xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision 799b351e7a3cac07b0185fc03c8dca1b36495923)
12499ec78SHong Zhang /*
22499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
32499ec78SHong Zhang           C = A * B
42499ec78SHong Zhang */
5c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
6c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
7c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
8c6db04a5SJed Brown #include <petscbt.h>
9c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
10af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
1197929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
121634b032SHong Zhang 
135e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
144222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat);
155e5acdf2Sstefano_zampini #endif
165e5acdf2Sstefano_zampini 
17d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C)
18d71ae5a4SJacob Faibussowitsch {
198a9c020eSBarry Smith   Mat_Product *product = C->product;
208a9c020eSBarry Smith   Mat          B       = product->B;
218a9c020eSBarry Smith 
228a9c020eSBarry Smith   PetscFunctionBegin;
238a9c020eSBarry Smith   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &product->B));
248a9c020eSBarry Smith   PetscCall(MatDestroy(&B));
258a9c020eSBarry Smith   PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C));
263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
278a9c020eSBarry Smith }
288a9c020eSBarry Smith 
29d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C)
30d71ae5a4SJacob Faibussowitsch {
314222ddf1SHong Zhang   Mat_Product        *product = C->product;
324222ddf1SHong Zhang   Mat                 A = product->A, B = product->B;
334222ddf1SHong Zhang   MatProductAlgorithm alg  = product->alg;
344222ddf1SHong Zhang   PetscReal           fill = product->fill;
355e68f438SHong Zhang   PetscBool           flg;
362499ec78SHong Zhang 
372499ec78SHong Zhang   PetscFunctionBegin;
384222ddf1SHong Zhang   /* scalable */
399566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "scalable", &flg));
404222ddf1SHong Zhang   if (flg) {
419566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
430fc8cf34SHong Zhang   }
447d0a89b7SHong Zhang 
454222ddf1SHong Zhang   /* nonscalable */
469566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "nonscalable", &flg));
474222ddf1SHong Zhang   if (flg) {
489566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
493ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
504222ddf1SHong Zhang   }
514222ddf1SHong Zhang 
524222ddf1SHong Zhang   /* seqmpi */
539566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "seqmpi", &flg));
544222ddf1SHong Zhang   if (flg) {
559566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A, B, fill, C));
563ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
574222ddf1SHong Zhang   }
584222ddf1SHong Zhang 
594e84afc0SStefano Zampini   /* backend general code */
609566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "backend", &flg));
614e84afc0SStefano Zampini   if (flg) {
629566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
633ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
644e84afc0SStefano Zampini   }
654e84afc0SStefano Zampini 
664222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
679566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "hypre", &flg));
684222ddf1SHong Zhang   if (flg) {
699566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C));
703ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
714222ddf1SHong Zhang   }
724222ddf1SHong Zhang #endif
734222ddf1SHong Zhang   SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Mat Product Algorithm is not supported");
742499ec78SHong Zhang }
752499ec78SHong Zhang 
76cc1eb50dSBarry Smith PetscErrorCode MatProductCtxDestroy_MPIAIJ_MatMatMult(void **data)
77d71ae5a4SJacob Faibussowitsch {
78cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap = *(MatProductCtx_APMPI **)data;
79598bc09dSHong Zhang 
80598bc09dSHong Zhang   PetscFunctionBegin;
819566063dSJacob Faibussowitsch   PetscCall(PetscFree2(ptap->startsj_s, ptap->startsj_r));
829566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->bufa));
839566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_loc));
849566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_oth));
859566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->Pt));
869566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->api));
879566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apj));
889566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apa));
899566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap));
903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91598bc09dSHong Zhang }
92598bc09dSHong Zhang 
93d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, Mat C)
94d71ae5a4SJacob Faibussowitsch {
954ae0847bSHong Zhang   Mat_MPIAIJ          *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
96f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data;
97f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data;
98c12557a1SHong Zhang   PetscScalar         *cda = cd->a, *coa = co->a;
99598bc09dSHong Zhang   Mat_SeqAIJ          *p_loc, *p_oth;
1009ce11a7cSHong Zhang   PetscScalar         *apa, *ca;
101c12557a1SHong Zhang   PetscInt             cm = C->rmap->n;
102cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
103c12557a1SHong Zhang   PetscInt            *api, *apj, *apJ, i, k;
10429825010SHong Zhang   PetscInt             cstart = C->cmap->rstart;
105598bc09dSHong Zhang   PetscInt             cdnz, conz, k0, k1;
106ce496241SStefano Zampini   const PetscScalar   *dummy;
1079467f45fSHong Zhang   MPI_Comm             comm;
1089467f45fSHong Zhang   PetscMPIInt          size;
109598bc09dSHong Zhang 
110598bc09dSHong Zhang   PetscFunctionBegin;
1116718818eSStefano Zampini   MatCheckProduct(C, 3);
112cc1eb50dSBarry Smith   ptap = (MatProductCtx_APMPI *)C->product->data;
11328b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
1149566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1159566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
116aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
11780da8df7SHong Zhang 
11865e4b4d4SStefano Zampini   /* flag CPU mask for C */
11965e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
12065e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
12165e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
12265e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
12365e4b4d4SStefano Zampini #endif
12465e4b4d4SStefano Zampini 
125a1a4e84aSHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
126a1a4e84aSHong Zhang   /* update numerical values of P_oth and P_loc */
1279566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1289566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
129598bc09dSHong Zhang 
130598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
131598bc09dSHong Zhang   /* get data from symbolic products */
132f4f49eeaSPierre Jolivet   p_loc = (Mat_SeqAIJ *)ptap->P_loc->data;
133c12557a1SHong Zhang   p_oth = NULL;
134f4f49eeaSPierre Jolivet   if (size > 1) p_oth = (Mat_SeqAIJ *)ptap->P_oth->data;
135598bc09dSHong Zhang 
136598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
137598bc09dSHong Zhang   apa = ptap->apa;
138598bc09dSHong Zhang 
13929825010SHong Zhang   api = ptap->api;
14029825010SHong Zhang   apj = ptap->apj;
141ce496241SStefano Zampini   /* trigger copy to CPU */
1429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy));
1439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy));
1449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy));
1459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy));
146598bc09dSHong Zhang   for (i = 0; i < cm; i++) {
147c12557a1SHong Zhang     /* compute apa = A[i,:]*P */
148e497d3c8SHong Zhang     AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa);
149598bc09dSHong Zhang 
150598bc09dSHong Zhang     /* set values in C */
151216f1e5cSPierre Jolivet     apJ  = PetscSafePointerPlusOffset(apj, api[i]);
152598bc09dSHong Zhang     cdnz = cd->i[i + 1] - cd->i[i];
153598bc09dSHong Zhang     conz = co->i[i + 1] - co->i[i];
154598bc09dSHong Zhang 
155910cf402Sprj-     /* 1st off-diagonal part of C */
1568e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
157598bc09dSHong Zhang     k  = 0;
158598bc09dSHong Zhang     for (k0 = 0; k0 < conz; k0++) {
159598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
160598bc09dSHong Zhang       ca[k0]        = apa[apJ[k]];
1615cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
162598bc09dSHong Zhang     }
163598bc09dSHong Zhang 
164598bc09dSHong Zhang     /* diagonal part of C */
1658e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(cda, cd->i[i]);
166598bc09dSHong Zhang     for (k1 = 0; k1 < cdnz; k1++) {
167598bc09dSHong Zhang       ca[k1]        = apa[apJ[k]];
1685cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
169598bc09dSHong Zhang     }
170598bc09dSHong Zhang 
171910cf402Sprj-     /* 2nd off-diagonal part of C */
1728e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
173598bc09dSHong Zhang     for (; k0 < conz; k0++) {
174598bc09dSHong Zhang       ca[k0]        = apa[apJ[k]];
1755cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
176598bc09dSHong Zhang     }
177598bc09dSHong Zhang   }
1789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
1799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
1803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
181598bc09dSHong Zhang }
182598bc09dSHong Zhang 
183d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, PetscReal fill, Mat C)
184d71ae5a4SJacob Faibussowitsch {
185ce94432eSBarry Smith   MPI_Comm             comm;
1869467f45fSHong Zhang   PetscMPIInt          size;
187cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
1880298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
1896718818eSStefano Zampini   Mat_MPIAIJ          *a  = (Mat_MPIAIJ *)A->data;
190f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth;
1917dbaa2c6Sandi selinger   PetscInt            *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
1924ae0847bSHong Zhang   PetscInt            *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
193d14fa243SHong Zhang   PetscInt            *lnk, i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi;
1945cab4f04SHong Zhang   PetscInt             am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n;
195598bc09dSHong Zhang   PetscBT              lnkbt;
196bfcd1a73SHong Zhang   PetscReal            afill;
197b92f168fSBarry Smith   MatType              mtype;
198598bc09dSHong Zhang 
199598bc09dSHong Zhang   PetscFunctionBegin;
2006718818eSStefano Zampini   MatCheckProduct(C, 4);
20128b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
2029566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
2039566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2049467f45fSHong Zhang 
205cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
2069566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
207598bc09dSHong Zhang 
208598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
2099566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
21019f0e57aSHong Zhang 
211598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
2129566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
213598bc09dSHong Zhang 
214f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
2159371c9d4SSatish Balay   pi_loc = p_loc->i;
2169371c9d4SSatish Balay   pj_loc = p_loc->j;
2179467f45fSHong Zhang   if (size > 1) {
218f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
2199371c9d4SSatish Balay     pi_oth = p_oth->i;
2209371c9d4SSatish Balay     pj_oth = p_oth->j;
22120e3dc75SHong Zhang   } else {
22220e3dc75SHong Zhang     p_oth  = NULL;
2239371c9d4SSatish Balay     pi_oth = NULL;
2249371c9d4SSatish Balay     pj_oth = NULL;
2259467f45fSHong Zhang   }
226598bc09dSHong Zhang 
227598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
22884648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &api));
229a1a4e84aSHong Zhang   ptap->api = api;
230598bc09dSHong Zhang   api[0]    = 0;
231598bc09dSHong Zhang 
2325cab4f04SHong Zhang   /* create and initialize a linked list */
2339566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
234598bc09dSHong Zhang 
235bfcd1a73SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
2369566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
237598bc09dSHong Zhang   current_space = free_space;
238598bc09dSHong Zhang 
239d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
240598bc09dSHong Zhang   for (i = 0; i < am; i++) {
241598bc09dSHong Zhang     /* diagonal portion of A */
242598bc09dSHong Zhang     nzi = adi[i + 1] - adi[i];
243598bc09dSHong Zhang     for (j = 0; j < nzi; j++) {
244598bc09dSHong Zhang       row  = *adj++;
245598bc09dSHong Zhang       pnz  = pi_loc[row + 1] - pi_loc[row];
246598bc09dSHong Zhang       Jptr = pj_loc + pi_loc[row];
247598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
2489566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
249598bc09dSHong Zhang     }
250598bc09dSHong Zhang     /* off-diagonal portion of A */
251598bc09dSHong Zhang     nzi = aoi[i + 1] - aoi[i];
252598bc09dSHong Zhang     for (j = 0; j < nzi; j++) {
253598bc09dSHong Zhang       row  = *aoj++;
254598bc09dSHong Zhang       pnz  = pi_oth[row + 1] - pi_oth[row];
255598bc09dSHong Zhang       Jptr = pj_oth + pi_oth[row];
2569566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
257598bc09dSHong Zhang     }
2588c78258cSHong Zhang     /* add possible missing diagonal entry */
2598c78258cSHong Zhang     if (C->force_diagonals) {
2608c78258cSHong Zhang       j = i + rstart; /* column index */
2619566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1, &j, lnk, lnkbt));
2628c78258cSHong Zhang     }
263598bc09dSHong Zhang 
264d14fa243SHong Zhang     apnz       = lnk[0];
265598bc09dSHong Zhang     api[i + 1] = api[i] + apnz;
266598bc09dSHong Zhang 
267598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
268598bc09dSHong Zhang     if (current_space->local_remaining < apnz) {
2699566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), &current_space));
270598bc09dSHong Zhang       nspacedouble++;
271598bc09dSHong Zhang     }
272598bc09dSHong Zhang 
273598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
2749566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN, apnz, current_space->array, lnk, lnkbt));
2759566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
2762205254eSKarl Rupp 
277598bc09dSHong Zhang     current_space->array += apnz;
278598bc09dSHong Zhang     current_space->local_used += apnz;
279598bc09dSHong Zhang     current_space->local_remaining -= apnz;
280598bc09dSHong Zhang   }
281598bc09dSHong Zhang 
282598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
283598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
28484648c2dSPierre Jolivet   PetscCall(PetscMalloc1(api[am], &ptap->apj));
285a1a4e84aSHong Zhang   apj = ptap->apj;
2869566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
2879566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
288598bc09dSHong Zhang 
289f84c536bSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
2909566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN, &ptap->apa));
291f84c536bSHong Zhang 
2924222ddf1SHong Zhang   /* set and assemble symbolic parallel matrix C */
2939566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
2949566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
295a2f3521dSMark F. Adams 
2969566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
2979566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
2989566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
299d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
30017f75172Sandi selinger 
3019566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
302*799b351eSPierre Jolivet   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3059566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
306598bc09dSHong Zhang 
3074222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
3084222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
309598bc09dSHong Zhang 
3104222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
3116718818eSStefano Zampini   C->product->data    = ptap;
312cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult;
313598bc09dSHong Zhang 
314bfcd1a73SHong Zhang   /* set MatInfo */
315118727c9SMark F. Adams   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
316bfcd1a73SHong Zhang   if (afill < 1.0) afill = 1.0;
3174222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
3184222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
3194222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
320bfcd1a73SHong Zhang 
321bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
322bfcd1a73SHong Zhang   if (api[am]) {
