12499ec78SHong Zhang /* 22499ec78SHong Zhang Defines matrix-matrix product routines for pairs of MPIAIJ matrices 32499ec78SHong Zhang C = A * B 42499ec78SHong Zhang */ 5c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 6c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 7c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 8c6db04a5SJed Brown #include <petscbt.h> 9c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> 10af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 1197929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 121634b032SHong Zhang 135e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 144222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat); 155e5acdf2Sstefano_zampini #endif 165e5acdf2Sstefano_zampini 17d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C) 18d71ae5a4SJacob Faibussowitsch { 198a9c020eSBarry Smith Mat_Product *product = C->product; 208a9c020eSBarry Smith Mat B = product->B; 218a9c020eSBarry Smith 228a9c020eSBarry Smith PetscFunctionBegin; 238a9c020eSBarry Smith PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &product->B)); 248a9c020eSBarry Smith PetscCall(MatDestroy(&B)); 258a9c020eSBarry Smith PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C)); 263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278a9c020eSBarry Smith } 288a9c020eSBarry Smith 29d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C) 30d71ae5a4SJacob Faibussowitsch { 314222ddf1SHong Zhang Mat_Product *product = C->product; 324222ddf1SHong Zhang Mat A = product->A, B = product->B; 334222ddf1SHong Zhang MatProductAlgorithm alg = product->alg; 344222ddf1SHong Zhang PetscReal fill = product->fill; 355e68f438SHong Zhang PetscBool flg; 362499ec78SHong Zhang 372499ec78SHong Zhang PetscFunctionBegin; 384222ddf1SHong Zhang /* scalable */ 399566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "scalable", &flg)); 404222ddf1SHong Zhang if (flg) { 419566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C)); 423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 430fc8cf34SHong Zhang } 447d0a89b7SHong Zhang 454222ddf1SHong Zhang /* nonscalable */ 469566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "nonscalable", &flg)); 474222ddf1SHong Zhang if (flg) { 489566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C)); 493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 504222ddf1SHong Zhang } 514222ddf1SHong Zhang 524222ddf1SHong Zhang /* seqmpi */ 539566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "seqmpi", &flg)); 544222ddf1SHong Zhang if (flg) { 559566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A, B, fill, C)); 563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 574222ddf1SHong Zhang } 584222ddf1SHong Zhang 594e84afc0SStefano Zampini /* backend general code */ 609566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "backend", &flg)); 614e84afc0SStefano Zampini if (flg) { 629566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic_MPIAIJBACKEND(C)); 633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 644e84afc0SStefano Zampini } 654e84afc0SStefano Zampini 664222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 679566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "hypre", &flg)); 684222ddf1SHong Zhang if (flg) { 699566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C)); 703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 714222ddf1SHong Zhang } 724222ddf1SHong Zhang #endif 734222ddf1SHong Zhang SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Mat Product Algorithm is not supported"); 742499ec78SHong Zhang } 752499ec78SHong Zhang 76cc1eb50dSBarry Smith PetscErrorCode MatProductCtxDestroy_MPIAIJ_MatMatMult(void **data) 77d71ae5a4SJacob Faibussowitsch { 78cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap = *(MatProductCtx_APMPI **)data; 79598bc09dSHong Zhang 80598bc09dSHong Zhang PetscFunctionBegin; 819566063dSJacob Faibussowitsch PetscCall(PetscFree2(ptap->startsj_s, ptap->startsj_r)); 829566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->bufa)); 839566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->P_loc)); 849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->P_oth)); 859566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->Pt)); 869566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->api)); 879566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->apj)); 889566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->apa)); 899566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap)); 903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91598bc09dSHong Zhang } 92598bc09dSHong Zhang 93d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, Mat C) 94d71ae5a4SJacob Faibussowitsch { 954ae0847bSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data; 96f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data; 97f4f49eeaSPierre Jolivet Mat_SeqAIJ *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data; 98c12557a1SHong Zhang PetscScalar *cda = cd->a, *coa = co->a; 99598bc09dSHong Zhang Mat_SeqAIJ *p_loc, *p_oth; 1009ce11a7cSHong Zhang PetscScalar *apa, *ca; 101c12557a1SHong Zhang PetscInt cm = C->rmap->n; 102cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 103c12557a1SHong Zhang PetscInt *api, *apj, *apJ, i, k; 10429825010SHong Zhang PetscInt cstart = C->cmap->rstart; 105598bc09dSHong Zhang PetscInt cdnz, conz, k0, k1; 106ce496241SStefano Zampini const PetscScalar *dummy; 1079467f45fSHong Zhang MPI_Comm comm; 1089467f45fSHong Zhang PetscMPIInt size; 109598bc09dSHong Zhang 110598bc09dSHong Zhang PetscFunctionBegin; 1116718818eSStefano Zampini MatCheckProduct(C, 3); 112cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data; 11328b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 1149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 116aed4548fSBarry Smith PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()"); 11780da8df7SHong Zhang 11865e4b4d4SStefano Zampini /* flag CPU mask for C */ 11965e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 12065e4b4d4SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 12165e4b4d4SStefano Zampini if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU; 12265e4b4d4SStefano Zampini if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU; 12365e4b4d4SStefano Zampini #endif 12465e4b4d4SStefano Zampini 125a1a4e84aSHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */ 126a1a4e84aSHong Zhang /* update numerical values of P_oth and P_loc */ 1279566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 1289566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc)); 129598bc09dSHong Zhang 130598bc09dSHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 131598bc09dSHong Zhang /* get data from symbolic products */ 132f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 133c12557a1SHong Zhang p_oth = NULL; 134f4f49eeaSPierre Jolivet if (size > 1) p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 135598bc09dSHong Zhang 136598bc09dSHong Zhang /* get apa for storing dense row A[i,:]*P */ 137598bc09dSHong Zhang apa = ptap->apa; 138598bc09dSHong Zhang 13929825010SHong Zhang api = ptap->api; 14029825010SHong Zhang apj = ptap->apj; 141ce496241SStefano Zampini /* trigger copy to CPU */ 1429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy)); 1439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy)); 1449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy)); 1459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy)); 146598bc09dSHong Zhang for (i = 0; i < cm; i++) { 147c12557a1SHong