) afill = 1.0;
3134222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
3144222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
3154222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
316bfcd1a73SHong Zhang 
317bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
318bfcd1a73SHong Zhang   if (api[am]) {
3194222ddf1SHong Zhang     ierr = PetscInfo3(C,"Reallocs %D; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill);CHKERRQ(ierr);
3204222ddf1SHong Zhang     ierr = PetscInfo1(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill);CHKERRQ(ierr);
321bfcd1a73SHong Zhang   } else {
3224222ddf1SHong Zhang     ierr = PetscInfo(C,"Empty matrix product\n");CHKERRQ(ierr);
323bfcd1a73SHong Zhang   }
324bfcd1a73SHong Zhang #endif
325598bc09dSHong Zhang   PetscFunctionReturn(0);
326598bc09dSHong Zhang }
327598bc09dSHong Zhang 
3284222ddf1SHong Zhang /* ------------------------------------------------------- */
3296718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat,Mat,PetscReal,Mat);
3306718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat,Mat,Mat);
3316718818eSStefano Zampini 
3324222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C)
3339123193aSHong Zhang {
3344222ddf1SHong Zhang   Mat_Product *product = C->product;
3354222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
3369123193aSHong Zhang 
3379123193aSHong Zhang   PetscFunctionBegin;
3384222ddf1SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend)
3394222ddf1SHong Zhang     SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap->rstart,A->cmap->rend,B->rmap->rstart,B->rmap->rend);
3404222ddf1SHong Zhang 
3414222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense;
3424222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
3439123193aSHong Zhang   PetscFunctionReturn(0);
3449123193aSHong Zhang }
3454222ddf1SHong Zhang /* -------------------------------------------------------------------- */
3464222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C)
3474222ddf1SHong Zhang {
3484222ddf1SHong Zhang   Mat_Product *product = C->product;
3494222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
3504222ddf1SHong Zhang 
3514222ddf1SHong Zhang   PetscFunctionBegin;
3524222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
3534222ddf1SHong Zhang     SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
3544222ddf1SHong Zhang 
3554222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense;
3564222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
3574222ddf1SHong Zhang   PetscFunctionReturn(0);
3584222ddf1SHong Zhang }
3594222ddf1SHong Zhang 
3604222ddf1SHong Zhang /* --------------------------------------------------------------------- */
3614222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C)
3624222ddf1SHong Zhang {
3634222ddf1SHong Zhang   PetscErrorCode ierr;
3644222ddf1SHong Zhang   Mat_Product    *product = C->product;
3654222ddf1SHong Zhang 
3664222ddf1SHong Zhang   PetscFunctionBegin;
3674222ddf1SHong Zhang   switch (product->type) {
3684222ddf1SHong Zhang   case MATPRODUCT_AB:
3694222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C);CHKERRQ(ierr);
3704222ddf1SHong Zhang     break;
3714222ddf1SHong Zhang   case MATPRODUCT_AtB:
3724222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C);CHKERRQ(ierr);
3734222ddf1SHong Zhang     break;
3744222ddf1SHong Zhang   default:
3756718818eSStefano Zampini     break;
3764222ddf1SHong Zhang   }
3774222ddf1SHong Zhang   PetscFunctionReturn(0);
3784222ddf1SHong Zhang }
3794222ddf1SHong Zhang /* ------------------------------------------------------- */
3809123193aSHong Zhang 
3814324174eSBarry Smith typedef struct {
3825ea7661aSPierre Jolivet   Mat          workB,workB1;
3834324174eSBarry Smith   MPI_Request  *rwaits,*swaits;
38487753ddeSHong Zhang   PetscInt     nsends,nrecvs;
38587753ddeSHong Zhang   MPI_Datatype *stype,*rtype;
3866718818eSStefano Zampini   PetscInt     blda;
3874324174eSBarry Smith } MPIAIJ_MPIDense;
3884324174eSBarry Smith 
38996b95a6bSBarry Smith PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void *ctx)
3904324174eSBarry Smith {
3914324174eSBarry Smith   MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense*)ctx;
3924324174eSBarry Smith   PetscErrorCode  ierr;
39387753ddeSHong Zhang   PetscInt        i;
3944324174eSBarry Smith 
3954324174eSBarry Smith   PetscFunctionBegin;
3966bf464f9SBarry Smith   ierr = MatDestroy(&contents->workB);CHKERRQ(ierr);
39787753ddeSHong Zhang   ierr = MatDestroy(&contents->workB1);CHKERRQ(ierr);
39887753ddeSHong Zhang   for (i=0; i<contents->nsends; i++) {
399ffc4695bSBarry Smith     ierr = MPI_Type_free(&contents->stype[i]);CHKERRMPI(ierr);
40087753ddeSHong Zhang   }
40187753ddeSHong Zhang   for (i=0; i<contents->nrecvs; i++) {
402ffc4695bSBarry Smith     ierr = MPI_Type_free(&contents->rtype[i]);CHKERRMPI(ierr);
40387753ddeSHong Zhang   }
40487753ddeSHong Zhang   ierr = PetscFree4(contents->stype,contents->rtype,contents->rwaits,contents->swaits);CHKERRQ(ierr);
4054324174eSBarry Smith   ierr = PetscFree(contents);CHKERRQ(ierr);
4064324174eSBarry Smith   PetscFunctionReturn(0);
4074324174eSBarry Smith }
4084324174eSBarry Smith 
4096718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
4109123193aSHong Zhang {
4119123193aSHong Zhang   PetscErrorCode  ierr;
412f32d5d43SBarry Smith   Mat_MPIAIJ      *aij=(Mat_MPIAIJ*)A->data;
413825bfe5fSPierre Jolivet   PetscInt        nz=aij->B->cmap->n,nsends,nrecvs,i,nrows_to,j,blda,clda,m,M,n,N;
4144324174eSBarry Smith   MPIAIJ_MPIDense *contents;
4154324174eSBarry Smith   VecScatter      ctx=aij->Mvctx;
4165ea7661aSPierre Jolivet   PetscInt        Am=A->rmap->n,Bm=B->rmap->n,BN=B->cmap->N,Bbn,Bbn1,bs,nrows_from,numBb;
41787753ddeSHong Zhang   MPI_Comm        comm;
41887753ddeSHong Zhang   MPI_Datatype    type1,*stype,*rtype;
41987753ddeSHong Zhang   const PetscInt  *sindices,*sstarts,*rstarts;
42087753ddeSHong Zhang   PetscMPIInt     *disp;
4216718818eSStefano Zampini   PetscBool       cisdense;
4229123193aSHong Zhang 
4239123193aSHong Zhang   PetscFunctionBegin;
4246718818eSStefano Zampini   MatCheckProduct(C,4);
4256718818eSStefano Zampini   if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty");
42687753ddeSHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
4275ea7661aSPierre Jolivet   ierr = PetscObjectBaseTypeCompare((PetscObject)C,MATMPIDENSE,&cisdense);CHKERRQ(ierr);
4286718818eSStefano Zampini   if (!cisdense) {
4296718818eSStefano Zampini     ierr = MatSetType(C,((PetscObject)B)->type_name);CHKERRQ(ierr);
4306718818eSStefano Zampini   }
431825bfe5fSPierre Jolivet   ierr = MatGetLocalSize(C,&m,&n);CHKERRQ(ierr);
432825bfe5fSPierre Jolivet   ierr = MatGetSize(C,&M,&N);CHKERRQ(ierr);
433825bfe5fSPierre Jolivet   if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) {
4344222ddf1SHong Zhang     ierr = MatSetSizes(C,Am,B->cmap->n,A->rmap->N,BN);CHKERRQ(ierr);
435825bfe5fSPierre Jolivet   }
4364222ddf1SHong Zhang   ierr = MatSetBlockSizesFromMats(C,A,B);CHKERRQ(ierr);
4376718818eSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
4386718818eSStefano Zampini   ierr = MatDenseGetLDA(B,&blda);CHKERRQ(ierr);
4396718818eSStefano Zampini   ierr = MatDenseGetLDA(C,&clda);CHKERRQ(ierr);
440b00a9115SJed Brown   ierr = PetscNew(&contents);CHKERRQ(ierr);
4414324174eSBarry Smith 
44287753ddeSHong Zhang   ierr = VecScatterGetRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,NULL,NULL);CHKERRQ(ierr);
44387753ddeSHong Zhang   ierr = VecScatterGetRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,NULL,NULL);CHKERRQ(ierr);
44487753ddeSHong Zhang 
44587753ddeSHong Zhang   /* Create column block of B and C for memory scalability when BN is too large */
44687753ddeSHong Zhang   /* Estimate Bbn, column size of Bb */
44787753ddeSHong Zhang   if (nz) {
44887753ddeSHong Zhang     Bbn1 = 2*Am*BN/nz;
449da7cbbe7SHong Zhang     if (!Bbn1) Bbn1 = 1;
45087753ddeSHong Zhang   } else Bbn1 = BN;
45187753ddeSHong Zhang 
45287753ddeSHong Zhang   bs = PetscAbs(B->cmap->bs);
45387753ddeSHong Zhang   Bbn1 = Bbn1/bs *bs; /* Bbn1 is a multiple of bs */
45487753ddeSHong Zhang   if (Bbn1 > BN) Bbn1 = BN;
455ffc4695bSBarry Smith   ierr = MPI_Allreduce(&Bbn1,&Bbn,1,MPIU_INT,MPI_MAX,comm);CHKERRMPI(ierr);
45687753ddeSHong Zhang 
45787753ddeSHong Zhang   /* Enable runtime option for Bbn */
4584222ddf1SHong Zhang   ierr = PetscOptionsBegin(comm,((PetscObject)C)->prefix,"MatMatMult","Mat");CHKERRQ(ierr);
45987753ddeSHong Zhang   ierr = PetscOptionsInt("-matmatmult_Bbn","Number of columns in Bb","MatMatMult",Bbn,&Bbn,NULL);CHKERRQ(ierr);
46087753ddeSHong Zhang   ierr = PetscOptionsEnd();CHKERRQ(ierr);
4616718818eSStefano Zampini   Bbn  = PetscMin(Bbn,BN);
46287753ddeSHong Zhang 
4636718818eSStefano Zampini   if (Bbn > 0 && Bbn < BN) {
4645ea7661aSPierre Jolivet     numBb = BN/Bbn;
4655ea7661aSPierre Jolivet     Bbn1 = BN - numBb*Bbn;
4665ea7661aSPierre Jolivet   } else numBb = 0;
46787753ddeSHong Zhang 
4685ea7661aSPierre Jolivet   if (numBb) {
4695ea7661aSPierre Jolivet     ierr = PetscInfo3(C,"use Bb, BN=%D, Bbn=%D; numBb=%D\n",BN,Bbn,numBb);CHKERRQ(ierr);
4705ea7661aSPierre Jolivet     if (Bbn1) { /* Create workB1 for the remaining columns */
4714222ddf1SHong Zhang       ierr = PetscInfo2(C,"use Bb1, BN=%D, Bbn1=%D\n",BN,Bbn1);CHKERRQ(ierr);
47287753ddeSHong Zhang       /* Create work matrix used to store off processor rows of B needed for local product */
47387753ddeSHong Zhang       ierr = MatCreateSeqDense(PETSC_COMM_SELF,nz,Bbn1,NULL,&contents->workB1);CHKERRQ(ierr);
4745ea7661aSPierre Jolivet     } else contents->workB1 = NULL;
47587753ddeSHong Zhang   }
47687753ddeSHong Zhang 
47787753ddeSHong Zhang   /* Create work matrix used to store off processor rows of B needed for local product */
47887753ddeSHong Zhang   ierr = MatCreateSeqDense(PETSC_COMM_SELF,nz,Bbn,NULL,&contents->workB);CHKERRQ(ierr);
47987753ddeSHong Zhang 
48087753ddeSHong Zhang   /* Use MPI derived data type to reduce memory required by the send/recv buffers */
48187753ddeSHong Zhang   ierr = PetscMalloc4(nsends,&stype,nrecvs,&rtype,nrecvs,&contents->rwaits,nsends,&contents->swaits);CHKERRQ(ierr);
48287753ddeSHong Zhang   contents->stype  = stype;
48387753ddeSHong Zhang   contents->nsends = nsends;
48487753ddeSHong Zhang 
48587753ddeSHong Zhang   contents->rtype  = rtype;
48687753ddeSHong Zhang   contents->nrecvs = nrecvs;
4876718818eSStefano Zampini   contents->blda   = blda;
48887753ddeSHong Zhang 
48987753ddeSHong Zhang   ierr = PetscMalloc1(Bm+1,&disp);CHKERRQ(ierr);
49087753ddeSHong Zhang   for (i=0; i<nsends; i++) {
49187753ddeSHong Zhang     nrows_to = sstarts[i+1]-sstarts[i];
49287753ddeSHong Zhang     for (j=0; j<nrows_to; j++){
49387753ddeSHong Zhang       disp[j] = sindices[sstarts[i]+j]; /* rowB to be sent */
49487753ddeSHong Zhang     }
495ffc4695bSBarry Smith     ierr = MPI_Type_create_indexed_block(nrows_to,1,(const PetscMPIInt *)disp,MPIU_SCALAR,&type1);CHKERRMPI(ierr);
496905b3b74SHong Zhang 
497ffc4695bSBarry Smith     ierr = MPI_Type_create_resized(type1,0,blda*sizeof(PetscScalar),&stype[i]);CHKERRMPI(ierr);
498ffc4695bSBarry Smith     ierr = MPI_Type_commit(&stype[i]);CHKERRMPI(ierr);
499ffc4695bSBarry Smith     ierr = MPI_Type_free(&type1);CHKERRMPI(ierr);
50087753ddeSHong Zhang   }
50187753ddeSHong Zhang 
50287753ddeSHong Zhang   for (i=0; i<nrecvs; i++) {
50387753ddeSHong Zhang     /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */
50487753ddeSHong Zhang     nrows_from = rstarts[i+1]-rstarts[i];
50587753ddeSHong Zhang     disp[0] = 0;
506ffc4695bSBarry Smith     ierr = MPI_Type_create_indexed_block(1, nrows_from, (const PetscMPIInt *)disp, MPIU_SCALAR, &type1);CHKERRMPI(ierr);
507ffc4695bSBarry Smith     ierr = MPI_Type_create_resized(type1, 0, nz*sizeof(PetscScalar), &rtype[i]);CHKERRMPI(ierr);
508ffc4695bSBarry Smith     ierr = MPI_Type_commit(&rtype[i]);CHKERRMPI(ierr);
509ffc4695bSBarry Smith     ierr = MPI_Type_free(&type1);CHKERRMPI(ierr);
51087753ddeSHong Zhang   }
51187753ddeSHong Zhang 
51287753ddeSHong Zhang   ierr = PetscFree(disp);CHKERRQ(ierr);
51387753ddeSHong Zhang   ierr = VecScatterRestoreRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,NULL,NULL);CHKERRQ(ierr);
51487753ddeSHong Zhang   ierr = VecScatterRestoreRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,NULL,NULL);CHKERRQ(ierr);
515910cf402Sprj-   ierr = MatSetOption(C,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE);CHKERRQ(ierr);
5164222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
5174222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
5180926fe31SStefano Zampini   ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
5196718818eSStefano Zampini 
5206718818eSStefano Zampini   C->product->data = contents;
5216718818eSStefano Zampini   C->product->destroy = MatMPIAIJ_MPIDenseDestroy;
5224222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense;
5239123193aSHong Zhang   PetscFunctionReturn(0);
5249123193aSHong Zhang }
5259123193aSHong Zhang 
52693aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat,Mat,Mat,const PetscBool);
527f32d5d43SBarry Smith /*
5282636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
5292636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
53087753ddeSHong Zhang 
53187753ddeSHong Zhang     Input: Bbidx = 0: B = Bb
53287753ddeSHong Zhang                  = 1: B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense()
533f32d5d43SBarry Smith */
53487753ddeSHong Zhang PetscErrorCode MatMPIDenseScatter(Mat A,Mat B,PetscInt Bbidx,Mat C,Mat *outworkB)
535f32d5d43SBarry Smith {
536f32d5d43SBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ*)A->data;
537f32d5d43SBarry Smith   PetscErrorCode    ierr;
5381683a169SBarry Smith   const PetscScalar *b;
53987753ddeSHong Zhang   PetscScalar       *rvalues;
540f32d5d43SBarry Smith   VecScatter        ctx = aij->Mvctx;
54187753ddeSHong Zhang   const PetscInt    *sindices,*sstarts,*rstarts;
5423515ee7fSJunchao Zhang   const PetscMPIInt *sprocs,*rprocs;
5436718818eSStefano Zampini   PetscInt          i,nsends,nrecvs;
544f32d5d43SBarry Smith   MPI_Request       *swaits,*rwaits;
545ce94432eSBarry Smith   MPI_Comm          comm;
5466718818eSStefano Zampini   PetscMPIInt       tag=((PetscObject)ctx)->tag,ncols=B->cmap->N,nrows=aij->B->cmap->n,nsends_mpi,nrecvs_mpi;
5474324174eSBarry Smith   MPIAIJ_MPIDense   *contents;
5484324174eSBarry Smith   Mat               workB;
54987753ddeSHong Zhang   MPI_Datatype      *stype,*rtype;
5506718818eSStefano Zampini   PetscInt          blda;
551f32d5d43SBarry Smith 
552f32d5d43SBarry Smith   PetscFunctionBegin;
5536718818eSStefano Zampini   MatCheckProduct(C,4);
5546718818eSStefano Zampini   if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty");
5556718818eSStefano Zampini   contents = (MPIAIJ_MPIDense*)C->product->data;
5563515ee7fSJunchao Zhang   ierr = VecScatterGetRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,&sprocs,NULL/*bs*/);CHKERRQ(ierr);
55787753ddeSHong Zhang   ierr = VecScatterGetRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,&rprocs,NULL/*bs*/);CHKERRQ(ierr);
5583515ee7fSJunchao Zhang   ierr = PetscMPIIntCast(nsends,&nsends_mpi);CHKERRQ(ierr);
5593515ee7fSJunchao Zhang   ierr = PetscMPIIntCast(nrecvs,&nrecvs_mpi);CHKERRQ(ierr);
56087753ddeSHong Zhang   if (Bbidx == 0) {
56187753ddeSHong Zhang     workB = *outworkB = contents->workB;
56287753ddeSHong Zhang   } else {
56387753ddeSHong Zhang     workB = *outworkB = contents->workB1;
56487753ddeSHong Zhang   }
5656718818eSStefano Zampini   if (nrows != workB->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Number of rows of workB %D not equal to columns of aij->B %D",workB->cmap->n,nrows);
5663515ee7fSJunchao Zhang   swaits = contents->swaits;
5673515ee7fSJunchao Zhang   rwaits = contents->rwaits;
568f32d5d43SBarry Smith 
5691683a169SBarry Smith   ierr = MatDenseGetArrayRead(B,&b);CHKERRQ(ierr);
5706718818eSStefano Zampini   ierr = MatDenseGetLDA(B,&blda);CHKERRQ(ierr);
5716718818eSStefano Zampini   if (blda != contents->blda) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot reuse an input matrix with lda %D != %D",blda,contents->blda);
57287753ddeSHong Zhang   ierr = MatDenseGetArray(workB,&rvalues);CHKERRQ(ierr);
573f32d5d43SBarry Smith 
57487753ddeSHong Zhang   /* Post recv, use MPI derived data type to save memory */
5756718818eSStefano Zampini   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