3239566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
3249566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
325bfcd1a73SHong Zhang   } else {
3269566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
327bfcd1a73SHong Zhang   }
328bfcd1a73SHong Zhang #endif
3293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
330598bc09dSHong Zhang }
331598bc09dSHong Zhang 
3326718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat);
3336718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat, Mat, Mat);
3346718818eSStefano Zampini 
335d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C)
336d71ae5a4SJacob Faibussowitsch {
3374222ddf1SHong Zhang   Mat_Product *product = C->product;
3384222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
3399123193aSHong Zhang 
3409123193aSHong Zhang   PetscFunctionBegin;
3414222ddf1SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend)
34298921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
3434222ddf1SHong Zhang 
3444222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense;
3454222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
3463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3479123193aSHong Zhang }
3482ef1f0ffSBarry Smith 
349d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C)
350d71ae5a4SJacob Faibussowitsch {
3514222ddf1SHong Zhang   Mat_Product *product = C->product;
3524222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
3534222ddf1SHong Zhang 
3544222ddf1SHong Zhang   PetscFunctionBegin;
3554222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
35698921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
3574222ddf1SHong Zhang 
3584222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense;
3594222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
3603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3614222ddf1SHong Zhang }
3624222ddf1SHong Zhang 
363d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C)
364d71ae5a4SJacob Faibussowitsch {
3654222ddf1SHong Zhang   Mat_Product *product = C->product;
3664222ddf1SHong Zhang 
3674222ddf1SHong Zhang   PetscFunctionBegin;
3684222ddf1SHong Zhang   switch (product->type) {
369d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
370d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C));
371d71ae5a4SJacob Faibussowitsch     break;
372d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
373d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C));
374d71ae5a4SJacob Faibussowitsch     break;
375d71ae5a4SJacob Faibussowitsch   default:
376d71ae5a4SJacob Faibussowitsch     break;
3774222ddf1SHong Zhang   }
3783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3794222ddf1SHong Zhang }
3809123193aSHong Zhang 
3814324174eSBarry Smith typedef struct {
3825ea7661aSPierre Jolivet   Mat           workB, workB1;
3834324174eSBarry Smith   MPI_Request  *rwaits, *swaits;
38487753ddeSHong Zhang   PetscInt      nsends, nrecvs;
38587753ddeSHong Zhang   MPI_Datatype *stype, *rtype;
3866718818eSStefano Zampini   PetscInt      blda;
3874324174eSBarry Smith } MPIAIJ_MPIDense;
3884324174eSBarry Smith 
389cc1eb50dSBarry Smith static PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void **ctx)
390d71ae5a4SJacob Faibussowitsch {
391cc1eb50dSBarry Smith   MPIAIJ_MPIDense *contents = *(MPIAIJ_MPIDense **)ctx;
39287753ddeSHong Zhang   PetscInt         i;
3934324174eSBarry Smith 
3944324174eSBarry Smith   PetscFunctionBegin;
3959566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB));
3969566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB1));
39748a46eb9SPierre Jolivet   for (i = 0; i < contents->nsends; i++) PetscCallMPI(MPI_Type_free(&contents->stype[i]));
39848a46eb9SPierre Jolivet   for (i = 0; i < contents->nrecvs; i++) PetscCallMPI(MPI_Type_free(&contents->rtype[i]));
3999566063dSJacob Faibussowitsch   PetscCall(PetscFree4(contents->stype, contents->rtype, contents->rwaits, contents->swaits));
4009566063dSJacob Faibussowitsch   PetscCall(PetscFree(contents));
4013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4024324174eSBarry Smith }
4034324174eSBarry Smith 
404d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A, Mat B, PetscReal fill, Mat C)
405d71ae5a4SJacob Faibussowitsch {
406f32d5d43SBarry Smith   Mat_MPIAIJ      *aij = (Mat_MPIAIJ *)A->data;
4076497c311SBarry Smith   PetscInt         nz  = aij->B->cmap->n, blda, m, M, n, N;
4084324174eSBarry Smith   MPIAIJ_MPIDense *contents;
4094324174eSBarry Smith   VecScatter       ctx = aij->Mvctx;
4106497c311SBarry Smith   PetscInt         Am = A->rmap->n, Bm = B->rmap->n, BN = B->cmap->N, Bbn, Bbn1, bs, numBb;
41187753ddeSHong Zhang   MPI_Comm         comm;
41287753ddeSHong Zhang   MPI_Datatype     type1, *stype, *rtype;
41387753ddeSHong Zhang   const PetscInt  *sindices, *sstarts, *rstarts;
4146497c311SBarry Smith   PetscMPIInt     *disp, nsends, nrecvs, nrows_to, nrows_from;
4156718818eSStefano Zampini   PetscBool        cisdense;
4169123193aSHong Zhang 
4179123193aSHong Zhang   PetscFunctionBegin;
4186718818eSStefano Zampini   MatCheckProduct(C, 4);
41928b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
4209566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
4219566063dSJacob Faibussowitsch   PetscCall(PetscObjectBaseTypeCompare((PetscObject)C, MATMPIDENSE, &cisdense));
42248a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)B)->type_name));
4239566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(C, &m, &n));
4249566063dSJacob Faibussowitsch   PetscCall(MatGetSize(C, &M, &N));
42548a46eb9SPierre Jolivet   if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) PetscCall(MatSetSizes(C, Am, B->cmap->n, A->rmap->N, BN));
4269566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
4279566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
4289566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &blda));
4299566063dSJacob Faibussowitsch   PetscCall(PetscNew(&contents));
4304324174eSBarry Smith 
4319566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
4329566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
43387753ddeSHong Zhang 
43487753ddeSHong Zhang   /* Create column block of B and C for memory scalability when BN is too large */
43587753ddeSHong Zhang   /* Estimate Bbn, column size of Bb */
43687753ddeSHong Zhang   if (nz) {
43787753ddeSHong Zhang     Bbn1 = 2 * Am * BN / nz;
438da7cbbe7SHong Zhang     if (!Bbn1) Bbn1 = 1;
43987753ddeSHong Zhang   } else Bbn1 = BN;
44087753ddeSHong Zhang 
44158b7e2c1SStefano Zampini   bs   = B->cmap->bs;
44287753ddeSHong Zhang   Bbn1 = Bbn1 / bs * bs; /* Bbn1 is a multiple of bs */
44387753ddeSHong Zhang   if (Bbn1 > BN) Bbn1 = BN;
444462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&Bbn1, &Bbn, 1, MPIU_INT, MPI_MAX, comm));
44587753ddeSHong Zhang 
44687753ddeSHong Zhang   /* Enable runtime option for Bbn */
447d0609cedSBarry Smith   PetscOptionsBegin(comm, ((PetscObject)C)->prefix, "MatMatMult", "Mat");
4489566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-matmatmult_Bbn", "Number of columns in Bb", "MatMatMult", Bbn, &Bbn, NULL));
449d0609cedSBarry Smith   PetscOptionsEnd();
4506718818eSStefano Zampini   Bbn = PetscMin(Bbn, BN);
45187753ddeSHong Zhang 
4526718818eSStefano Zampini   if (Bbn > 0 && Bbn < BN) {
4535ea7661aSPierre Jolivet     numBb = BN / Bbn;
4545ea7661aSPierre Jolivet     Bbn1  = BN - numBb * Bbn;
4555ea7661aSPierre Jolivet   } else numBb = 0;
45687753ddeSHong Zhang 
4575ea7661aSPierre Jolivet   if (numBb) {
4589566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n", BN, Bbn, numBb));
4595ea7661aSPierre Jolivet     if (Bbn1) { /* Create workB1 for the remaining columns */
4609566063dSJacob Faibussowitsch       PetscCall(PetscInfo(C, "use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n", BN, Bbn1));
46187753ddeSHong Zhang       /* Create work matrix used to store off processor rows of B needed for local product */
4629566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn1, NULL, &contents->workB1));
4635ea7661aSPierre Jolivet     } else contents->workB1 = NULL;
46487753ddeSHong Zhang   }
46587753ddeSHong Zhang 
46687753ddeSHong Zhang   /* Create work matrix used to store off processor rows of B needed for local product */
4679566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn, NULL, &contents->workB));
46887753ddeSHong Zhang 
46987753ddeSHong Zhang   /* Use MPI derived data type to reduce memory required by the send/recv buffers */
4709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(nsends, &stype, nrecvs, &rtype, nrecvs, &contents->rwaits, nsends, &contents->swaits));
47187753ddeSHong Zhang   contents->stype  = stype;
47287753ddeSHong Zhang   contents->nsends = nsends;
47387753ddeSHong Zhang 
47487753ddeSHong Zhang   contents->rtype  = rtype;
47587753ddeSHong Zhang   contents->nrecvs = nrecvs;
4766718818eSStefano Zampini   contents->blda   = blda;
47787753ddeSHong Zhang 
4789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bm + 1, &disp));
4796497c311SBarry Smith   for (PetscMPIInt i = 0; i < nsends; i++) {
4806497c311SBarry Smith     PetscCall(PetscMPIIntCast(sstarts[i + 1] - sstarts[i], &nrows_to));
4816497c311SBarry Smith     for (PetscInt j = 0; j < nrows_to; j++) PetscCall(PetscMPIIntCast(sindices[sstarts[i] + j], &disp[j])); /* rowB to be sent */
4829566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(nrows_to, 1, disp, MPIU_SCALAR, &type1));
4839566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1, 0, blda * sizeof(PetscScalar), &stype[i]));
4849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&stype[i]));
4859566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
48687753ddeSHong Zhang   }
48787753ddeSHong Zhang 
4886497c311SBarry Smith   for (PetscMPIInt i = 0; i < nrecvs; i++) {
48987753ddeSHong Zhang     /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */
4906497c311SBarry Smith     PetscCall(PetscMPIIntCast(rstarts[i + 1] - rstarts[i], &nrows_from));
49187753ddeSHong Zhang     disp[0] = 0;
4929566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(1, nrows_from, disp, MPIU_SCALAR, &type1));
4939566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1, 0, nz * sizeof(PetscScalar), &rtype[i]));
4949566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&rtype[i]));
4959566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
49687753ddeSHong Zhang   }
49787753ddeSHong Zhang 
4989566063dSJacob Faibussowitsch   PetscCall(PetscFree(disp));
4999566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
5009566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
5019566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
5029566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
5039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
5046718818eSStefano Zampini 
5056718818eSStefano Zampini   C->product->data       = contents;
5066718818eSStefano Zampini   C->product->destroy    = MatMPIAIJ_MPIDenseDestroy;
5074222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense;
5083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5099123193aSHong Zhang }
5109123193aSHong Zhang 
51193aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat, Mat, Mat, const PetscBool);
5129612af27SStefano Zampini 
513f32d5d43SBarry Smith /*
5142636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
5152636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
51687753ddeSHong Zhang 
5179612af27SStefano Zampini     Input: If Bbidx = 0, uses B = Bb, else B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense()
518f32d5d43SBarry Smith */
5199612af27SStefano Zampini 
52066976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseScatter(Mat A, Mat B, PetscInt Bbidx, Mat C, Mat *outworkB)
521d71ae5a4SJacob Faibussowitsch {
522f32d5d43SBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
5231683a169SBarry Smith   const PetscScalar *b;
52487753ddeSHong Zhang   PetscScalar       *rvalues;
525f32d5d43SBarry Smith   VecScatter         ctx = aij->Mvctx;
52687753ddeSHong Zhang   const PetscInt    *sindices, *sstarts, *rstarts;
5273515ee7fSJunchao Zhang   const PetscMPIInt *sprocs, *rprocs;
5286497c311SBarry Smith   PetscMPIInt        nsends, nrecvs;
529f32d5d43SBarry Smith   MPI_Request       *swaits, *rwaits;
530ce94432eSBarry Smith   MPI_Comm           comm;
5316497c311SBarry Smith   PetscMPIInt        tag = ((PetscObject)ctx)->tag, ncols, nrows, nsends_mpi, nrecvs_mpi;
5324324174eSBarry Smith   MPIAIJ_MPIDense   *contents;
5334324174eSBarry Smith   Mat                workB;
53487753ddeSHong Zhang   MPI_Datatype      *stype, *rtype;
5356718818eSStefano Zampini   PetscInt           blda;
536f32d5d43SBarry Smith 
537f32d5d43SBarry Smith   PetscFunctionBegin;
5386718818eSStefano Zampini   MatCheckProduct(C, 4);
53928b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5406497c311SBarry Smith   PetscCall(PetscMPIIntCast(B->cmap->N, &ncols));
5416497c311SBarry Smith   PetscCall(PetscMPIIntCast(aij->B->cmap->n, &nrows));
5426718818eSStefano Zampini   contents = (MPIAIJ_MPIDense *)C->product->data;
5439566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL /*bs*/));
5449566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL /*bs*/));
5459566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends, &nsends_mpi));
5469566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nrecvs, &nrecvs_mpi));
547b45e3bf4SStefano Zampini   if (Bbidx == 0) workB = *outworkB = contents->workB;
548b45e3bf4SStefano Zampini   else workB = *outworkB = contents->workB1;
54908401ef6SPierre Jolivet   PetscCheck(nrows == workB->rmap->n, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d", workB->cmap->n, nrows);
5503515ee7fSJunchao Zhang   swaits = contents->swaits;
5513515ee7fSJunchao Zhang   rwaits = contents->rwaits;
552f32d5d43SBarry Smith 
5539566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B, &b));
5549566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &blda));
55508401ef6SPierre Jolivet   PetscCheck(blda == contents->blda, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT, blda, contents->blda);
5569566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(workB, &rvalues));
557f32d5d43SBarry Smith 
55887753ddeSHong Zhang   /* Post recv, use MPI derived data type to save memory */
5599566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
56087753ddeSHong Zhang   rtype = contents->rtype;
5616497c311SBarry Smith   for (PetscMPIInt i = 0; i < nrecvs; i++) PetscCallMPI(MPIU_Irecv(rvalues + (rstarts[i] - rstarts[0]), ncols, rtype[i], rprocs[i], tag, comm, rwaits + i));
562f32d5d43SBarry Smith 
56387753ddeSHong Zhang   stype = contents->stype;
5646497c311SBarry Smith   for (PetscMPIInt i = 0; i < nsends; i++) PetscCallMPI(MPIU_Isend(b, ncols, stype[i], sprocs[i], tag, comm, swaits + i));
5652636ff26SBarry Smith 
5669566063dSJacob Faibussowitsch   if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi, rwaits, MPI_STATUSES_IGNORE));
5679566063dSJacob Faibussowitsch   if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi, swaits, MPI_STATUSES_IGNORE));
568f32d5d43SBarry Smith 
5699566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL));
5709566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL));
5719566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B, &b));
5729566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(workB, &rvalues));
5733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57487753ddeSHong Zhang }
575f32d5d43SBarry Smith 
576d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A, Mat B, Mat C)
577d71ae5a4SJacob Faibussowitsch {
578f32d5d43SBarry Smith   Mat_MPIAIJ      *aij    = (Mat_MPIAIJ *)A->data;
579f32d5d43SBarry Smith   Mat_MPIDense    *bdense = (Mat_MPIDense *)B->data;
580f32d5d43SBarry Smith   Mat_MPIDense    *cdense = (Mat_MPIDense *)C->data;
581f32d5d43SBarry Smith   Mat              workB;
58287753ddeSHong Zhang   MPIAIJ_MPIDense *contents;
5839123193aSHong Zhang 
5849123193aSHong Zhang   PetscFunctionBegin;
5856718818eSStefano Zampini   MatCheckProduct(C, 3);
58628b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5876718818eSStefano Zampini   contents = (MPIAIJ_MPIDense *)C->product->data;
588f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B */
5895ea7661aSPierre Jolivet   /* TODO: this calls a symbolic multiplication every time, which could be avoided */
590fb842aefSJose E. Roman   PetscCall(MatMatMult(aij->A, bdense->A, MAT_REUSE_MATRIX, PETSC_CURRENT, &cdense->A));
5915ea7661aSPierre Jolivet   if (contents->workB->cmap->n == B->cmap->N) {
59287753ddeSHong Zhang     /* get off processor parts of B needed to complete C=A*B */
5939566063dSJacob Faibussowitsch     PetscCall(MatMPIDenseScatter(A, B, 0, C, &workB));
594f32d5d43SBarry Smith 
595f32d5d43SBarry Smith     /* off-diagonal block of A times nonlocal rows of B */
5969566063dSJacob Faibussowitsch     PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
59787753ddeSHong Zhang   } else {
5985ea7661aSPierre Jolivet     Mat       Bb, Cb;