Zhang /* compute apa = A[i,:]*P */ 148e497d3c8SHong Zhang AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa); 149598bc09dSHong Zhang 150598bc09dSHong Zhang /* set values in C */ 151216f1e5cSPierre Jolivet apJ = PetscSafePointerPlusOffset(apj, api[i]); 152598bc09dSHong Zhang cdnz = cd->i[i + 1] - cd->i[i]; 153598bc09dSHong Zhang conz = co->i[i + 1] - co->i[i]; 154598bc09dSHong Zhang 155910cf402Sprj- /* 1st off-diagonal part of C */ 1568e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 157598bc09dSHong Zhang k = 0; 158598bc09dSHong Zhang for (k0 = 0; k0 < conz; k0++) { 159598bc09dSHong Zhang if (apJ[k] >= cstart) break; 160598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 1615cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 162598bc09dSHong Zhang } 163598bc09dSHong Zhang 164598bc09dSHong Zhang /* diagonal part of C */ 1658e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(cda, cd->i[i]); 166598bc09dSHong Zhang for (k1 = 0; k1 < cdnz; k1++) { 167598bc09dSHong Zhang ca[k1] = apa[apJ[k]]; 1685cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 169598bc09dSHong Zhang } 170598bc09dSHong Zhang 171910cf402Sprj- /* 2nd off-diagonal part of C */ 1728e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 173598bc09dSHong Zhang for (; k0 < conz; k0++) { 174598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 1755cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 176598bc09dSHong Zhang } 177598bc09dSHong Zhang } 1789566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 1799566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 1803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 181598bc09dSHong Zhang } 182598bc09dSHong Zhang 183d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, PetscReal fill, Mat C) 184d71ae5a4SJacob Faibussowitsch { 185ce94432eSBarry Smith MPI_Comm comm; 1869467f45fSHong Zhang PetscMPIInt size; 187cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 1880298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 1896718818eSStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 190f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth; 1917dbaa2c6Sandi selinger PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz; 1924ae0847bSHong Zhang PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart; 193d14fa243SHong Zhang PetscInt *lnk, i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi; 1945cab4f04SHong Zhang PetscInt am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n; 195598bc09dSHong Zhang PetscBT lnkbt; 196bfcd1a73SHong Zhang PetscReal afill; 197b92f168fSBarry Smith MatType mtype; 198598bc09dSHong Zhang 199598bc09dSHong Zhang PetscFunctionBegin; 2006718818eSStefano Zampini MatCheckProduct(C, 4); 20128b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 2029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 2039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2049467f45fSHong Zhang 205cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */ 2069566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 207598bc09dSHong Zhang 208598bc09dSHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 2099566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 21019f0e57aSHong Zhang 211598bc09dSHong Zhang /* get P_loc by taking all local rows of P */ 2129566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 213598bc09dSHong Zhang 214f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 2159371c9d4SSatish Balay pi_loc = p_loc->i; 2169371c9d4SSatish Balay pj_loc = p_loc->j; 2179467f45fSHong Zhang if (size > 1) { 218f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 2199371c9d4SSatish Balay pi_oth = p_oth->i; 2209371c9d4SSatish Balay pj_oth = p_oth->j; 22120e3dc75SHong Zhang } else { 22220e3dc75SHong Zhang p_oth = NULL; 2239371c9d4SSatish Balay pi_oth = NULL; 2249371c9d4SSatish Balay pj_oth = NULL; 2259467f45fSHong Zhang } 226598bc09dSHong Zhang 227598bc09dSHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 22884648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &api)); 229a1a4e84aSHong Zhang ptap->api = api; 230598bc09dSHong Zhang api[0] = 0; 231598bc09dSHong Zhang 2325cab4f04SHong Zhang /* create and initialize a linked list */ 2339566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt)); 234598bc09dSHong Zhang 235bfcd1a73SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 2369566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space)); 237598bc09dSHong Zhang current_space = free_space; 238598bc09dSHong Zhang 239d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 240598bc09dSHong Zhang for (i = 0; i < am; i++) { 241598bc09dSHong Zhang /* diagonal portion of A */ 242598bc09dSHong Zhang nzi = adi[i + 1] - adi[i]; 243598bc09dSHong Zhang for (j = 0; j < nzi; j++) { 244598bc09dSHong Zhang row = *adj++; 245598bc09dSHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 246598bc09dSHong Zhang Jptr = pj_loc + pi_loc[row]; 247598bc09dSHong Zhang /* add non-zero cols of P into the sorted linked list lnk */ 2489566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt)); 249598bc09dSHong Zhang } 250598bc09dSHong Zhang /* off-diagonal portion of A */ 251598bc09dSHong Zhang nzi = aoi[i + 1] - aoi[i]; 252598bc09dSHong Zhang for (j = 0; j < nzi; j++) { 253598bc09dSHong Zhang row = *aoj++; 254598bc09dSHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 255598bc09dSHong Zhang Jptr = pj_oth + pi_oth[row]; 2569566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt)); 257598bc09dSHong Zhang } 2588c78258cSHong Zhang /* add possible missing diagonal entry */ 2598c78258cSHong Zhang if (C->force_diagonals) { 2608c78258cSHong Zhang j = i + rstart; /* column index */ 2619566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1, &j, lnk, lnkbt)); 2628c78258cSHong Zhang } 263598bc09dSHong Zhang 264d14fa243SHong Zhang apnz = lnk[0]; 265598bc09dSHong Zhang api[i + 1] = api[i] + apnz; 266598bc09dSHong Zhang 267598bc09dSHong Zhang /* if free space is not available, double the total space in the list */ 268598bc09dSHong Zhang if (current_space->local_remaining < apnz) { 2699566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), ¤t_space)); 270598bc09dSHong Zhang nspacedouble++; 271598bc09dSHong Zhang } 272598bc09dSHong Zhang 273598bc09dSHong Zhang /* Copy data into free space, then initialize lnk */ 2749566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(pN, apnz, current_space->array, lnk, lnkbt)); 2759566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz)); 2762205254eSKarl Rupp 277598bc09dSHong Zhang current_space->array += apnz; 278598bc09dSHong Zhang current_space->local_used += apnz; 279598bc09dSHong Zhang current_space->local_remaining -= apnz; 280598bc09dSHong Zhang } 281598bc09dSHong Zhang 282598bc09dSHong Zhang /* Allocate space for apj, initialize apj, and */ 283598bc09dSHong Zhang /* destroy list of free space and other temporary array(s) */ 28484648c2dSPierre Jolivet PetscCall(PetscMalloc1(api[am], &ptap->apj)); 285a1a4e84aSHong Zhang apj = ptap->apj; 2869566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj)); 2879566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 288598bc09dSHong Zhang 289f84c536bSHong Zhang /* malloc apa to store dense row A[i,:]*P */ 2909566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(pN, &ptap->apa)); 291f84c536bSHong Zhang 2924222ddf1SHong Zhang /* set and assemble symbolic parallel matrix C */ 2939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 2949566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 295a2f3521dSMark F. Adams 