57687753ddeSHong Zhang   rtype = contents->rtype;
5773515ee7fSJunchao Zhang   for (i=0; i<nrecvs; i++) {
578ffc4695bSBarry Smith     ierr = MPI_Irecv(rvalues+(rstarts[i]-rstarts[0]),ncols,rtype[i],rprocs[i],tag,comm,rwaits+i);CHKERRMPI(ierr);
579f32d5d43SBarry Smith   }
580f32d5d43SBarry Smith 
58187753ddeSHong Zhang   stype = contents->stype;
5823515ee7fSJunchao Zhang   for (i=0; i<nsends; i++) {
583ffc4695bSBarry Smith     ierr = MPI_Isend(b,ncols,stype[i],sprocs[i],tag,comm,swaits+i);CHKERRMPI(ierr);
584f32d5d43SBarry Smith   }
5852636ff26SBarry Smith 
586ffc4695bSBarry Smith   if (nrecvs) {ierr = MPI_Waitall(nrecvs_mpi,rwaits,MPI_STATUSES_IGNORE);CHKERRMPI(ierr);}
587ffc4695bSBarry Smith   if (nsends) {ierr = MPI_Waitall(nsends_mpi,swaits,MPI_STATUSES_IGNORE);CHKERRMPI(ierr);}
588f32d5d43SBarry Smith 
58987753ddeSHong Zhang   ierr = VecScatterRestoreRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,&sprocs,NULL);CHKERRQ(ierr);
59087753ddeSHong Zhang   ierr = VecScatterRestoreRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,&rprocs,NULL);CHKERRQ(ierr);
5911683a169SBarry Smith   ierr = MatDenseRestoreArrayRead(B,&b);CHKERRQ(ierr);
59287753ddeSHong Zhang   ierr = MatDenseRestoreArray(workB,&rvalues);CHKERRQ(ierr);
59387753ddeSHong Zhang   PetscFunctionReturn(0);
59487753ddeSHong Zhang }
595f32d5d43SBarry Smith 
5966718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A,Mat B,Mat C)
5979123193aSHong Zhang {
5989123193aSHong Zhang   PetscErrorCode  ierr;
599f32d5d43SBarry Smith   Mat_MPIAIJ      *aij    = (Mat_MPIAIJ*)A->data;
600f32d5d43SBarry Smith   Mat_MPIDense    *bdense = (Mat_MPIDense*)B->data;
601f32d5d43SBarry Smith   Mat_MPIDense    *cdense = (Mat_MPIDense*)C->data;
602f32d5d43SBarry Smith   Mat             workB;
60387753ddeSHong Zhang   MPIAIJ_MPIDense *contents;
6049123193aSHong Zhang 
6059123193aSHong Zhang   PetscFunctionBegin;
6066718818eSStefano Zampini   MatCheckProduct(C,3);
6076718818eSStefano Zampini   if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty");
6086718818eSStefano Zampini   contents = (MPIAIJ_MPIDense*)C->product->data;
609f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B */
6105ea7661aSPierre Jolivet   /* TODO: this calls a symbolic multiplication every time, which could be avoided */
6116718818eSStefano Zampini   ierr = MatMatMult(aij->A,bdense->A,MAT_REUSE_MATRIX,PETSC_DEFAULT,&cdense->A);CHKERRQ(ierr);
6125ea7661aSPierre Jolivet   if (contents->workB->cmap->n == B->cmap->N) {
61387753ddeSHong Zhang     /* get off processor parts of B needed to complete C=A*B */
61487753ddeSHong Zhang     ierr = MatMPIDenseScatter(A,B,0,C,&workB);CHKERRQ(ierr);
615f32d5d43SBarry Smith 
616f32d5d43SBarry Smith     /* off-diagonal block of A times nonlocal rows of B */
61793aa15f2SStefano Zampini     ierr = MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A,PETSC_TRUE);CHKERRQ(ierr);
61887753ddeSHong Zhang   } else {
6195ea7661aSPierre Jolivet     Mat      Bb,Cb;
6205ea7661aSPierre Jolivet     PetscInt BN=B->cmap->N,n=contents->workB->cmap->n,i;
621da7cbbe7SHong Zhang     if (n <= 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Column block size %D must be positive",n);
62287753ddeSHong Zhang 
6235ea7661aSPierre Jolivet     for (i=0; i<BN; i+=n) {
6245ea7661aSPierre Jolivet       ierr = MatDenseGetSubMatrix(B,i,PetscMin(i+n,BN),&Bb);CHKERRQ(ierr);
6255ea7661aSPierre Jolivet       ierr = MatDenseGetSubMatrix(C,i,PetscMin(i+n,BN),&Cb);CHKERRQ(ierr);
62687753ddeSHong Zhang 
6275ea7661aSPierre Jolivet       /* get off processor parts of B needed to complete C=A*B */
6285ea7661aSPierre Jolivet       ierr = MatMPIDenseScatter(A,Bb,i+n>BN,C,&workB);CHKERRQ(ierr);
6295ea7661aSPierre Jolivet 
6305ea7661aSPierre Jolivet       /* off-diagonal block of A times nonlocal rows of B */
6315ea7661aSPierre Jolivet       cdense = (Mat_MPIDense*)Cb->data;
63293aa15f2SStefano Zampini       ierr = MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A,PETSC_TRUE);CHKERRQ(ierr);
6335ea7661aSPierre Jolivet 
6345ea7661aSPierre Jolivet       ierr = MatDenseRestoreSubMatrix(B,&Bb);CHKERRQ(ierr);
6355ea7661aSPierre Jolivet       ierr = MatDenseRestoreSubMatrix(C,&Cb);CHKERRQ(ierr);
63687753ddeSHong Zhang     }
63787753ddeSHong Zhang   }
6389123193aSHong Zhang   PetscFunctionReturn(0);
6399123193aSHong Zhang }
640cf1a0672SHong Zhang 
641f8efd71cSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A,Mat P,Mat C)
6421634b032SHong Zhang {
6431634b032SHong Zhang   PetscErrorCode    ierr;
644cf1a0672SHong Zhang   Mat_MPIAIJ        *a   = (Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data;
645cf1a0672SHong Zhang   Mat_SeqAIJ        *ad  = (Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
646cf1a0672SHong Zhang   Mat_SeqAIJ        *cd  = (Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data;
647cf1a0672SHong Zhang   PetscInt          *adi = ad->i,*adj,*aoi=ao->i,*aoj;
648cf1a0672SHong Zhang   PetscScalar       *ada,*aoa,*cda=cd->a,*coa=co->a;
649cf1a0672SHong Zhang   Mat_SeqAIJ        *p_loc,*p_oth;
650cf1a0672SHong Zhang   PetscInt          *pi_loc,*pj_loc,*pi_oth,*pj_oth,*pj;
65129825010SHong Zhang   PetscScalar       *pa_loc,*pa_oth,*pa,valtmp,*ca;
65229825010SHong Zhang   PetscInt          cm    = C->rmap->n,anz,pnz;
6536718818eSStefano Zampini   Mat_APMPI         *ptap;
65480da8df7SHong Zhang   PetscScalar       *apa_sparse;
655ce496241SStefano Zampini   const PetscScalar *dummy;
656cf1a0672SHong Zhang   PetscInt          *api,*apj,*apJ,i,j,k,row;
65729825010SHong Zhang   PetscInt          cstart = C->cmap->rstart;
65829825010SHong Zhang   PetscInt          cdnz,conz,k0,k1,nextp;
659a7c7454dSHong Zhang   MPI_Comm          comm;
660a7c7454dSHong Zhang   PetscMPIInt       size;
6611634b032SHong Zhang 
6621634b032SHong Zhang   PetscFunctionBegin;
6636718818eSStefano Zampini   MatCheckProduct(C,3);
6646718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
6656718818eSStefano Zampini   if (!ptap) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
66680da8df7SHong Zhang   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
667ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
6686718818eSStefano Zampini   if (!ptap->P_oth && size>1) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"AP cannot be reused. Do not call MatProductClear()");
669a7c7454dSHong Zhang 
670*65e4b4d4SStefano Zampini   /* flag CPU mask for C */
671*65e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
672*65e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
673*65e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
674*65e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
675*65e4b4d4SStefano Zampini #endif
67680da8df7SHong Zhang   apa_sparse = ptap->apa;
67780da8df7SHong Zhang 
678cf1a0672SHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
679cf1a0672SHong Zhang   /*-----------------------------------------------------*/
680cf1a0672SHong Zhang   /* update numerical values of P_oth and P_loc */
681b7f45c76SHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
682cf1a0672SHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
683cf1a0672SHong Zhang 
684cf1a0672SHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
685cf1a0672SHong Zhang   /*----------------------------------------------------------*/
686cf1a0672SHong Zhang   /* get data from symbolic products */
687cf1a0672SHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
688cf1a0672SHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j; pa_loc = p_loc->a;
689a7c7454dSHong Zhang   if (size >1) {
690a7c7454dSHong Zhang     p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
691cf1a0672SHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j; pa_oth = p_oth->a;
69220e3dc75SHong Zhang   } else {
69320e3dc75SHong Zhang     p_oth = NULL; pi_oth = NULL; pj_oth = NULL; pa_oth = NULL;
694a7c7454dSHong Zhang   }
695cf1a0672SHong Zhang 
696ce496241SStefano Zampini   /* trigger copy to CPU */
697ce496241SStefano Zampini   ierr = MatSeqAIJGetArrayRead(a->A,&dummy);CHKERRQ(ierr);
698ce496241SStefano Zampini   ierr = MatSeqAIJRestoreArrayRead(a->A,&dummy);CHKERRQ(ierr);
699ce496241SStefano Zampini   ierr = MatSeqAIJGetArrayRead(a->B,&dummy);CHKERRQ(ierr);
700ce496241SStefano Zampini   ierr = MatSeqAIJRestoreArrayRead(a->B,&dummy);CHKERRQ(ierr);
70129825010SHong Zhang   api = ptap->api;
70229825010SHong Zhang   apj = ptap->apj;
703cf1a0672SHong Zhang   for (i=0; i<cm; i++) {
70429825010SHong Zhang     apJ = apj + api[i];
70529825010SHong Zhang 
706cf1a0672SHong Zhang     /* diagonal portion of A */
707cf1a0672SHong Zhang     anz = adi[i+1] - adi[i];
708cf1a0672SHong Zhang     adj = ad->j + adi[i];
709cf1a0672SHong Zhang     ada = ad->a + adi[i];
710cf1a0672SHong Zhang     for (j=0; j<anz; j++) {
711cf1a0672SHong Zhang       row = adj[j];
712cf1a0672SHong Zhang       pnz = pi_loc[row+1] - pi_loc[row];
713cf1a0672SHong Zhang       pj  = pj_loc + pi_loc[row];
714cf1a0672SHong Zhang       pa  = pa_loc + pi_loc[row];
71529825010SHong Zhang       /* perform sparse axpy */
716cf1a0672SHong Zhang       valtmp = ada[j];
71729825010SHong Zhang       nextp  = 0;
71829825010SHong Zhang       for (k=0; nextp<pnz; k++) {
71929825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
72029825010SHong Zhang           apa_sparse[k] += valtmp*pa[nextp++];
72129825010SHong Zhang         }
7221634b032SHong Zhang       }
723cf1a0672SHong Zhang       ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr);
724cf1a0672SHong Zhang     }
7251634b032SHong Zhang 
726cf1a0672SHong Zhang     /* off-diagonal portion of A */
727cf1a0672SHong Zhang     anz = aoi[i+1] - aoi[i];
728cf1a0672SHong Zhang     aoj = ao->j + aoi[i];
729cf1a0672SHong Zhang     aoa = ao->a + aoi[i];
730cf1a0672SHong Zhang     for (j=0; j<anz; j++) {
731cf1a0672SHong Zhang       row = aoj[j];
732cf1a0672SHong Zhang       pnz = pi_oth[row+1] - pi_oth[row];
733cf1a0672SHong Zhang       pj  = pj_oth + pi_oth[row];
734cf1a0672SHong Zhang       pa  = pa_oth + pi_oth[row];
73529825010SHong Zhang       /* perform sparse axpy */
736cf1a0672SHong Zhang       valtmp = aoa[j];
73729825010SHong Zhang       nextp  = 0;
73829825010SHong Zhang       for (k=0; nextp<pnz; k++) {
73929825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
74029825010SHong Zhang           apa_sparse[k] += valtmp*pa[nextp++];
74129825010SHong Zhang         }
742cf1a0672SHong Zhang       }
743cf1a0672SHong Zhang       ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr);
744cf1a0672SHong Zhang     }
7451634b032SHong Zhang 
746cf1a0672SHong Zhang     /* set values in C */
747cf1a0672SHong Zhang     cdnz = cd->i[i+1] - cd->i[i];
748cf1a0672SHong Zhang     conz = co->i[i+1] - co->i[i];
7491634b032SHong Zhang 
750910cf402Sprj-     /* 1st off-diagonal part of C */
751cf1a0672SHong Zhang     ca = coa + co->i[i];
752cf1a0672SHong Zhang     k  = 0;
753cf1a0672SHong Zhang     for (k0=0; k0<conz; k0++) {
754cf1a0672SHong Zhang       if (apJ[k] >= cstart) break;
75529825010SHong Zhang       ca[k0]        = apa_sparse[k];
75629825010SHong Zhang       apa_sparse[k] = 0.0;
757cf1a0672SHong Zhang       k++;
758cf1a0672SHong Zhang     }
7591634b032SHong Zhang 
760cf1a0672SHong Zhang     /* diagonal part of C */
761cf1a0672SHong Zhang     ca = cda + cd->i[i];
762cf1a0672SHong Zhang     for (k1=0; k1<cdnz; k1++) {
76329825010SHong Zhang       ca[k1]        = apa_sparse[k];
76429825010SHong Zhang       apa_sparse[k] = 0.0;
765cf1a0672SHong Zhang       k++;
766cf1a0672SHong Zhang     }
767cf1a0672SHong Zhang 
768910cf402Sprj-     /* 2nd off-diagonal part of C */
769cf1a0672SHong Zhang     ca = coa + co->i[i];
770cf1a0672SHong Zhang     for (; k0<conz; k0++) {
77129825010SHong Zhang       ca[k0]        = apa_sparse[k];
77229825010SHong Zhang       apa_sparse[k] = 0.0;
773cf1a0672SHong Zhang       k++;
774cf1a0672SHong Zhang     }
775cf1a0672SHong Zhang   }
776cf1a0672SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
777cf1a0672SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
778cf1a0672SHong Zhang   PetscFunctionReturn(0);
779cf1a0672SHong Zhang }
780cf1a0672SHong Zhang 
7810fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */
7824222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A,Mat P,PetscReal fill,Mat C)
783cf1a0672SHong Zhang {
784cf1a0672SHong Zhang   PetscErrorCode     ierr;
785ce94432eSBarry Smith   MPI_Comm           comm;
786a7c7454dSHong Zhang   PetscMPIInt        size;
7873cdca5ebSHong Zhang   Mat_APMPI          *ptap;
7880298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL,current_space=NULL;
7896718818eSStefano Zampini   Mat_MPIAIJ         *a  = (Mat_MPIAIJ*)A->data;
790cf1a0672SHong Zhang   Mat_SeqAIJ         *ad = (Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth;
7917dbaa2c6Sandi selinger   PetscInt           *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz;
792cf1a0672SHong Zhang   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart;
7938c78258cSHong Zhang   PetscInt           i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi,*lnk,apnz_max=1;
794e5ab8c0aSKarl Rupp   PetscInt           am=A->rmap->n,pn=P->cmap->n,pm=P->rmap->n,lsize=pn+20;
795cf1a0672SHong Zhang   PetscReal          afill;
796b92f168fSBarry Smith   MatType            mtype;
797cf1a0672SHong Zhang 
798cf1a0672SHong Zhang   PetscFunctionBegin;
7996718818eSStefano Zampini   MatCheckProduct(C,4);
8006718818eSStefano Zampini   if (C->product->data) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
801ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
802ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
803a7c7454dSHong Zhang 
8043cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
805b00a9115SJed Brown   ierr = PetscNew(&ptap);CHKERRQ(ierr);
806cf1a0672SHong Zhang 
807cf1a0672SHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
808b7f45c76SHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
80919f0e57aSHong Zhang 
810cf1a0672SHong Zhang   /* get P_loc by taking all local rows of P */
811cf1a0672SHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
812cf1a0672SHong Zhang 
813cf1a0672SHong Zhang   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
814cf1a0672SHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j;
815a7c7454dSHong Zhang   if (size > 1) {
816a7c7454dSHong Zhang     p_oth  = (Mat_SeqAIJ*)(ptap->P_oth)->data;
81720e3dc75SHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j;
818968382fdSHong Zhang   } else {
81920e3dc75SHong Zhang     p_oth  = NULL;
82020e3dc75SHong Zhang     pi_oth = NULL; pj_oth = NULL;
821a7c7454dSHong Zhang   }
822cf1a0672SHong Zhang 
823cf1a0672SHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
824cf1a0672SHong Zhang   /*-------------------------------------------------------------------*/
825854ce69bSBarry Smith   ierr      = PetscMalloc1(am+2,&api);CHKERRQ(ierr);
826cf1a0672SHong Zhang   ptap->api = api;
827cf1a0672SHong Zhang   api[0]    = 0;
828cf1a0672SHong Zhang 
8298a210135Sandi selinger   ierr = PetscLLCondensedCreate_Scalable(lsize,&lnk);CHKERRQ(ierr);
830cf1a0672SHong Zhang 
831cf1a0672SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
832f91af8c7SBarry Smith   ierr = PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space);CHKERRQ(ierr);
833cf1a0672SHong Zhang   current_space = free_space;
834cf1a0672SHong Zhang   ierr = MatPreallocateInitialize(comm,am,pn,dnz,onz);CHKERRQ(ierr);
835cf1a0672SHong Zhang   for (i=0; i<am; i++) {
836cf1a0672SHong Zhang     /* diagonal portion of A */
837cf1a0672SHong Zhang     nzi = adi[i+1] - adi[i];
838cf1a0672SHong Zhang     for (j=0; j<nzi; j++) {
839cf1a0672SHong Zhang       row  = *adj++;
840cf1a0672SHong Zhang       pnz  = pi_loc[row+1] - pi_loc[row];
841cf1a0672SHong Zhang       Jptr = pj_loc + pi_loc[row];
8428a210135Sandi selinger       /* Expand list if it is not long enough */
8438328dd82Sandi selinger       if (pnz+apnz_max > lsize) {
8448328dd82Sandi selinger         lsize = pnz+apnz_max;
84526465080Sandi selinger         ierr = PetscLLCondensedExpand_Scalable(lsize, &lnk);CHKERRQ(ierr);
8468a210135Sandi selinger       }
847cf1a0672SHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
848f84c536bSHong Zhang       ierr = PetscLLCondensedAddSorted_Scalable(pnz,Jptr,lnk);CHKERRQ(ierr);
8498a210135Sandi selinger       apnz     = *lnk; /* The first element in the list is the number of items in the list */