5996497c311SBarry Smith     PetscInt  BN = B->cmap->N, n = contents->workB->cmap->n;
600664c1e85SStefano Zampini     PetscBool ccpu;
60187753ddeSHong Zhang 
60208401ef6SPierre Jolivet     PetscCheck(n > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Column block size %" PetscInt_FMT " must be positive", n);
603664c1e85SStefano Zampini     /* Prevent from unneeded copies back and forth from the GPU
604664c1e85SStefano Zampini        when getting and restoring the submatrix
605664c1e85SStefano Zampini        We need a proper GPU code for AIJ * dense in parallel */
6069566063dSJacob Faibussowitsch     PetscCall(MatBoundToCPU(C, &ccpu));
6079566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C, PETSC_TRUE));
6086497c311SBarry Smith     for (PetscInt i = 0; i < BN; i += n) {
609a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(B, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Bb));
610a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(C, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Cb));
61187753ddeSHong Zhang 
6125ea7661aSPierre Jolivet       /* get off processor parts of B needed to complete C=A*B */
6139566063dSJacob Faibussowitsch       PetscCall(MatMPIDenseScatter(A, Bb, (i + n) > BN, C, &workB));
6145ea7661aSPierre Jolivet 
6155ea7661aSPierre Jolivet       /* off-diagonal block of A times nonlocal rows of B */
6165ea7661aSPierre Jolivet       cdense = (Mat_MPIDense *)Cb->data;
6179566063dSJacob Faibussowitsch       PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
6189566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(B, &Bb));
6199566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(C, &Cb));
62087753ddeSHong Zhang     }
6219566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C, ccpu));
62287753ddeSHong Zhang   }
6233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6249123193aSHong Zhang }
625cf1a0672SHong Zhang 
626d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A, Mat P, Mat C)
627d71ae5a4SJacob Faibussowitsch {
628cf1a0672SHong Zhang   Mat_MPIAIJ          *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
629f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data;
630f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data;
631cf1a0672SHong Zhang   PetscInt            *adi = ad->i, *adj, *aoi = ao->i, *aoj;
632cf1a0672SHong Zhang   PetscScalar         *ada, *aoa, *cda = cd->a, *coa = co->a;
633cf1a0672SHong Zhang   Mat_SeqAIJ          *p_loc, *p_oth;
634cf1a0672SHong Zhang   PetscInt            *pi_loc, *pj_loc, *pi_oth, *pj_oth, *pj;
63529825010SHong Zhang   PetscScalar         *pa_loc, *pa_oth, *pa, valtmp, *ca;
63629825010SHong Zhang   PetscInt             cm = C->rmap->n, anz, pnz;
637cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
63880da8df7SHong Zhang   PetscScalar         *apa_sparse;
639ce496241SStefano Zampini   const PetscScalar   *dummy;
640cf1a0672SHong Zhang   PetscInt            *api, *apj, *apJ, i, j, k, row;
64129825010SHong Zhang   PetscInt             cstart = C->cmap->rstart;
64229825010SHong Zhang   PetscInt             cdnz, conz, k0, k1, nextp;
643a7c7454dSHong Zhang   MPI_Comm             comm;
644a7c7454dSHong Zhang   PetscMPIInt          size;
6451634b032SHong Zhang 
6461634b032SHong Zhang   PetscFunctionBegin;
6476718818eSStefano Zampini   MatCheckProduct(C, 3);
648cc1eb50dSBarry Smith   ptap = (MatProductCtx_APMPI *)C->product->data;
64928b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
6509566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
6519566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
652aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
653a7c7454dSHong Zhang 
65465e4b4d4SStefano Zampini   /* flag CPU mask for C */
65565e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
65665e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
65765e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
65865e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
65965e4b4d4SStefano Zampini #endif
66080da8df7SHong Zhang   apa_sparse = ptap->apa;
66180da8df7SHong Zhang 
662cf1a0672SHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
663cf1a0672SHong Zhang   /* update numerical values of P_oth and P_loc */
6649566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
6659566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
666cf1a0672SHong Zhang 
667cf1a0672SHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
668cf1a0672SHong Zhang   /* get data from symbolic products */
669f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
6709371c9d4SSatish Balay   pi_loc = p_loc->i;
6719371c9d4SSatish Balay   pj_loc = p_loc->j;
6729371c9d4SSatish Balay   pa_loc = p_loc->a;
673a7c7454dSHong Zhang   if (size > 1) {
674f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
6759371c9d4SSatish Balay     pi_oth = p_oth->i;
6769371c9d4SSatish Balay     pj_oth = p_oth->j;
6779371c9d4SSatish Balay     pa_oth = p_oth->a;
67820e3dc75SHong Zhang   } else {
6799371c9d4SSatish Balay     p_oth  = NULL;
6809371c9d4SSatish Balay     pi_oth = NULL;
6819371c9d4SSatish Balay     pj_oth = NULL;
6829371c9d4SSatish Balay     pa_oth = NULL;
683a7c7454dSHong Zhang   }
684cf1a0672SHong Zhang 
685ce496241SStefano Zampini   /* trigger copy to CPU */
6869566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy));
6879566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy));
6889566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy));
6899566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy));
69029825010SHong Zhang   api = ptap->api;
69129825010SHong Zhang   apj = ptap->apj;
692cf1a0672SHong Zhang   for (i = 0; i < cm; i++) {
69329825010SHong Zhang     apJ = apj + api[i];
69429825010SHong Zhang 
695cf1a0672SHong Zhang     /* diagonal portion of A */
696cf1a0672SHong Zhang     anz = adi[i + 1] - adi[i];
697cf1a0672SHong Zhang     adj = ad->j + adi[i];
698cf1a0672SHong Zhang     ada = ad->a + adi[i];
699cf1a0672SHong Zhang     for (j = 0; j < anz; j++) {
700cf1a0672SHong Zhang       row = adj[j];
701cf1a0672SHong Zhang       pnz = pi_loc[row + 1] - pi_loc[row];
702cf1a0672SHong Zhang       pj  = pj_loc + pi_loc[row];
703cf1a0672SHong Zhang       pa  = pa_loc + pi_loc[row];
70429825010SHong Zhang       /* perform sparse axpy */
705cf1a0672SHong Zhang       valtmp = ada[j];
70629825010SHong Zhang       nextp  = 0;
70729825010SHong Zhang       for (k = 0; nextp < pnz; k++) {
70829825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
70929825010SHong Zhang           apa_sparse[k] += valtmp * pa[nextp++];
71029825010SHong Zhang         }
7111634b032SHong Zhang       }
7129566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * pnz));
713cf1a0672SHong Zhang     }
7141634b032SHong Zhang 
715cf1a0672SHong Zhang     /* off-diagonal portion of A */
716cf1a0672SHong Zhang     anz = aoi[i + 1] - aoi[i];
7178e3a54c0SPierre Jolivet     aoj = PetscSafePointerPlusOffset(ao->j, aoi[i]);
7188e3a54c0SPierre Jolivet     aoa = PetscSafePointerPlusOffset(ao->a, aoi[i]);
719cf1a0672SHong Zhang     for (j = 0; j < anz; j++) {
720cf1a0672SHong Zhang       row = aoj[j];
721cf1a0672SHong Zhang       pnz = pi_oth[row + 1] - pi_oth[row];
722cf1a0672SHong Zhang       pj  = pj_oth + pi_oth[row];
723cf1a0672SHong Zhang       pa  = pa_oth + pi_oth[row];
72429825010SHong Zhang       /* perform sparse axpy */
725cf1a0672SHong Zhang       valtmp = aoa[j];
72629825010SHong Zhang       nextp  = 0;
72729825010SHong Zhang       for (k = 0; nextp < pnz; k++) {
72829825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
72929825010SHong Zhang           apa_sparse[k] += valtmp * pa[nextp++];
73029825010SHong Zhang         }
731cf1a0672SHong Zhang       }
7329566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * pnz));
733cf1a0672SHong Zhang     }
7341634b032SHong Zhang 
735cf1a0672SHong Zhang     /* set values in C */
736cf1a0672SHong Zhang     cdnz = cd->i[i + 1] - cd->i[i];
737cf1a0672SHong Zhang     conz = co->i[i + 1] - co->i[i];
7381634b032SHong Zhang 
739910cf402Sprj-     /* 1st off-diagonal part of C */
7408e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
741cf1a0672SHong Zhang     k  = 0;
742cf1a0672SHong Zhang     for (k0 = 0; k0 < conz; k0++) {
743cf1a0672SHong Zhang       if (apJ[k] >= cstart) break;
74429825010SHong Zhang       ca[k0]        = apa_sparse[k];
74529825010SHong Zhang       apa_sparse[k] = 0.0;
746cf1a0672SHong Zhang       k++;
747cf1a0672SHong Zhang     }
7481634b032SHong Zhang 
749cf1a0672SHong Zhang     /* diagonal part of C */
750cf1a0672SHong Zhang     ca = cda + cd->i[i];
751cf1a0672SHong Zhang     for (k1 = 0; k1 < cdnz; k1++) {
75229825010SHong Zhang       ca[k1]        = apa_sparse[k];
75329825010SHong Zhang       apa_sparse[k] = 0.0;
754cf1a0672SHong Zhang       k++;
755cf1a0672SHong Zhang     }
756cf1a0672SHong Zhang 
757910cf402Sprj-     /* 2nd off-diagonal part of C */
7588e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
759cf1a0672SHong Zhang     for (; k0 < conz; k0++) {
76029825010SHong Zhang       ca[k0]        = apa_sparse[k];
76129825010SHong Zhang       apa_sparse[k] = 0.0;
762cf1a0672SHong Zhang       k++;
763cf1a0672SHong Zhang     }
764cf1a0672SHong Zhang   }
7659566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
7669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
7673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
768cf1a0672SHong Zhang }
769cf1a0672SHong Zhang 
7700fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */
771d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A, Mat P, PetscReal fill, Mat C)
772d71ae5a4SJacob Faibussowitsch {
773ce94432eSBarry Smith   MPI_Comm             comm;
774a7c7454dSHong Zhang   PetscMPIInt          size;
775cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
7760298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
7776718818eSStefano Zampini   Mat_MPIAIJ          *a  = (Mat_MPIAIJ *)A->data;
778f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth;
7797dbaa2c6Sandi selinger   PetscInt            *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
780cf1a0672SHong Zhang   PetscInt            *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
7818c78258cSHong Zhang   PetscInt             i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi, *lnk, apnz_max = 1;
782e5ab8c0aSKarl Rupp   PetscInt             am = A->rmap->n, pn = P->cmap->n, pm = P->rmap->n, lsize = pn + 20;
783cf1a0672SHong Zhang   PetscReal            afill;
784b92f168fSBarry Smith   MatType              mtype;
785cf1a0672SHong Zhang 
786cf1a0672SHong Zhang   PetscFunctionBegin;
7876718818eSStefano Zampini   MatCheckProduct(C, 4);
78828b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
7899566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
7909566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
791a7c7454dSHong Zhang 
792cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
7939566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
794cf1a0672SHong Zhang 
795cf1a0672SHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
7969566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
79719f0e57aSHong Zhang 
798cf1a0672SHong Zhang   /* get P_loc by taking all local rows of P */
7999566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
800cf1a0672SHong Zhang 
801f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
8029371c9d4SSatish Balay   pi_loc = p_loc->i;
8039371c9d4SSatish Balay   pj_loc = p_loc->j;
804a7c7454dSHong Zhang   if (size > 1) {
805f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
8069371c9d4SSatish Balay     pi_oth = p_oth->i;
8079371c9d4SSatish Balay     pj_oth = p_oth->j;
808968382fdSHong Zhang   } else {
80920e3dc75SHong Zhang     p_oth  = NULL;
8109371c9d4SSatish Balay     pi_oth = NULL;
8119371c9d4SSatish Balay     pj_oth = NULL;
812a7c7454dSHong Zhang   }
813cf1a0672SHong Zhang 
814cf1a0672SHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
81584648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &api));
816cf1a0672SHong Zhang   ptap->api = api;
817cf1a0672SHong Zhang   api[0]    = 0;
818cf1a0672SHong Zhang 
8199566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(lsize, &lnk));
820cf1a0672SHong Zhang 
821cf1a0672SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
8229566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
823cf1a0672SHong Zhang   current_space = free_space;
824d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
825cf1a0672SHong Zhang   for (i = 0; i < am; i++) {
826cf1a0672SHong Zhang     /* diagonal portion of A */
827cf1a0672SHong Zhang     nzi = adi[i + 1] - adi[i];
828cf1a0672SHong Zhang     for (j = 0; j < nzi; j++) {
829cf1a0672SHong Zhang       row  = *adj++;
830cf1a0672SHong Zhang       pnz  = pi_loc[row + 1] - pi_loc[row];
831cf1a0672SHong Zhang       Jptr = pj_loc + pi_loc[row];
8328a210135Sandi selinger       /* Expand list if it is not long enough */
8338328dd82Sandi selinger       if (pnz + apnz_max > lsize) {
8348328dd82Sandi selinger         lsize = pnz + apnz_max;
8359566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8368a210135Sandi selinger       }
837cf1a0672SHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
8389566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8398a210135Sandi selinger       apnz       = *lnk; /* The first element in the list is the number of items in the list */
8408a210135Sandi selinger       api[i + 1] = api[i] + apnz;
8418c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
842cf1a0672SHong Zhang     }
843cf1a0672SHong Zhang     /* off-diagonal portion of A */
844cf1a0672SHong Zhang     nzi = aoi[i + 1] - aoi[i];
845cf1a0672SHong Zhang     for (j = 0; j < nzi; j++) {
846cf1a0672SHong Zhang       row  = *aoj++;
847cf1a0672SHong Zhang       pnz  = pi_oth[row + 1] - pi_oth[row];
848cf1a0672SHong Zhang       Jptr = pj_oth + pi_oth[row];
8498a210135Sandi selinger       /* Expand list if it is not long enough */
8508328dd82Sandi selinger       if (pnz + apnz_max > lsize) {
8518328dd82Sandi selinger         lsize = pnz + apnz_max;
8529566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8538a210135Sandi selinger       }
8548a210135Sandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
8559566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8568a210135Sandi selinger       apnz       = *lnk; /* The first element in the list is the number of items in the list */
8578a210135Sandi selinger       api[i + 1] = api[i] + apnz;
8588c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
859cf1a0672SHong Zhang     }
8608c78258cSHong Zhang 
8618c78258cSHong Zhang     /* add missing diagonal entry */
8628c78258cSHong Zhang     if (C->force_diagonals) {
8638c78258cSHong Zhang       j = i + rstart; /* column index */
8649566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1, &j, lnk));
8658c78258cSHong Zhang     }
8668c78258cSHong Zhang 
867f84c536bSHong Zhang     apnz       = *lnk;
868cf1a0672SHong Zhang     api[i + 1] = api[i] + apnz;
8698a210135Sandi selinger     if (apnz > apnz_max) apnz_max = apnz;
870cf1a0672SHong Zhang 
871cf1a0672SHong Zhang     /* if free space is not available, double the total space in the list */
872cf1a0672SHong Zhang     if (current_space->local_remaining < apnz) {
8739566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), &current_space));
874cf1a0672SHong Zhang       nspacedouble++;
875cf1a0672SHong Zhang     }
876cf1a0672SHong Zhang 
877cf1a0672SHong Zhang     /* Copy data into free space, then initialize lnk */
8789566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(apnz, current_space->array, lnk));
8799566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
8802205254eSKarl Rupp 
881cf1a0672SHong Zhang     current_space->array += apnz;
882cf1a0672SHong Zhang     current_space->local_used += apnz;
883cf1a0672SHong Zhang     current_space->local_remaining -= apnz;
884cf1a0672SHong Zhang   }
885cf1a0672SHong Zhang 
886cf1a0672SHong Zhang   /* Allocate space for apj, initialize apj, and */
887cf1a0672SHong Zhang   /* destroy list of free space and other temporary array(s) */
88884648c2dSPierre Jolivet   PetscCall(PetscMalloc1(api[am], &ptap->apj));
889cf1a0672SHong Zhang   apj = ptap->apj;
8909566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
8919566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
892cf1a0672SHong Zhang 
8934222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
8949566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
8959566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
8969566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
8979566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
8989566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
899d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
900cf1a0672SHong Zhang 
9014222ddf1SHong Zhang   /* malloc apa for assembly C */
9029566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(apnz_max, &ptap->apa));