2969566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 2979566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 2989566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 299d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 30017f75172Sandi selinger 3019566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 302*799b351eSPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3039566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3049566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3059566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 306598bc09dSHong Zhang 3074222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 3084222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 309598bc09dSHong Zhang 3104222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 3116718818eSStefano Zampini C->product->data = ptap; 312cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult; 313598bc09dSHong Zhang 314bfcd1a73SHong Zhang /* set MatInfo */ 315118727c9SMark F. Adams afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 316bfcd1a73SHong Zhang if (afill < 1.0) afill = 1.0; 3174222ddf1SHong Zhang C->info.mallocs = nspacedouble; 3184222ddf1SHong Zhang C->info.fill_ratio_given = fill; 3194222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 320bfcd1a73SHong Zhang 321bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO) 322bfcd1a73SHong Zhang if (api[am]) { 3239566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 3249566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 325bfcd1a73SHong Zhang } else { 3269566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 327bfcd1a73SHong Zhang } 328bfcd1a73SHong Zhang #endif 3293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 330598bc09dSHong Zhang } 331598bc09dSHong Zhang 3326718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat); 3336718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat, Mat, Mat); 3346718818eSStefano Zampini 335d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C) 336d71ae5a4SJacob Faibussowitsch { 3374222ddf1SHong Zhang Mat_Product *product = C->product; 3384222ddf1SHong Zhang Mat A = product->A, B = product->B; 3399123193aSHong Zhang 3409123193aSHong Zhang PetscFunctionBegin; 3414222ddf1SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) 34298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 3434222ddf1SHong Zhang 3444222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense; 3454222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 3463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3479123193aSHong Zhang } 3482ef1f0ffSBarry Smith 349d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C) 350d71ae5a4SJacob Faibussowitsch { 3514222ddf1SHong Zhang Mat_Product *product = C->product; 3524222ddf1SHong Zhang Mat A = product->A, B = product->B; 3534222ddf1SHong Zhang 3544222ddf1SHong Zhang PetscFunctionBegin; 3554222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 35698921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 3574222ddf1SHong Zhang 3584222ddf1SHong Zhang C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense; 3594222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB; 3603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3614222ddf1SHong Zhang } 3624222ddf1SHong Zhang 363d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C) 364d71ae5a4SJacob Faibussowitsch { 3654222ddf1SHong Zhang Mat_Product *product = C->product; 3664222ddf1SHong Zhang 3674222ddf1SHong Zhang PetscFunctionBegin; 3684222ddf1SHong Zhang switch (product->type) { 369d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 370d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C)); 371d71ae5a4SJacob Faibussowitsch break; 372d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 373d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C)); 374d71ae5a4SJacob Faibussowitsch break; 375d71ae5a4SJacob Faibussowitsch default: 376d71ae5a4SJacob Faibussowitsch break; 3774222ddf1SHong Zhang } 3783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3794222ddf1SHong Zhang } 3809123193aSHong Zhang 3814324174eSBarry Smith typedef struct { 3825ea7661aSPierre Jolivet Mat workB, workB1; 3834324174eSBarry Smith MPI_Request *rwaits, *swaits; 38487753ddeSHong Zhang PetscInt nsends, nrecvs; 38587753ddeSHong Zhang MPI_Datatype *stype, *rtype; 3866718818eSStefano Zampini PetscInt blda; 3874324174eSBarry Smith } MPIAIJ_MPIDense; 3884324174eSBarry Smith 389cc1eb50dSBarry Smith static PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void **ctx) 390d71ae5a4SJacob Faibussowitsch { 391cc1eb50dSBarry Smith MPIAIJ_MPIDense *contents = *(MPIAIJ_MPIDense **)ctx; 39287753ddeSHong Zhang PetscInt i; 3934324174eSBarry Smith 3944324174eSBarry Smith PetscFunctionBegin; 3959566063dSJacob Faibussowitsch PetscCall(MatDestroy(&contents->workB)); 3969566063dSJacob Faibussowitsch PetscCall(MatDestroy(&contents->workB1)); 39748a46eb9SPierre Jolivet for (i = 0; i < contents->nsends; i++) PetscCallMPI(MPI_Type_free(&contents->stype[i])); 39848a46eb9SPierre Jolivet for (i = 0; i < contents->nrecvs; i++) PetscCallMPI(MPI_Type_free(&contents->rtype[i])); 3999566063dSJacob Faibussowitsch PetscCall(PetscFree4(contents->stype, contents->rtype, contents->rwaits, contents->swaits)); 4009566063dSJacob Faibussowitsch PetscCall(PetscFree(contents)); 4013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4024324174eSBarry Smith } 4034324174eSBarry Smith 404d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 405d71ae5a4SJacob Faibussowitsch { 406f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 4076497c311SBarry Smith PetscInt nz = aij->B->cmap->n, blda, m, M, n, N; 4084324174eSBarry Smith MPIAIJ_MPIDense *contents; 4094324174eSBarry Smith VecScatter ctx = aij->Mvctx; 4106497c311SBarry Smith PetscInt Am = A->rmap->n, Bm = B->rmap->n, BN = B->cmap->N, Bbn, Bbn1, bs, numBb; 41187753ddeSHong Zhang MPI_Comm comm; 41287753ddeSHong Zhang MPI_Datatype type1, *stype, *rtype; 41387753ddeSHong Zhang const PetscInt *sindices, *sstarts, *rstarts; 4146497c311SBarry Smith PetscMPIInt *disp, nsends, nrecvs, nrows_to, nrows_from; 4156718818eSStefano Zampini PetscBool cisdense; 4169123193aSHong Zhang 4179123193aSHong Zhang PetscFunctionBegin; 4186718818eSStefano Zampini MatCheckProduct(C, 4); 41928b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 4209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 4219566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)C, MATMPIDENSE, &cisdense)); 42248a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)B)->type_name)); 4239566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(C, &m, &n)); 4249566063dSJacob Faibussowitsch PetscCall(MatGetSize(C, &M, &N)); 42548a46eb9SPierre Jolivet if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) PetscCall(MatSetSizes(C, Am, B->cmap->n, A->rmap->N, BN)); 4269566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 4279566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 4289566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &blda)); 4299566063dSJacob Faibussowitsch PetscCall(PetscNew(&contents)); 4304324174eSBarry Smith 4319566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL)); 4329566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL)); 43387753ddeSHong Zhang 43487753ddeSHong Zhang /* Create column block of B and C for memory scalability when BN is too large */ 43587753ddeSHong Zhang /* Estimate Bbn, column size of Bb */ 43687753ddeSHong Zhang if (nz) { 43787753ddeSHong Zhang Bbn1 = 2 * Am * BN / nz; 438da7cbbe7SHong