8508a210135Sandi selinger       api[i+1] = api[i] + apnz;
8518c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
852cf1a0672SHong Zhang     }
853cf1a0672SHong Zhang     /* off-diagonal portion of A */
854cf1a0672SHong Zhang     nzi = aoi[i+1] - aoi[i];
855cf1a0672SHong Zhang     for (j=0; j<nzi; j++) {
856cf1a0672SHong Zhang       row  = *aoj++;
857cf1a0672SHong Zhang       pnz  = pi_oth[row+1] - pi_oth[row];
858cf1a0672SHong Zhang       Jptr = pj_oth + pi_oth[row];
8598a210135Sandi selinger       /* Expand list if it is not long enough */
8608328dd82Sandi selinger       if (pnz+apnz_max > lsize) {
8618328dd82Sandi selinger         lsize = pnz + apnz_max;
86226465080Sandi selinger         ierr = PetscLLCondensedExpand_Scalable(lsize, &lnk);CHKERRQ(ierr);
8638a210135Sandi selinger       }
8648a210135Sandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
865f84c536bSHong Zhang       ierr = PetscLLCondensedAddSorted_Scalable(pnz,Jptr,lnk);CHKERRQ(ierr);
8668a210135Sandi selinger       apnz     = *lnk;  /* The first element in the list is the number of items in the list */
8678a210135Sandi selinger       api[i+1] = api[i] + apnz;
8688c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
869cf1a0672SHong Zhang     }
8708c78258cSHong Zhang 
8718c78258cSHong Zhang     /* add missing diagonal entry */
8728c78258cSHong Zhang     if (C->force_diagonals) {
8738c78258cSHong Zhang       j = i + rstart; /* column index */
8748c78258cSHong Zhang       ierr = PetscLLCondensedAddSorted_Scalable(1,&j,lnk);CHKERRQ(ierr);
8758c78258cSHong Zhang     }
8768c78258cSHong Zhang 
877f84c536bSHong Zhang     apnz     = *lnk;
878cf1a0672SHong Zhang     api[i+1] = api[i] + apnz;
8798a210135Sandi selinger     if (apnz > apnz_max) apnz_max = apnz;
880cf1a0672SHong Zhang 
881cf1a0672SHong Zhang     /* if free space is not available, double the total space in the list */
882cf1a0672SHong Zhang     if (current_space->local_remaining<apnz) {
883f91af8c7SBarry Smith       ierr = PetscFreeSpaceGet(PetscIntSumTruncate(apnz,current_space->total_array_size),&current_space);CHKERRQ(ierr);
884cf1a0672SHong Zhang       nspacedouble++;
885cf1a0672SHong Zhang     }
886cf1a0672SHong Zhang 
887cf1a0672SHong Zhang     /* Copy data into free space, then initialize lnk */
888f84c536bSHong Zhang     ierr = PetscLLCondensedClean_Scalable(apnz,current_space->array,lnk);CHKERRQ(ierr);
889cf1a0672SHong Zhang     ierr = MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz);CHKERRQ(ierr);
8902205254eSKarl Rupp 
891cf1a0672SHong Zhang     current_space->array           += apnz;
892cf1a0672SHong Zhang     current_space->local_used      += apnz;
893cf1a0672SHong Zhang     current_space->local_remaining -= apnz;
894cf1a0672SHong Zhang   }
895cf1a0672SHong Zhang 
896cf1a0672SHong Zhang   /* Allocate space for apj, initialize apj, and */
897cf1a0672SHong Zhang   /* destroy list of free space and other temporary array(s) */
898854ce69bSBarry Smith   ierr = PetscMalloc1(api[am]+1,&ptap->apj);CHKERRQ(ierr);
899cf1a0672SHong Zhang   apj  = ptap->apj;
900cf1a0672SHong Zhang   ierr = PetscFreeSpaceContiguous(&free_space,ptap->apj);CHKERRQ(ierr);
901f84c536bSHong Zhang   ierr = PetscLLCondensedDestroy_Scalable(lnk);CHKERRQ(ierr);
902cf1a0672SHong Zhang 
9034222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
904cf1a0672SHong Zhang   /*----------------------------------------------------*/
9054222ddf1SHong Zhang   ierr = MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
9064222ddf1SHong Zhang   ierr = MatSetBlockSizesFromMats(C,A,P);CHKERRQ(ierr);
907b92f168fSBarry Smith   ierr = MatGetType(A,&mtype);CHKERRQ(ierr);
9084222ddf1SHong Zhang   ierr = MatSetType(C,mtype);CHKERRQ(ierr);
9094222ddf1SHong Zhang   ierr = MatMPIAIJSetPreallocation(C,0,dnz,0,onz);CHKERRQ(ierr);
9100926fe31SStefano Zampini   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
911cf1a0672SHong Zhang 
9124222ddf1SHong Zhang   /* malloc apa for assembly C */
913071fcb05SBarry Smith   ierr = PetscCalloc1(apnz_max,&ptap->apa);CHKERRQ(ierr);
91417f75172Sandi selinger 
9154222ddf1SHong Zhang   ierr = MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api);CHKERRQ(ierr);
9164222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9174222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9180926fe31SStefano Zampini   ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
919cf1a0672SHong Zhang 
9204222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
9214222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
922cf1a0672SHong Zhang 
9234222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
9246718818eSStefano Zampini   C->product->data    = ptap;
9256718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
926cf1a0672SHong Zhang 
927cf1a0672SHong Zhang   /* set MatInfo */
928118727c9SMark F. Adams   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
929cf1a0672SHong Zhang   if (afill < 1.0) afill = 1.0;
9304222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
9314222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
9324222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
933cf1a0672SHong Zhang 
934cf1a0672SHong Zhang #if defined(PETSC_USE_INFO)
935cf1a0672SHong Zhang   if (api[am]) {
9364222ddf1SHong Zhang     ierr = PetscInfo3(C,"Reallocs %D; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill);CHKERRQ(ierr);
9374222ddf1SHong Zhang     ierr = PetscInfo1(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill);CHKERRQ(ierr);
938cf1a0672SHong Zhang   } else {
9394222ddf1SHong Zhang     ierr = PetscInfo(C,"Empty matrix product\n");CHKERRQ(ierr);
940cf1a0672SHong Zhang   }
941cf1a0672SHong Zhang #endif
9421634b032SHong Zhang   PetscFunctionReturn(0);
9431634b032SHong Zhang }
944f96d37fcSHong Zhang 
945a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication.  */
946a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the    */
947a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once.     */
948a9d7e0ccSandi selinger static void Merge3SortedArrays(PetscInt  size1, PetscInt *in1,
949a9d7e0ccSandi selinger                                PetscInt  size2, PetscInt *in2,
950a9d7e0ccSandi selinger                                PetscInt  size3, PetscInt *in3,
951a9d7e0ccSandi selinger                                PetscInt *size4, PetscInt *out)
952a9d7e0ccSandi selinger {
953a9d7e0ccSandi selinger   int i = 0, j = 0, k = 0, l = 0;
954a9d7e0ccSandi selinger 
955a9d7e0ccSandi selinger   /* Traverse all three arrays */
956a9d7e0ccSandi selinger   while (i<size1 && j<size2 && k<size3) {
957a9d7e0ccSandi selinger     if (in1[i] < in2[j] && in1[i] < in3[k]) {
958a9d7e0ccSandi selinger       out[l++] = in1[i++];
959a9d7e0ccSandi selinger     }
960a9d7e0ccSandi selinger     else if (in2[j] < in1[i] && in2[j] < in3[k]) {
961a9d7e0ccSandi selinger       out[l++] = in2[j++];
962a9d7e0ccSandi selinger     }
963a9d7e0ccSandi selinger     else if (in3[k] < in1[i] && in3[k] < in2[j]) {
964a9d7e0ccSandi selinger       out[l++] = in3[k++];
965a9d7e0ccSandi selinger     }
966a9d7e0ccSandi selinger     else if (in1[i] == in2[j] && in1[i] < in3[k]) {
967a9d7e0ccSandi selinger       out[l++] = in1[i];
968a9d7e0ccSandi selinger       i++, j++;
969a9d7e0ccSandi selinger     }
970a9d7e0ccSandi selinger     else if (in1[i] == in3[k] && in1[i] < in2[j]) {
971a9d7e0ccSandi selinger       out[l++] = in1[i];
972a9d7e0ccSandi selinger       i++, k++;
973a9d7e0ccSandi selinger     }
974a9d7e0ccSandi selinger     else if (in3[k] == in2[j] && in2[j] < in1[i])  {
975a9d7e0ccSandi selinger       out[l++] = in2[j];
976a9d7e0ccSandi selinger       k++, j++;
977a9d7e0ccSandi selinger     }
978a9d7e0ccSandi selinger     else if (in1[i] == in2[j] && in1[i] == in3[k]) {
979a9d7e0ccSandi selinger       out[l++] = in1[i];
980a9d7e0ccSandi selinger       i++, j++, k++;
981a9d7e0ccSandi selinger     }
982a9d7e0ccSandi selinger   }
983a9d7e0ccSandi selinger 
984a9d7e0ccSandi selinger   /* Traverse two remaining arrays */
985a9d7e0ccSandi selinger   while (i<size1 && j<size2) {
986a9d7e0ccSandi selinger     if (in1[i] < in2[j]) {
987a9d7e0ccSandi selinger       out[l++] = in1[i++];
988a9d7e0ccSandi selinger     }
989a9d7e0ccSandi selinger     else if (in1[i] > in2[j]) {
990a9d7e0ccSandi selinger       out[l++] = in2[j++];
991a9d7e0ccSandi selinger     }
992a9d7e0ccSandi selinger     else {
993a9d7e0ccSandi selinger       out[l++] = in1[i];
994a9d7e0ccSandi selinger       i++, j++;
995a9d7e0ccSandi selinger     }
996a9d7e0ccSandi selinger   }
997a9d7e0ccSandi selinger 
998a9d7e0ccSandi selinger   while (i<size1 && k<size3) {
999a9d7e0ccSandi selinger     if (in1[i] < in3[k]) {
1000a9d7e0ccSandi selinger       out[l++] = in1[i++];
1001a9d7e0ccSandi selinger     }
1002a9d7e0ccSandi selinger     else if (in1[i] > in3[k]) {
1003a9d7e0ccSandi selinger       out[l++] = in3[k++];
1004a9d7e0ccSandi selinger     }
1005a9d7e0ccSandi selinger     else {
1006a9d7e0ccSandi selinger       out[l++] = in1[i];
1007a9d7e0ccSandi selinger       i++, k++;
1008a9d7e0ccSandi selinger     }
1009a9d7e0ccSandi selinger   }
1010a9d7e0ccSandi selinger 
1011a9d7e0ccSandi selinger   while (k<size3 && j<size2)  {
1012a9d7e0ccSandi selinger     if (in3[k] < in2[j]) {
1013a9d7e0ccSandi selinger       out[l++] = in3[k++];
1014a9d7e0ccSandi selinger     }
1015a9d7e0ccSandi selinger     else if (in3[k] > in2[j]) {
1016a9d7e0ccSandi selinger       out[l++] = in2[j++];
1017a9d7e0ccSandi selinger     }
1018a9d7e0ccSandi selinger     else {
1019a9d7e0ccSandi selinger       out[l++] = in3[k];
1020a9d7e0ccSandi selinger       k++, j++;
1021a9d7e0ccSandi selinger     }
1022a9d7e0ccSandi selinger   }
1023a9d7e0ccSandi selinger 
1024a9d7e0ccSandi selinger   /* Traverse one remaining array */
1025a9d7e0ccSandi selinger   while (i<size1) out[l++] = in1[i++];
1026a9d7e0ccSandi selinger   while (j<size2) out[l++] = in2[j++];
1027a9d7e0ccSandi selinger   while (k<size3) out[l++] = in3[k++];
1028a9d7e0ccSandi selinger 
1029a9d7e0ccSandi selinger   *size4 = l;
1030a9d7e0ccSandi selinger }
1031a9d7e0ccSandi selinger 
103273b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and  */
103373b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential)      */
103473b67375Sandi selinger /* matrix-matrix multiplications.  */
10354222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C)
1036a9d7e0ccSandi selinger {
1037a9d7e0ccSandi selinger   PetscErrorCode     ierr;
1038a9d7e0ccSandi selinger   MPI_Comm           comm;
1039a9d7e0ccSandi selinger   PetscMPIInt        size;
10403cdca5ebSHong Zhang   Mat_APMPI          *ptap;
1041a9d7e0ccSandi selinger   PetscFreeSpaceList free_space_diag=NULL, current_space=NULL;
1042a9d7e0ccSandi selinger   Mat_MPIAIJ         *a  =(Mat_MPIAIJ*)A->data;
1043a9d7e0ccSandi selinger   Mat_SeqAIJ         *ad =(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc;
1044a9d7e0ccSandi selinger   Mat_MPIAIJ         *p  =(Mat_MPIAIJ*)P->data;
1045a9d7e0ccSandi selinger   Mat_SeqAIJ         *adpd_seq, *p_off, *aopoth_seq;
1046a9d7e0ccSandi selinger   PetscInt           adponz, adpdnz;
10477dbaa2c6Sandi selinger   PetscInt           *pi_loc,*dnz,*onz;
1048a9d7e0ccSandi selinger   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,rstart=A->rmap->rstart;
1049a9d7e0ccSandi selinger   PetscInt           *lnk,i, i1=0,pnz,row,*adpoi,*adpoj, *api, *adpoJ, *aopJ, *apJ,*Jptr, aopnz, nspacedouble=0,j,nzi,
1050a9d7e0ccSandi selinger                      *apj,apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj;
1051a016958eSandi selinger   PetscInt           am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n, p_colstart, p_colend;
1052a9d7e0ccSandi selinger   PetscBT            lnkbt;
1053a9d7e0ccSandi selinger   PetscReal          afill;
1054a9d7e0ccSandi selinger   PetscMPIInt        rank;
1055a9d7e0ccSandi selinger   Mat                adpd, aopoth;
1056b92f168fSBarry Smith   MatType            mtype;
1057e83e5f86SFande Kong   const char         *prefix;
1058a9d7e0ccSandi selinger 
1059a9d7e0ccSandi selinger   PetscFunctionBegin;
10606718818eSStefano Zampini   MatCheckProduct(C,4);
10616718818eSStefano Zampini   if (C->product->data) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
1062a9d7e0ccSandi selinger   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1063ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
1064ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
1065a016958eSandi selinger   ierr = MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend);CHKERRQ(ierr);
1066a9d7e0ccSandi selinger 
10673cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
1068a9d7e0ccSandi selinger   ierr = PetscNew(&ptap);CHKERRQ(ierr);
1069a9d7e0ccSandi selinger 
1070a9d7e0ccSandi selinger   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
1071a9d7e0ccSandi selinger   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
1072a9d7e0ccSandi selinger 
1073a9d7e0ccSandi selinger   /* get P_loc by taking all local rows of P */
1074a9d7e0ccSandi selinger   ierr = MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
1075a9d7e0ccSandi selinger 
1076a9d7e0ccSandi selinger 
1077a9d7e0ccSandi selinger   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
1078a9d7e0ccSandi selinger   pi_loc = p_loc->i;
1079a9d7e0ccSandi selinger 
1080a9d7e0ccSandi selinger   /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */
1081a9d7e0ccSandi selinger   ierr      = PetscMalloc1(am+2,&api);CHKERRQ(ierr);
1082a9d7e0ccSandi selinger   ierr      = PetscMalloc1(am+2,&adpoi);CHKERRQ(ierr);
1083a9d7e0ccSandi selinger 
1084a9d7e0ccSandi selinger   adpoi[0]    = 0;
1085a9d7e0ccSandi selinger   ptap->api = api;
1086a9d7e0ccSandi selinger   api[0] = 0;
1087a9d7e0ccSandi selinger 
1088a9d7e0ccSandi selinger   /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */
1089a9d7e0ccSandi selinger   ierr = PetscLLCondensedCreate(pN,pN,&lnk,&lnkbt);CHKERRQ(ierr);
1090a9d7e0ccSandi selinger   ierr = MatPreallocateInitialize(comm,am,pn,dnz,onz);CHKERRQ(ierr);
1091a9d7e0ccSandi selinger 
1092a9d7e0ccSandi selinger   /* Symbolic calc of A_loc_diag * P_loc_diag */
1093e83e5f86SFande Kong   ierr = MatGetOptionsPrefix(A,&prefix);CHKERRQ(ierr);
10944222ddf1SHong Zhang   ierr = MatProductCreate(a->A,p->A,NULL,&adpd);CHKERRQ(ierr);
10954222ddf1SHong Zhang   ierr = MatGetOptionsPrefix(A,&prefix);CHKERRQ(ierr);
10964222ddf1SHong Zhang   ierr = MatSetOptionsPrefix(adpd,prefix);CHKERRQ(ierr);
10974222ddf1SHong Zhang   ierr = MatAppendOptionsPrefix(adpd,"inner_diag_");CHKERRQ(ierr);
10984222ddf1SHong Zhang 
10994222ddf1SHong Zhang   ierr = MatProductSetType(adpd,MATPRODUCT_AB);CHKERRQ(ierr);
11004222ddf1SHong Zhang   ierr = MatProductSetAlgorithm(adpd,"sorted");CHKERRQ(ierr);
11014222ddf1SHong Zhang   ierr = MatProductSetFill(adpd,fill);CHKERRQ(ierr);
11024222ddf1SHong Zhang   ierr = MatProductSetFromOptions(adpd);CHKERRQ(ierr);
11038c78258cSHong Zhang 
11048c78258cSHong Zhang   adpd->force_diagonals = C->force_diagonals;
11054222ddf1SHong Zhang   ierr = MatProductSymbolic(adpd);CHKERRQ(ierr);
11064222ddf1SHong Zhang 
1107a9d7e0ccSandi selinger   adpd_seq = (Mat_SeqAIJ*)((adpd)->data);
1108a9d7e0ccSandi selinger   adpdi = adpd_seq->i; adpdj = adpd_seq->j;
1109a9d7e0ccSandi selinger   p_off = (Mat_SeqAIJ*)((p->B)->data);
1110a9d7e0ccSandi selinger   poff_i = p_off->i; poff_j = p_off->j;
1111a9d7e0ccSandi selinger 
111273b67375Sandi selinger   /* j_temp stores indices of a result row before they are added to the linked list */
1113a9d7e0ccSandi selinger   ierr = PetscMalloc1(pN+2,&j_temp);CHKERRQ(ierr);
1114a9d7e0ccSandi selinger 
1115a9d7e0ccSandi selinger 
1116a9d7e0ccSandi selinger   /* Symbolic calc of the A_diag * p_loc_off */
1117a9d7e0ccSandi selinger   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
1118a9d7e0ccSandi selinger   ierr = PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space_diag);CHKERRQ(ierr);
1119a9d7e0ccSandi selinger   current_space = free_space_diag;
1120a9d7e0ccSandi selinger 
1121a9d7e0ccSandi selinger   for (i=0; i<am; i++) {
1122a9d7e0ccSandi selinger     /* A_diag * P_loc_off */
1123a9d7e0ccSandi selinger     nzi = adi[i+1] - adi[i];
1124a9d7e0ccSandi selinger     for (j=0; j<nzi; j++) {
1125a9d7e0ccSandi selinger       row  = *adj++;
1126a9d7e0ccSandi selinger       pnz  = poff_i[row+1] - poff_i[row];
1127a9d7e0ccSandi selinger       Jptr = poff_j + poff_i[row];
1128a9d7e0ccSandi selinger       for (i1 = 0; i1 < pnz; i1++) {