90317f75172Sandi selinger 
9049566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
905*799b351eSPierre Jolivet   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
9069566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
9079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
9089566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
909cf1a0672SHong Zhang 
9104222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
9114222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
912cf1a0672SHong Zhang 
9134222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
9146718818eSStefano Zampini   C->product->data    = ptap;
915cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult;
916cf1a0672SHong Zhang 
917cf1a0672SHong Zhang   /* set MatInfo */
918118727c9SMark F. Adams   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
919cf1a0672SHong Zhang   if (afill < 1.0) afill = 1.0;
9204222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
9214222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
9224222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
923cf1a0672SHong Zhang 
924cf1a0672SHong Zhang #if defined(PETSC_USE_INFO)
925cf1a0672SHong Zhang   if (api[am]) {
9269566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
9279566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
928cf1a0672SHong Zhang   } else {
9299566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
930cf1a0672SHong Zhang   }
931cf1a0672SHong Zhang #endif
9323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9331634b032SHong Zhang }
934f96d37fcSHong Zhang 
935a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication.  */
936a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the    */
937a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once.     */
938d71ae5a4SJacob Faibussowitsch static void Merge3SortedArrays(PetscInt size1, PetscInt *in1, PetscInt size2, PetscInt *in2, PetscInt size3, PetscInt *in3, PetscInt *size4, PetscInt *out)
939d71ae5a4SJacob Faibussowitsch {
940a9d7e0ccSandi selinger   int i = 0, j = 0, k = 0, l = 0;
941a9d7e0ccSandi selinger 
942a9d7e0ccSandi selinger   /* Traverse all three arrays */
943a9d7e0ccSandi selinger   while (i < size1 && j < size2 && k < size3) {
944a9d7e0ccSandi selinger     if (in1[i] < in2[j] && in1[i] < in3[k]) {
945a9d7e0ccSandi selinger       out[l++] = in1[i++];
9469371c9d4SSatish Balay     } else if (in2[j] < in1[i] && in2[j] < in3[k]) {
947a9d7e0ccSandi selinger       out[l++] = in2[j++];
9489371c9d4SSatish Balay     } else if (in3[k] < in1[i] && in3[k] < in2[j]) {
949a9d7e0ccSandi selinger       out[l++] = in3[k++];
9509371c9d4SSatish Balay     } else if (in1[i] == in2[j] && in1[i] < in3[k]) {
951a9d7e0ccSandi selinger       out[l++] = in1[i];
952a9d7e0ccSandi selinger       i++, j++;
9539371c9d4SSatish Balay     } else if (in1[i] == in3[k] && in1[i] < in2[j]) {
954a9d7e0ccSandi selinger       out[l++] = in1[i];
955a9d7e0ccSandi selinger       i++, k++;
9569371c9d4SSatish Balay     } else if (in3[k] == in2[j] && in2[j] < in1[i]) {
957a9d7e0ccSandi selinger       out[l++] = in2[j];
958a9d7e0ccSandi selinger       k++, j++;
9599371c9d4SSatish Balay     } else if (in1[i] == in2[j] && in1[i] == in3[k]) {
960a9d7e0ccSandi selinger       out[l++] = in1[i];
961a9d7e0ccSandi selinger       i++, j++, k++;
962a9d7e0ccSandi selinger     }
963a9d7e0ccSandi selinger   }
964a9d7e0ccSandi selinger 
965a9d7e0ccSandi selinger   /* Traverse two remaining arrays */
966a9d7e0ccSandi selinger   while (i < size1 && j < size2) {
967a9d7e0ccSandi selinger     if (in1[i] < in2[j]) {
968a9d7e0ccSandi selinger       out[l++] = in1[i++];
9699371c9d4SSatish Balay     } else if (in1[i] > in2[j]) {
970a9d7e0ccSandi selinger       out[l++] = in2[j++];
9719371c9d4SSatish Balay     } else {
972a9d7e0ccSandi selinger       out[l++] = in1[i];
973a9d7e0ccSandi selinger       i++, j++;
974a9d7e0ccSandi selinger     }
975a9d7e0ccSandi selinger   }
976a9d7e0ccSandi selinger 
977a9d7e0ccSandi selinger   while (i < size1 && k < size3) {
978a9d7e0ccSandi selinger     if (in1[i] < in3[k]) {
979a9d7e0ccSandi selinger       out[l++] = in1[i++];
9809371c9d4SSatish Balay     } else if (in1[i] > in3[k]) {
981a9d7e0ccSandi selinger       out[l++] = in3[k++];
9829371c9d4SSatish Balay     } else {
983a9d7e0ccSandi selinger       out[l++] = in1[i];
984a9d7e0ccSandi selinger       i++, k++;
985a9d7e0ccSandi selinger     }
986a9d7e0ccSandi selinger   }
987a9d7e0ccSandi selinger 
988a9d7e0ccSandi selinger   while (k < size3 && j < size2) {
989a9d7e0ccSandi selinger     if (in3[k] < in2[j]) {
990a9d7e0ccSandi selinger       out[l++] = in3[k++];
9919371c9d4SSatish Balay     } else if (in3[k] > in2[j]) {
992a9d7e0ccSandi selinger       out[l++] = in2[j++];
9939371c9d4SSatish Balay     } else {
994a9d7e0ccSandi selinger       out[l++] = in3[k];
995a9d7e0ccSandi selinger       k++, j++;
996a9d7e0ccSandi selinger     }
997a9d7e0ccSandi selinger   }
998a9d7e0ccSandi selinger 
999a9d7e0ccSandi selinger   /* Traverse one remaining array */
1000a9d7e0ccSandi selinger   while (i < size1) out[l++] = in1[i++];
1001a9d7e0ccSandi selinger   while (j < size2) out[l++] = in2[j++];
1002a9d7e0ccSandi selinger   while (k < size3) out[l++] = in3[k++];
1003a9d7e0ccSandi selinger 
1004a9d7e0ccSandi selinger   *size4 = l;
1005a9d7e0ccSandi selinger }
1006a9d7e0ccSandi selinger 
100773b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and  */
100873b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential)      */
100973b67375Sandi selinger /* matrix-matrix multiplications.  */
1010d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C)
1011d71ae5a4SJacob Faibussowitsch {
1012a9d7e0ccSandi selinger   MPI_Comm             comm;
1013a9d7e0ccSandi selinger   PetscMPIInt          size;
1014cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
1015a9d7e0ccSandi selinger   PetscFreeSpaceList   free_space_diag = NULL, current_space = NULL;
1016a9d7e0ccSandi selinger   Mat_MPIAIJ          *a  = (Mat_MPIAIJ *)A->data;
1017f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc;
1018a9d7e0ccSandi selinger   Mat_MPIAIJ          *p = (Mat_MPIAIJ *)P->data;
1019a9d7e0ccSandi selinger   Mat_SeqAIJ          *adpd_seq, *p_off, *aopoth_seq;
1020a9d7e0ccSandi selinger   PetscInt             adponz, adpdnz;
10217dbaa2c6Sandi selinger   PetscInt            *pi_loc, *dnz, *onz;
1022a9d7e0ccSandi selinger   PetscInt            *adi = ad->i, *adj = ad->j, *aoi = ao->i, rstart = A->rmap->rstart;
10239371c9d4SSatish Balay   PetscInt            *lnk, i, i1 = 0, pnz, row, *adpoi, *adpoj, *api, *adpoJ, *aopJ, *apJ, *Jptr, aopnz, nspacedouble = 0, j, nzi, *apj, apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj;
1024a016958eSandi selinger   PetscInt             am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n, p_colstart, p_colend;
1025a9d7e0ccSandi selinger   PetscBT              lnkbt;
1026a9d7e0ccSandi selinger   PetscReal            afill;
1027a9d7e0ccSandi selinger   PetscMPIInt          rank;
1028a9d7e0ccSandi selinger   Mat                  adpd, aopoth;
1029b92f168fSBarry Smith   MatType              mtype;
1030e83e5f86SFande Kong   const char          *prefix;
1031a9d7e0ccSandi selinger 
1032a9d7e0ccSandi selinger   PetscFunctionBegin;
10336718818eSStefano Zampini   MatCheckProduct(C, 4);
103428b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
10359566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
10369566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
10379566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
10389566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend));
1039a9d7e0ccSandi selinger 
1040cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
10419566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1042a9d7e0ccSandi selinger 
1043a9d7e0ccSandi selinger   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
10449566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1045a9d7e0ccSandi selinger 
1046a9d7e0ccSandi selinger   /* get P_loc by taking all local rows of P */
10479566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
1048a9d7e0ccSandi selinger 
1049f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
1050a9d7e0ccSandi selinger   pi_loc = p_loc->i;
1051a9d7e0ccSandi selinger 
1052a9d7e0ccSandi selinger   /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */
105384648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &api));
105484648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &adpoi));
1055a9d7e0ccSandi selinger 
1056a9d7e0ccSandi selinger   adpoi[0]  = 0;
1057a9d7e0ccSandi selinger   ptap->api = api;
1058a9d7e0ccSandi selinger   api[0]    = 0;
1059a9d7e0ccSandi selinger 
1060a9d7e0ccSandi selinger   /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */
10619566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
1062d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
1063a9d7e0ccSandi selinger 
1064a9d7e0ccSandi selinger   /* Symbolic calc of A_loc_diag * P_loc_diag */
10659566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
10669566063dSJacob Faibussowitsch   PetscCall(MatProductCreate(a->A, p->A, NULL, &adpd));
10679566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
10689566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(adpd, prefix));
10699566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(adpd, "inner_diag_"));
10704222ddf1SHong Zhang 
10719566063dSJacob Faibussowitsch   PetscCall(MatProductSetType(adpd, MATPRODUCT_AB));
10729566063dSJacob Faibussowitsch   PetscCall(MatProductSetAlgorithm(adpd, "sorted"));
10739566063dSJacob Faibussowitsch   PetscCall(MatProductSetFill(adpd, fill));
10749566063dSJacob Faibussowitsch   PetscCall(MatProductSetFromOptions(adpd));
10758c78258cSHong Zhang 
10768c78258cSHong Zhang   adpd->force_diagonals = C->force_diagonals;
10779566063dSJacob Faibussowitsch   PetscCall(MatProductSymbolic(adpd));
10784222ddf1SHong Zhang 
1079a9d7e0ccSandi selinger   adpd_seq = (Mat_SeqAIJ *)((adpd)->data);
10809371c9d4SSatish Balay   adpdi    = adpd_seq->i;
10819371c9d4SSatish Balay   adpdj    = adpd_seq->j;
1082f4f49eeaSPierre Jolivet   p_off    = (Mat_SeqAIJ *)p->B->data;
10839371c9d4SSatish Balay   poff_i   = p_off->i;
10849371c9d4SSatish Balay   poff_j   = p_off->j;
1085a9d7e0ccSandi selinger 
108673b67375Sandi selinger   /* j_temp stores indices of a result row before they are added to the linked list */
108784648c2dSPierre Jolivet   PetscCall(PetscMalloc1(pN, &j_temp));
1088a9d7e0ccSandi selinger 
1089a9d7e0ccSandi selinger   /* Symbolic calc of the A_diag * p_loc_off */
1090a9d7e0ccSandi selinger   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
10919566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space_diag));
1092a9d7e0ccSandi selinger   current_space = free_space_diag;
1093a9d7e0ccSandi selinger 
1094a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1095a9d7e0ccSandi selinger     /* A_diag * P_loc_off */
1096a9d7e0ccSandi selinger     nzi = adi[i + 1] - adi[i];
1097a9d7e0ccSandi selinger     for (j = 0; j < nzi; j++) {
1098a9d7e0ccSandi selinger       row  = *adj++;
1099a9d7e0ccSandi selinger       pnz  = poff_i[row + 1] - poff_i[row];
1100a9d7e0ccSandi selinger       Jptr = poff_j + poff_i[row];
1101ad540459SPierre Jolivet       for (i1 = 0; i1 < pnz; i1++) j_temp[i1] = p->garray[Jptr[i1]];
1102a9d7e0ccSandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
11039566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, j_temp, lnk, lnkbt));
1104a9d7e0ccSandi selinger     }
1105a9d7e0ccSandi selinger 
1106a9d7e0ccSandi selinger     adponz       = lnk[0];
1107a9d7e0ccSandi selinger     adpoi[i + 1] = adpoi[i] + adponz;
1108a9d7e0ccSandi selinger 
1109a9d7e0ccSandi selinger     /* if free space is not available, double the total space in the list */
1110a9d7e0ccSandi selinger     if (current_space->local_remaining < adponz) {
11119566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz, current_space->total_array_size), &current_space));
1112a9d7e0ccSandi selinger       nspacedouble++;
1113a9d7e0ccSandi selinger     }
1114a9d7e0ccSandi selinger 
1115a9d7e0ccSandi selinger     /* Copy data into free space, then initialize lnk */
11169566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN, adponz, current_space->array, lnk, lnkbt));
1117a9d7e0ccSandi selinger 
1118a9d7e0ccSandi selinger     current_space->array += adponz;
1119a9d7e0ccSandi selinger     current_space->local_used += adponz;
1120a9d7e0ccSandi selinger     current_space->local_remaining -= adponz;
1121a9d7e0ccSandi selinger   }
1122a9d7e0ccSandi selinger 
1123a9d7e0ccSandi selinger   /* Symbolic calc of A_off * P_oth */
11249566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(a->B, prefix));
11259566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(a->B, "inner_offdiag_"));
11269566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &aopoth));
11279566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth));
1128a9d7e0ccSandi selinger   aopoth_seq = (Mat_SeqAIJ *)((aopoth)->data);
11299371c9d4SSatish Balay   aopothi    = aopoth_seq->i;
11309371c9d4SSatish Balay   aopothj    = aopoth_seq->j;
1131a9d7e0ccSandi selinger 
1132a9d7e0ccSandi selinger   /* Allocate space for apj, adpj, aopj, ... */
1133a9d7e0ccSandi selinger   /* destroy lists of free space and other temporary array(s) */
1134a9d7e0ccSandi selinger 
113584648c2dSPierre Jolivet   PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am], &ptap->apj));
113684648c2dSPierre Jolivet   PetscCall(PetscMalloc1(adpoi[am], &adpoj));
1137a9d7e0ccSandi selinger 
1138a9d7e0ccSandi selinger   /* Copy from linked list to j-array */
11399566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space_diag, adpoj));
11409566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
1141a9d7e0ccSandi selinger 
1142a9d7e0ccSandi selinger   adpoJ = adpoj;
1143a9d7e0ccSandi selinger   adpdJ = adpdj;
1144a9d7e0ccSandi selinger   aopJ  = aopothj;
1145a9d7e0ccSandi selinger   apj   = ptap->apj;
1146a9d7e0ccSandi selinger   apJ   = apj; /* still empty */
1147a9d7e0ccSandi selinger 
1148a9d7e0ccSandi selinger   /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */
1149a9d7e0ccSandi selinger   /* A_diag * P_loc_diag to get A*P */
1150a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1151a9d7e0ccSandi selinger     aopnz  = aopothi[i + 1] - aopothi[i];
1152a9d7e0ccSandi selinger     adponz = adpoi[i + 1] - adpoi[i];
1153a9d7e0ccSandi selinger     adpdnz = adpdi[i + 1] - adpdi[i];
1154a9d7e0ccSandi selinger 
1155a9d7e0ccSandi selinger     /* Correct indices from A_diag*P_diag */
1156ad540459SPierre Jolivet     for (i1 = 0; i1 < adpdnz; i1++) adpdJ[i1] += p_colstart;
1157a9d7e0ccSandi selinger     /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */
1158a9d7e0ccSandi selinger     Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ);
11599566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, apJ, dnz, onz));
1160a9d7e0ccSandi selinger 
1161a9d7e0ccSandi selinger     aopJ += aopnz;
1162a9d7e0ccSandi selinger     adpoJ += adponz;
1163a9d7e0ccSandi selinger     adpdJ += adpdnz;
1164a9d7e0ccSandi selinger     apJ += apnz;
1165a9d7e0ccSandi selinger     api[i + 1] = api[i] + apnz;
1166a9d7e0ccSandi selinger   }
1167a9d7e0ccSandi selinger 
1168a9d7e0ccSandi selinger   /* malloc apa to store dense row A[i,:]*P */
116984648c2dSPierre Jolivet   PetscCall(PetscCalloc1(pN, &ptap->apa));
1170a9d7e0ccSandi selinger 
11714222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
11729566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
11739566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
11749566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
11759566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
11769566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1177d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
117817f75172Sandi selinger 
11799566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
1180*799b351eSPierre Jolivet   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
11819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
11829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
11839566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
118417f75172Sandi selinger 
11854222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
11864222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
1187a9d7e0ccSandi selinger 
11884222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
11896718818eSStefano Zampini   C->product->data    = ptap;
1190cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult;
1191a9d7e0ccSandi selinger 
1192a9d7e0ccSandi selinger   /* set MatInfo */
119373b67375Sandi selinger   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
119473b67375Sandi selinger   if (afill < 1.0) afill = 1.0;
11954222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
11964222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