Zhang if (!Bbn1) Bbn1 = 1; 43987753ddeSHong Zhang } else Bbn1 = BN; 44087753ddeSHong Zhang 44158b7e2c1SStefano Zampini bs = B->cmap->bs; 44287753ddeSHong Zhang Bbn1 = Bbn1 / bs * bs; /* Bbn1 is a multiple of bs */ 44387753ddeSHong Zhang if (Bbn1 > BN) Bbn1 = BN; 444462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&Bbn1, &Bbn, 1, MPIU_INT, MPI_MAX, comm)); 44587753ddeSHong Zhang 44687753ddeSHong Zhang /* Enable runtime option for Bbn */ 447d0609cedSBarry Smith PetscOptionsBegin(comm, ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 4489566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-matmatmult_Bbn", "Number of columns in Bb", "MatMatMult", Bbn, &Bbn, NULL)); 449d0609cedSBarry Smith PetscOptionsEnd(); 4506718818eSStefano Zampini Bbn = PetscMin(Bbn, BN); 45187753ddeSHong Zhang 4526718818eSStefano Zampini if (Bbn > 0 && Bbn < BN) { 4535ea7661aSPierre Jolivet numBb = BN / Bbn; 4545ea7661aSPierre Jolivet Bbn1 = BN - numBb * Bbn; 4555ea7661aSPierre Jolivet } else numBb = 0; 45687753ddeSHong Zhang 4575ea7661aSPierre Jolivet if (numBb) { 4589566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n", BN, Bbn, numBb)); 4595ea7661aSPierre Jolivet if (Bbn1) { /* Create workB1 for the remaining columns */ 4609566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n", BN, Bbn1)); 46187753ddeSHong Zhang /* Create work matrix used to store off processor rows of B needed for local product */ 4629566063dSJacob Faibussowitsch PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn1, NULL, &contents->workB1)); 4635ea7661aSPierre Jolivet } else contents->workB1 = NULL; 46487753ddeSHong Zhang } 46587753ddeSHong Zhang 46687753ddeSHong Zhang /* Create work matrix used to store off processor rows of B needed for local product */ 4679566063dSJacob Faibussowitsch PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn, NULL, &contents->workB)); 46887753ddeSHong Zhang 46987753ddeSHong Zhang /* Use MPI derived data type to reduce memory required by the send/recv buffers */ 4709566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(nsends, &stype, nrecvs, &rtype, nrecvs, &contents->rwaits, nsends, &contents->swaits)); 47187753ddeSHong Zhang contents->stype = stype; 47287753ddeSHong Zhang contents->nsends = nsends; 47387753ddeSHong Zhang 47487753ddeSHong Zhang contents->rtype = rtype; 47587753ddeSHong Zhang contents->nrecvs = nrecvs; 4766718818eSStefano Zampini contents->blda = blda; 47787753ddeSHong Zhang 4789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bm + 1, &disp)); 4796497c311SBarry Smith for (PetscMPIInt i = 0; i < nsends; i++) { 4806497c311SBarry Smith PetscCall(PetscMPIIntCast(sstarts[i + 1] - sstarts[i], &nrows_to)); 4816497c311SBarry Smith for (PetscInt j = 0; j < nrows_to; j++) PetscCall(PetscMPIIntCast(sindices[sstarts[i] + j], &disp[j])); /* rowB to be sent */ 4829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_indexed_block(nrows_to, 1, disp, MPIU_SCALAR, &type1)); 4839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(type1, 0, blda * sizeof(PetscScalar), &stype[i])); 4849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&stype[i])); 4859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&type1)); 48687753ddeSHong Zhang } 48787753ddeSHong Zhang 4886497c311SBarry Smith for (PetscMPIInt i = 0; i < nrecvs; i++) { 48987753ddeSHong Zhang /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */ 4906497c311SBarry Smith PetscCall(PetscMPIIntCast(rstarts[i + 1] - rstarts[i], &nrows_from)); 49187753ddeSHong Zhang disp[0] = 0; 4929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_indexed_block(1, nrows_from, disp, MPIU_SCALAR, &type1)); 4939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(type1, 0, nz * sizeof(PetscScalar), &rtype[i])); 4949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&rtype[i])); 4959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&type1)); 49687753ddeSHong Zhang } 49787753ddeSHong Zhang 4989566063dSJacob Faibussowitsch PetscCall(PetscFree(disp)); 4999566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL)); 5009566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL)); 5019566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 5029566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 5039566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 5046718818eSStefano Zampini 5056718818eSStefano Zampini C->product->data = contents; 5066718818eSStefano Zampini C->product->destroy = MatMPIAIJ_MPIDenseDestroy; 5074222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense; 5083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5099123193aSHong Zhang } 5109123193aSHong Zhang 51193aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat, Mat, Mat, const PetscBool); 5129612af27SStefano Zampini 513f32d5d43SBarry Smith /* 5142636ff26SBarry Smith Performs an efficient scatter on the rows of B needed by this process; this is 5152636ff26SBarry Smith a modification of the VecScatterBegin_() routines. 51687753ddeSHong Zhang 5179612af27SStefano Zampini Input: If Bbidx = 0, uses B = Bb, else B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense() 518f32d5d43SBarry Smith */ 5199612af27SStefano Zampini 52066976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseScatter(Mat A, Mat B, PetscInt Bbidx, Mat C, Mat *outworkB) 521d71ae5a4SJacob Faibussowitsch { 522f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 5231683a169SBarry Smith const PetscScalar *b; 52487753ddeSHong Zhang PetscScalar *rvalues; 525f32d5d43SBarry Smith VecScatter ctx = aij->Mvctx; 52687753ddeSHong Zhang const PetscInt *sindices, *sstarts, *rstarts; 5273515ee7fSJunchao Zhang const PetscMPIInt *sprocs, *rprocs; 5286497c311SBarry Smith PetscMPIInt nsends, nrecvs; 529f32d5d43SBarry Smith MPI_Request *swaits, *rwaits; 530ce94432eSBarry Smith MPI_Comm comm; 5316497c311SBarry Smith PetscMPIInt tag = ((PetscObject)ctx)->tag, ncols, nrows, nsends_mpi, nrecvs_mpi; 5324324174eSBarry Smith MPIAIJ_MPIDense *contents; 5334324174eSBarry Smith Mat workB; 53487753ddeSHong Zhang MPI_Datatype *stype, *rtype; 5356718818eSStefano Zampini PetscInt blda; 536f32d5d43SBarry Smith 537f32d5d43SBarry Smith PetscFunctionBegin; 5386718818eSStefano Zampini MatCheckProduct(C, 4); 53928b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 5406497c311SBarry Smith PetscCall(PetscMPIIntCast(B->cmap->N, &ncols)); 5416497c311SBarry Smith PetscCall(PetscMPIIntCast(aij->B->cmap->n, &nrows)); 5426718818eSStefano Zampini contents = (MPIAIJ_MPIDense *)C->product->data; 5439566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL /*bs*/)); 5449566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL /*bs*/)); 5459566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends, &nsends_mpi)); 5469566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nrecvs, &nrecvs_mpi)); 547b45e3bf4SStefano Zampini if (Bbidx == 0) workB = *outworkB = contents->workB; 548b45e3bf4SStefano Zampini else workB = *outworkB = contents->workB1; 54908401ef6SPierre Jolivet PetscCheck(nrows == workB->rmap->n, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d", workB->cmap->n, nrows); 5503515ee7fSJunchao Zhang swaits = contents->swaits; 5513515ee7fSJunchao Zhang rwaits = contents->rwaits; 552f32d5d43SBarry Smith 5539566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &b)); 5549566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &blda)); 55508401ef6SPierre Jolivet PetscCheck(blda == contents->blda, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT, blda, contents->blda); 5569566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(workB, &rvalues)); 