1129a9d7e0ccSandi selinger         j_temp[i1] = p->garray[Jptr[i1]];
1130a9d7e0ccSandi selinger       }
1131a9d7e0ccSandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
1132a9d7e0ccSandi selinger       ierr = PetscLLCondensedAddSorted(pnz,j_temp,lnk,lnkbt);CHKERRQ(ierr);
1133a9d7e0ccSandi selinger     }
1134a9d7e0ccSandi selinger 
1135a9d7e0ccSandi selinger     adponz     = lnk[0];
1136a9d7e0ccSandi selinger     adpoi[i+1] = adpoi[i] + adponz;
1137a9d7e0ccSandi selinger 
1138a9d7e0ccSandi selinger     /* if free space is not available, double the total space in the list */
1139a9d7e0ccSandi selinger     if (current_space->local_remaining<adponz) {
1140a9d7e0ccSandi selinger       ierr = PetscFreeSpaceGet(PetscIntSumTruncate(adponz,current_space->total_array_size),&current_space);CHKERRQ(ierr);
1141a9d7e0ccSandi selinger       nspacedouble++;
1142a9d7e0ccSandi selinger     }
1143a9d7e0ccSandi selinger 
1144a9d7e0ccSandi selinger     /* Copy data into free space, then initialize lnk */
1145a9d7e0ccSandi selinger     ierr = PetscLLCondensedClean(pN,adponz,current_space->array,lnk,lnkbt);CHKERRQ(ierr);
1146a9d7e0ccSandi selinger 
1147a9d7e0ccSandi selinger     current_space->array           += adponz;
1148a9d7e0ccSandi selinger     current_space->local_used      += adponz;
1149a9d7e0ccSandi selinger     current_space->local_remaining -= adponz;
1150a9d7e0ccSandi selinger   }
1151a9d7e0ccSandi selinger 
1152a9d7e0ccSandi selinger   /* Symbolic calc of A_off * P_oth */
1153e83e5f86SFande Kong   ierr = MatSetOptionsPrefix(a->B,prefix);CHKERRQ(ierr);
1154e83e5f86SFande Kong   ierr = MatAppendOptionsPrefix(a->B,"inner_offdiag_");CHKERRQ(ierr);
11554222ddf1SHong Zhang   ierr = MatCreate(PETSC_COMM_SELF,&aopoth);CHKERRQ(ierr);
11564222ddf1SHong Zhang   ierr = MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth);CHKERRQ(ierr);
1157a9d7e0ccSandi selinger   aopoth_seq = (Mat_SeqAIJ*)((aopoth)->data);
1158a9d7e0ccSandi selinger   aopothi = aopoth_seq->i; aopothj = aopoth_seq->j;
1159a9d7e0ccSandi selinger 
1160a9d7e0ccSandi selinger   /* Allocate space for apj, adpj, aopj, ... */
1161a9d7e0ccSandi selinger   /* destroy lists of free space and other temporary array(s) */
1162a9d7e0ccSandi selinger 
1163a9d7e0ccSandi selinger   ierr = PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am]+2, &ptap->apj);CHKERRQ(ierr);
1164a9d7e0ccSandi selinger   ierr = PetscMalloc1(adpoi[am]+2, &adpoj);CHKERRQ(ierr);
1165a9d7e0ccSandi selinger 
1166a9d7e0ccSandi selinger   /* Copy from linked list to j-array */
1167a9d7e0ccSandi selinger   ierr = PetscFreeSpaceContiguous(&free_space_diag,adpoj);CHKERRQ(ierr);
1168a9d7e0ccSandi selinger   ierr = PetscLLDestroy(lnk,lnkbt);CHKERRQ(ierr);
1169a9d7e0ccSandi selinger 
1170a9d7e0ccSandi selinger   adpoJ = adpoj;
1171a9d7e0ccSandi selinger   adpdJ = adpdj;
1172a9d7e0ccSandi selinger   aopJ = aopothj;
1173a9d7e0ccSandi selinger   apj  = ptap->apj;
1174a9d7e0ccSandi selinger   apJ = apj; /* still empty */
1175a9d7e0ccSandi selinger 
1176a9d7e0ccSandi selinger   /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */
1177a9d7e0ccSandi selinger   /* A_diag * P_loc_diag to get A*P */
1178a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1179a9d7e0ccSandi selinger     aopnz  =  aopothi[i+1] -  aopothi[i];
1180a9d7e0ccSandi selinger     adponz = adpoi[i+1] - adpoi[i];
1181a9d7e0ccSandi selinger     adpdnz = adpdi[i+1] - adpdi[i];
1182a9d7e0ccSandi selinger 
1183a9d7e0ccSandi selinger     /* Correct indices from A_diag*P_diag */
1184a9d7e0ccSandi selinger     for (i1 = 0; i1 < adpdnz; i1++) {
1185a016958eSandi selinger       adpdJ[i1] += p_colstart;
1186a9d7e0ccSandi selinger     }
1187a9d7e0ccSandi selinger     /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */
1188a9d7e0ccSandi selinger     Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ);
1189a9d7e0ccSandi selinger     ierr = MatPreallocateSet(i+rstart, apnz, apJ, dnz, onz);CHKERRQ(ierr);
1190a9d7e0ccSandi selinger 
1191a9d7e0ccSandi selinger     aopJ += aopnz;
1192a9d7e0ccSandi selinger     adpoJ += adponz;
1193a9d7e0ccSandi selinger     adpdJ += adpdnz;
1194a9d7e0ccSandi selinger     apJ += apnz;
1195a9d7e0ccSandi selinger     api[i+1] = api[i] + apnz;
1196a9d7e0ccSandi selinger   }
1197a9d7e0ccSandi selinger 
1198a9d7e0ccSandi selinger   /* malloc apa to store dense row A[i,:]*P */
1199071fcb05SBarry Smith   ierr = PetscCalloc1(pN+2,&ptap->apa);CHKERRQ(ierr);
1200a9d7e0ccSandi selinger 
12014222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
12024222ddf1SHong Zhang   ierr = MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
12034222ddf1SHong Zhang   ierr = MatSetBlockSizesFromMats(C,A,P);CHKERRQ(ierr);
1204b92f168fSBarry Smith   ierr = MatGetType(A,&mtype);CHKERRQ(ierr);
12054222ddf1SHong Zhang   ierr = MatSetType(C,mtype);CHKERRQ(ierr);
12064222ddf1SHong Zhang   ierr = MatMPIAIJSetPreallocation(C,0,dnz,0,onz);CHKERRQ(ierr);
12070926fe31SStefano Zampini   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
120817f75172Sandi selinger 
12094222ddf1SHong Zhang   ierr = MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api);CHKERRQ(ierr);
12104222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
12114222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
12120926fe31SStefano Zampini   ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
121317f75172Sandi selinger 
12144222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
12154222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
1216a9d7e0ccSandi selinger 
12174222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
12186718818eSStefano Zampini   C->product->data    = ptap;
12196718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
1220a9d7e0ccSandi selinger 
1221a9d7e0ccSandi selinger   /* set MatInfo */
122273b67375Sandi selinger   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
122373b67375Sandi selinger   if (afill < 1.0) afill = 1.0;
12244222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
12254222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
12264222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1227a9d7e0ccSandi selinger 
1228a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO)
1229a9d7e0ccSandi selinger   if (api[am]) {
12304222ddf1SHong Zhang     ierr = PetscInfo3(C,"Reallocs %D; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill);CHKERRQ(ierr);
12314222ddf1SHong Zhang     ierr = PetscInfo1(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill);CHKERRQ(ierr);
1232a9d7e0ccSandi selinger   } else {
12334222ddf1SHong Zhang     ierr = PetscInfo(C,"Empty matrix product\n");CHKERRQ(ierr);
1234a9d7e0ccSandi selinger   }
1235a9d7e0ccSandi selinger #endif
1236a9d7e0ccSandi selinger 
123773b67375Sandi selinger   ierr = MatDestroy(&aopoth);CHKERRQ(ierr);
123873b67375Sandi selinger   ierr = MatDestroy(&adpd);CHKERRQ(ierr);
123973b67375Sandi selinger   ierr = PetscFree(j_temp);CHKERRQ(ierr);
124073b67375Sandi selinger   ierr = PetscFree(adpoj);CHKERRQ(ierr);
124173b67375Sandi selinger   ierr = PetscFree(adpoi);CHKERRQ(ierr);
1242a9d7e0ccSandi selinger   PetscFunctionReturn(0);
1243a9d7e0ccSandi selinger }
1244a9d7e0ccSandi selinger 
1245f96d37fcSHong Zhang /*-------------------------------------------------------------------------*/
1246c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */
1247c216dbf3SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P,Mat A,Mat C)
1248c216dbf3SHong Zhang {
1249c216dbf3SHong Zhang   PetscErrorCode ierr;
12506718818eSStefano Zampini   Mat_APMPI      *ptap;
125160552ceaSHong Zhang   Mat            Pt;
1252c216dbf3SHong Zhang 
1253c216dbf3SHong Zhang   PetscFunctionBegin;
12546718818eSStefano Zampini   MatCheckProduct(C,3);
12556718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
12566718818eSStefano Zampini   if (!ptap) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
12576718818eSStefano Zampini   if (!ptap->Pt) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
125860552ceaSHong Zhang 
125960552ceaSHong Zhang   Pt   = ptap->Pt;
1260c216dbf3SHong Zhang   ierr = MatTranspose(P,MAT_REUSE_MATRIX,&Pt);CHKERRQ(ierr);
12614222ddf1SHong Zhang   ierr = MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt,A,C);CHKERRQ(ierr);
1262f96d37fcSHong Zhang   PetscFunctionReturn(0);
1263f96d37fcSHong Zhang }
1264f96d37fcSHong Zhang 
1265c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */
12664222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P,Mat A,PetscReal fill,Mat C)
1267912837bbSHong Zhang {
1268912837bbSHong Zhang   PetscErrorCode      ierr;
12693cdca5ebSHong Zhang   Mat_APMPI           *ptap;
12706718818eSStefano Zampini   Mat_MPIAIJ          *p=(Mat_MPIAIJ*)P->data;
1271912837bbSHong Zhang   MPI_Comm            comm;
1272912837bbSHong Zhang   PetscMPIInt         size,rank;
1273912837bbSHong Zhang   PetscFreeSpaceList  free_space=NULL,current_space=NULL;
12744ede91e3SHong Zhang   PetscInt            pn=P->cmap->n,aN=A->cmap->N,an=A->cmap->n;
127569be949aSStefano Zampini   PetscInt            *lnk,i,k,nsend,rstart;
1276912837bbSHong Zhang   PetscBT             lnkbt;
1277ec4bef21SJose E. Roman   PetscMPIInt         tagi,tagj,*len_si,*len_s,*len_ri,nrecv;
1278ec4bef21SJose E. Roman   PETSC_UNUSED PetscMPIInt icompleted=0;
12798c78258cSHong Zhang   PetscInt            **buf_rj,**buf_ri,**buf_ri_k,row,ncols,*cols;
12807f3e1f30SHong Zhang   PetscInt            len,proc,*dnz,*onz,*owners,nzi;
1281912837bbSHong Zhang   PetscInt            nrows,*buf_s,*buf_si,*buf_si_i,**nextrow,**nextci;
1282912837bbSHong Zhang   MPI_Request         *swaits,*rwaits;
1283912837bbSHong Zhang   MPI_Status          *sstatus,rstatus;
1284912837bbSHong Zhang   PetscLayout         rowmap;
1285912837bbSHong Zhang   PetscInt            *owners_co,*coi,*coj;    /* i and j array of (p->B)^T*A*P - used in the communication */
1286912837bbSHong Zhang   PetscMPIInt         *len_r,*id_r;    /* array of length of comm->size, store send/recv matrix values */
12877f3e1f30SHong Zhang   PetscInt            *Jptr,*prmap=p->garray,con,j,Crmax;
12884ede91e3SHong Zhang   Mat_SeqAIJ          *a_loc,*c_loc,*c_oth;
1289912837bbSHong Zhang   PetscTable          ta;
1290b92f168fSBarry Smith   MatType             mtype;
1291e83e5f86SFande Kong   const char          *prefix;
1292912837bbSHong Zhang 
1293912837bbSHong Zhang   PetscFunctionBegin;
1294912837bbSHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1295ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
1296ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr);
1297912837bbSHong Zhang 
12984222ddf1SHong Zhang   /* create symbolic parallel matrix C */
1299b92f168fSBarry Smith   ierr = MatGetType(A,&mtype);CHKERRQ(ierr);
13004222ddf1SHong Zhang   ierr = MatSetType(C,mtype);CHKERRQ(ierr);
1301912837bbSHong Zhang 
13024222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
1303912837bbSHong Zhang 
13043cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
1305912837bbSHong Zhang   ierr = PetscNew(&ptap);CHKERRQ(ierr);
1306912837bbSHong Zhang   ptap->reuse = MAT_INITIAL_MATRIX;
1307912837bbSHong Zhang 
1308912837bbSHong Zhang   /* (0) compute Rd = Pd^T, Ro = Po^T  */
1309912837bbSHong Zhang   /* --------------------------------- */
1310912837bbSHong Zhang   ierr = MatTranspose_SeqAIJ(p->A,MAT_INITIAL_MATRIX,&ptap->Rd);CHKERRQ(ierr);
1311912837bbSHong Zhang   ierr = MatTranspose_SeqAIJ(p->B,MAT_INITIAL_MATRIX,&ptap->Ro);CHKERRQ(ierr);
1312912837bbSHong Zhang 
1313669e9c86SHong Zhang   /* (1) compute symbolic A_loc */
1314669e9c86SHong Zhang   /* ---------------------------*/
13154ede91e3SHong Zhang   ierr = MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&ptap->A_loc);CHKERRQ(ierr);
1316912837bbSHong Zhang 
13174ede91e3SHong Zhang   /* (2-1) compute symbolic C_oth = Ro*A_loc  */
1318912837bbSHong Zhang   /* ------------------------------------ */
1319e83e5f86SFande Kong   ierr = MatGetOptionsPrefix(A,&prefix);CHKERRQ(ierr);
1320e83e5f86SFande Kong   ierr = MatSetOptionsPrefix(ptap->Ro,prefix);CHKERRQ(ierr);
1321e83e5f86SFande Kong   ierr = MatAppendOptionsPrefix(ptap->Ro,"inner_offdiag_");CHKERRQ(ierr);
13224222ddf1SHong Zhang   ierr = MatCreate(PETSC_COMM_SELF,&ptap->C_oth);CHKERRQ(ierr);
13234222ddf1SHong Zhang   ierr = MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro,ptap->A_loc,fill,ptap->C_oth);CHKERRQ(ierr);
1324912837bbSHong Zhang 
1325912837bbSHong Zhang   /* (3) send coj of C_oth to other processors  */
1326912837bbSHong Zhang   /* ------------------------------------------ */
1327912837bbSHong Zhang   /* determine row ownership */
1328912837bbSHong Zhang   ierr = PetscLayoutCreate(comm,&rowmap);CHKERRQ(ierr);
1329912837bbSHong Zhang   rowmap->n  = pn;
1330912837bbSHong Zhang   rowmap->bs = 1;
1331912837bbSHong Zhang   ierr   = PetscLayoutSetUp(rowmap);CHKERRQ(ierr);
1332912837bbSHong Zhang   owners = rowmap->range;
1333912837bbSHong Zhang 
1334912837bbSHong Zhang   /* determine the number of messages to send, their lengths */
1335912837bbSHong Zhang   ierr = PetscMalloc4(size,&len_s,size,&len_si,size,&sstatus,size+2,&owners_co);CHKERRQ(ierr);
1336580bdb30SBarry Smith   ierr = PetscArrayzero(len_s,size);CHKERRQ(ierr);
1337580bdb30SBarry Smith   ierr = PetscArrayzero(len_si,size);CHKERRQ(ierr);
1338912837bbSHong Zhang 
1339912837bbSHong Zhang   c_oth = (Mat_SeqAIJ*)ptap->C_oth->data;
1340912837bbSHong Zhang   coi   = c_oth->i; coj = c_oth->j;
1341912837bbSHong Zhang   con   = ptap->C_oth->rmap->n;
1342912837bbSHong Zhang   proc  = 0;
1343912837bbSHong Zhang   for (i=0; i<con; i++) {
1344912837bbSHong Zhang     while (prmap[i] >= owners[proc+1]) proc++;
13457f3e1f30SHong Zhang     len_si[proc]++;               /* num of rows in Co(=Pt*A) to be sent to [proc] */
1346912837bbSHong Zhang     len_s[proc] += coi[i+1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */
1347912837bbSHong Zhang   }
1348912837bbSHong Zhang 
1349912837bbSHong Zhang   len          = 0; /* max length of buf_si[], see (4) */
1350912837bbSHong Zhang   owners_co[0] = 0;
1351912837bbSHong Zhang   nsend        = 0;
1352912837bbSHong Zhang   for (proc=0; proc<size; proc++) {
1353912837bbSHong Zhang     owners_co[proc+1] = owners_co[proc] + len_si[proc];
1354912837bbSHong Zhang     if (len_s[proc]) {
1355912837bbSHong Zhang       nsend++;
1356912837bbSHong Zhang       len_si[proc] = 2*(len_si[proc] + 1); /* length of buf_si to be sent to [proc] */
1357912837bbSHong Zhang       len         += len_si[proc];
1358912837bbSHong Zhang     }
1359912837bbSHong Zhang   }
1360912837bbSHong Zhang 
1361912837bbSHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
1362912837bbSHong Zhang   ierr = PetscGatherNumberOfMessages(comm,NULL,len_s,&nrecv);CHKERRQ(ierr);
1363912837bbSHong Zhang   ierr = PetscGatherMessageLengths2(comm,nsend,nrecv,len_s,len_si,&id_r,&len_r,&len_ri);CHKERRQ(ierr);
1364912837bbSHong Zhang 
1365912837bbSHong Zhang   /* post the Irecv and Isend of coj */
1366912837bbSHong Zhang   ierr = PetscCommGetNewTag(comm,&tagj);CHKERRQ(ierr);
1367912837bbSHong Zhang   ierr = PetscPostIrecvInt(comm,tagj,nrecv,id_r,len_r,&buf_rj,&rwaits);CHKERRQ(ierr);
1368912837bbSHong Zhang   ierr = PetscMalloc1(nsend+1,&swaits);CHKERRQ(ierr);
1369912837bbSHong Zhang   for (proc=0, k=0; proc<size; proc++) {
1370912837bbSHong Zhang     if (!len_s[proc]) continue;
1371912837bbSHong Zhang     i    = owners_co[proc];
1372ffc4695bSBarry Smith     ierr = MPI_Isend(coj+coi[i],len_s[proc],MPIU_INT,proc,tagj,comm,swaits+k);CHKERRMPI(ierr);
1373912837bbSHong Zhang     k++;
1374912837bbSHong Zhang   }
1375912837bbSHong Zhang 
13767f3e1f30SHong Zhang   /* (2-2) compute symbolic C_loc = Rd*A_loc */
1377912837bbSHong Zhang   /* ---------------------------------------- */
1378e83e5f86SFande Kong   ierr = MatSetOptionsPrefix(ptap->Rd,prefix);CHKERRQ(ierr);
1379e83e5f86SFande Kong   ierr = MatAppendOptionsPrefix(ptap->Rd,"inner_diag_");CHKERRQ(ierr);
13804222ddf1SHong Zhang   ierr = MatCreate(PETSC_COMM_SELF,&ptap->C_loc);CHKERRQ(ierr);
13814222ddf1SHong Zhang   ierr = MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd,ptap->A_loc,fill,ptap->C_loc);CHKERRQ(ierr);
1382912837bbSHong Zhang   c_loc = (Mat_SeqAIJ*)ptap->C_loc->data;
1383912837bbSHong Zhang 
1384912837bbSHong Zhang   /* receives coj are complete */
1385912837bbSHong Zhang   for (i=0; i<nrecv; i++) {
1386ffc4695bSBarry Smith     ierr = MPI_Waitany(nrecv,rwaits,&icompleted,&rstatus);CHKERRMPI(ierr);