11974222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1198a9d7e0ccSandi selinger 
1199a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO)
1200a9d7e0ccSandi selinger   if (api[am]) {
12019566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
12029566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
1203a9d7e0ccSandi selinger   } else {
12049566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
1205a9d7e0ccSandi selinger   }
1206a9d7e0ccSandi selinger #endif
1207a9d7e0ccSandi selinger 
12089566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&aopoth));
12099566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&adpd));
12109566063dSJacob Faibussowitsch   PetscCall(PetscFree(j_temp));
12119566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoj));
12129566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoi));
12133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1214a9d7e0ccSandi selinger }
1215a9d7e0ccSandi selinger 
1216c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */
1217d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P, Mat A, Mat C)
1218d71ae5a4SJacob Faibussowitsch {
1219cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
122060552ceaSHong Zhang   Mat                  Pt;
1221c216dbf3SHong Zhang 
1222c216dbf3SHong Zhang   PetscFunctionBegin;
12236718818eSStefano Zampini   MatCheckProduct(C, 3);
1224cc1eb50dSBarry Smith   ptap = (MatProductCtx_APMPI *)C->product->data;
122528b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
122628b400f6SJacob Faibussowitsch   PetscCheck(ptap->Pt, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
122760552ceaSHong Zhang 
122860552ceaSHong Zhang   Pt = ptap->Pt;
12291cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(P, Pt));
12309566063dSJacob Faibussowitsch   PetscCall(MatTranspose(P, MAT_REUSE_MATRIX, &Pt));
12319566063dSJacob Faibussowitsch   PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt, A, C));
12323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1233f96d37fcSHong Zhang }
1234f96d37fcSHong Zhang 
1235c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */
1236d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, PetscReal fill, Mat C)
1237d71ae5a4SJacob Faibussowitsch {
1238cc1eb50dSBarry Smith   MatProductCtx_APMPI     *ptap;
12396718818eSStefano Zampini   Mat_MPIAIJ              *p = (Mat_MPIAIJ *)P->data;
1240912837bbSHong Zhang   MPI_Comm                 comm;
1241912837bbSHong Zhang   PetscMPIInt              size, rank;
1242912837bbSHong Zhang   PetscFreeSpaceList       free_space = NULL, current_space = NULL;
12434ede91e3SHong Zhang   PetscInt                 pn = P->cmap->n, aN = A->cmap->N, an = A->cmap->n;
12446497c311SBarry Smith   PetscInt                *lnk, i, k, rstart;
1245912837bbSHong Zhang   PetscBT                  lnkbt;
12466497c311SBarry Smith   PetscMPIInt              tagi, tagj, *len_si, *len_s, *len_ri, nrecv, proc, nsend;
1247ec4bef21SJose E. Roman   PETSC_UNUSED PetscMPIInt icompleted = 0;
12488c78258cSHong Zhang   PetscInt               **buf_rj, **buf_ri, **buf_ri_k, row, ncols, *cols;
12496497c311SBarry Smith   PetscInt                 len, *dnz, *onz, *owners, nzi;
1250912837bbSHong Zhang   PetscInt                 nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1251912837bbSHong Zhang   MPI_Request             *swaits, *rwaits;
1252912837bbSHong Zhang   MPI_Status              *sstatus, rstatus;
1253912837bbSHong Zhang   PetscLayout              rowmap;
1254912837bbSHong Zhang   PetscInt                *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */
1255912837bbSHong Zhang   PetscMPIInt             *len_r, *id_r;          /* array of length of comm->size, store send/recv matrix values */
12567f3e1f30SHong Zhang   PetscInt                *Jptr, *prmap = p->garray, con, j, Crmax;
12574ede91e3SHong Zhang   Mat_SeqAIJ              *a_loc, *c_loc, *c_oth;
1258eec179cfSJacob Faibussowitsch   PetscHMapI               ta;
1259b92f168fSBarry Smith   MatType                  mtype;
1260e83e5f86SFande Kong   const char              *prefix;
1261912837bbSHong Zhang 
1262912837bbSHong Zhang   PetscFunctionBegin;
12639566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
12649566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
12659566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1266912837bbSHong Zhang 
12674222ddf1SHong Zhang   /* create symbolic parallel matrix C */
12689566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
12699566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
1270912837bbSHong Zhang 
12714222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
1272912837bbSHong Zhang 
1273cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
12749566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1275912837bbSHong Zhang 
1276912837bbSHong Zhang   /* (0) compute Rd = Pd^T, Ro = Po^T  */
1277acd337a6SBarry Smith   PetscCall(MatTranspose(p->A, MAT_INITIAL_MATRIX, &ptap->Rd));
1278acd337a6SBarry Smith   PetscCall(MatTranspose(p->B, MAT_INITIAL_MATRIX, &ptap->Ro));
1279912837bbSHong Zhang 
1280669e9c86SHong Zhang   /* (1) compute symbolic A_loc */
12819566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &ptap->A_loc));
1282912837bbSHong Zhang 
12834ede91e3SHong Zhang   /* (2-1) compute symbolic C_oth = Ro*A_loc  */
12849566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
12859566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Ro, prefix));
12869566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Ro, "inner_offdiag_"));
12879566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_oth));
12889566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro, ptap->A_loc, fill, ptap->C_oth));
1289912837bbSHong Zhang 
1290912837bbSHong Zhang   /* (3) send coj of C_oth to other processors  */
1291912837bbSHong Zhang   /* determine row ownership */
12929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &rowmap));
1293912837bbSHong Zhang   rowmap->n  = pn;
1294912837bbSHong Zhang   rowmap->bs = 1;
12959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rowmap));
1296912837bbSHong Zhang   owners = rowmap->range;
1297912837bbSHong Zhang 
1298912837bbSHong Zhang   /* determine the number of messages to send, their lengths */
129984648c2dSPierre Jolivet   PetscCall(PetscMalloc4(size, &len_s, size, &len_si, size, &sstatus, size + 1, &owners_co));
13009566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_s, size));
13019566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_si, size));
1302912837bbSHong Zhang 
1303912837bbSHong Zhang   c_oth = (Mat_SeqAIJ *)ptap->C_oth->data;
13049371c9d4SSatish Balay   coi   = c_oth->i;
13059371c9d4SSatish Balay   coj   = c_oth->j;
1306912837bbSHong Zhang   con   = ptap->C_oth->rmap->n;
1307912837bbSHong Zhang   proc  = 0;
1308912837bbSHong Zhang   for (i = 0; i < con; i++) {
1309912837bbSHong Zhang     while (prmap[i] >= owners[proc + 1]) proc++;
13107f3e1f30SHong Zhang     len_si[proc]++;                     /* num of rows in Co(=Pt*A) to be sent to [proc] */
1311912837bbSHong Zhang     len_s[proc] += coi[i + 1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */
1312912837bbSHong Zhang   }
1313912837bbSHong Zhang 
1314912837bbSHong Zhang   len          = 0; /* max length of buf_si[], see (4) */
1315912837bbSHong Zhang   owners_co[0] = 0;
1316912837bbSHong Zhang   nsend        = 0;
1317912837bbSHong Zhang   for (proc = 0; proc < size; proc++) {
1318912837bbSHong Zhang     owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1319912837bbSHong Zhang     if (len_s[proc]) {
1320912837bbSHong Zhang       nsend++;
1321912837bbSHong Zhang       len_si[proc] = 2 * (len_si[proc] + 1); /* length of buf_si to be sent to [proc] */
1322912837bbSHong Zhang       len += len_si[proc];
1323912837bbSHong Zhang     }
1324912837bbSHong Zhang   }
1325912837bbSHong Zhang 
1326912837bbSHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
13279566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &nrecv));
13289566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, nsend, nrecv, len_s, len_si, &id_r, &len_r, &len_ri));
1329912837bbSHong Zhang 
1330912837bbSHong Zhang   /* post the Irecv and Isend of coj */
13319566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
13329566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, nrecv, id_r, len_r, &buf_rj, &rwaits));
133384648c2dSPierre Jolivet   PetscCall(PetscMalloc1(nsend, &swaits));
1334912837bbSHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1335912837bbSHong Zhang     if (!len_s[proc]) continue;
1336912837bbSHong Zhang     i = owners_co[proc];
13376497c311SBarry Smith     PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1338912837bbSHong Zhang     k++;
1339912837bbSHong Zhang   }
1340912837bbSHong Zhang 
13417f3e1f30SHong Zhang   /* (2-2) compute symbolic C_loc = Rd*A_loc */
13429566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Rd, prefix));
13439566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Rd, "inner_diag_"));
13449566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_loc));
13459566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd, ptap->A_loc, fill, ptap->C_loc));
1346912837bbSHong Zhang   c_loc = (Mat_SeqAIJ *)ptap->C_loc->data;
1347912837bbSHong Zhang 
1348912837bbSHong Zhang   /* receives coj are complete */
134948a46eb9SPierre Jolivet   for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
13509566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
13519566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1352912837bbSHong Zhang 
1353912837bbSHong Zhang   /* add received column indices into ta to update Crmax */
1354f4f49eeaSPierre Jolivet   a_loc = (Mat_SeqAIJ *)ptap->A_loc->data;
1355669e9c86SHong Zhang 
1356669e9c86SHong Zhang   /* create and initialize a linked list */
1357eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(an, &ta)); /* for compute Crmax */
13584ede91e3SHong Zhang   MatRowMergeMax_SeqAIJ(a_loc, ptap->A_loc->rmap->N, ta);
1359669e9c86SHong Zhang 
1360912837bbSHong Zhang   for (k = 0; k < nrecv; k++) { /* k-th received message */
1361912837bbSHong Zhang     Jptr = buf_rj[k];
1362c76ffc5fSJacob Faibussowitsch     for (j = 0; j < len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1));
1363912837bbSHong Zhang   }
1364eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Crmax));
1365eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
1366912837bbSHong Zhang 
1367912837bbSHong Zhang   /* (4) send and recv coi */
13689566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
13699566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, nrecv, id_r, len_ri, &buf_ri, &rwaits));
137084648c2dSPierre Jolivet   PetscCall(PetscMalloc1(len, &buf_s));
1371912837bbSHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1372912837bbSHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1373912837bbSHong Zhang     if (!len_s[proc]) continue;
1374912837bbSHong Zhang     /* form outgoing message for i-structure:
1375912837bbSHong Zhang          buf_si[0]:                 nrows to be sent
1376912837bbSHong Zhang                [1:nrows]:           row index (global)
1377912837bbSHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1378912837bbSHong Zhang     */
1379912837bbSHong Zhang     nrows       = len_si[proc] / 2 - 1; /* num of rows in Co to be sent to [proc] */
1380912837bbSHong Zhang     buf_si_i    = buf_si + nrows + 1;
1381912837bbSHong Zhang     buf_si[0]   = nrows;
1382912837bbSHong Zhang     buf_si_i[0] = 0;
1383912837bbSHong Zhang     nrows       = 0;
1384912837bbSHong Zhang     for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1385912837bbSHong Zhang       nzi                 = coi[i + 1] - coi[i];
1386912837bbSHong Zhang       buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi;   /* i-structure */
1387912837bbSHong Zhang       buf_si[nrows + 1]   = prmap[i] - owners[proc]; /* local row index */
1388912837bbSHong Zhang       nrows++;
1389912837bbSHong Zhang     }
13906497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1391912837bbSHong Zhang     k++;
1392912837bbSHong Zhang     buf_si += len_si[proc];
1393912837bbSHong Zhang   }
139448a46eb9SPierre Jolivet   for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
13959566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
13969566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1397912837bbSHong Zhang 
13989566063dSJacob Faibussowitsch   PetscCall(PetscFree4(len_s, len_si, sstatus, owners_co));
13999566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
14009566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
14019566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1402912837bbSHong Zhang 
14034222ddf1SHong Zhang   /* (5) compute the local portion of C      */
1404bbea24aaSStefano Zampini   /* set initial free space to be Crmax, sufficient for holding nonzeros in each row of C */
14059566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(Crmax, &free_space));
1406912837bbSHong Zhang   current_space = free_space;
1407912837bbSHong Zhang 
14089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(nrecv, &buf_ri_k, nrecv, &nextrow, nrecv, &nextci));
1409912837bbSHong Zhang   for (k = 0; k < nrecv; k++) {
1410912837bbSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1411912837bbSHong Zhang     nrows       = *buf_ri_k[k];
1412912837bbSHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
1413a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1414912837bbSHong Zhang   }
1415912837bbSHong Zhang 
1416d0609cedSBarry Smith   MatPreallocateBegin(comm, pn, an, dnz, onz);
14179566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(Crmax, aN, &lnk, &lnkbt));
14188c78258cSHong Zhang   for (i = 0; i < pn; i++) { /* for each local row of C */
14194222ddf1SHong Zhang     /* add C_loc into C */
1420912837bbSHong Zhang     nzi  = c_loc->i[i + 1] - c_loc->i[i];
1421912837bbSHong Zhang     Jptr = c_loc->j + c_loc->i[i];
14229566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
1423912837bbSHong Zhang 
1424912837bbSHong Zhang     /* add received col data into lnk */
1425912837bbSHong Zhang     for (k = 0; k < nrecv; k++) { /* k-th received message */
1426912837bbSHong Zhang       if (i == *nextrow[k]) {     /* i-th row */
1427912837bbSHong Zhang         nzi  = *(nextci[k] + 1) - *nextci[k];
1428912837bbSHong Zhang         Jptr = buf_rj[k] + *nextci[k];
14299566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
14309371c9d4SSatish Balay         nextrow[k]++;
14319371c9d4SSatish Balay         nextci[k]++;
1432912837bbSHong Zhang       }
1433912837bbSHong Zhang     }
14348c78258cSHong Zhang 
14358c78258cSHong Zhang     /* add missing diagonal entry */
14368c78258cSHong Zhang     if (C->force_diagonals) {
14378c78258cSHong Zhang       k = i + owners[rank]; /* column index */
14389566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1, &k, lnk, lnkbt));
14398c78258cSHong Zhang     }
14408c78258cSHong Zhang 
1441912837bbSHong Zhang     nzi = lnk[0];
1442912837bbSHong Zhang 
1443912837bbSHong Zhang     /* copy data into free space, then initialize lnk */
14449566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(aN, nzi, current_space->array, lnk, lnkbt));
14459566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], nzi, current_space->array, dnz, onz));
1446912837bbSHong Zhang   }
14479566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
14489566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
14499566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceDestroy(free_space));
1450912837bbSHong Zhang 
1451912837bbSHong Zhang   /* local sizes and preallocation */
14529566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, pn, an, PETSC_DETERMINE, PETSC_DETERMINE));
145358b7e2c1SStefano Zampini   PetscCall(PetscLayoutSetBlockSize(C->rmap, P->cmap->bs));
145458b7e2c1SStefano Zampini   PetscCall(PetscLayoutSetBlockSize(C->cmap, A->cmap->bs));
14559566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1456d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
1457912837bbSHong Zhang 
145869be949aSStefano Zampini   /* add C_loc and C_oth to C */
14599566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C, &rstart, NULL));
146069be949aSStefano Zampini   for (i = 0; i < pn; i++) {
14618c78258cSHong Zhang     ncols = c_loc->i[i + 1] - c_loc->i[i];
14628c78258cSHong Zhang     cols  = c_loc->j + c_loc->i[i];
14638c78258cSHong Zhang     row   = rstart + i;
14649566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
14658c78258cSHong Zhang 
146648a46eb9SPierre Jolivet     if (C->force_diagonals) PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, 1, (const PetscInt *)&row, NULL, INSERT_VALUES));
146769be949aSStefano Zampini   }
146869be949aSStefano Zampini   for (i = 0; i < con; i++) {
14698c78258cSHong Zhang     ncols = c_oth->i[i + 1] - c_oth->i[i];
14708c78258cSHong Zhang     cols  = c_oth->j + c_oth->i[i];