557f32d5d43SBarry Smith 55887753ddeSHong Zhang /* Post recv, use MPI derived data type to save memory */ 5599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 56087753ddeSHong Zhang rtype = contents->rtype; 5616497c311SBarry Smith for (PetscMPIInt i = 0; i < nrecvs; i++) PetscCallMPI(MPIU_Irecv(rvalues + (rstarts[i] - rstarts[0]), ncols, rtype[i], rprocs[i], tag, comm, rwaits + i)); 562f32d5d43SBarry Smith 56387753ddeSHong Zhang stype = contents->stype; 5646497c311SBarry Smith for (PetscMPIInt i = 0; i < nsends; i++) PetscCallMPI(MPIU_Isend(b, ncols, stype[i], sprocs[i], tag, comm, swaits + i)); 5652636ff26SBarry Smith 5669566063dSJacob Faibussowitsch if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi, rwaits, MPI_STATUSES_IGNORE)); 5679566063dSJacob Faibussowitsch if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi, swaits, MPI_STATUSES_IGNORE)); 568f32d5d43SBarry Smith 5699566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL)); 5709566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL)); 5719566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &b)); 5729566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(workB, &rvalues)); 5733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57487753ddeSHong Zhang } 575f32d5d43SBarry Smith 576d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A, Mat B, Mat C) 577d71ae5a4SJacob Faibussowitsch { 578f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 579f32d5d43SBarry Smith Mat_MPIDense *bdense = (Mat_MPIDense *)B->data; 580f32d5d43SBarry Smith Mat_MPIDense *cdense = (Mat_MPIDense *)C->data; 581f32d5d43SBarry Smith Mat workB; 58287753ddeSHong Zhang MPIAIJ_MPIDense *contents; 5839123193aSHong Zhang 5849123193aSHong Zhang PetscFunctionBegin; 5856718818eSStefano Zampini MatCheckProduct(C, 3); 58628b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 5876718818eSStefano Zampini contents = (MPIAIJ_MPIDense *)C->product->data; 588f32d5d43SBarry Smith /* diagonal block of A times all local rows of B */ 5895ea7661aSPierre Jolivet /* TODO: this calls a symbolic multiplication every time, which could be avoided */ 590fb842aefSJose E. Roman PetscCall(MatMatMult(aij->A, bdense->A, MAT_REUSE_MATRIX, PETSC_CURRENT, &cdense->A)); 5915ea7661aSPierre Jolivet if (contents->workB->cmap->n == B->cmap->N) { 59287753ddeSHong Zhang /* get off processor parts of B needed to complete C=A*B */ 5939566063dSJacob Faibussowitsch PetscCall(MatMPIDenseScatter(A, B, 0, C, &workB)); 594f32d5d43SBarry Smith 595f32d5d43SBarry Smith /* off-diagonal block of A times nonlocal rows of B */ 5969566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE)); 59787753ddeSHong Zhang } else { 5985ea7661aSPierre Jolivet Mat Bb, Cb; 5996497c311SBarry Smith PetscInt BN = B->cmap->N, n = contents->workB->cmap->n; 600664c1e85SStefano Zampini PetscBool ccpu; 60187753ddeSHong Zhang 60208401ef6SPierre Jolivet PetscCheck(n > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Column block size %" PetscInt_FMT " must be positive", n); 603664c1e85SStefano Zampini /* Prevent from unneeded copies back and forth from the GPU 604664c1e85SStefano Zampini when getting and restoring the submatrix 605664c1e85SStefano Zampini We need a proper GPU code for AIJ * dense in parallel */ 6069566063dSJacob Faibussowitsch PetscCall(MatBoundToCPU(C, &ccpu)); 6079566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(C, PETSC_TRUE)); 6086497c311SBarry Smith for (PetscInt i = 0; i < BN; i += n) { 609a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(B, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Bb)); 610a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(C, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Cb)); 61187753ddeSHong Zhang 6125ea7661aSPierre Jolivet /* get off processor parts of B needed to complete C=A*B */ 6139566063dSJacob Faibussowitsch PetscCall(MatMPIDenseScatter(A, Bb, (i + n) > BN, C, &workB)); 6145ea7661aSPierre Jolivet 6155ea7661aSPierre Jolivet /* off-diagonal block of A times nonlocal rows of B */ 6165ea7661aSPierre Jolivet cdense = (Mat_MPIDense *)Cb->data; 6179566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE)); 6189566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(B, &Bb)); 6199566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(C, &Cb)); 62087753ddeSHong Zhang } 6219566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(C, ccpu)); 62287753ddeSHong Zhang } 6233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6249123193aSHong Zhang } 625cf1a0672SHong Zhang 626d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A, Mat P, Mat C) 627d71ae5a4SJacob Faibussowitsch { 628cf1a0672SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data; 629f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data; 630f4f49eeaSPierre Jolivet Mat_SeqAIJ *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data; 631cf1a0672SHong Zhang PetscInt *adi = ad->i, *adj, *aoi = ao->i, *aoj; 632cf1a0672SHong Zhang PetscScalar *ada, *aoa, *cda = cd->a, *coa = co->a; 633cf1a0672SHong Zhang Mat_SeqAIJ *p_loc, *p_oth; 634cf1a0672SHong Zhang PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *pj; 63529825010SHong Zhang PetscScalar *pa_loc, *pa_oth, *pa, valtmp, *ca; 63629825010SHong Zhang PetscInt cm = C->rmap->n, anz, pnz; 637cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 63880da8df7SHong Zhang PetscScalar *apa_sparse; 639ce496241SStefano Zampini const PetscScalar *dummy; 640cf1a0672SHong Zhang PetscInt *api, *apj, *apJ, i, j, k, row; 64129825010SHong Zhang PetscInt cstart = C->cmap->rstart; 64229825010SHong Zhang PetscInt cdnz, conz, k0, k1, nextp; 643a7c7454dSHong Zhang MPI_Comm comm; 644a7c7454dSHong Zhang PetscMPIInt size; 6451634b032SHong Zhang 6461634b032SHong Zhang PetscFunctionBegin; 6476718818eSStefano Zampini MatCheckProduct(C, 3); 648cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data; 64928b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 6509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 6519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 652aed4548fSBarry Smith PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()"); 653a7c7454dSHong Zhang 65465e4b4d4SStefano Zampini /* flag CPU mask for C */ 65565e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 65665e4b4d4SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 65765e4b4d4SStefano Zampini if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU; 65865e4b4d4SStefano Zampini if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU; 65965e4b4d4SStefano Zampini #endif 66080da8df7SHong Zhang apa_sparse = ptap->apa; 66180da8df7SHong Zhang 662cf1a0672SHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */ 663cf1a0672SHong Zhang /* update numerical values of P_oth and P_loc */ 6649566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 6659566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc)); 666cf1a0672SHong Zhang 667cf1a0672SHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 668cf1a0672SHong Zhang /* get data from symbolic products */ 669f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 6709371c9d4SSatish Balay pi_loc = p_loc->i; 6719371c9d4SSatish Balay pj_loc = p_loc->j; 6729371c9d4SSatish Balay pa_loc = p_loc->a; 673a7c7454dSHong Zhang if (size > 1) { 674f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 6759371c9d4SSatish Balay pi_oth = p_oth->i; 6769371c9d4SSatish Balay pj_oth = p_oth->j; 6779371c9d4SSatish Balay pa_oth = p_oth->a; 67820e3dc75SHong Zhang } else { 6799371c9d4SSatish Balay