1387912837bbSHong Zhang   }
1388912837bbSHong Zhang   ierr = PetscFree(rwaits);CHKERRQ(ierr);
1389ffc4695bSBarry Smith   if (nsend) {ierr = MPI_Waitall(nsend,swaits,sstatus);CHKERRMPI(ierr);}
1390912837bbSHong Zhang 
1391912837bbSHong Zhang   /* add received column indices into ta to update Crmax */
13924ede91e3SHong Zhang   a_loc = (Mat_SeqAIJ*)(ptap->A_loc)->data;
1393669e9c86SHong Zhang 
1394669e9c86SHong Zhang   /* create and initialize a linked list */
13954ede91e3SHong Zhang   ierr = PetscTableCreate(an,aN,&ta);CHKERRQ(ierr); /* for compute Crmax */
13964ede91e3SHong Zhang   MatRowMergeMax_SeqAIJ(a_loc,ptap->A_loc->rmap->N,ta);
1397669e9c86SHong Zhang 
1398912837bbSHong Zhang   for (k=0; k<nrecv; k++) {/* k-th received message */
1399912837bbSHong Zhang     Jptr = buf_rj[k];
1400912837bbSHong Zhang     for (j=0; j<len_r[k]; j++) {
1401912837bbSHong Zhang       ierr = PetscTableAdd(ta,*(Jptr+j)+1,1,INSERT_VALUES);CHKERRQ(ierr);
1402912837bbSHong Zhang     }
1403912837bbSHong Zhang   }
1404912837bbSHong Zhang   ierr = PetscTableGetCount(ta,&Crmax);CHKERRQ(ierr);
1405912837bbSHong Zhang   ierr = PetscTableDestroy(&ta);CHKERRQ(ierr);
1406912837bbSHong Zhang 
1407912837bbSHong Zhang   /* (4) send and recv coi */
1408912837bbSHong Zhang   /*-----------------------*/
1409912837bbSHong Zhang   ierr   = PetscCommGetNewTag(comm,&tagi);CHKERRQ(ierr);
1410912837bbSHong Zhang   ierr   = PetscPostIrecvInt(comm,tagi,nrecv,id_r,len_ri,&buf_ri,&rwaits);CHKERRQ(ierr);
1411912837bbSHong Zhang   ierr   = PetscMalloc1(len+1,&buf_s);CHKERRQ(ierr);
1412912837bbSHong Zhang   buf_si = buf_s;  /* points to the beginning of k-th msg to be sent */
1413912837bbSHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1414912837bbSHong Zhang     if (!len_s[proc]) continue;
1415912837bbSHong Zhang     /* form outgoing message for i-structure:
1416912837bbSHong Zhang          buf_si[0]:                 nrows to be sent
1417912837bbSHong Zhang                [1:nrows]:           row index (global)
1418912837bbSHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1419912837bbSHong Zhang     */
1420912837bbSHong Zhang     /*-------------------------------------------*/
1421912837bbSHong Zhang     nrows       = len_si[proc]/2 - 1; /* num of rows in Co to be sent to [proc] */
1422912837bbSHong Zhang     buf_si_i    = buf_si + nrows+1;
1423912837bbSHong Zhang     buf_si[0]   = nrows;
1424912837bbSHong Zhang     buf_si_i[0] = 0;
1425912837bbSHong Zhang     nrows       = 0;
1426912837bbSHong Zhang     for (i=owners_co[proc]; i<owners_co[proc+1]; i++) {
1427912837bbSHong Zhang       nzi = coi[i+1] - coi[i];
1428912837bbSHong Zhang       buf_si_i[nrows+1] = buf_si_i[nrows] + nzi;  /* i-structure */
1429912837bbSHong Zhang       buf_si[nrows+1]   = prmap[i] -owners[proc]; /* local row index */
1430912837bbSHong Zhang       nrows++;
1431912837bbSHong Zhang     }
1432ffc4695bSBarry Smith     ierr = MPI_Isend(buf_si,len_si[proc],MPIU_INT,proc,tagi,comm,swaits+k);CHKERRMPI(ierr);
1433912837bbSHong Zhang     k++;
1434912837bbSHong Zhang     buf_si += len_si[proc];
1435912837bbSHong Zhang   }
1436912837bbSHong Zhang   for (i=0; i<nrecv; i++) {
1437ffc4695bSBarry Smith     ierr = MPI_Waitany(nrecv,rwaits,&icompleted,&rstatus);CHKERRMPI(ierr);
1438912837bbSHong Zhang   }
1439912837bbSHong Zhang   ierr = PetscFree(rwaits);CHKERRQ(ierr);
1440ffc4695bSBarry Smith   if (nsend) {ierr = MPI_Waitall(nsend,swaits,sstatus);CHKERRMPI(ierr);}
1441912837bbSHong Zhang 
1442912837bbSHong Zhang   ierr = PetscFree4(len_s,len_si,sstatus,owners_co);CHKERRQ(ierr);
1443912837bbSHong Zhang   ierr = PetscFree(len_ri);CHKERRQ(ierr);
1444912837bbSHong Zhang   ierr = PetscFree(swaits);CHKERRQ(ierr);
1445912837bbSHong Zhang   ierr = PetscFree(buf_s);CHKERRQ(ierr);
1446912837bbSHong Zhang 
14474222ddf1SHong Zhang   /* (5) compute the local portion of C      */
1448912837bbSHong Zhang   /* ------------------------------------------ */
14494222ddf1SHong Zhang   /* set initial free space to be Crmax, sufficient for holding nozeros in each row of C */
1450912837bbSHong Zhang   ierr          = PetscFreeSpaceGet(Crmax,&free_space);CHKERRQ(ierr);
1451912837bbSHong Zhang   current_space = free_space;
1452912837bbSHong Zhang 
1453912837bbSHong Zhang   ierr = PetscMalloc3(nrecv,&buf_ri_k,nrecv,&nextrow,nrecv,&nextci);CHKERRQ(ierr);
1454912837bbSHong Zhang   for (k=0; k<nrecv; k++) {
1455912837bbSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1456912837bbSHong Zhang     nrows       = *buf_ri_k[k];
1457912837bbSHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;  /* next row number of k-th recved i-structure */
1458912837bbSHong Zhang     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* poins to the next i-structure of k-th recved i-structure  */
1459912837bbSHong Zhang   }
1460912837bbSHong Zhang 
14614ede91e3SHong Zhang   ierr = MatPreallocateInitialize(comm,pn,an,dnz,onz);CHKERRQ(ierr);
14624ede91e3SHong Zhang   ierr = PetscLLCondensedCreate(Crmax,aN,&lnk,&lnkbt);CHKERRQ(ierr);
14638c78258cSHong Zhang   for (i=0; i<pn; i++) { /* for each local row of C */
14644222ddf1SHong Zhang     /* add C_loc into C */
1465912837bbSHong Zhang     nzi  = c_loc->i[i+1] - c_loc->i[i];
1466912837bbSHong Zhang     Jptr = c_loc->j + c_loc->i[i];
1467912837bbSHong Zhang     ierr = PetscLLCondensedAddSorted(nzi,Jptr,lnk,lnkbt);CHKERRQ(ierr);
1468912837bbSHong Zhang 
1469912837bbSHong Zhang     /* add received col data into lnk */
1470912837bbSHong Zhang     for (k=0; k<nrecv; k++) { /* k-th received message */
1471912837bbSHong Zhang       if (i == *nextrow[k]) { /* i-th row */
1472912837bbSHong Zhang         nzi  = *(nextci[k]+1) - *nextci[k];
1473912837bbSHong Zhang         Jptr = buf_rj[k] + *nextci[k];
1474912837bbSHong Zhang         ierr = PetscLLCondensedAddSorted(nzi,Jptr,lnk,lnkbt);CHKERRQ(ierr);
1475912837bbSHong Zhang         nextrow[k]++; nextci[k]++;
1476912837bbSHong Zhang       }
1477912837bbSHong Zhang     }
14788c78258cSHong Zhang 
14798c78258cSHong Zhang     /* add missing diagonal entry */
14808c78258cSHong Zhang     if (C->force_diagonals) {
14818c78258cSHong Zhang       k = i + owners[rank]; /* column index */
14828c78258cSHong Zhang       ierr = PetscLLCondensedAddSorted(1,&k,lnk,lnkbt);CHKERRQ(ierr);
14838c78258cSHong Zhang     }
14848c78258cSHong Zhang 
1485912837bbSHong Zhang     nzi = lnk[0];
1486912837bbSHong Zhang 
1487912837bbSHong Zhang     /* copy data into free space, then initialize lnk */
14884ede91e3SHong Zhang     ierr = PetscLLCondensedClean(aN,nzi,current_space->array,lnk,lnkbt);CHKERRQ(ierr);
1489912837bbSHong Zhang     ierr = MatPreallocateSet(i+owners[rank],nzi,current_space->array,dnz,onz);CHKERRQ(ierr);
1490912837bbSHong Zhang   }
1491912837bbSHong Zhang   ierr = PetscFree3(buf_ri_k,nextrow,nextci);CHKERRQ(ierr);
1492912837bbSHong Zhang   ierr = PetscLLDestroy(lnk,lnkbt);CHKERRQ(ierr);
1493912837bbSHong Zhang   ierr = PetscFreeSpaceDestroy(free_space);CHKERRQ(ierr);
1494912837bbSHong Zhang 
1495912837bbSHong Zhang   /* local sizes and preallocation */
14964222ddf1SHong Zhang   ierr = MatSetSizes(C,pn,an,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
14974222ddf1SHong Zhang   if (P->cmap->bs > 0) {ierr = PetscLayoutSetBlockSize(C->rmap,P->cmap->bs);CHKERRQ(ierr);}
14984222ddf1SHong Zhang   if (A->cmap->bs > 0) {ierr = PetscLayoutSetBlockSize(C->cmap,A->cmap->bs);CHKERRQ(ierr);}
14994222ddf1SHong Zhang   ierr = MatMPIAIJSetPreallocation(C,0,dnz,0,onz);CHKERRQ(ierr);
1500912837bbSHong Zhang   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
1501912837bbSHong Zhang 
150269be949aSStefano Zampini   /* add C_loc and C_oth to C */
150369be949aSStefano Zampini   ierr = MatGetOwnershipRange(C,&rstart,NULL);CHKERRQ(ierr);
150469be949aSStefano Zampini   for (i=0; i<pn; i++) {
15058c78258cSHong Zhang     ncols = c_loc->i[i+1] - c_loc->i[i];
15068c78258cSHong Zhang     cols  = c_loc->j + c_loc->i[i];
15078c78258cSHong Zhang     row   = rstart + i;
150898ebff05SHong Zhang     ierr = MatSetValues(C,1,(const PetscInt*)&row,ncols,(const PetscInt*)cols,NULL,INSERT_VALUES);CHKERRQ(ierr);
15098c78258cSHong Zhang 
15108c78258cSHong Zhang     if (C->force_diagonals) {
15118c78258cSHong Zhang       ierr = MatSetValues(C,1,(const PetscInt*)&row,1,(const PetscInt*)&row,NULL,INSERT_VALUES);CHKERRQ(ierr);
15128c78258cSHong Zhang     }
151369be949aSStefano Zampini   }
151469be949aSStefano Zampini   for (i=0; i<con; i++) {
15158c78258cSHong Zhang     ncols = c_oth->i[i+1] - c_oth->i[i];
15168c78258cSHong Zhang     cols  = c_oth->j + c_oth->i[i];
15178c78258cSHong Zhang     row   = prmap[i];
151898ebff05SHong Zhang     ierr = MatSetValues(C,1,(const PetscInt*)&row,ncols,(const PetscInt*)cols,NULL,INSERT_VALUES);CHKERRQ(ierr);
151969be949aSStefano Zampini   }
152069be949aSStefano Zampini   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
152169be949aSStefano Zampini   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15220926fe31SStefano Zampini   ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
152369be949aSStefano Zampini 
1524912837bbSHong Zhang   /* members in merge */
1525912837bbSHong Zhang   ierr = PetscFree(id_r);CHKERRQ(ierr);
1526912837bbSHong Zhang   ierr = PetscFree(len_r);CHKERRQ(ierr);
1527912837bbSHong Zhang   ierr = PetscFree(buf_ri[0]);CHKERRQ(ierr);
1528912837bbSHong Zhang   ierr = PetscFree(buf_ri);CHKERRQ(ierr);
1529912837bbSHong Zhang   ierr = PetscFree(buf_rj[0]);CHKERRQ(ierr);
1530912837bbSHong Zhang   ierr = PetscFree(buf_rj);CHKERRQ(ierr);
1531912837bbSHong Zhang   ierr = PetscLayoutDestroy(&rowmap);CHKERRQ(ierr);
1532912837bbSHong Zhang 
15334222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
15346718818eSStefano Zampini   C->product->data    = ptap;
15356718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
1536912837bbSHong Zhang   PetscFunctionReturn(0);
1537912837bbSHong Zhang }
1538912837bbSHong Zhang 
1539912837bbSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P,Mat A,Mat C)
1540912837bbSHong Zhang {
1541912837bbSHong Zhang   PetscErrorCode    ierr;
15426718818eSStefano Zampini   Mat_MPIAIJ        *p=(Mat_MPIAIJ*)P->data;
1543669e9c86SHong Zhang   Mat_SeqAIJ        *c_seq;
15446718818eSStefano Zampini   Mat_APMPI         *ptap;
1545669e9c86SHong Zhang   Mat               A_loc,C_loc,C_oth;
1546912837bbSHong Zhang   PetscInt          i,rstart,rend,cm,ncols,row;
1547912837bbSHong Zhang   const PetscInt    *cols;
1548912837bbSHong Zhang   const PetscScalar *vals;
1549912837bbSHong Zhang 
1550912837bbSHong Zhang   PetscFunctionBegin;
15516718818eSStefano Zampini   MatCheckProduct(C,3);
15526718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
15536718818eSStefano Zampini   if (!ptap) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
15546718818eSStefano Zampini   if (!ptap->A_loc) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
1555912837bbSHong Zhang   ierr = MatZeroEntries(C);CHKERRQ(ierr);
1556912837bbSHong Zhang 
1557912837bbSHong Zhang   if (ptap->reuse == MAT_REUSE_MATRIX) {
1558669e9c86SHong Zhang     /* These matrices are obtained in MatTransposeMatMultSymbolic() */
1559669e9c86SHong Zhang     /* 1) get R = Pd^T, Ro = Po^T */
1560669e9c86SHong Zhang     /*----------------------------*/
1561912837bbSHong Zhang     ierr = MatTranspose_SeqAIJ(p->A,MAT_REUSE_MATRIX,&ptap->Rd);CHKERRQ(ierr);
1562912837bbSHong Zhang     ierr = MatTranspose_SeqAIJ(p->B,MAT_REUSE_MATRIX,&ptap->Ro);CHKERRQ(ierr);
1563669e9c86SHong Zhang 
1564669e9c86SHong Zhang     /* 2) compute numeric A_loc */
1565669e9c86SHong Zhang     /*--------------------------*/
15664ede91e3SHong Zhang     ierr = MatMPIAIJGetLocalMat(A,MAT_REUSE_MATRIX,&ptap->A_loc);CHKERRQ(ierr);
1567912837bbSHong Zhang   }
1568912837bbSHong Zhang 
1569669e9c86SHong Zhang   /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */
15704ede91e3SHong Zhang   A_loc = ptap->A_loc;
1571669e9c86SHong Zhang   ierr = ((ptap->C_loc)->ops->matmultnumeric)(ptap->Rd,A_loc,ptap->C_loc);CHKERRQ(ierr);
1572669e9c86SHong Zhang   ierr = ((ptap->C_oth)->ops->matmultnumeric)(ptap->Ro,A_loc,ptap->C_oth);CHKERRQ(ierr);
1573912837bbSHong Zhang   C_loc = ptap->C_loc;
1574912837bbSHong Zhang   C_oth = ptap->C_oth;
1575912837bbSHong Zhang 
157669be949aSStefano Zampini   /* add C_loc and C_oth to C */
1577912837bbSHong Zhang   ierr = MatGetOwnershipRange(C,&rstart,&rend);CHKERRQ(ierr);
1578912837bbSHong Zhang 
1579912837bbSHong Zhang   /* C_loc -> C */
1580912837bbSHong Zhang   cm    = C_loc->rmap->N;
1581912837bbSHong Zhang   c_seq = (Mat_SeqAIJ*)C_loc->data;
1582912837bbSHong Zhang   cols = c_seq->j;
1583912837bbSHong Zhang   vals = c_seq->a;
1584912837bbSHong Zhang   for (i=0; i<cm; i++) {
1585912837bbSHong Zhang     ncols = c_seq->i[i+1] - c_seq->i[i];
1586912837bbSHong Zhang     row = rstart + i;
1587912837bbSHong Zhang     ierr = MatSetValues(C,1,&row,ncols,cols,vals,ADD_VALUES);CHKERRQ(ierr);
1588912837bbSHong Zhang     cols += ncols; vals += ncols;
1589912837bbSHong Zhang   }
1590912837bbSHong Zhang 
1591912837bbSHong Zhang   /* Co -> C, off-processor part */
1592912837bbSHong Zhang   cm    = C_oth->rmap->N;
1593912837bbSHong Zhang   c_seq = (Mat_SeqAIJ*)C_oth->data;
1594912837bbSHong Zhang   cols  = c_seq->j;
1595912837bbSHong Zhang   vals  = c_seq->a;
1596912837bbSHong Zhang   for (i=0; i<cm; i++) {
1597912837bbSHong Zhang     ncols = c_seq->i[i+1] - c_seq->i[i];
1598912837bbSHong Zhang     row = p->garray[i];
1599912837bbSHong Zhang     ierr = MatSetValues(C,1,&row,ncols,cols,vals,ADD_VALUES);CHKERRQ(ierr);
1600912837bbSHong Zhang     cols += ncols; vals += ncols;
1601912837bbSHong Zhang   }
1602912837bbSHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1603912837bbSHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16040926fe31SStefano Zampini   ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1605912837bbSHong Zhang 
1606912837bbSHong Zhang   ptap->reuse = MAT_REUSE_MATRIX;
1607912837bbSHong Zhang   PetscFunctionReturn(0);
1608912837bbSHong Zhang }
1609912837bbSHong Zhang 
16106da69ca6SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P,Mat A,Mat C)
1611d6ab1dc0SHong Zhang {
1612d6ab1dc0SHong Zhang   PetscErrorCode      ierr;
1613d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
16146718818eSStefano Zampini   Mat_MPIAIJ          *p =(Mat_MPIAIJ*)P->data;
1615d6ab1dc0SHong Zhang   Mat_SeqAIJ          *pd=(Mat_SeqAIJ*)(p->A)->data,*po=(Mat_SeqAIJ*)(p->B)->data;
16163cdca5ebSHong Zhang   Mat_APMPI           *ptap;
1617e745005bSHong Zhang   PetscInt            *adj;
1618e745005bSHong Zhang   PetscInt            i,j,k,anz,pnz,row,*cj,nexta;
1619e745005bSHong Zhang   MatScalar           *ada,*ca,valtmp;
1620d6ab1dc0SHong Zhang   PetscInt            am=A->rmap->n,cm=C->rmap->n,pon=(p->B)->cmap->n;
1621ce94432eSBarry Smith   MPI_Comm            comm;
1622d6ab1dc0SHong Zhang   PetscMPIInt         size,rank,taga,*len_s;
1623d6ab1dc0SHong Zhang   PetscInt            *owners,proc,nrows,**buf_ri_k,**nextrow,**nextci;
1624d6ab1dc0SHong Zhang   PetscInt            **buf_ri,**buf_rj;
1625d6ab1dc0SHong Zhang   PetscInt            cnz=0,*bj_i,*bi,*bj,bnz,nextcj;  /* bi,bj,ba: local array of C(mpi mat) */
1626d6ab1dc0SHong Zhang   MPI_Request         *s_waits,*r_waits;
1627d6ab1dc0SHong Zhang   MPI_Status          *status;
1628d6ab1dc0SHong Zhang   MatScalar           **abuf_r,*ba_i,*pA,*coa,*ba;
1629ce496241SStefano Zampini   const PetscScalar   *dummy;
16304e201bd7SHong Zhang   PetscInt            *ai,*aj,*coi,*coj,*poJ,*pdJ;
1631d6ab1dc0SHong Zhang   Mat                 A_loc;
1632d6ab1dc0SHong Zhang   Mat_SeqAIJ          *a_loc;
1633d6ab1dc0SHong Zhang 
1634d6ab1dc0SHong Zhang   PetscFunctionBegin;
16356718818eSStefano Zampini   MatCheckProduct(C,3);
16366718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
16376718818eSStefano Zampini   if (!ptap) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
16386718818eSStefano Zampini   if (!ptap->A_loc) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
1639ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
1640ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
1641ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr);
1642d6ab1dc0SHong Zhang 
1643d6ab1dc0SHong Zhang   merge = ptap->merge;
1644d6ab1dc0SHong Zhang 
1645e745005bSHong Zhang   /* 2) compute numeric C_seq = P_loc^T*A_loc */