14718c78258cSHong Zhang     row   = prmap[i];
14729566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
147369be949aSStefano Zampini   }
14749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
14759566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
14769566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
147769be949aSStefano Zampini 
1478912837bbSHong Zhang   /* members in merge */
14799566063dSJacob Faibussowitsch   PetscCall(PetscFree(id_r));
14809566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_r));
14819566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri[0]));
14829566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri));
14839566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj[0]));
14849566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj));
14859566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rowmap));
1486912837bbSHong Zhang 
14874222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
14886718818eSStefano Zampini   C->product->data    = ptap;
1489cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP;
14903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1491912837bbSHong Zhang }
1492912837bbSHong Zhang 
1493d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, Mat C)
1494d71ae5a4SJacob Faibussowitsch {
14956718818eSStefano Zampini   Mat_MPIAIJ          *p = (Mat_MPIAIJ *)P->data;
1496669e9c86SHong Zhang   Mat_SeqAIJ          *c_seq;
1497cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
1498669e9c86SHong Zhang   Mat                  A_loc, C_loc, C_oth;
1499912837bbSHong Zhang   PetscInt             i, rstart, rend, cm, ncols, row;
1500912837bbSHong Zhang   const PetscInt      *cols;
1501912837bbSHong Zhang   const PetscScalar   *vals;
1502912837bbSHong Zhang 
1503912837bbSHong Zhang   PetscFunctionBegin;
15046718818eSStefano Zampini   MatCheckProduct(C, 3);
1505cc1eb50dSBarry Smith   ptap = (MatProductCtx_APMPI *)C->product->data;
150628b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
150728b400f6SJacob Faibussowitsch   PetscCheck(ptap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
15089566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(C));
1509912837bbSHong Zhang 
1510669e9c86SHong Zhang   /* These matrices are obtained in MatTransposeMatMultSymbolic() */
1511669e9c86SHong Zhang   /* 1) get R = Pd^T, Ro = Po^T */
15121cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(p->A, ptap->Rd));
1513acd337a6SBarry Smith   PetscCall(MatTranspose(p->A, MAT_REUSE_MATRIX, &ptap->Rd));
15141cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(p->B, ptap->Ro));
1515acd337a6SBarry Smith   PetscCall(MatTranspose(p->B, MAT_REUSE_MATRIX, &ptap->Ro));
1516669e9c86SHong Zhang 
1517669e9c86SHong Zhang   /* 2) compute numeric A_loc */
15189566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &ptap->A_loc));
1519912837bbSHong Zhang 
1520669e9c86SHong Zhang   /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */
15214ede91e3SHong Zhang   A_loc = ptap->A_loc;
1522f4f49eeaSPierre Jolivet   PetscCall(ptap->C_loc->ops->matmultnumeric(ptap->Rd, A_loc, ptap->C_loc));
1523f4f49eeaSPierre Jolivet   PetscCall(ptap->C_oth->ops->matmultnumeric(ptap->Ro, A_loc, ptap->C_oth));
1524912837bbSHong Zhang   C_loc = ptap->C_loc;
1525912837bbSHong Zhang   C_oth = ptap->C_oth;
1526912837bbSHong Zhang 
152769be949aSStefano Zampini   /* add C_loc and C_oth to C */
15289566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C, &rstart, &rend));
1529912837bbSHong Zhang 
1530912837bbSHong Zhang   /* C_loc -> C */
1531912837bbSHong Zhang   cm    = C_loc->rmap->N;
1532912837bbSHong Zhang   c_seq = (Mat_SeqAIJ *)C_loc->data;
1533912837bbSHong Zhang   cols  = c_seq->j;
1534912837bbSHong Zhang   vals  = c_seq->a;
1535912837bbSHong Zhang   for (i = 0; i < cm; i++) {
1536912837bbSHong Zhang     ncols = c_seq->i[i + 1] - c_seq->i[i];
1537912837bbSHong Zhang     row   = rstart + i;
15389566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15399371c9d4SSatish Balay     cols += ncols;
15409371c9d4SSatish Balay     vals += ncols;
1541912837bbSHong Zhang   }
1542912837bbSHong Zhang 
1543912837bbSHong Zhang   /* Co -> C, off-processor part */
1544912837bbSHong Zhang   cm    = C_oth->rmap->N;
1545912837bbSHong Zhang   c_seq = (Mat_SeqAIJ *)C_oth->data;
1546912837bbSHong Zhang   cols  = c_seq->j;
1547912837bbSHong Zhang   vals  = c_seq->a;
1548912837bbSHong Zhang   for (i = 0; i < cm; i++) {
1549912837bbSHong Zhang     ncols = c_seq->i[i + 1] - c_seq->i[i];
1550912837bbSHong Zhang     row   = p->garray[i];
15519566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15529371c9d4SSatish Balay     cols += ncols;
15539371c9d4SSatish Balay     vals += ncols;
1554912837bbSHong Zhang   }
15559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
15569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
15579566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
15583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1559912837bbSHong Zhang }
1560912837bbSHong Zhang 
1561d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P, Mat A, Mat C)
1562d71ae5a4SJacob Faibussowitsch {
1563cc1eb50dSBarry Smith   MatMergeSeqsToMPI   *merge;
15646718818eSStefano Zampini   Mat_MPIAIJ          *p  = (Mat_MPIAIJ *)P->data;
1565f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data;
1566cc1eb50dSBarry Smith   MatProductCtx_APMPI *ap;
1567e745005bSHong Zhang   PetscInt            *adj;
1568e745005bSHong Zhang   PetscInt             i, j, k, anz, pnz, row, *cj, nexta;
1569e745005bSHong Zhang   MatScalar           *ada, *ca, valtmp;
1570d6ab1dc0SHong Zhang   PetscInt             am = A->rmap->n, cm = C->rmap->n, pon = (p->B)->cmap->n;
1571ce94432eSBarry Smith   MPI_Comm             comm;
15726497c311SBarry Smith   PetscMPIInt          size, rank, taga, *len_s, proc;
15736497c311SBarry Smith   PetscInt            *owners, nrows, **buf_ri_k, **nextrow, **nextci;
1574d6ab1dc0SHong Zhang   PetscInt           **buf_ri, **buf_rj;
1575d6ab1dc0SHong Zhang   PetscInt             cnz = 0, *bj_i, *bi, *bj, bnz, nextcj; /* bi,bj,ba: local array of C(mpi mat) */
1576d6ab1dc0SHong Zhang   MPI_Request         *s_waits, *r_waits;
1577d6ab1dc0SHong Zhang   MPI_Status          *status;
1578d6ab1dc0SHong Zhang   MatScalar          **abuf_r, *ba_i, *pA, *coa, *ba;
1579ce496241SStefano Zampini   const PetscScalar   *dummy;
15804e201bd7SHong Zhang   PetscInt            *ai, *aj, *coi, *coj, *poJ, *pdJ;
1581d6ab1dc0SHong Zhang   Mat                  A_loc;
1582d6ab1dc0SHong Zhang   Mat_SeqAIJ          *a_loc;
1583d6ab1dc0SHong Zhang 
1584d6ab1dc0SHong Zhang   PetscFunctionBegin;
15856718818eSStefano Zampini   MatCheckProduct(C, 3);
1586cc1eb50dSBarry Smith   ap = (MatProductCtx_APMPI *)C->product->data;
15871cdffd5eSHong Zhang   PetscCheck(ap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be computed. Missing data");
15881cdffd5eSHong Zhang   PetscCheck(ap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
15899566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
15909566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
15919566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1592d6ab1dc0SHong Zhang 
15931cdffd5eSHong Zhang   merge = ap->merge;
1594d6ab1dc0SHong Zhang 
1595e745005bSHong Zhang   /* 2) compute numeric C_seq = P_loc^T*A_loc */
1596d6ab1dc0SHong Zhang   /* get data from symbolic products */
15979371c9d4SSatish Balay   coi = merge->coi;
15989371c9d4SSatish Balay   coj = merge->coj;
159984648c2dSPierre Jolivet   PetscCall(PetscCalloc1(coi[pon], &coa));
16009371c9d4SSatish Balay   bi     = merge->bi;
16019371c9d4SSatish Balay   bj     = merge->bj;
1602d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
160384648c2dSPierre Jolivet   PetscCall(PetscCalloc1(bi[cm], &ba));
1604d6ab1dc0SHong Zhang 
1605d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
16061cdffd5eSHong Zhang   A_loc = ap->A_loc;
16079566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &A_loc));
160857508eceSPierre Jolivet   a_loc = (Mat_SeqAIJ *)A_loc->data;
1609d6ab1dc0SHong Zhang   ai    = a_loc->i;
1610d6ab1dc0SHong Zhang   aj    = a_loc->j;
1611d6ab1dc0SHong Zhang 
1612ce496241SStefano Zampini   /* trigger copy to CPU */
16139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &dummy));
16149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &dummy));
16159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &dummy));
16169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &dummy));
1617d6ab1dc0SHong Zhang   for (i = 0; i < am; i++) {
1618d6ab1dc0SHong Zhang     anz = ai[i + 1] - ai[i];
1619d6ab1dc0SHong Zhang     adj = aj + ai[i];
1620d6ab1dc0SHong Zhang     ada = a_loc->a + ai[i];
1621d6ab1dc0SHong Zhang 
1622d6ab1dc0SHong Zhang     /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */
1623d6ab1dc0SHong Zhang     /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */
1624d6ab1dc0SHong Zhang     pnz = po->i[i + 1] - po->i[i];
1625d6ab1dc0SHong Zhang     poJ = po->j + po->i[i];
1626d6ab1dc0SHong Zhang     pA  = po->a + po->i[i];
1627d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1628d6ab1dc0SHong Zhang       row = poJ[j];
1629d6ab1dc0SHong Zhang       cj  = coj + coi[row];
1630d6ab1dc0SHong Zhang       ca  = coa + coi[row];
1631e745005bSHong Zhang       /* perform sparse axpy */
1632e745005bSHong Zhang       nexta  = 0;
1633d6ab1dc0SHong Zhang       valtmp = pA[j];
1634e745005bSHong Zhang       for (k = 0; nexta < anz; k++) {
1635e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1636e745005bSHong Zhang           ca[k] += valtmp * ada[nexta];
1637e745005bSHong Zhang           nexta++;
1638d6ab1dc0SHong Zhang         }
1639e745005bSHong Zhang       }
16409566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * anz));
1641d6ab1dc0SHong Zhang     }
1642d6ab1dc0SHong Zhang 
1643d6ab1dc0SHong Zhang     /* put the value into Cd (diagonal part) */
1644d6ab1dc0SHong Zhang     pnz = pd->i[i + 1] - pd->i[i];
1645d6ab1dc0SHong Zhang     pdJ = pd->j + pd->i[i];
1646d6ab1dc0SHong Zhang     pA  = pd->a + pd->i[i];
1647d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1648d6ab1dc0SHong Zhang       row = pdJ[j];
1649d6ab1dc0SHong Zhang       cj  = bj + bi[row];
1650d6ab1dc0SHong Zhang       ca  = ba + bi[row];
1651e745005bSHong Zhang       /* perform sparse axpy */
1652e745005bSHong Zhang       nexta  = 0;
1653d6ab1dc0SHong Zhang       valtmp = pA[j];
1654e745005bSHong Zhang       for (k = 0; nexta < anz; k++) {
1655e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1656e745005bSHong Zhang           ca[k] += valtmp * ada[nexta];
1657e745005bSHong Zhang           nexta++;
1658d6ab1dc0SHong Zhang         }
1659e745005bSHong Zhang       }
16609566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * anz));
1661d6ab1dc0SHong Zhang     }
1662d6ab1dc0SHong Zhang   }
1663d6ab1dc0SHong Zhang 
1664d6ab1dc0SHong Zhang   /* 3) send and recv matrix values coa */
1665d6ab1dc0SHong Zhang   buf_ri = merge->buf_ri;
1666d6ab1dc0SHong Zhang   buf_rj = merge->buf_rj;
1667d6ab1dc0SHong Zhang   len_s  = merge->len_s;
16689566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &taga));
16699566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
1670d6ab1dc0SHong Zhang 
167184648c2dSPierre Jolivet   PetscCall(PetscMalloc2(merge->nsend, &s_waits, size, &status));
1672d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1673d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1674d6ab1dc0SHong Zhang     i = merge->owners_co[proc];
16756497c311SBarry Smith     PetscCallMPI(MPIU_Isend(coa + coi[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
1676d6ab1dc0SHong Zhang     k++;
1677d6ab1dc0SHong Zhang   }
16789566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
16799566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
1680d6ab1dc0SHong Zhang 
16819566063dSJacob Faibussowitsch   PetscCall(PetscFree2(s_waits, status));
16829566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
16839566063dSJacob Faibussowitsch   PetscCall(PetscFree(coa));
1684d6ab1dc0SHong Zhang 
1685d6ab1dc0SHong Zhang   /* 4) insert local Cseq and received values into Cmpi */
16869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1687d6ab1dc0SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
1688e745005bSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1689f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
1690d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
1691a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1692d6ab1dc0SHong Zhang   }
1693d6ab1dc0SHong Zhang 
1694d6ab1dc0SHong Zhang   for (i = 0; i < cm; i++) {
1695d6ab1dc0SHong Zhang     row  = owners[rank] + i; /* global row index of C_seq */
1696d6ab1dc0SHong Zhang     bj_i = bj + bi[i];       /* col indices of the i-th row of C */
1697d6ab1dc0SHong Zhang     ba_i = ba + bi[i];
1698d6ab1dc0SHong Zhang     bnz  = bi[i + 1] - bi[i];
1699d6ab1dc0SHong Zhang     /* add received vals into ba */
1700d6ab1dc0SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
1701d6ab1dc0SHong Zhang       /* i-th row */
1702d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {
1703d6ab1dc0SHong Zhang         cnz    = *(nextci[k] + 1) - *nextci[k];
1704f4f49eeaSPierre Jolivet         cj     = buf_rj[k] + *nextci[k];
1705f4f49eeaSPierre Jolivet         ca     = abuf_r[k] + *nextci[k];
1706d6ab1dc0SHong Zhang         nextcj = 0;
1707d6ab1dc0SHong Zhang         for (j = 0; nextcj < cnz; j++) {
1708d6ab1dc0SHong Zhang           if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */
1709d6ab1dc0SHong Zhang             ba_i[j] += ca[nextcj++];
1710d6ab1dc0SHong Zhang           }
1711d6ab1dc0SHong Zhang         }
17129371c9d4SSatish Balay         nextrow[k]++;
17139371c9d4SSatish Balay         nextci[k]++;
17149566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * cnz));
1715d6ab1dc0SHong Zhang       }
1716d6ab1dc0SHong Zhang     }
17179566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, bnz, bj_i, ba_i, INSERT_VALUES));
1718d6ab1dc0SHong Zhang   }
17199566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
17209566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
1721d6ab1dc0SHong Zhang 
17229566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba));
17239566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
17249566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
17259566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
17263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1727d6ab1dc0SHong Zhang }
1728d6ab1dc0SHong Zhang 
1729d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P, Mat A, PetscReal fill, Mat C)
1730d71ae5a4SJacob Faibussowitsch {
1731b419842dSStefano Zampini   Mat                  A_loc;
1732cc1eb50dSBarry Smith   MatProductCtx_APMPI *ap;
17330298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
17346718818eSStefano Zampini   Mat_MPIAIJ          *p = (Mat_MPIAIJ *)P->data, *a = (Mat_MPIAIJ *)A->data;
1735d6ab1dc0SHong Zhang   PetscInt            *pdti, *pdtj, *poti, *potj, *ptJ;
1736d6ab1dc0SHong Zhang   PetscInt             nnz;
1737d6ab1dc0SHong Zhang   PetscInt            *lnk, *owners_co, *coi, *coj, i, k, pnz, row;
1738d6ab1dc0SHong Zhang   PetscInt             am = A->rmap->n, pn = P->cmap->n;
1739ce94432eSBarry Smith   MPI_Comm             comm;
17406497c311SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_si, *len_s, *len_ri, proc;
1741d6ab1dc0SHong Zhang   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
17426497c311SBarry Smith   PetscInt             len, *dnz, *onz, *owners;
1743d6ab1dc0SHong Zhang   PetscInt             nzi, *bi, *bj;
1744d6ab1dc0SHong Zhang   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1745d6ab1dc0SHong Zhang   MPI_Request         *swaits, *rwaits;
1746d6ab1dc0SHong Zhang   MPI_Status          *sstatus, rstatus;
1747cc1eb50dSBarry Smith   MatMergeSeqsToMPI   *merge;
1748d6ab1dc0SHong Zhang   PetscInt            *ai, *aj, *Jptr, anz, *prmap = p->garray, pon, nspacedouble = 0, j;
1749d6ab1dc0SHong Zhang   PetscReal            afill  = 1.0, afill_tmp;
1750eec179cfSJacob Faibussowitsch   PetscInt             rstart = P->cmap->rstart, rmax, Armax;
1751b419842dSStefano Zampini   Mat_SeqAIJ          *a_loc;
1752eec179cfSJacob Faibussowitsch   PetscHMapI           ta;
1753b92f168fSBarry Smith   MatType              mtype;
1754d6ab1dc0SHong Zhang 
1755d6ab1dc0SHong Zhang   PetscFunctionBegin;
17569566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1757d6ab1dc0SHong Zhang   /* check if matrix local sizes are compatible */
17589371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart,
17599371c9d4SSatish Balay              A->rmap->rend, P->rmap->rstart, P->rmap->rend);
1760d6ab1dc0SHong Zhang 
17619566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
17629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1763d6ab1dc0SHong Zhang 
1764cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
17651cdffd5eSHong Zhang   PetscCall(PetscNew(&ap));
1766d6ab1dc0SHong Zhang 
1767d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
17689566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &A_loc));
17692205254eSKarl Rupp 
17701cdffd5eSHong Zhang   ap->A_loc = A_loc;
177157508eceSPierre Jolivet   a_loc     = (Mat_SeqAIJ *)A_loc->data;
1772d6ab1dc0SHong Zhang   ai        = a_loc->i;
1773d6ab1dc0SHong Zhang   aj        = a_loc->j;
1774d6ab1dc0SHong Zhang 
1775d6ab1dc0SHong Zhang   /* determine symbolic Co=(p->B)^T*A - send to others */
17769566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
17779566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
1778d6ab1dc0SHong Zhang   pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors
1779d6ab1dc0SHong Zhang                          >= (num of nonzero rows of C_seq) - pn */
17809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pon + 1, &coi));
1781d6ab1dc0SHong Zhang   coi[0] = 0;
1782d6ab1dc0SHong Zhang 
1783d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */
1784f91af8c7SBarry Smith   nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(poti[pon], ai[am]));
17859566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1786d6ab1dc0SHong Zhang   current_space = free_space;
178719f0e57aSHong Zhang 
1788d6ab1dc0SHong Zhang   /* create and initialize a linked list */
1789eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(A->cmap->n + a->B->cmap->N, &ta));
17904b38b95cSHong Zhang   MatRowMergeMax_SeqAIJ(a_loc, am, ta);
1791eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Armax));
179233ba5e2fSHong Zhang 
17939566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1794d6ab1dc0SHong Zhang 
1795d6ab1dc0SHong Zhang   for (i = 0; i < pon; i++) {
1796d6ab1dc0SHong Zhang     pnz = poti[i + 1] - poti[i];
1797d6ab1dc0SHong Zhang     ptJ = potj + poti[i];
1798d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1799d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of A_loc == col of Pot */
1800d6ab1dc0SHong Zhang       anz  = ai[row + 1] - ai[row];
1801d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1802d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
18039566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1804d6ab1dc0SHong Zhang     }
1805d6ab1dc0SHong Zhang     nnz = lnk[0];
1806d6ab1dc0SHong Zhang 
1807d6ab1dc0SHong Zhang     /* If free space is not available, double the total space in the list */
1808d6ab1dc0SHong Zhang     if (current_space->local_remaining < nnz) {
18099566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), &current_space));
1810d6ab1dc0SHong Zhang       nspacedouble++;
1811d6ab1dc0SHong Zhang     }
1812d6ab1dc0SHong Zhang 
1813d6ab1dc0SHong Zhang     /* Copy data into free space, and zero out denserows */
18149566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
18152205254eSKarl Rupp 
1816d6ab1dc0SHong Zhang     current_space->array += nnz;
1817d6ab1dc0SHong Zhang     current_space->local_used += nnz;
1818d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
18192205254eSKarl Rupp 
1820d6ab1dc0SHong Zhang     coi[i + 1] = coi[i] + nnz;
1821d6ab1dc0SHong Zhang   }
1822d6ab1dc0SHong Zhang 
182384648c2dSPierre Jolivet   PetscCall(PetscMalloc1(coi[pon], &coj));
18249566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, coj));
18259566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */
18262205254eSKarl Rupp 
1827118727c9SMark F. Adams   afill_tmp = (PetscReal)coi[pon] / (poti[pon] + ai[am] + 1);
1828d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
1829d6ab1dc0SHong Zhang 
1830d6ab1dc0SHong Zhang   /* send j-array (coj) of Co to other processors */
1831d6ab1dc0SHong Zhang   /* determine row ownership */
18329566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
18339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
18342205254eSKarl Rupp 
1835d6ab1dc0SHong Zhang   merge->rowmap->n  = pn;
1836d6ab1dc0SHong Zhang   merge->rowmap->bs = 1;
18372205254eSKarl Rupp 
18389566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
1839d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
1840d6ab1dc0SHong Zhang 
1841d6ab1dc0SHong Zhang   /* determine the number of messages to send, their lengths */
18429566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size, &len_si));
18439566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size, &merge->len_s));
18442205254eSKarl Rupp 
1845d6ab1dc0SHong Zhang   len_s        = merge->len_s;
1846d6ab1dc0SHong Zhang   merge->nsend = 0;
1847d6ab1dc0SHong Zhang 
184884648c2dSPierre Jolivet   PetscCall(PetscMalloc1(size + 1, &owners_co));
1849d6ab1dc0SHong Zhang 
1850d6ab1dc0SHong Zhang   proc = 0;
1851d6ab1dc0SHong Zhang   for (i = 0; i < pon; i++) {
1852d6ab1dc0SHong Zhang     while (prmap[i] >= owners[proc + 1]) proc++;
1853d6ab1dc0SHong Zhang     len_si[proc]++; /* num of rows in Co to be sent to [proc] */
1854d6ab1dc0SHong Zhang     len_s[proc] += coi[i + 1] - coi[i];
1855d6ab1dc0SHong Zhang   }
1856d6ab1dc0SHong Zhang 
1857d6ab1dc0SHong Zhang   len          = 0; /* max length of buf_si[] */
1858d6ab1dc0SHong Zhang   owners_co[0] = 0;
1859d6ab1dc0SHong Zhang   for (proc = 0; proc < size; proc++) {
1860d6ab1dc0SHong Zhang     owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1861216f1e5cSPierre Jolivet     if (len_s[proc]) {
1862d6ab1dc0SHong Zhang       merge->nsend++;
1863d6ab1dc0SHong Zhang       len_si[proc] = 2 * (len_si[proc] + 1);
1864d6ab1dc0SHong Zhang       len += len_si[proc];
1865d6ab1dc0SHong Zhang     }
1866d6ab1dc0SHong Zhang   }
1867d6ab1dc0SHong Zhang 
1868d6ab1dc0SHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
18699566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
18709566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
1871d6ab1dc0SHong Zhang 
1872d6ab1dc0SHong Zhang   /* post the Irecv and Isend of coj */
18739566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
18749566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rwaits));
187584648c2dSPierre Jolivet   PetscCall(PetscMalloc1(merge->nsend, &swaits));
1876d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1877d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1878d6ab1dc0SHong Zhang     i = owners_co[proc];
18796497c311SBarry Smith     PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1880d6ab1dc0SHong Zhang     k++;
1881d6ab1dc0SHong Zhang   }
1882d6ab1dc0SHong Zhang 
1883d6ab1dc0SHong Zhang   /* receives and sends of coj are complete */
18849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &sstatus));
1885d6ab1dc0SHong Zhang   for (i = 0; i < merge->nrecv; i++) {
1886ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
18879566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1888d6ab1dc0SHong Zhang   }
18899566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
18909566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
1891d6ab1dc0SHong Zhang 
18920acc65b4SHong Zhang   /* add received column indices into table to update Armax */
1893c4762a1bSJed Brown   /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */
18940acc65b4SHong Zhang   for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
18950acc65b4SHong Zhang     Jptr = buf_rj[k];
1896c76ffc5fSJacob Faibussowitsch     for (j = 0; j < merge->len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1));
18970acc65b4SHong Zhang   }
1898eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Armax));
18990acc65b4SHong Zhang 
1900d6ab1dc0SHong Zhang   /* send and recv coi */
19019566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
19029566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &rwaits));
190384648c2dSPierre Jolivet   PetscCall(PetscMalloc1(len, &buf_s));
1904d6ab1dc0SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1905d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1906d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1907d6ab1dc0SHong Zhang     /* form outgoing message for i-structure:
1908d6ab1dc0SHong Zhang          buf_si[0]:                 nrows to be sent
1909d6ab1dc0SHong Zhang                [1:nrows]:           row index (global)
1910d6ab1dc0SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1911d6ab1dc0SHong Zhang     */
1912d6ab1dc0SHong Zhang     nrows       = len_si[proc] / 2 - 1;
1913d6ab1dc0SHong Zhang     buf_si_i    = buf_si + nrows + 1;
1914d6ab1dc0SHong Zhang     buf_si[0]   = nrows;
1915d6ab1dc0SHong Zhang     buf_si_i[0] = 0;
1916d6ab1dc0SHong Zhang     nrows       = 0;
1917d6ab1dc0SHong Zhang     for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1918d6ab1dc0SHong Zhang       nzi                 = coi[i + 1] - coi[i];
1919d6ab1dc0SHong Zhang       buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi;   /* i-structure */
1920d6ab1dc0SHong Zhang       buf_si[nrows + 1]   = prmap[i] - owners[proc]; /* local row index */
1921d6ab1dc0SHong Zhang       nrows++;
1922d6ab1dc0SHong Zhang     }
19236497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1924d6ab1dc0SHong Zhang     k++;
1925d6ab1dc0SHong Zhang     buf_si += len_si[proc];
1926d6ab1dc0SHong Zhang   }
1927d6ab1dc0SHong Zhang   i = merge->nrecv;
1928d6ab1dc0SHong Zhang   while (i--) {
1929ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
19309566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1931d6ab1dc0SHong Zhang   }
19329566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19339566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
19349566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
19359566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
19369566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
19379566063dSJacob Faibussowitsch   PetscCall(PetscFree(sstatus));
19389566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1939d6ab1dc0SHong Zhang 
1940d6ab1dc0SHong Zhang   /* compute the local portion of C (mpi mat) */
1941d6ab1dc0SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
19429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pn + 1, &bi));
1943d6ab1dc0SHong Zhang   bi[0] = 0;
1944d6ab1dc0SHong Zhang 
1945d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(P) + nnz(AP)) */
1946f91af8c7SBarry Smith   nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(pdti[pn], PetscIntSumTruncate(poti[pon], ai[am])));
19479566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1948d6ab1dc0SHong Zhang   current_space = free_space;
1949d6ab1dc0SHong Zhang 
19509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1951d6ab1dc0SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
1952d6ab1dc0SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1953d6ab1dc0SHong Zhang     nrows       = *buf_ri_k[k];
1954d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
19552d4ee042Sprj-     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure  */
1956d6ab1dc0SHong Zhang   }
1957d6ab1dc0SHong Zhang 
19589566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1959d0609cedSBarry Smith   MatPreallocateBegin(comm, pn, A->cmap->n, dnz, onz);
1960d6ab1dc0SHong Zhang   rmax = 0;
1961d6ab1dc0SHong Zhang   for (i = 0; i < pn; i++) {
1962d6ab1dc0SHong Zhang     /* add pdt[i,:]*AP into lnk */
1963d6ab1dc0SHong Zhang     pnz = pdti[i + 1] - pdti[i];
1964d6ab1dc0SHong Zhang     ptJ = pdtj + pdti[i];
1965d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1966d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of AP == col of Pt */
1967d6ab1dc0SHong Zhang       anz  = ai[row + 1] - ai[row];
1968d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1969d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
19709566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1971d6ab1dc0SHong Zhang     }
1972d6ab1dc0SHong Zhang 
1973d6ab1dc0SHong Zhang     /* add received col data into lnk */
1974d6ab1dc0SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
1975d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
1976d6ab1dc0SHong Zhang         nzi  = *(nextci[k] + 1) - *nextci[k];
1977d6ab1dc0SHong Zhang         Jptr = buf_rj[k] + *nextci[k];
19789566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted_Scalable(nzi, Jptr, lnk));
19799371c9d4SSatish Balay         nextrow[k]++;
19809371c9d4SSatish Balay         nextci[k]++;
1981d6ab1dc0SHong Zhang       }
1982d6ab1dc0SHong Zhang     }
19838c78258cSHong Zhang 
19848c78258cSHong Zhang     /* add missing diagonal entry */
19858c78258cSHong Zhang     if (C->force_diagonals) {
19868c78258cSHong Zhang       k = i + owners[rank]; /* column index */
19879566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1, &k, lnk));
19888c78258cSHong Zhang     }
19898c78258cSHong Zhang 
1990d6ab1dc0SHong Zhang     nnz = lnk[0];
1991d6ab1dc0SHong Zhang 
1992d6ab1dc0SHong Zhang     /* if free space is not available, make more free space */
1993d6ab1dc0SHong Zhang     if (current_space->local_remaining < nnz) {
19949566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), &current_space));
1995d6ab1dc0SHong Zhang       nspacedouble++;
1996d6ab1dc0SHong Zhang     }
1997d6ab1dc0SHong Zhang     /* copy data into free space, then initialize lnk */
19989566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
19999566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], nnz, current_space->array, dnz, onz));
20002205254eSKarl Rupp 
2001d6ab1dc0SHong Zhang     current_space->array += nnz;
2002d6ab1dc0SHong Zhang     current_space->local_used += nnz;
2003d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
20042205254eSKarl Rupp 
2005d6ab1dc0SHong Zhang     bi[i + 1] = bi[i] + nnz;
2006d6ab1dc0SHong Zhang     if (nnz > rmax) rmax = nnz;
2007d6ab1dc0SHong Zhang   }
20089566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
2009d6ab1dc0SHong Zhang 
201084648c2dSPierre Jolivet   PetscCall(PetscMalloc1(bi[pn], &bj));
20119566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
2012118727c9SMark F. Adams   afill_tmp = (PetscReal)bi[pn] / (pdti[pn] + poti[pon] + ai[am] + 1);
2013d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
20149566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
2015eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
20169566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
20179566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
2018d6ab1dc0SHong Zhang 
20194222ddf1SHong Zhang   /* create symbolic parallel matrix C - why cannot be assembled in Numeric part   */
20209566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, pn, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE));
202158b7e2c1SStefano Zampini   PetscCall(MatSetBlockSizes(C, P->cmap->bs, A->cmap->bs));
20229566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
20239566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
20249566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
2025d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
20269566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(C, 1));
20279566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
2028d6ab1dc0SHong Zhang   for (i = 0; i < pn; i++) {
2029d6ab1dc0SHong Zhang     row  = i + rstart;
2030d6ab1dc0SHong Zhang     nnz  = bi[i + 1] - bi[i];
2031d6ab1dc0SHong Zhang     Jptr = bj + bi[i];
20329566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, nnz, Jptr, NULL, INSERT_VALUES));
2033d6ab1dc0SHong Zhang   }
20349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
20359566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
20369566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
2037d6ab1dc0SHong Zhang   merge->bi        = bi;
2038d6ab1dc0SHong Zhang   merge->bj        = bj;
2039d6ab1dc0SHong Zhang   merge->coi       = coi;
2040d6ab1dc0SHong Zhang   merge->coj       = coj;
2041d6ab1dc0SHong Zhang   merge->buf_ri    = buf_ri;
2042d6ab1dc0SHong Zhang   merge->buf_rj    = buf_rj;
2043d6ab1dc0SHong Zhang   merge->owners_co = owners_co;
2044d6ab1dc0SHong Zhang 
20454222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
20461cdffd5eSHong Zhang   C->product->data    = ap;
2047cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP;
20481cdffd5eSHong Zhang   ap->merge           = merge;
2049a560ef98SHong Zhang 
20504222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ;
2051f96d37fcSHong Zhang 
2052f96d37fcSHong Zhang #if defined(PETSC_USE_INFO)
2053f96d37fcSHong Zhang   if (bi[pn] != 0) {
20549566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
20559566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n", (double)afill));
2056f96d37fcSHong Zhang   } else {
20579566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
2058f96d37fcSHong Zhang   }
2059f96d37fcSHong Zhang #endif
20603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2061f96d37fcSHong Zhang }
20624222ddf1SHong Zhang 
2063d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C)
2064d71ae5a4SJacob Faibussowitsch {
20654222ddf1SHong Zhang   Mat_Product *product = C->product;
20664222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
20674222ddf1SHong Zhang   PetscReal    fill = product->fill;