1646e745005bSHong Zhang   /*------------------------------------------*/
1647d6ab1dc0SHong Zhang   /* get data from symbolic products */
1648d6ab1dc0SHong Zhang   coi    = merge->coi; coj = merge->coj;
1649854ce69bSBarry Smith   ierr   = PetscCalloc1(coi[pon]+1,&coa);CHKERRQ(ierr);
1650d6ab1dc0SHong Zhang   bi     = merge->bi; bj = merge->bj;
1651d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
16521795a4d1SJed Brown   ierr   = PetscCalloc1(bi[cm]+1,&ba);CHKERRQ(ierr);
1653d6ab1dc0SHong Zhang 
1654d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
1655d6ab1dc0SHong Zhang   A_loc = ptap->A_loc;
1656d6ab1dc0SHong Zhang   ierr  = MatMPIAIJGetLocalMat(A,MAT_REUSE_MATRIX,&A_loc);CHKERRQ(ierr);
1657d6ab1dc0SHong Zhang   a_loc = (Mat_SeqAIJ*)(A_loc)->data;
1658d6ab1dc0SHong Zhang   ai    = a_loc->i;
1659d6ab1dc0SHong Zhang   aj    = a_loc->j;
1660d6ab1dc0SHong Zhang 
1661ce496241SStefano Zampini   /* trigger copy to CPU */
1662ce496241SStefano Zampini   ierr = MatSeqAIJGetArrayRead(p->A,&dummy);CHKERRQ(ierr);
1663ce496241SStefano Zampini   ierr = MatSeqAIJRestoreArrayRead(p->A,&dummy);CHKERRQ(ierr);
1664ce496241SStefano Zampini   ierr = MatSeqAIJGetArrayRead(p->B,&dummy);CHKERRQ(ierr);
1665ce496241SStefano Zampini   ierr = MatSeqAIJRestoreArrayRead(p->B,&dummy);CHKERRQ(ierr);
1666d6ab1dc0SHong Zhang   for (i=0; i<am; i++) {
1667d6ab1dc0SHong Zhang     anz = ai[i+1] - ai[i];
1668d6ab1dc0SHong Zhang     adj = aj + ai[i];
1669d6ab1dc0SHong Zhang     ada = a_loc->a + ai[i];
1670d6ab1dc0SHong Zhang 
1671d6ab1dc0SHong Zhang     /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */
1672e745005bSHong Zhang     /*-------------------------------------------------------------*/
1673d6ab1dc0SHong Zhang     /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */
1674d6ab1dc0SHong Zhang     pnz = po->i[i+1] - po->i[i];
1675d6ab1dc0SHong Zhang     poJ = po->j + po->i[i];
1676d6ab1dc0SHong Zhang     pA  = po->a + po->i[i];
1677d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1678d6ab1dc0SHong Zhang       row = poJ[j];
1679d6ab1dc0SHong Zhang       cj  = coj + coi[row];
1680d6ab1dc0SHong Zhang       ca  = coa + coi[row];
1681e745005bSHong Zhang       /* perform sparse axpy */
1682e745005bSHong Zhang       nexta  = 0;
1683d6ab1dc0SHong Zhang       valtmp = pA[j];
1684e745005bSHong Zhang       for (k=0; nexta<anz; k++) {
1685e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1686e745005bSHong Zhang           ca[k] += valtmp*ada[nexta];
1687e745005bSHong Zhang           nexta++;
1688d6ab1dc0SHong Zhang         }
1689e745005bSHong Zhang       }
1690e745005bSHong Zhang       ierr = PetscLogFlops(2.0*anz);CHKERRQ(ierr);
1691d6ab1dc0SHong Zhang     }
1692d6ab1dc0SHong Zhang 
1693d6ab1dc0SHong Zhang     /* put the value into Cd (diagonal part) */
1694d6ab1dc0SHong Zhang     pnz = pd->i[i+1] - pd->i[i];
1695d6ab1dc0SHong Zhang     pdJ = pd->j + pd->i[i];
1696d6ab1dc0SHong Zhang     pA  = pd->a + pd->i[i];
1697d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1698d6ab1dc0SHong Zhang       row = pdJ[j];
1699d6ab1dc0SHong Zhang       cj  = bj + bi[row];
1700d6ab1dc0SHong Zhang       ca  = ba + bi[row];
1701e745005bSHong Zhang       /* perform sparse axpy */
1702e745005bSHong Zhang       nexta  = 0;
1703d6ab1dc0SHong Zhang       valtmp = pA[j];
1704e745005bSHong Zhang       for (k=0; nexta<anz; k++) {
1705e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1706e745005bSHong Zhang           ca[k] += valtmp*ada[nexta];
1707e745005bSHong Zhang           nexta++;
1708d6ab1dc0SHong Zhang         }
1709e745005bSHong Zhang       }
1710e745005bSHong Zhang       ierr = PetscLogFlops(2.0*anz);CHKERRQ(ierr);
1711d6ab1dc0SHong Zhang     }
1712d6ab1dc0SHong Zhang   }
1713d6ab1dc0SHong Zhang 
1714d6ab1dc0SHong Zhang   /* 3) send and recv matrix values coa */
1715d6ab1dc0SHong Zhang   /*------------------------------------*/
1716d6ab1dc0SHong Zhang   buf_ri = merge->buf_ri;
1717d6ab1dc0SHong Zhang   buf_rj = merge->buf_rj;
1718d6ab1dc0SHong Zhang   len_s  = merge->len_s;
1719d6ab1dc0SHong Zhang   ierr   = PetscCommGetNewTag(comm,&taga);CHKERRQ(ierr);
1720d6ab1dc0SHong Zhang   ierr   = PetscPostIrecvScalar(comm,taga,merge->nrecv,merge->id_r,merge->len_r,&abuf_r,&r_waits);CHKERRQ(ierr);
1721d6ab1dc0SHong Zhang 
1722dcca6d9dSJed Brown   ierr = PetscMalloc2(merge->nsend+1,&s_waits,size,&status);CHKERRQ(ierr);
1723d6ab1dc0SHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1724d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1725d6ab1dc0SHong Zhang     i    = merge->owners_co[proc];
1726ffc4695bSBarry Smith     ierr = MPI_Isend(coa+coi[i],len_s[proc],MPIU_MATSCALAR,proc,taga,comm,s_waits+k);CHKERRMPI(ierr);
1727d6ab1dc0SHong Zhang     k++;
1728d6ab1dc0SHong Zhang   }
1729ffc4695bSBarry Smith   if (merge->nrecv) {ierr = MPI_Waitall(merge->nrecv,r_waits,status);CHKERRMPI(ierr);}
1730ffc4695bSBarry Smith   if (merge->nsend) {ierr = MPI_Waitall(merge->nsend,s_waits,status);CHKERRMPI(ierr);}
1731d6ab1dc0SHong Zhang 
1732d6ab1dc0SHong Zhang   ierr = PetscFree2(s_waits,status);CHKERRQ(ierr);
1733d6ab1dc0SHong Zhang   ierr = PetscFree(r_waits);CHKERRQ(ierr);
1734d6ab1dc0SHong Zhang   ierr = PetscFree(coa);CHKERRQ(ierr);
1735d6ab1dc0SHong Zhang 
1736d6ab1dc0SHong Zhang   /* 4) insert local Cseq and received values into Cmpi */
1737d6ab1dc0SHong Zhang   /*----------------------------------------------------*/
1738dcca6d9dSJed Brown   ierr = PetscMalloc3(merge->nrecv,&buf_ri_k,merge->nrecv,&nextrow,merge->nrecv,&nextci);CHKERRQ(ierr);
1739d6ab1dc0SHong Zhang   for (k=0; k<merge->nrecv; k++) {
1740e745005bSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1741d6ab1dc0SHong Zhang     nrows       = *(buf_ri_k[k]);
1742d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k]+1;  /* next row number of k-th recved i-structure */
1743d6ab1dc0SHong Zhang     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* poins to the next i-structure of k-th recved i-structure  */
1744d6ab1dc0SHong Zhang   }
1745d6ab1dc0SHong Zhang 
1746d6ab1dc0SHong Zhang   for (i=0; i<cm; i++) {
1747d6ab1dc0SHong Zhang     row  = owners[rank] + i; /* global row index of C_seq */
1748d6ab1dc0SHong Zhang     bj_i = bj + bi[i];  /* col indices of the i-th row of C */
1749d6ab1dc0SHong Zhang     ba_i = ba + bi[i];
1750d6ab1dc0SHong Zhang     bnz  = bi[i+1] - bi[i];
1751d6ab1dc0SHong Zhang     /* add received vals into ba */
1752d6ab1dc0SHong Zhang     for (k=0; k<merge->nrecv; k++) { /* k-th received message */
1753d6ab1dc0SHong Zhang       /* i-th row */
1754d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {
1755d6ab1dc0SHong Zhang         cnz    = *(nextci[k]+1) - *nextci[k];
1756d6ab1dc0SHong Zhang         cj     = buf_rj[k] + *(nextci[k]);
1757d6ab1dc0SHong Zhang         ca     = abuf_r[k] + *(nextci[k]);
1758d6ab1dc0SHong Zhang         nextcj = 0;
1759d6ab1dc0SHong Zhang         for (j=0; nextcj<cnz; j++) {
1760d6ab1dc0SHong Zhang           if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */
1761d6ab1dc0SHong Zhang             ba_i[j] += ca[nextcj++];
1762d6ab1dc0SHong Zhang           }
1763d6ab1dc0SHong Zhang         }
1764d6ab1dc0SHong Zhang         nextrow[k]++; nextci[k]++;
1765d6ab1dc0SHong Zhang         ierr = PetscLogFlops(2.0*cnz);CHKERRQ(ierr);
1766d6ab1dc0SHong Zhang       }
1767d6ab1dc0SHong Zhang     }
1768d6ab1dc0SHong Zhang     ierr = MatSetValues(C,1,&row,bnz,bj_i,ba_i,INSERT_VALUES);CHKERRQ(ierr);
1769d6ab1dc0SHong Zhang   }
1770d6ab1dc0SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1771d6ab1dc0SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1772d6ab1dc0SHong Zhang 
1773d6ab1dc0SHong Zhang   ierr = PetscFree(ba);CHKERRQ(ierr);
1774d6ab1dc0SHong Zhang   ierr = PetscFree(abuf_r[0]);CHKERRQ(ierr);
1775d6ab1dc0SHong Zhang   ierr = PetscFree(abuf_r);CHKERRQ(ierr);
1776d6ab1dc0SHong Zhang   ierr = PetscFree3(buf_ri_k,nextrow,nextci);CHKERRQ(ierr);
1777d6ab1dc0SHong Zhang   PetscFunctionReturn(0);
1778d6ab1dc0SHong Zhang }
1779d6ab1dc0SHong Zhang 
17804222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P,Mat A,PetscReal fill,Mat C)
1781d6ab1dc0SHong Zhang {
1782d6ab1dc0SHong Zhang   PetscErrorCode      ierr;
1783b419842dSStefano Zampini   Mat                 A_loc;
17843cdca5ebSHong Zhang   Mat_APMPI           *ptap;
17850298fd71SBarry Smith   PetscFreeSpaceList  free_space=NULL,current_space=NULL;
17866718818eSStefano Zampini   Mat_MPIAIJ          *p=(Mat_MPIAIJ*)P->data,*a=(Mat_MPIAIJ*)A->data;
1787d6ab1dc0SHong Zhang   PetscInt            *pdti,*pdtj,*poti,*potj,*ptJ;
1788d6ab1dc0SHong Zhang   PetscInt            nnz;
1789d6ab1dc0SHong Zhang   PetscInt            *lnk,*owners_co,*coi,*coj,i,k,pnz,row;
1790d6ab1dc0SHong Zhang   PetscInt            am  =A->rmap->n,pn=P->cmap->n;
1791ce94432eSBarry Smith   MPI_Comm            comm;
1792d6ab1dc0SHong Zhang   PetscMPIInt         size,rank,tagi,tagj,*len_si,*len_s,*len_ri;
1793d6ab1dc0SHong Zhang   PetscInt            **buf_rj,**buf_ri,**buf_ri_k;
1794d6ab1dc0SHong Zhang   PetscInt            len,proc,*dnz,*onz,*owners;
1795d6ab1dc0SHong Zhang   PetscInt            nzi,*bi,*bj;
1796d6ab1dc0SHong Zhang   PetscInt            nrows,*buf_s,*buf_si,*buf_si_i,**nextrow,**nextci;
1797d6ab1dc0SHong Zhang   MPI_Request         *swaits,*rwaits;
1798d6ab1dc0SHong Zhang   MPI_Status          *sstatus,rstatus;
1799d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
1800d6ab1dc0SHong Zhang   PetscInt            *ai,*aj,*Jptr,anz,*prmap=p->garray,pon,nspacedouble=0,j;
1801d6ab1dc0SHong Zhang   PetscReal           afill  =1.0,afill_tmp;
18024b38b95cSHong Zhang   PetscInt            rstart = P->cmap->rstart,rmax,aN=A->cmap->N,Armax;
1803b419842dSStefano Zampini   Mat_SeqAIJ          *a_loc;
18040acc65b4SHong Zhang   PetscTable          ta;
1805b92f168fSBarry Smith   MatType             mtype;
1806d6ab1dc0SHong Zhang 
1807d6ab1dc0SHong Zhang   PetscFunctionBegin;
1808ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1809d6ab1dc0SHong Zhang   /* check if matrix local sizes are compatible */
18106c4ed002SBarry Smith   if (A->rmap->rstart != P->rmap->rstart || A->rmap->rend != P->rmap->rend) SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != P (%D,%D)",A->rmap->rstart,A->rmap->rend,P->rmap->rstart,P->rmap->rend);
1811d6ab1dc0SHong Zhang 
1812ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
1813ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr);
1814d6ab1dc0SHong Zhang 
18153cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
1816b00a9115SJed Brown   ierr = PetscNew(&ptap);CHKERRQ(ierr);
1817d6ab1dc0SHong Zhang 
1818d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
1819d6ab1dc0SHong Zhang   ierr = MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&A_loc);CHKERRQ(ierr);
18202205254eSKarl Rupp 
1821d6ab1dc0SHong Zhang   ptap->A_loc = A_loc;
1822d6ab1dc0SHong Zhang   a_loc       = (Mat_SeqAIJ*)(A_loc)->data;
1823d6ab1dc0SHong Zhang   ai          = a_loc->i;
1824d6ab1dc0SHong Zhang   aj          = a_loc->j;
1825d6ab1dc0SHong Zhang 
1826d6ab1dc0SHong Zhang   /* determine symbolic Co=(p->B)^T*A - send to others */
1827d6ab1dc0SHong Zhang   /*----------------------------------------------------*/
1828b419842dSStefano Zampini   ierr = MatGetSymbolicTranspose_SeqAIJ(p->A,&pdti,&pdtj);CHKERRQ(ierr);
1829b419842dSStefano Zampini   ierr = MatGetSymbolicTranspose_SeqAIJ(p->B,&poti,&potj);CHKERRQ(ierr);
1830d6ab1dc0SHong Zhang   pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors
1831d6ab1dc0SHong Zhang                          >= (num of nonzero rows of C_seq) - pn */
1832854ce69bSBarry Smith   ierr   = PetscMalloc1(pon+1,&coi);CHKERRQ(ierr);
1833d6ab1dc0SHong Zhang   coi[0] = 0;
1834d6ab1dc0SHong Zhang 
1835d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */
1836f91af8c7SBarry Smith   nnz           = PetscRealIntMultTruncate(fill,PetscIntSumTruncate(poti[pon],ai[am]));
1837a2ea699eSBarry Smith   ierr          = PetscFreeSpaceGet(nnz,&free_space);CHKERRQ(ierr);
1838d6ab1dc0SHong Zhang   current_space = free_space;
183919f0e57aSHong Zhang 
1840d6ab1dc0SHong Zhang   /* create and initialize a linked list */
184133ba5e2fSHong Zhang   ierr = PetscTableCreate(A->cmap->n + a->B->cmap->N,aN,&ta);CHKERRQ(ierr);
18424b38b95cSHong Zhang   MatRowMergeMax_SeqAIJ(a_loc,am,ta);
18430acc65b4SHong Zhang   ierr = PetscTableGetCount(ta,&Armax);CHKERRQ(ierr);
184433ba5e2fSHong Zhang 
18450acc65b4SHong Zhang   ierr = PetscLLCondensedCreate_Scalable(Armax,&lnk);CHKERRQ(ierr);
1846d6ab1dc0SHong Zhang 
1847d6ab1dc0SHong Zhang   for (i=0; i<pon; i++) {
1848d6ab1dc0SHong Zhang     pnz = poti[i+1] - poti[i];
1849d6ab1dc0SHong Zhang     ptJ = potj + poti[i];
1850d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1851d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of A_loc == col of Pot */
1852d6ab1dc0SHong Zhang       anz  = ai[row+1] - ai[row];
1853d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1854d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
1855d6ab1dc0SHong Zhang       ierr = PetscLLCondensedAddSorted_Scalable(anz,Jptr,lnk);CHKERRQ(ierr);
1856d6ab1dc0SHong Zhang     }
1857d6ab1dc0SHong Zhang     nnz = lnk[0];
1858d6ab1dc0SHong Zhang 
1859d6ab1dc0SHong Zhang     /* If free space is not available, double the total space in the list */
1860d6ab1dc0SHong Zhang     if (current_space->local_remaining<nnz) {
1861f91af8c7SBarry Smith       ierr = PetscFreeSpaceGet(PetscIntSumTruncate(nnz,current_space->total_array_size),&current_space);CHKERRQ(ierr);
1862d6ab1dc0SHong Zhang       nspacedouble++;
1863d6ab1dc0SHong Zhang     }
1864d6ab1dc0SHong Zhang 
1865d6ab1dc0SHong Zhang     /* Copy data into free space, and zero out denserows */
1866d6ab1dc0SHong Zhang     ierr = PetscLLCondensedClean_Scalable(nnz,current_space->array,lnk);CHKERRQ(ierr);
18672205254eSKarl Rupp 
1868d6ab1dc0SHong Zhang     current_space->array           += nnz;
1869d6ab1dc0SHong Zhang     current_space->local_used      += nnz;
1870d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
18712205254eSKarl Rupp 
1872d6ab1dc0SHong Zhang     coi[i+1] = coi[i] + nnz;
1873d6ab1dc0SHong Zhang   }
1874d6ab1dc0SHong Zhang 
1875854ce69bSBarry Smith   ierr = PetscMalloc1(coi[pon]+1,&coj);CHKERRQ(ierr);
1876d6ab1dc0SHong Zhang   ierr = PetscFreeSpaceContiguous(&free_space,coj);CHKERRQ(ierr);
18770acc65b4SHong Zhang   ierr = PetscLLCondensedDestroy_Scalable(lnk);CHKERRQ(ierr); /* must destroy to get a new one for C */
18782205254eSKarl Rupp 
1879118727c9SMark F. Adams   afill_tmp = (PetscReal)coi[pon]/(poti[pon] + ai[am]+1);
1880d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
1881d6ab1dc0SHong Zhang 
1882d6ab1dc0SHong Zhang   /* send j-array (coj) of Co to other processors */
1883d6ab1dc0SHong Zhang   /*----------------------------------------------*/
1884d6ab1dc0SHong Zhang   /* determine row ownership */
1885b00a9115SJed Brown   ierr = PetscNew(&merge);CHKERRQ(ierr);
1886d6ab1dc0SHong Zhang   ierr = PetscLayoutCreate(comm,&merge->rowmap);CHKERRQ(ierr);
18872205254eSKarl Rupp 
1888d6ab1dc0SHong Zhang   merge->rowmap->n  = pn;
1889d6ab1dc0SHong Zhang   merge->rowmap->bs = 1;
18902205254eSKarl Rupp 
1891d6ab1dc0SHong Zhang   ierr   = PetscLayoutSetUp(merge->rowmap);CHKERRQ(ierr);
1892d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
1893d6ab1dc0SHong Zhang 
1894d6ab1dc0SHong Zhang   /* determine the number of messages to send, their lengths */
18951795a4d1SJed Brown   ierr = PetscCalloc1(size,&len_si);CHKERRQ(ierr);
1896580bdb30SBarry Smith   ierr = PetscCalloc1(size,&merge->len_s);CHKERRQ(ierr);
18972205254eSKarl Rupp 
1898d6ab1dc0SHong Zhang   len_s        = merge->len_s;
1899d6ab1dc0SHong Zhang   merge->nsend = 0;
1900d6ab1dc0SHong Zhang 
1901854ce69bSBarry Smith   ierr = PetscMalloc1(size+2,&owners_co);CHKERRQ(ierr);
1902d6ab1dc0SHong Zhang 
1903d6ab1dc0SHong Zhang   proc = 0;
1904d6ab1dc0SHong Zhang   for (i=0; i<pon; i++) {
1905d6ab1dc0SHong Zhang     while (prmap[i] >= owners[proc+1]) proc++;
1906d6ab1dc0SHong Zhang     len_si[proc]++;  /* num of rows in Co to be sent to [proc] */
1907d6ab1dc0SHong Zhang     len_s[proc] += coi[i+1] - coi[i];
1908d6ab1dc0SHong Zhang   }
1909d6ab1dc0SHong Zhang 
1910d6ab1dc0SHong Zhang   len          = 0; /* max length of buf_si[] */
1911d6ab1dc0SHong Zhang   owners_co[0] = 0;
1912d6ab1dc0SHong Zhang   for (proc=0; proc<size; proc++) {
1913d6ab1dc0SHong Zhang     owners_co[proc+1] = owners_co[proc] + len_si[proc];
1914d6ab1dc0SHong Zhang     if (len_si[proc]) {
1915d6ab1dc0SHong Zhang       merge->nsend++;
1916d6ab1dc0SHong Zhang       len_si[proc] = 2*(len_si[proc] + 1);
1917d6ab1dc0SHong Zhang       len         += len_si[proc];
1918d6ab1dc0SHong Zhang     }
1919d6ab1dc0SHong Zhang   }
1920d6ab1dc0SHong Zhang 
1921d6ab1dc0SHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
19220298fd71SBarry Smith   ierr = PetscGatherNumberOfMessages(comm,NULL,len_s,&merge->nrecv);CHKERRQ(ierr);
1923d6ab1dc0SHong Zhang   ierr = PetscGatherMessageLengths2(comm,merge->nsend,merge->nrecv,len_s,len_si,&merge->id_r,&merge->len_r,&len_ri);CHKERRQ(ierr);
1924d6ab1dc0SHong Zhang 
1925d6ab1dc0SHong Zhang   /* post the Irecv and Isend of coj */
1926d6ab1dc0SHong Zhang   ierr = PetscCommGetNewTag(comm,&tagj);CHKERRQ(ierr);
1927d6ab1dc0SHong Zhang   ierr = PetscPostIrecvInt(comm,tagj,merge->nrecv,merge->id_r,merge->len_r,&buf_rj,&rwaits);CHKERRQ(ierr);
1928854ce69bSBarry Smith   ierr = PetscMalloc1(merge->nsend+1,&swaits);CHKERRQ(ierr);
1929d6ab1dc0SHong Zhang   for (proc=0, k=0; proc<size; proc++) {
1930d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1931d6ab1dc0SHong Zhang     i    = owners_co[proc];
1932ffc4695bSBarry Smith     ierr = MPI_Isend(coj+coi[i],len_s[proc],MPIU_INT,proc,tagj,comm,swaits+k);CHKERRMPI(ierr);
1933d6ab1dc0SHong Zhang     k++;
1934d6ab1dc0SHong Zhang   }
1935d6ab1dc0SHong Zhang 
1936d6ab1dc0SHong Zhang   /* receives and sends of coj are complete */
1937785e854fSJed Brown   ierr = PetscMalloc1(size,&sstatus);CHKERRQ(ierr);
1938d6ab1dc0SHong Zhang   for (i=0; i<merge->nrecv; i++) {
1939ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
1940ffc4695bSBarry Smith     ierr = MPI_Waitany(merge->nrecv,rwaits,&icompleted,&rstatus);CHKERRMPI(ierr);
1941d6ab1dc0SHong Zhang   }
1942d6ab1dc0SHong Zhang   ierr = PetscFree(rwaits);CHKERRQ(ierr);
1943ffc4695bSBarry Smith   if (merge->nsend) {ierr = MPI_Waitall(merge->nsend,swaits,sstatus);CHKERRMPI(ierr);}
1944d6ab1dc0SHong Zhang 
19450acc65b4SHong Zhang   /* add received column indices into table to update Armax */
1946c4762a1bSJed Brown   /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */
19470acc65b4SHong Zhang   for (k=0; k<merge->nrecv; k++) {/* k-th received message */
19480acc65b4SHong Zhang     Jptr = buf_rj[k];
19490acc65b4SHong Zhang     for (j=0; j<merge->len_r[k]; j++) {
19500acc65b4SHong Zhang       ierr = PetscTableAdd(ta,*(Jptr+j)+1,1,INSERT_VALUES);CHKERRQ(ierr);
19510acc65b4SHong Zhang     }
19520acc65b4SHong Zhang   }
19530acc65b4SHong Zhang   ierr = PetscTableGetCount(ta,&Armax);CHKERRQ(ierr);
195433ba5e2fSHong Zhang   /* printf("Armax %d, an %d + Bn %d = %d, aN %d\n",Armax,A->cmap->n,a->B->cmap->N,A->cmap->n+a->B->cmap->N,aN); */
19550acc65b4SHong Zhang 
1956d6ab1dc0SHong Zhang   /* send and recv coi */
1957d6ab1dc0SHong Zhang   /*-------------------*/
1958d6ab1dc0SHong Zhang   ierr   = PetscCommGetNewTag(comm,&tagi);CHKERRQ(ierr);
1959d6ab1dc0SHong Zhang   ierr   = PetscPostIrecvInt(comm,tagi,merge->nrecv,merge->id_r,len_ri,&buf_ri,&rwaits);CHKERRQ(ierr);
1960854ce69bSBarry Smith   ierr   = PetscMalloc1(len+1,&buf_s);CHKERRQ(ierr);
1961d6ab1dc0SHong Zhang   buf_si = buf_s;  /* points to the beginning of k-th msg to be sent */
1962d6ab1dc0SHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1963d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1964d6ab1dc0SHong Zhang     /* form outgoing message for i-structure:
1965d6ab1dc0SHong Zhang          buf_si[0]:                 nrows to be sent
1966d6ab1dc0SHong Zhang                [1:nrows]:           row index (global)
1967d6ab1dc0SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1968d6ab1dc0SHong Zhang     */
1969d6ab1dc0SHong Zhang     /*-------------------------------------------*/
1970d6ab1dc0SHong Zhang     nrows       = len_si[proc]/2 - 1;
1971d6ab1dc0SHong Zhang     buf_si_i    = buf_si + nrows+1;
1972d6ab1dc0SHong Zhang     buf_si[0]   = nrows;
1973d6ab1dc0SHong Zhang     buf_si_i[0] = 0;
1974d6ab1dc0SHong Zhang     nrows       = 0;
1975d6ab1dc0SHong Zhang     for (i=owners_co[proc]; i<owners_co[proc+1]; i++) {
1976d6ab1dc0SHong Zhang       nzi               = coi[i+1] - coi[i];
1977d6ab1dc0SHong Zhang       buf_si_i[nrows+1] = buf_si_i[nrows] + nzi;  /* i-structure */
1978d6ab1dc0SHong Zhang       buf_si[nrows+1]   = prmap[i] -owners[proc]; /* local row index */
1979d6ab1dc0SHong Zhang       nrows++;
1980d6ab1dc0SHong Zhang     }
1981ffc4695bSBarry Smith     ierr = MPI_Isend(buf_si,len_si[proc],MPIU_INT,proc,tagi,comm,swaits+k);CHKERRMPI(ierr);
1982d6ab1dc0SHong Zhang     k++;
1983d6ab1dc0SHong Zhang     buf_si += len_si[proc];
1984d6ab1dc0SHong Zhang   }
1985d6ab1dc0SHong Zhang   i = merge->nrecv;
1986d6ab1dc0SHong Zhang   while (i--) {
1987ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
1988ffc4695bSBarry Smith     ierr = MPI_Waitany(merge->nrecv,rwaits,&icompleted,&rstatus);CHKERRMPI(ierr);
1989d6ab1dc0SHong Zhang   }
1990d6ab1dc0SHong Zhang   ierr = PetscFree(rwaits);CHKERRQ(ierr);
1991ffc4695bSBarry Smith   if (merge->nsend) {ierr = MPI_Waitall(merge->nsend,swaits,sstatus);CHKERRMPI(ierr);}
1992d6ab1dc0SHong Zhang   ierr = PetscFree(len_si);CHKERRQ(ierr);
1993d6ab1dc0SHong Zhang   ierr = PetscFree(len_ri);CHKERRQ(ierr);
1994d6ab1dc0SHong Zhang   ierr = PetscFree(swaits);CHKERRQ(ierr);
1995d6ab1dc0SHong Zhang   ierr = PetscFree(sstatus);CHKERRQ(ierr);
1996d6ab1dc0SHong Zhang   ierr = PetscFree(buf_s);CHKERRQ(ierr);
1997d6ab1dc0SHong Zhang 
1998d6ab1dc0SHong Zhang   /* compute the local portion of C (mpi mat) */
1999d6ab1dc0SHong Zhang   /*------------------------------------------*/
2000d6ab1dc0SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
2001854ce69bSBarry Smith   ierr  = PetscMalloc1(pn+1,&bi);CHKERRQ(ierr);
2002d6ab1dc0SHong Zhang   bi[0] = 0;
2003d6ab1dc0SHong Zhang 
2004d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(P) + nnz(AP)) */
2005f91af8c7SBarry Smith   nnz           = PetscRealIntMultTruncate(fill,PetscIntSumTruncate(pdti[pn],PetscIntSumTruncate(poti[pon],ai[am])));
2006a2ea699eSBarry Smith   ierr          = PetscFreeSpaceGet(nnz,&free_space);CHKERRQ(ierr);
2007d6ab1dc0SHong Zhang   current_space = free_space;
2008d6ab1dc0SHong Zhang 
2009dcca6d9dSJed Brown   ierr = PetscMalloc3(merge->nrecv,&buf_ri_k,merge->nrecv,&nextrow,merge->nrecv,&nextci);CHKERRQ(ierr);
2010d6ab1dc0SHong Zhang   for (k=0; k<merge->nrecv; k++) {
2011d6ab1dc0SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
2012d6ab1dc0SHong Zhang     nrows       = *buf_ri_k[k];
2013d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;  /* next row number of k-th recved i-structure */
20142d4ee042Sprj-     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure  */
2015d6ab1dc0SHong Zhang   }
2016d6ab1dc0SHong Zhang 
20170acc65b4SHong Zhang   ierr = PetscLLCondensedCreate_Scalable(Armax,&lnk);CHKERRQ(ierr);
2018d6ab1dc0SHong Zhang   ierr = MatPreallocateInitialize(comm,pn,A->cmap->n,dnz,onz);CHKERRQ(ierr);
2019d6ab1dc0SHong Zhang   rmax = 0;
2020d6ab1dc0SHong Zhang   for (i=0; i<pn; i++) {
2021d6ab1dc0SHong Zhang     /* add pdt[i,:]*AP into lnk */
2022d6ab1dc0SHong Zhang     pnz = pdti[i+1] - pdti[i];
2023d6ab1dc0SHong Zhang     ptJ = pdtj + pdti[i];
2024d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
2025d6ab1dc0SHong Zhang       row  = ptJ[j];  /* row of AP == col of Pt */
2026d6ab1dc0SHong Zhang       anz  = ai[row+1] - ai[row];
2027d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
2028d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
2029d6ab1dc0SHong Zhang       ierr = PetscLLCondensedAddSorted_Scalable(anz,Jptr,lnk);CHKERRQ(ierr);
2030d6ab1dc0SHong Zhang     }
2031d6ab1dc0SHong Zhang 
2032d6ab1dc0SHong Zhang     /* add received col data into lnk */
2033d6ab1dc0SHong Zhang     for (k=0; k<merge->nrecv; k++) { /* k-th received message */
2034d6ab1dc0SHong Zhang       if (i == *nextrow[k]) { /* i-th row */
2035d6ab1dc0SHong Zhang         nzi  = *(nextci[k]+1) - *nextci[k];
2036d6ab1dc0SHong Zhang         Jptr = buf_rj[k] + *nextci[k];
2037d6ab1dc0SHong Zhang         ierr = PetscLLCondensedAddSorted_Scalable(nzi,Jptr,lnk);CHKERRQ(ierr);
2038d6ab1dc0SHong Zhang         nextrow[k]++; nextci[k]++;
2039d6ab1dc0SHong Zhang       }
2040d6ab1dc0SHong Zhang     }
20418c78258cSHong Zhang 
20428c78258cSHong Zhang     /* add missing diagonal entry */
20438c78258cSHong Zhang     if (C->force_diagonals) {
20448c78258cSHong Zhang       k = i + owners[rank]; /* column index */
20458c78258cSHong Zhang       ierr = PetscLLCondensedAddSorted_Scalable(1,&k,lnk);CHKERRQ(ierr);
20468c78258cSHong Zhang     }
20478c78258cSHong Zhang 
2048d6ab1dc0SHong Zhang     nnz = lnk[0];
2049d6ab1dc0SHong Zhang 
2050d6ab1dc0SHong Zhang     /* if free space is not available, make more free space */
2051d6ab1dc0SHong Zhang     if (current_space->local_remaining<nnz) {
2052f91af8c7SBarry Smith       ierr = PetscFreeSpaceGet(PetscIntSumTruncate(nnz,current_space->total_array_size),&current_space);CHKERRQ(ierr);
2053d6ab1dc0SHong Zhang       nspacedouble++;
2054d6ab1dc0SHong Zhang     }
2055d6ab1dc0SHong Zhang     /* copy data into free space, then initialize lnk */
2056d6ab1dc0SHong Zhang     ierr = PetscLLCondensedClean_Scalable(nnz,current_space->array,lnk);CHKERRQ(ierr);
2057d6ab1dc0SHong Zhang     ierr = MatPreallocateSet(i+owners[rank],nnz,current_space->array,dnz,onz);CHKERRQ(ierr);
20582205254eSKarl Rupp 
2059d6ab1dc0SHong Zhang     current_space->array           += nnz;
2060d6ab1dc0SHong Zhang     current_space->local_used      += nnz;
2061d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
20622205254eSKarl Rupp 
2063d6ab1dc0SHong Zhang     bi[i+1] = bi[i] + nnz;
2064d6ab1dc0SHong Zhang     if (nnz > rmax) rmax = nnz;
2065d6ab1dc0SHong Zhang   }
2066f671be37SHong Zhang   ierr = PetscFree3(buf_ri_k,nextrow,nextci);CHKERRQ(ierr);
2067d6ab1dc0SHong Zhang 
2068854ce69bSBarry Smith   ierr      = PetscMalloc1(bi[pn]+1,&bj);CHKERRQ(ierr);
2069d6ab1dc0SHong Zhang   ierr      = PetscFreeSpaceContiguous(&free_space,bj);CHKERRQ(ierr);
2070118727c9SMark F. Adams   afill_tmp = (PetscReal)bi[pn]/(pdti[pn] + poti[pon] + ai[am]+1);
2071d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
2072d6ab1dc0SHong Zhang   ierr = PetscLLCondensedDestroy_Scalable(lnk);CHKERRQ(ierr);
20730acc65b4SHong Zhang   ierr = PetscTableDestroy(&ta);CHKERRQ(ierr);
2074b419842dSStefano Zampini   ierr = MatRestoreSymbolicTranspose_SeqAIJ(p->A,&pdti,&pdtj);CHKERRQ(ierr);
2075b419842dSStefano Zampini   ierr = MatRestoreSymbolicTranspose_SeqAIJ(p->B,&poti,&potj);CHKERRQ(ierr);
2076d6ab1dc0SHong Zhang 
20774222ddf1SHong Zhang   /* create symbolic parallel matrix C - why cannot be assembled in Numeric part   */
20784222ddf1SHong Zhang   /*-------------------------------------------------------------------------------*/
20794222ddf1SHong Zhang   ierr = MatSetSizes(C,pn,A->cmap->n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
20804222ddf1SHong Zhang   ierr = MatSetBlockSizes(C,PetscAbs(P->cmap->bs),PetscAbs(A->cmap->bs));CHKERRQ(ierr);
2081b92f168fSBarry Smith   ierr = MatGetType(A,&mtype);CHKERRQ(ierr);
20824222ddf1SHong Zhang   ierr = MatSetType(C,mtype);CHKERRQ(ierr);
20834222ddf1SHong Zhang   ierr = MatMPIAIJSetPreallocation(C,0,dnz,0,onz);CHKERRQ(ierr);
2084d6ab1dc0SHong Zhang   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
20854222ddf1SHong Zhang   ierr = MatSetBlockSize(C,1);CHKERRQ(ierr);
208669be949aSStefano Zampini   ierr = MatSetOption(C,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE);CHKERRQ(ierr);
2087d6ab1dc0SHong Zhang   for (i=0; i<pn; i++) {
2088d6ab1dc0SHong Zhang     row  = i + rstart;
2089d6ab1dc0SHong Zhang     nnz  = bi[i+1] - bi[i];
2090d6ab1dc0SHong Zhang     Jptr = bj + bi[i];
20914222ddf1SHong Zhang     ierr = MatSetValues(C,1,&row,nnz,Jptr,NULL,INSERT_VALUES);CHKERRQ(ierr);
2092d6ab1dc0SHong Zhang   }
20934222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20944222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20950926fe31SStefano Zampini   ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2096d6ab1dc0SHong Zhang   merge->bi        = bi;
2097d6ab1dc0SHong Zhang   merge->bj        = bj;
2098d6ab1dc0SHong Zhang   merge->coi       = coi;
2099d6ab1dc0SHong Zhang   merge->coj       = coj;
2100d6ab1dc0SHong Zhang   merge->buf_ri    = buf_ri;
2101d6ab1dc0SHong Zhang   merge->buf_rj    = buf_rj;
2102d6ab1dc0SHong Zhang   merge->owners_co = owners_co;
2103d6ab1dc0SHong Zhang 
21044222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
21056718818eSStefano Zampini   C->product->data    = ptap;
21066718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
2107d6ab1dc0SHong Zhang   ptap->merge         = merge;
2108a560ef98SHong Zhang 
21094222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ;
2110f96d37fcSHong Zhang 
2111f96d37fcSHong Zhang #if defined(PETSC_USE_INFO)
2112f96d37fcSHong Zhang   if (bi[pn] != 0) {
21134222ddf1SHong Zhang     ierr = PetscInfo3(C,"Reallocs %D; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill);CHKERRQ(ierr);
21144222ddf1SHong Zhang     ierr = PetscInfo1(C,"Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n",(double)afill);CHKERRQ(ierr);
2115f96d37fcSHong Zhang   } else {
21164222ddf1SHong Zhang     ierr = PetscInfo(C,"Empty matrix product\n");CHKERRQ(ierr);
2117f96d37fcSHong Zhang   }
2118f96d37fcSHong Zhang #endif
2119f96d37fcSHong Zhang   PetscFunctionReturn(0);
2120f96d37fcSHong Zhang }
21214222ddf1SHong Zhang 
21224222ddf1SHong Zhang /* ---------------------------------------------------------------- */
21234222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C)
21244222ddf1SHong Zhang {
21254222ddf1SHong Zhang   PetscErrorCode ierr;
21264222ddf1SHong Zhang   Mat_Product    *product = C->product;
21274222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
21284222ddf1SHong Zhang   PetscReal      fill=product->fill;
21294222ddf1SHong Zhang   PetscBool      flg;
21304222ddf1SHong Zhang 
21314222ddf1SHong Zhang   PetscFunctionBegin;
21324222ddf1SHong Zhang   /* scalable */
21334222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"scalable",&flg);CHKERRQ(ierr);
21344222ddf1SHong Zhang   if (flg) {
21354222ddf1SHong Zhang     ierr = MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C);CHKERRQ(ierr);
21364222ddf1SHong Zhang     goto next;
21374222ddf1SHong Zhang   }
21384222ddf1SHong Zhang 
21394222ddf1SHong Zhang   /* nonscalable */
21404222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"nonscalable",&flg);CHKERRQ(ierr);
21414222ddf1SHong Zhang   if (flg) {
21424222ddf1SHong Zhang     ierr = MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A,B,fill,C);CHKERRQ(ierr);
21434222ddf1SHong Zhang     goto next;
21444222ddf1SHong Zhang   }
21454222ddf1SHong Zhang 
21464222ddf1SHong Zhang   /* matmatmult */
21474222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"at*b",&flg);CHKERRQ(ierr);
21484222ddf1SHong Zhang   if (flg) {
21494222ddf1SHong Zhang     Mat       At;
21504222ddf1SHong Zhang     Mat_APMPI *ptap;
21514222ddf1SHong Zhang 
21526718818eSStefano Zampini     ierr = MatTranspose(A,MAT_INITIAL_MATRIX,&At);CHKERRQ(ierr);
21534222ddf1SHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ(At,B,fill,C);CHKERRQ(ierr);
21546718818eSStefano Zampini     ptap = (Mat_APMPI*)C->product->data;
21554222ddf1SHong Zhang     if (ptap) {
21564222ddf1SHong Zhang       ptap->Pt = At;
21576718818eSStefano Zampini       C->product->destroy = MatDestroy_MPIAIJ_PtAP;
21584222ddf1SHong Zhang     }
21594222ddf1SHong Zhang     C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult;
21604222ddf1SHong Zhang     goto next;
21614222ddf1SHong Zhang   }
21624222ddf1SHong Zhang 
21634e84afc0SStefano Zampini   /* backend general code */
21644e84afc0SStefano Zampini   ierr = PetscStrcmp(product->alg,"backend",&flg);CHKERRQ(ierr);
21654e84afc0SStefano Zampini   if (flg) {
21664e84afc0SStefano Zampini     ierr = MatProductSymbolic_MPIAIJBACKEND(C);CHKERRQ(ierr);
21674e84afc0SStefano Zampini     PetscFunctionReturn(0);
21684e84afc0SStefano Zampini   }
21694e84afc0SStefano Zampini 
21704222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatProduct type is not supported");
21714222ddf1SHong Zhang 
21724222ddf1SHong Zhang next:
21734222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AtB;
21744222ddf1SHong Zhang   PetscFunctionReturn(0);
21754222ddf1SHong Zhang }
21764222ddf1SHong Zhang 