20684222ddf1SHong Zhang   PetscBool    flg;
20694222ddf1SHong Zhang 
20704222ddf1SHong Zhang   PetscFunctionBegin;
20714222ddf1SHong Zhang   /* scalable */
20729566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "scalable", &flg));
20734222ddf1SHong Zhang   if (flg) {
20749566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
20754222ddf1SHong Zhang     goto next;
20764222ddf1SHong Zhang   }
20774222ddf1SHong Zhang 
20784222ddf1SHong Zhang   /* nonscalable */
20799566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "nonscalable", &flg));
20804222ddf1SHong Zhang   if (flg) {
20819566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
20824222ddf1SHong Zhang     goto next;
20834222ddf1SHong Zhang   }
20844222ddf1SHong Zhang 
20854222ddf1SHong Zhang   /* matmatmult */
20869566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "at*b", &flg));
20874222ddf1SHong Zhang   if (flg) {
20884222ddf1SHong Zhang     Mat                  At;
2089cc1eb50dSBarry Smith     MatProductCtx_APMPI *ptap;
20904222ddf1SHong Zhang 
20919566063dSJacob Faibussowitsch     PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
20929566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At, B, fill, C));
2093cc1eb50dSBarry Smith     ptap = (MatProductCtx_APMPI *)C->product->data;
20944222ddf1SHong Zhang     if (ptap) {
20954222ddf1SHong Zhang       ptap->Pt            = At;
2096cc1eb50dSBarry Smith       C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP;
20974222ddf1SHong Zhang     }
20984222ddf1SHong Zhang     C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult;
20994222ddf1SHong Zhang     goto next;
21004222ddf1SHong Zhang   }
21014222ddf1SHong Zhang 
21024e84afc0SStefano Zampini   /* backend general code */
21039566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "backend", &flg));
21044e84afc0SStefano Zampini   if (flg) {
21059566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
21063ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
21074e84afc0SStefano Zampini   }
21084e84afc0SStefano Zampini 
21094222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type is not supported");
21104222ddf1SHong Zhang 
21114222ddf1SHong Zhang next:
21124222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AtB;
21133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21144222ddf1SHong Zhang }
21154222ddf1SHong Zhang 
21164222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */
2117d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C)
2118d71ae5a4SJacob Faibussowitsch {
21194222ddf1SHong Zhang   Mat_Product *product = C->product;
21204222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
21214222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
21224e84afc0SStefano Zampini   const char *algTypes[5] = {"scalable", "nonscalable", "seqmpi", "backend", "hypre"};
21234e84afc0SStefano Zampini   PetscInt    nalg        = 5;
21244222ddf1SHong Zhang #else
21259371c9d4SSatish Balay   const char *algTypes[4] = {
21269371c9d4SSatish Balay     "scalable",
21279371c9d4SSatish Balay     "nonscalable",
21289371c9d4SSatish Balay     "seqmpi",
21299371c9d4SSatish Balay     "backend",
21309371c9d4SSatish Balay   };
21314e84afc0SStefano Zampini   PetscInt nalg = 4;
21324222ddf1SHong Zhang #endif
21334222ddf1SHong Zhang   PetscInt  alg = 1; /* set nonscalable algorithm as default */
21344222ddf1SHong Zhang   PetscBool flg;
21354222ddf1SHong Zhang   MPI_Comm  comm;
21364222ddf1SHong Zhang 
21374222ddf1SHong Zhang   PetscFunctionBegin;
21389566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
21394222ddf1SHong Zhang 
21404222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
21419566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
21424222ddf1SHong Zhang   if (flg) {
2143835f2295SStefano Zampini     PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
21444222ddf1SHong Zhang 
21454222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
21464222ddf1SHong Zhang     if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
21474222ddf1SHong Zhang       MatInfo   Ainfo, Binfo;
21484222ddf1SHong Zhang       PetscInt  nz_local;
21494222ddf1SHong Zhang       PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
21504222ddf1SHong Zhang 
21519566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
21529566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
21534222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
21544222ddf1SHong Zhang 
21554222ddf1SHong Zhang       if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
21565440e5dcSBarry Smith       PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
21574222ddf1SHong Zhang 
21584222ddf1SHong Zhang       if (alg_scalable) {
21594222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2160835f2295SStefano Zampini         PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
21619566063dSJacob Faibussowitsch         PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
21624222ddf1SHong Zhang       }
21634222ddf1SHong Zhang     }
21644222ddf1SHong Zhang   }
21654222ddf1SHong Zhang 
21664222ddf1SHong Zhang   /* Get runtime option */
21674222ddf1SHong Zhang   if (product->api_user) {
2168d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
21699566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2170d0609cedSBarry Smith     PetscOptionsEnd();
21714222ddf1SHong Zhang   } else {
2172d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
21739566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2174d0609cedSBarry Smith     PetscOptionsEnd();
21754222ddf1SHong Zhang   }
2176835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
21774222ddf1SHong Zhang 
21784222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ;
21793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21804222ddf1SHong Zhang }
21814222ddf1SHong Zhang 
2182d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C)
2183d71ae5a4SJacob Faibussowitsch {
21848a9c020eSBarry Smith   PetscFunctionBegin;
21858a9c020eSBarry Smith   PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
21868a9c020eSBarry Smith   C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ;
21873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21888a9c020eSBarry Smith }
21898a9c020eSBarry Smith 
21904222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */
2191d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C)
2192d71ae5a4SJacob Faibussowitsch {
21934222ddf1SHong Zhang   Mat_Product *product = C->product;
21944222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
21954e84afc0SStefano Zampini   const char  *algTypes[4] = {"scalable", "nonscalable", "at*b", "backend"};
21964e84afc0SStefano Zampini   PetscInt     nalg        = 4;
21974222ddf1SHong Zhang   PetscInt     alg         = 1; /* set default algorithm  */
21984222ddf1SHong Zhang   PetscBool    flg;
21994222ddf1SHong Zhang   MPI_Comm     comm;
22004222ddf1SHong Zhang 
22014222ddf1SHong Zhang   PetscFunctionBegin;
22024222ddf1SHong Zhang   /* Check matrix local sizes */
22039566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22049371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22059371c9d4SSatish Balay              A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
22064222ddf1SHong Zhang 
22074222ddf1SHong Zhang   /* Set default algorithm */
22089566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
2209835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22104222ddf1SHong Zhang 
22114222ddf1SHong Zhang   /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22124222ddf1SHong Zhang   if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
22134222ddf1SHong Zhang     MatInfo   Ainfo, Binfo;
22144222ddf1SHong Zhang     PetscInt  nz_local;
22154222ddf1SHong Zhang     PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
22164222ddf1SHong Zhang 
22179566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
22189566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
22194222ddf1SHong Zhang     nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22204222ddf1SHong Zhang 
22214222ddf1SHong Zhang     if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
22225440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
22234222ddf1SHong Zhang 
22244222ddf1SHong Zhang     if (alg_scalable) {
22254222ddf1SHong Zhang       alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2226835f2295SStefano Zampini       PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22279566063dSJacob Faibussowitsch       PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
22284222ddf1SHong Zhang     }
22294222ddf1SHong Zhang   }
22304222ddf1SHong Zhang 
22314222ddf1SHong Zhang   /* Get runtime option */
22324222ddf1SHong Zhang   if (product->api_user) {
2233d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat");
22349566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2235d0609cedSBarry Smith     PetscOptionsEnd();
22364222ddf1SHong Zhang   } else {
2237d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat");
22389566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2239d0609cedSBarry Smith     PetscOptionsEnd();
22404222ddf1SHong Zhang   }
2241835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22424222ddf1SHong Zhang 
22434222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ;
22443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
22454222ddf1SHong Zhang }
22464222ddf1SHong Zhang 
2247d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C)
2248d71ae5a4SJacob Faibussowitsch {
22494222ddf1SHong Zhang   Mat_Product *product = C->product;
22504222ddf1SHong Zhang   Mat          A = product->A, P = product->B;
22514222ddf1SHong Zhang   MPI_Comm     comm;
22524222ddf1SHong Zhang   PetscBool    flg;
22534222ddf1SHong Zhang   PetscInt     alg = 1; /* set default algorithm */
22544222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
22554e84afc0SStefano Zampini   const char *algTypes[5] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend"};
22564222ddf1SHong Zhang   PetscInt    nalg        = 5;
22574e84afc0SStefano Zampini #else
22584e84afc0SStefano Zampini   const char *algTypes[6] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend", "hypre"};
22594e84afc0SStefano Zampini   PetscInt    nalg        = 6;
22604222ddf1SHong Zhang #endif
22614222ddf1SHong Zhang   PetscInt pN = P->cmap->N;
22624222ddf1SHong Zhang 
22634222ddf1SHong Zhang   PetscFunctionBegin;
22644222ddf1SHong Zhang   /* Check matrix local sizes */
22659566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22669371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22679371c9d4SSatish Balay              A->rmap->rstart, A->rmap->rend, P->rmap->rstart, P->rmap->rend);
22689371c9d4SSatish Balay   PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22699371c9d4SSatish Balay              A->cmap->rstart, A->cmap->rend, P->rmap->rstart, P->rmap->rend);
22704222ddf1SHong Zhang 
22714222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
22729566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
22734222ddf1SHong Zhang   if (flg) {
2274835f2295SStefano Zampini     PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22754222ddf1SHong Zhang 
22764222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22774222ddf1SHong Zhang     if (pN > 100000) {
22784222ddf1SHong Zhang       MatInfo   Ainfo, Pinfo;
22794222ddf1SHong Zhang       PetscInt  nz_local;
22804222ddf1SHong Zhang       PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
22814222ddf1SHong Zhang 
22829566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
22839566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(P, MAT_LOCAL, &Pinfo));
22844222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated);
22854222ddf1SHong Zhang 
22864222ddf1SHong Zhang       if (pN > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
22875440e5dcSBarry Smith       PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
22884222ddf1SHong Zhang 
22894222ddf1SHong Zhang       if (alg_scalable) {
22904222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2291835f2295SStefano Zampini         PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22924222ddf1SHong Zhang       }
22934222ddf1SHong Zhang     }
22944222ddf1SHong Zhang   }
22954222ddf1SHong Zhang 
22964222ddf1SHong Zhang   /* Get runtime option */
22974222ddf1SHong Zhang   if (product->api_user) {
2298d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
22999566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2300d0609cedSBarry Smith     PetscOptionsEnd();
23014222ddf1SHong Zhang   } else {
2302d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
23039566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2304d0609cedSBarry Smith     PetscOptionsEnd();
23054222ddf1SHong Zhang   }
2306835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23074222ddf1SHong Zhang 
23084222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ;
23093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23104222ddf1SHong Zhang }
23114222ddf1SHong Zhang 
2312d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C)
2313d71ae5a4SJacob Faibussowitsch {
23144222ddf1SHong Zhang   Mat_Product *product = C->product;
23154222ddf1SHong Zhang   Mat          A = product->A, R = product->B;
23164222ddf1SHong Zhang 
23174222ddf1SHong Zhang   PetscFunctionBegin;
23184222ddf1SHong Zhang   /* Check matrix local sizes */
23199371c9d4SSatish Balay   PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->n,
23209371c9d4SSatish Balay              A->rmap->n, R->rmap->n, R->cmap->n);
23214222ddf1SHong Zhang 
23224222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ;
23233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23244222ddf1SHong Zhang }
23254222ddf1SHong Zhang 
23264222ddf1SHong Zhang /*
23274222ddf1SHong Zhang  Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm
23284222ddf1SHong Zhang */
2329d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C)
2330d71ae5a4SJacob Faibussowitsch {
23314222ddf1SHong Zhang   Mat_Product *product     = C->product;
23324222ddf1SHong Zhang   PetscBool    flg         = PETSC_FALSE;
23334222ddf1SHong Zhang   PetscInt     alg         = 1; /* default algorithm */
23344222ddf1SHong Zhang   const char  *algTypes[3] = {"scalable", "nonscalable", "seqmpi"};
23354222ddf1SHong Zhang   PetscInt     nalg        = 3;
23364222ddf1SHong Zhang 
23374222ddf1SHong Zhang   PetscFunctionBegin;
23384222ddf1SHong Zhang   /* Set default algorithm */
23399566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
2340835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23414222ddf1SHong Zhang 
23424222ddf1SHong Zhang   /* Get runtime option */
23434222ddf1SHong Zhang   if (product->api_user) {
2344d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat");
23459566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2346d0609cedSBarry Smith     PetscOptionsEnd();
23474222ddf1SHong Zhang   } else {
2348d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat");
23499566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg));
2350d0609cedSBarry Smith     PetscOptionsEnd();
23514222ddf1SHong Zhang   }
2352835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23534222ddf1SHong Zhang 
23544222ddf1SHong Zhang   C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ;
23554222ddf1SHong Zhang   C->ops->productsymbolic    = MatProductSymbolic_ABC;
23563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23574222ddf1SHong Zhang }
23584222ddf1SHong Zhang 
2359d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C)
2360d71ae5a4SJacob Faibussowitsch {
23614222ddf1SHong Zhang   Mat_Product *product = C->product;
23624222ddf1SHong Zhang 
23634222ddf1SHong Zhang   PetscFunctionBegin;
23644222ddf1SHong Zhang   switch (product->type) {
2365d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
2366d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
2367d71ae5a4SJacob Faibussowitsch     break;
2368d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABt:
2369d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C));
2370d71ae5a4SJacob Faibussowitsch     break;
2371d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
2372d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C));
2373d71ae5a4SJacob Faibussowitsch     break;
2374d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_PtAP:
2375d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C));
2376d71ae5a4SJacob Faibussowitsch     break;
2377d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_RARt:
2378d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C));
2379d71ae5a4SJacob Faibussowitsch     break;
2380d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABC:
2381d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C));
2382d71ae5a4SJacob Faibussowitsch     break;
2383d71ae5a4SJacob Faibussowitsch   default:
2384d71ae5a4SJacob Faibussowitsch     break;
23854222ddf1SHong Zhang   }
23863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23874222ddf1SHong Zhang }
2388