21774222ddf1SHong Zhang /* ---------------------------------------------------------------- */
21784222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */
21794222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C)
21804222ddf1SHong Zhang {
21814222ddf1SHong Zhang   PetscErrorCode ierr;
21824222ddf1SHong Zhang   Mat_Product    *product = C->product;
21834222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
21844222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
21854e84afc0SStefano Zampini   const char     *algTypes[5] = {"scalable","nonscalable","seqmpi","backend","hypre"};
21864e84afc0SStefano Zampini   PetscInt       nalg = 5;
21874222ddf1SHong Zhang #else
21884e84afc0SStefano Zampini   const char     *algTypes[4] = {"scalable","nonscalable","seqmpi","backend",};
21894e84afc0SStefano Zampini   PetscInt       nalg = 4;
21904222ddf1SHong Zhang #endif
21914222ddf1SHong Zhang   PetscInt       alg = 1; /* set nonscalable algorithm as default */
21924222ddf1SHong Zhang   PetscBool      flg;
21934222ddf1SHong Zhang   MPI_Comm       comm;
21944222ddf1SHong Zhang 
21954222ddf1SHong Zhang   PetscFunctionBegin;
21964222ddf1SHong Zhang   /* Check matrix local sizes */
21974222ddf1SHong Zhang   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
21984222ddf1SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap->rstart,A->cmap->rend,B->rmap->rstart,B->rmap->rend);
21994222ddf1SHong Zhang 
22004222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
22014222ddf1SHong Zhang   ierr = PetscStrcmp(C->product->alg,"default",&flg);CHKERRQ(ierr);
22024222ddf1SHong Zhang   if (flg) {
22034222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
22044222ddf1SHong Zhang 
22054222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22064222ddf1SHong Zhang     if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
22074222ddf1SHong Zhang       MatInfo     Ainfo,Binfo;
22084222ddf1SHong Zhang       PetscInt    nz_local;
22094222ddf1SHong Zhang       PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
22104222ddf1SHong Zhang 
22114222ddf1SHong Zhang       ierr = MatGetInfo(A,MAT_LOCAL,&Ainfo);CHKERRQ(ierr);
22124222ddf1SHong Zhang       ierr = MatGetInfo(B,MAT_LOCAL,&Binfo);CHKERRQ(ierr);
22134222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22144222ddf1SHong Zhang 
22154222ddf1SHong Zhang       if (B->cmap->N > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
22164222ddf1SHong Zhang       ierr = MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm);CHKERRQ(ierr);
22174222ddf1SHong Zhang 
22184222ddf1SHong Zhang       if (alg_scalable) {
22194222ddf1SHong Zhang         alg  = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
22204222ddf1SHong Zhang         ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
22214222ddf1SHong Zhang         ierr = PetscInfo2(B,"Use scalable algorithm, BN %D, fill*nz_allocated %g\n",B->cmap->N,product->fill*nz_local);CHKERRQ(ierr);
22224222ddf1SHong Zhang       }
22234222ddf1SHong Zhang     }
22244222ddf1SHong Zhang   }
22254222ddf1SHong Zhang 
22264222ddf1SHong Zhang   /* Get runtime option */
22274222ddf1SHong Zhang   if (product->api_user) {
22284222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatMult","Mat");CHKERRQ(ierr);
22294222ddf1SHong Zhang     ierr = PetscOptionsEList("-matmatmult_via","Algorithmic approach","MatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
22304222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
22314222ddf1SHong Zhang   } else {
22324222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_AB","Mat");CHKERRQ(ierr);
22334222ddf1SHong Zhang     ierr = PetscOptionsEList("-matproduct_ab_via","Algorithmic approach","MatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
22344222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
22354222ddf1SHong Zhang   }
22364222ddf1SHong Zhang   if (flg) {
22374222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
22384222ddf1SHong Zhang   }
22394222ddf1SHong Zhang 
22404222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ;
22414222ddf1SHong Zhang   PetscFunctionReturn(0);
22424222ddf1SHong Zhang }
22434222ddf1SHong Zhang 
22444222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */
22454222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C)
22464222ddf1SHong Zhang {
22474222ddf1SHong Zhang   PetscErrorCode ierr;
22484222ddf1SHong Zhang   Mat_Product    *product = C->product;
22494222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
22504e84afc0SStefano Zampini   const char     *algTypes[4] = {"scalable","nonscalable","at*b","backend"};
22514e84afc0SStefano Zampini   PetscInt       nalg = 4;
22524222ddf1SHong Zhang   PetscInt       alg = 1; /* set default algorithm  */
22534222ddf1SHong Zhang   PetscBool      flg;
22544222ddf1SHong Zhang   MPI_Comm       comm;
22554222ddf1SHong Zhang 
22564222ddf1SHong Zhang   PetscFunctionBegin;
22574222ddf1SHong Zhang   /* Check matrix local sizes */
22584222ddf1SHong Zhang   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
22594222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
22604222ddf1SHong Zhang 
22614222ddf1SHong Zhang   /* Set default algorithm */
22624222ddf1SHong Zhang   ierr = PetscStrcmp(C->product->alg,"default",&flg);CHKERRQ(ierr);
22634222ddf1SHong Zhang   if (flg) {
22644222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
22654222ddf1SHong Zhang   }
22664222ddf1SHong Zhang 
22674222ddf1SHong Zhang   /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22684222ddf1SHong Zhang   if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
22694222ddf1SHong Zhang     MatInfo     Ainfo,Binfo;
22704222ddf1SHong Zhang     PetscInt    nz_local;
22714222ddf1SHong Zhang     PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
22724222ddf1SHong Zhang 
22734222ddf1SHong Zhang     ierr = MatGetInfo(A,MAT_LOCAL,&Ainfo);CHKERRQ(ierr);
22744222ddf1SHong Zhang     ierr = MatGetInfo(B,MAT_LOCAL,&Binfo);CHKERRQ(ierr);
22754222ddf1SHong Zhang     nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22764222ddf1SHong Zhang 
22774222ddf1SHong Zhang     if (B->cmap->N > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
22784222ddf1SHong Zhang     ierr = MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm);CHKERRQ(ierr);
22794222ddf1SHong Zhang 
22804222ddf1SHong Zhang     if (alg_scalable) {
22814222ddf1SHong Zhang       alg  = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
22824222ddf1SHong Zhang       ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
22834222ddf1SHong Zhang       ierr = PetscInfo2(B,"Use scalable algorithm, BN %D, fill*nz_allocated %g\n",B->cmap->N,product->fill*nz_local);CHKERRQ(ierr);
22844222ddf1SHong Zhang     }
22854222ddf1SHong Zhang   }
22864222ddf1SHong Zhang 
22874222ddf1SHong Zhang   /* Get runtime option */
22884222ddf1SHong Zhang   if (product->api_user) {
22894222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatTransposeMatMult","Mat");CHKERRQ(ierr);
22904222ddf1SHong Zhang     ierr = PetscOptionsEList("-mattransposematmult_via","Algorithmic approach","MatTransposeMatMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
22914222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
22924222ddf1SHong Zhang   } else {
22934222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_AtB","Mat");CHKERRQ(ierr);
22944222ddf1SHong Zhang     ierr = PetscOptionsEList("-matproduct_atb_via","Algorithmic approach","MatTransposeMatMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
22954222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
22964222ddf1SHong Zhang   }
22974222ddf1SHong Zhang   if (flg) {
22984222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
22994222ddf1SHong Zhang   }
23004222ddf1SHong Zhang 
23014222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ;
23024222ddf1SHong Zhang   PetscFunctionReturn(0);
23034222ddf1SHong Zhang }
23044222ddf1SHong Zhang 
23054222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C)
23064222ddf1SHong Zhang {
23074222ddf1SHong Zhang   PetscErrorCode ierr;
23084222ddf1SHong Zhang   Mat_Product    *product = C->product;
23094222ddf1SHong Zhang   Mat            A=product->A,P=product->B;
23104222ddf1SHong Zhang   MPI_Comm       comm;
23114222ddf1SHong Zhang   PetscBool      flg;
23124222ddf1SHong Zhang   PetscInt       alg=1; /* set default algorithm */
23134222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
23144e84afc0SStefano Zampini   const char     *algTypes[5] = {"scalable","nonscalable","allatonce","allatonce_merged","backend"};
23154222ddf1SHong Zhang   PetscInt       nalg=5;
23164e84afc0SStefano Zampini #else
23174e84afc0SStefano Zampini   const char     *algTypes[6] = {"scalable","nonscalable","allatonce","allatonce_merged","backend","hypre"};
23184e84afc0SStefano Zampini   PetscInt       nalg=6;
23194222ddf1SHong Zhang #endif
23204222ddf1SHong Zhang   PetscInt       pN=P->cmap->N;
23214222ddf1SHong Zhang 
23224222ddf1SHong Zhang   PetscFunctionBegin;
23234222ddf1SHong Zhang   /* Check matrix local sizes */
23244222ddf1SHong Zhang   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
23254222ddf1SHong Zhang   if (A->rmap->rstart != P->rmap->rstart || A->rmap->rend != P->rmap->rend) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, Arow (%D, %D) != Prow (%D,%D)",A->rmap->rstart,A->rmap->rend,P->rmap->rstart,P->rmap->rend);
23264222ddf1SHong Zhang   if (A->cmap->rstart != P->rmap->rstart || A->cmap->rend != P->rmap->rend) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, Acol (%D, %D) != Prow (%D,%D)",A->cmap->rstart,A->cmap->rend,P->rmap->rstart,P->rmap->rend);
23274222ddf1SHong Zhang 
23284222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
23294222ddf1SHong Zhang   ierr = PetscStrcmp(C->product->alg,"default",&flg);CHKERRQ(ierr);
23304222ddf1SHong Zhang   if (flg) {
23314222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
23324222ddf1SHong Zhang 
23334222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
23344222ddf1SHong Zhang     if (pN > 100000) {
23354222ddf1SHong Zhang       MatInfo     Ainfo,Pinfo;
23364222ddf1SHong Zhang       PetscInt    nz_local;
23374222ddf1SHong Zhang       PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
23384222ddf1SHong Zhang 
23394222ddf1SHong Zhang       ierr = MatGetInfo(A,MAT_LOCAL,&Ainfo);CHKERRQ(ierr);
23404222ddf1SHong Zhang       ierr = MatGetInfo(P,MAT_LOCAL,&Pinfo);CHKERRQ(ierr);
23414222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated);
23424222ddf1SHong Zhang 
23434222ddf1SHong Zhang       if (pN > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
23444222ddf1SHong Zhang       ierr = MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm);CHKERRQ(ierr);
23454222ddf1SHong Zhang 
23464222ddf1SHong Zhang       if (alg_scalable) {
23474222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
23484222ddf1SHong Zhang         ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
23494222ddf1SHong Zhang       }
23504222ddf1SHong Zhang     }
23514222ddf1SHong Zhang   }
23524222ddf1SHong Zhang 
23534222ddf1SHong Zhang   /* Get runtime option */
23544222ddf1SHong Zhang   if (product->api_user) {
23554222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatPtAP","Mat");CHKERRQ(ierr);
23564222ddf1SHong Zhang     ierr = PetscOptionsEList("-matptap_via","Algorithmic approach","MatPtAP",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
23574222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
23584222ddf1SHong Zhang   } else {
23594222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_PtAP","Mat");CHKERRQ(ierr);
23604222ddf1SHong Zhang     ierr = PetscOptionsEList("-matproduct_ptap_via","Algorithmic approach","MatPtAP",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
23614222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
23624222ddf1SHong Zhang   }
23634222ddf1SHong Zhang   if (flg) {
23644222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
23654222ddf1SHong Zhang   }
23664222ddf1SHong Zhang 
23674222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ;
23684222ddf1SHong Zhang   PetscFunctionReturn(0);
23694222ddf1SHong Zhang }
23704222ddf1SHong Zhang 
23714222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C)
23724222ddf1SHong Zhang {
23734222ddf1SHong Zhang   Mat_Product *product = C->product;
23744222ddf1SHong Zhang   Mat         A = product->A,R=product->B;
23754222ddf1SHong Zhang 
23764222ddf1SHong Zhang   PetscFunctionBegin;
23774222ddf1SHong Zhang   /* Check matrix local sizes */
23784222ddf1SHong Zhang   if (A->cmap->n != R->cmap->n || A->rmap->n != R->cmap->n) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A local (%D, %D), R local (%D,%D)",A->rmap->n,A->rmap->n,R->rmap->n,R->cmap->n);
23794222ddf1SHong Zhang 
23804222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ;
23814222ddf1SHong Zhang   PetscFunctionReturn(0);
23824222ddf1SHong Zhang }
23834222ddf1SHong Zhang 
23844222ddf1SHong Zhang /*
23854222ddf1SHong Zhang  Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm
23864222ddf1SHong Zhang */
23874222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C)
23884222ddf1SHong Zhang {
23894222ddf1SHong Zhang   PetscErrorCode ierr;
23904222ddf1SHong Zhang   Mat_Product    *product = C->product;
23914222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
23924222ddf1SHong Zhang   PetscInt       alg = 1; /* default algorithm */
23934222ddf1SHong Zhang   const char     *algTypes[3] = {"scalable","nonscalable","seqmpi"};
23944222ddf1SHong Zhang   PetscInt       nalg = 3;
23954222ddf1SHong Zhang 
23964222ddf1SHong Zhang   PetscFunctionBegin;
23974222ddf1SHong Zhang   /* Set default algorithm */
23984222ddf1SHong Zhang   ierr = PetscStrcmp(C->product->alg,"default",&flg);CHKERRQ(ierr);
23994222ddf1SHong Zhang   if (flg) {
24004222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
24014222ddf1SHong Zhang   }
24024222ddf1SHong Zhang 
24034222ddf1SHong Zhang   /* Get runtime option */
24044222ddf1SHong Zhang   if (product->api_user) {
24054222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatMatMult","Mat");CHKERRQ(ierr);
24064222ddf1SHong Zhang     ierr = PetscOptionsEList("-matmatmatmult_via","Algorithmic approach","MatMatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
24074222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
24084222ddf1SHong Zhang   } else {
24094222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABC","Mat");CHKERRQ(ierr);
24104222ddf1SHong Zhang     ierr = PetscOptionsEList("-matproduct_abc_via","Algorithmic approach","MatProduct_ABC",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
24114222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
24124222ddf1SHong Zhang   }
24134222ddf1SHong Zhang   if (flg) {
24144222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
24154222ddf1SHong Zhang   }
24164222ddf1SHong Zhang 
24174222ddf1SHong Zhang   C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ;
24184222ddf1SHong Zhang   C->ops->productsymbolic    = MatProductSymbolic_ABC;
24194222ddf1SHong Zhang   PetscFunctionReturn(0);
24204222ddf1SHong Zhang }
24214222ddf1SHong Zhang 
24224222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C)
24234222ddf1SHong Zhang {
24244222ddf1SHong Zhang   PetscErrorCode ierr;
24254222ddf1SHong Zhang   Mat_Product    *product = C->product;
24264222ddf1SHong Zhang 
24274222ddf1SHong Zhang   PetscFunctionBegin;
24284222ddf1SHong Zhang   switch (product->type) {
24294222ddf1SHong Zhang   case MATPRODUCT_AB:
24304222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIAIJ_AB(C);CHKERRQ(ierr);
24314222ddf1SHong Zhang     break;
24324222ddf1SHong Zhang   case MATPRODUCT_AtB:
24334222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIAIJ_AtB(C);CHKERRQ(ierr);
24344222ddf1SHong Zhang     break;
24354222ddf1SHong Zhang   case MATPRODUCT_PtAP:
24364222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIAIJ_PtAP(C);CHKERRQ(ierr);
24374222ddf1SHong Zhang     break;
24384222ddf1SHong Zhang   case MATPRODUCT_RARt:
24394222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIAIJ_RARt(C);CHKERRQ(ierr);
24404222ddf1SHong Zhang     break;
24414222ddf1SHong Zhang   case MATPRODUCT_ABC:
24424222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIAIJ_ABC(C);CHKERRQ(ierr);
24434222ddf1SHong Zhang     break;
24446718818eSStefano Zampini   default:
24456718818eSStefano Zampini     break;
24464222ddf1SHong Zhang   }
24474222ddf1SHong Zhang   PetscFunctionReturn(0);
24484222ddf1SHong Zhang }
2449