p_oth = NULL; 6809371c9d4SSatish Balay pi_oth = NULL; 6819371c9d4SSatish Balay pj_oth = NULL; 6829371c9d4SSatish Balay pa_oth = NULL; 683a7c7454dSHong Zhang } 684cf1a0672SHong Zhang 685ce496241SStefano Zampini /* trigger copy to CPU */ 6869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy)); 6879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy)); 6889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy)); 6899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy)); 69029825010SHong Zhang api = ptap->api; 69129825010SHong Zhang apj = ptap->apj; 692cf1a0672SHong Zhang for (i = 0; i < cm; i++) { 69329825010SHong Zhang apJ = apj + api[i]; 69429825010SHong Zhang 695cf1a0672SHong Zhang /* diagonal portion of A */ 696cf1a0672SHong Zhang anz = adi[i + 1] - adi[i]; 697cf1a0672SHong Zhang adj = ad->j + adi[i]; 698cf1a0672SHong Zhang ada = ad->a + adi[i]; 699cf1a0672SHong Zhang for (j = 0; j < anz; j++) { 700cf1a0672SHong Zhang row = adj[j]; 701cf1a0672SHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 702cf1a0672SHong Zhang pj = pj_loc + pi_loc[row]; 703cf1a0672SHong Zhang pa = pa_loc + pi_loc[row]; 70429825010SHong Zhang /* perform sparse axpy */ 705cf1a0672SHong Zhang valtmp = ada[j]; 70629825010SHong Zhang nextp = 0; 70729825010SHong Zhang for (k = 0; nextp < pnz; k++) { 70829825010SHong Zhang if (apJ[k] == pj[nextp]) { /* column of AP == column of P */ 70929825010SHong Zhang apa_sparse[k] += valtmp * pa[nextp++]; 71029825010SHong Zhang } 7111634b032SHong Zhang } 7129566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * pnz)); 713cf1a0672SHong Zhang } 7141634b032SHong Zhang 715cf1a0672SHong Zhang /* off-diagonal portion of A */ 716cf1a0672SHong Zhang anz = aoi[i + 1] - aoi[i]; 7178e3a54c0SPierre Jolivet aoj = PetscSafePointerPlusOffset(ao->j, aoi[i]); 7188e3a54c0SPierre Jolivet aoa = PetscSafePointerPlusOffset(ao->a, aoi[i]); 719cf1a0672SHong Zhang for (j = 0; j < anz; j++) { 720cf1a0672SHong Zhang row = aoj[j]; 721cf1a0672SHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 722cf1a0672SHong Zhang pj = pj_oth + pi_oth[row]; 723cf1a0672SHong Zhang pa = pa_oth + pi_oth[row]; 72429825010SHong Zhang /* perform sparse axpy */ 725cf1a0672SHong Zhang valtmp = aoa[j]; 72629825010SHong Zhang nextp = 0; 72729825010SHong Zhang for (k = 0; nextp < pnz; k++) { 72829825010SHong Zhang if (apJ[k] == pj[nextp]) { /* column of AP == column of P */ 72929825010SHong Zhang apa_sparse[k] += valtmp * pa[nextp++]; 73029825010SHong Zhang } 731cf1a0672SHong Zhang } 7329566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * pnz)); 733cf1a0672SHong Zhang } 7341634b032SHong Zhang 735cf1a0672SHong Zhang /* set values in C */ 736cf1a0672SHong Zhang cdnz = cd->i[i + 1] - cd->i[i]; 737cf1a0672SHong Zhang conz = co->i[i + 1] - co->i[i]; 7381634b032SHong Zhang 739910cf402Sprj- /* 1st off-diagonal part of C */ 7408e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 741cf1a0672SHong Zhang k = 0; 742cf1a0672SHong Zhang for (k0 = 0; k0 < conz; k0++) { 743cf1a0672SHong Zhang if (apJ[k] >= cstart) break; 74429825010SHong Zhang ca[k0] = apa_sparse[k]; 74529825010SHong Zhang apa_sparse[k] = 0.0; 746cf1a0672SHong Zhang k++; 747cf1a0672SHong Zhang } 7481634b032SHong Zhang 749cf1a0672SHong Zhang /* diagonal part of C */ 750cf1a0672SHong Zhang ca = cda + cd->i[i]; 751cf1a0672SHong Zhang for (k1 = 0; k1 < cdnz; k1++) { 75229825010SHong Zhang ca[k1] = apa_sparse[k]; 75329825010SHong Zhang apa_sparse[k] = 0.0; 754cf1a0672SHong Zhang k++; 755cf1a0672SHong Zhang } 756cf1a0672SHong Zhang 757910cf402Sprj- /* 2nd off-diagonal part of C */ 7588e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 759cf1a0672SHong Zhang for (; k0 < conz; k0++) { 76029825010SHong Zhang ca[k0] = apa_sparse[k]; 76129825010SHong Zhang apa_sparse[k] = 0.0; 762cf1a0672SHong Zhang k++; 763cf1a0672SHong Zhang } 764cf1a0672SHong Zhang } 7659566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 7669566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 7673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 768cf1a0672SHong Zhang } 769cf1a0672SHong Zhang 7700fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */ 771d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A, Mat P, PetscReal fill, Mat C) 772d71ae5a4SJacob Faibussowitsch { 773ce94432eSBarry Smith MPI_Comm comm; 774a7c7454dSHong Zhang PetscMPIInt size; 775cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 7760298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 7776718818eSStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 778f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth; 7797dbaa2c6Sandi selinger PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz; 780cf1a0672SHong Zhang PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart; 7818c78258cSHong Zhang PetscInt i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi, *lnk, apnz_max = 1; 782e5ab8c0aSKarl Rupp PetscInt am = A->rmap->n, pn = P->cmap->n, pm = P->rmap->n, lsize = pn + 20; 783cf1a0672SHong Zhang PetscReal afill; 784b92f168fSBarry Smith MatType mtype; 785cf1a0672SHong Zhang 786cf1a0672SHong Zhang PetscFunctionBegin; 7876718818eSStefano Zampini MatCheckProduct(C, 4); 78828b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 7899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 7909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 791a7c7454dSHong Zhang 792cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */ 7939566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 794cf1a0672SHong Zhang 795cf1a0672SHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 7969566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 79719f0e57aSHong Zhang 798cf1a0672SHong Zhang /* get P_loc by taking all local rows of P */ 7999566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 800cf1a0672SHong Zhang 801f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 8029371c9d4SSatish Balay pi_loc = p_loc->i; 8039371c9d4SSatish Balay pj_loc = p_loc->j; 804a7c7454dSHong Zhang if (size > 1) { 805f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 8069371c9d4SSatish Balay pi_oth = p_oth->i; 8079371c9d4SSatish Balay pj_oth = p_oth->j; 808968382fdSHong Zhang } else { 80920e3dc75SHong Zhang p_oth = NULL; 8109371c9d4SSatish Balay pi_oth = NULL; 8119371c9d4SSatish Balay pj_oth = NULL; 812a7c7454dSHong Zhang } 813cf1a0672SHong Zhang 814cf1a0672SHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 81584648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &api)); 816cf1a0672SHong Zhang ptap->api = api; 817cf1a0672SHong Zhang api[0] = 0; 818cf1a0672SHong Zhang 8199566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(lsize, &lnk)); 820cf1a0672SHong Zhang 821cf1a0672SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 8229566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space)); 823cf1a0672SHong Zhang current_space = free_space; 824d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 825cf1a0672SHong Zhang for (i = 0; i < am; i++) { 826cf1a0672SHong Zhang /* diagonal portion of A */ 827cf1a0672SHong Zhang nzi = adi[i + 1] - adi[i]; 828cf1a0672SHong Zhang for (j = 0; j < nzi; j++) { 829cf1a0672SHong Zhang row = *adj++; 830cf1a0672SHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 831cf1a0672SHong Zhang Jptr = pj_loc + pi_loc[row]; 8328a210135Sandi selinger /* Expand list if it is not long enough */ 8338328dd82Sandi selinger if (pnz + apnz_max > lsize) { 8348328dd82Sandi selinger lsize = pnz + apnz_max; 8359566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk)); 8368a210135Sandi selinger } 837cf1a0672SHong Zhang /* add non-zero cols of P into the sorted linked list lnk */ 8389566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk)); 8398a210135Sandi selinger apnz = *lnk; /* The first element in the list is the number of items in the list */ 8408a210135Sandi selinger api[i + 1] = api[i] + apnz; 8418c78258cSHong Zhang if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */ 842cf1a0672SHong Zhang } 843cf1a0672SHong Zhang /* off-diagonal portion of A */ 844cf1a0672SHong Zhang nzi = aoi[i + 1] - aoi[i]; 845cf1a0672SHong Zhang for (j = 0; j < nzi; j++) { 846cf1a0672SHong Zhang row = *aoj++; 847cf1a0672SHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 848cf1a0672SHong Zhang Jptr = pj_oth + pi_oth[row]; 8498a210135Sandi selinger /* Expand list if it is not long enough */ 8508328dd82Sandi selinger if (pnz + apnz_max > lsize) { 8518328dd82Sandi selinger lsize = pnz + apnz_max; 8529566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk)); 8538a210135Sandi selinger } 8548a210135Sandi selinger /* add non-zero cols of P into the sorted linked list lnk */ 8559566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk)); 8568a210135Sandi selinger apnz = *lnk; /* The first element in the list is the number of items in the list */ 8578a210135Sandi selinger api[i + 1] = api[i] + apnz; 8588c78258cSHong Zhang if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */ 859cf1a0672SHong Zhang } 8608c78258cSHong Zhang 8618c78258cSHong Zhang /* add missing diagonal entry */ 8628c78258cSHong Zhang if (C->force_diagonals) { 8638c78258cSHong Zhang j = i + rstart; /* column index */ 8649566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1, &j, lnk)); 8658c78258cSHong Zhang } 8668c78258cSHong Zhang 867f84c536bSHong Zhang apnz = *lnk; 868cf1a0672SHong Zhang api[i + 1] = api[i] + apnz; 8698a210135Sandi selinger if (apnz > apnz_max) apnz_max = apnz; 870cf1a0672SHong Zhang 871cf1a0672SHong Zhang /* if free space is not available, double the total space in the list */ 872cf1a0672SHong Zhang if (current_space->local_remaining < apnz) { 8739566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), ¤t_space)); 874cf1a0672SHong Zhang nspacedouble++; 875cf1a0672SHong Zhang } 876cf1a0672SHong Zhang 877cf1a0672SHong Zhang /* Copy data into free space, then initialize lnk */ 8789566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(apnz, current_space->array, lnk)); 8799566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz)); 8802205254eSKarl Rupp 881cf1a0672SHong Zhang current_space->array += apnz; 882cf1a0672SHong Zhang current_space->local_used += apnz; 883cf1a0672SHong Zhang current_space->local_remaining -= apnz; 884cf1a0672SHong Zhang } 885cf1a0672SHong Zhang 886cf1a0672SHong Zhang /* Allocate space for apj, initialize apj, and */ 887cf1a0672SHong Zhang /* destroy list of free space and other temporary array(s) */ 88884648c2dSPierre Jolivet PetscCall(PetscMalloc1(api[am], &ptap->apj)); 889cf1a0672SHong Zhang apj = ptap->apj; 8909566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj)); 8919566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 892cf1a0672SHong Zhang 8934222ddf1SHong Zhang /* create and assemble symbolic parallel matrix C */ 8949566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 8959566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 8969566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 8979566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 8989566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 899d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 900cf1a0672SHong Zhang 9014222ddf1SHong Zhang /* malloc apa for assembly C */ 9029566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(apnz_max, &ptap->apa)); 90317f75172Sandi selinger 9049566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 905*799b351eSPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 9069566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 9079566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 9089566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 909cf1a0672SHong Zhang 9104222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ; 9114222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 912cf1a0672SHong Zhang 9134222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 9146718818eSStefano Zampini C->product->data = ptap; 915cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult; 916cf1a0672SHong Zhang 917cf1a0672SHong Zhang /* set MatInfo */ 918118727c9SMark F. Adams afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 919cf1a0672SHong Zhang if (afill < 1.0) afill = 1.0; 9204222ddf1SHong Zhang C->info.mallocs = nspacedouble; 9214222ddf1SHong Zhang C->info.fill_ratio_given = fill; 9224222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 923cf1a0672SHong Zhang 924cf1a0672SHong Zhang #if defined(PETSC_USE_INFO) 925cf1a0672SHong Zhang if (api[am]) { 9269566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 9279566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 928cf1a0672SHong Zhang } else { 9299566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 930cf1a0672SHong Zhang } 931cf1a0672SHong Zhang #endif 9323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9331634b032SHong Zhang } 934f96d37fcSHong Zhang 935a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication. */ 936a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the */ 937a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once. */ 938d71ae5a4SJacob Faibussowitsch static void Merge3SortedArrays(PetscInt size1, PetscInt *in1, PetscInt size2, PetscInt *in2, PetscInt size3, PetscInt *in3, PetscInt *size4, PetscInt *out) 939d71ae5a4SJacob Faibussowitsch { 940a9d7e0ccSandi selinger int i = 0, j = 0, k = 0, l = 0; 941a9d7e0ccSandi selinger 942a9d7e0ccSandi selinger /* Traverse all three arrays */ 943a9d7e0ccSandi selinger while (i < size1 && j < size2 && k < size3) { 944a9d7e0ccSandi selinger if (in1[i] < in2[j] && in1[i] < in3[k]) { 945a9d7e0ccSandi selinger out[l++] = in1[i++]; 9469371c9d4SSatish Balay } else if (in2[j] < in1[i] && in2[j] < in3[k]) { 947a9d7e0ccSandi selinger out[l++] = in2[j++]; 9489371c9d4SSatish Balay } else if (in3[k] < in1[i] && in3[k] < in2[j]) { 949a9d7e0ccSandi selinger out[l++] = in3[k++]; 9509371c9d4SSatish Balay } else if (in1[i] == in2[j] && in1[i] < in3[k]) { 951a9d7e0ccSandi selinger out[l++] = in1[i]; 952a9d7e0ccSandi selinger i++, j++; 9539371c9d4SSatish Balay } else if (in1[i] == in3[k] && in1[i] < in2[j]) { 954a9d7e0ccSandi selinger out[l++] = in1[i]; 955a9d7e0ccSandi selinger i++, k++; 9569371c9d4SSatish Balay } else if (in3[k] == in2[j] && in2[j] < in1[i]) { 957a9d7e0ccSandi selinger out[l++] = in2[j]; 958a9d7e0ccSandi selinger k++, j++; 9599371c9d4SSatish Balay } else if (in1[i] == in2[j] && in1[i] == in3[k]) { 960a9d7e0ccSandi selinger out[l++] = in1[i]; 961a9d7e0ccSandi selinger i++, j++, k++; 962a9d7e0ccSandi selinger } 963a9d7e0ccSandi selinger } 964a9d7e0ccSandi selinger 965a9d7e0ccSandi selinger /* Traverse two remaining arrays */ 966a9d7e0ccSandi selinger while (i < size1 && j < size2) { 967a9d7e0ccSandi selinger if (in1[i] < in2[j]) { 968a9d7e0ccSandi selinger out[l++] = in1[i++]; 9699371c9d4SSatish Balay } else if (in1[i] > in2[j]) { 970a9d7e0ccSandi selinger out[l++] = in2[j++]; 9719371c9d4SSatish Balay } else { 972a9d7e0ccSandi selinger out[l++] = in1[i]; 973a9d7e0ccSandi selinger i++, j++; 974a9d7e0ccSandi selinger } 975a9d7e0ccSandi selinger } 976a9d7e0ccSandi selinger 977a9d7e0ccSandi selinger while (i < size1 && k < size3) { 978a9d7e0ccSandi selinger if (in1[i] < in3[k]) { 979a9d7e0ccSandi selinger out[l++] = in1[i++]; 9809371c9d4SSatish Balay } else if (in1[i] > in3[k]) { 981a9d7e0ccSandi selinger out[l++] = in3[k++]; 9829371c9d4SSatish Balay } else { 983a9d7e0ccSandi selinger out[l++] = in1[i]; 984a9d7e0ccSandi selinger i++, k++; 985a9d7e0ccSandi selinger } 986a9d7e0ccSandi selinger } 987a9d7e0ccSandi selinger 988a9d7e0ccSandi selinger while (k < size3 && j < size2) { 989a9d7e0ccSandi selinger if (in3[k] < in2[j]) { 990a9d7e0ccSandi selinger out[l++] = in3[k++]; 9919371c9d4SSatish Balay } else if (in3[k] > in2[j]) { 992a9d7e0ccSandi selinger out[l++] = in2[j++]; 9939371c9d4SSatish Balay } else { 994a9d7e0ccSandi selinger out[l++] = in3[k]; 995a9d7e0ccSandi selinger k++, j++; 996a9d7e0ccSandi selinger } 997a9d7e0ccSandi selinger } 998a9d7e0ccSandi selinger 999a9d7e0ccSandi selinger /* Traverse one remaining array */ 1000a9d7e0ccSandi selinger while (i < size1) out[l++] = in1[i++]; 1001a9d7e0ccSandi selinger while (j < size2) out[l++] = in2[j++]; 1002a9d7e0ccSandi selinger while (k < size3) out[l++] = in3[k++]; 1003a9d7e0ccSandi selinger 1004a9d7e0ccSandi selinger *size4 = l; 1005a9d7e0ccSandi selinger } 1006a9d7e0ccSandi selinger 100773b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and */ 100873b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential) */ 100973b67375Sandi selinger /* matrix-matrix multiplications. */ 1010d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C) 1011d71ae5a4SJacob Faibussowitsch { 1012a9d7e0ccSandi selinger MPI_Comm comm; 1013a9d7e0ccSandi selinger PetscMPIInt size; 1014cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 1015a9d7e0ccSandi selinger PetscFreeSpaceList free_space_diag = NULL, current_space = NULL; 1016a9d7e0ccSandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1017f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc; 1018a9d7e0ccSandi selinger Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1019a9d7e0ccSandi selinger Mat_SeqAIJ *adpd_seq, *p_off, *aopoth_seq; 1020a9d7e0ccSandi selinger PetscInt adponz, adpdnz; 10217dbaa2c6Sandi selinger PetscInt *pi_loc, *dnz, *onz; 1022a9d7e0ccSandi selinger PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, rstart = A->rmap->rstart; 10239371c9d4SSatish Balay PetscInt *lnk, i, i1 = 0, pnz, row, *adpoi, *adpoj, *api, *adpoJ, *aopJ, *apJ, *Jptr, aopnz, nspacedouble = 0, j, nzi, *apj, apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj; 1024a016958eSandi selinger PetscInt am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n, p_colstart, p_colend; 1025a9d7e0ccSandi selinger PetscBT lnkbt; 1026a9d7e0ccSandi selinger PetscReal afill; 1027a9d7e0ccSandi selinger PetscMPIInt rank; 1028a9d7e0ccSandi selinger Mat adpd, aopoth; 1029b92f168fSBarry Smith MatType mtype; 1030e83e5f86SFande Kong const char *prefix; 1031a9d7e0ccSandi selinger 1032a9d7e0ccSandi selinger PetscFunctionBegin; 10336718818eSStefano Zampini MatCheckProduct(C, 4); 103428b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 10359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 10369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 10379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 10389566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend)); 1039a9d7e0ccSandi selinger 1040cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */ 10419566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 1042a9d7e0ccSandi selinger 1043a9d7e0ccSandi selinger /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 10449566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 1045a9d7e0ccSandi selinger 1046a9d7e0ccSandi selinger /* get P_loc by taking all local rows of P */ 10479566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 1048a9d7e0ccSandi selinger 1049f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 1050a9d7e0ccSandi selinger pi_loc = p_loc->i; 1051a9d7e0ccSandi selinger 1052a9d7e0ccSandi selinger /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */ 105384648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &api)); 105484648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &adpoi)); 1055a9d7e0ccSandi selinger 1056a9d7e0ccSandi selinger adpoi[0] = 0; 1057a9d7e0ccSandi selinger ptap->api = api; 1058a9d7e0ccSandi selinger api[0] = 0; 1059a9d7e0ccSandi selinger 1060a9d7e0ccSandi selinger /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */ 10619566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt)); 1062d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 1063a9d7e0ccSandi selinger 1064a9d7e0ccSandi selinger /* Symbolic calc of A_loc_diag * P_loc_diag */ 10659566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 10669566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &adpd)); 10679566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 10689566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(adpd, prefix)); 10699566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(adpd, "inner_diag_")); 10704222ddf1SHong Zhang 10719566063dSJacob Faibussowitsch PetscCall(MatProductSetType(adpd, MATPRODUCT_AB)); 10729566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(adpd, "sorted")); 10739566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(adpd, fill)); 10749566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(adpd)); 10758c78258cSHong Zhang 10768c78258cSHong Zhang adpd->force_diagonals = C->force_diagonals; 10779566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic(adpd)); 10784222ddf1SHong Zhang 1079a9d7e0ccSandi selinger adpd_seq = (Mat_SeqAIJ *)((adpd)->data); 10809371c9d4SSatish Balay adpdi = adpd_seq->i; 10819371c9d4SSatish Balay adpdj = adpd_seq->j; 1082f4f49eeaSPierre Jolivet p_off = (Mat_SeqAIJ *)p->B->data; 10839371c9d4SSatish Balay poff_i = p_off->i; 10849371c9d4SSatish Balay poff_j = p_off->j; 1085a9d7e0ccSandi selinger 108673b67375Sandi selinger /* j_temp stores indices of a result row before they are added to the linked list */ 108784648c2dSPierre Jolivet PetscCall(PetscMalloc1(pN, &j_temp)); 1088a9d7e0ccSandi selinger 1089a9d7e0ccSandi selinger /* Symbolic calc of the A_diag * p_loc_off */ 1090a9d7e0ccSandi selinger /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 10919566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space_diag)); 1092a9d7e0ccSandi selinger current_space = free_space_diag; 1093a9d7e0ccSandi selinger 1094a9d7e0ccSandi selinger for (i = 0; i < am; i++) { 1095a9d7e0ccSandi selinger /* A_diag * P_loc_off */ 1096a9d7e0ccSandi selinger nzi = adi[i + 1] - adi[i]; 1097a9d7e0ccSandi selinger for (j = 0; j < nzi; j++) { 1098a9d7e0ccSandi selinger row = *adj++; 1099a9d7e0ccSandi selinger pnz = poff_i[row + 1] - poff_i[row]; 1100a9d7e0ccSandi selinger Jptr = poff_j + poff_i[row]; 1101ad540459SPierre Jolivet for (i1 = 0; i1 < pnz; i1++) j_temp[i1] = p->garray[Jptr[i1]]; 1102a9d7e0ccSandi selinger /* add non-zero cols of P into the sorted linked list lnk */ 11039566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, j_temp, lnk, lnkbt)); 1104a9d7e0ccSandi selinger } 1105a9d7e0ccSandi selinger 1106a9d7e0ccSandi selinger adponz = lnk[0]; 1107a9d7e0ccSandi selinger adpoi[i + 1] = adpoi[i] + adponz; 1108a9d7e0ccSandi selinger 1109a9d7e0ccSandi selinger /* if free space is not available, double the total space in the list */ 1110a9d7e0ccSandi selinger if (current_space->local_remaining < adponz) { 11119566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz, current_space->total_array_size), ¤t_space)); 1112a9d7e0ccSandi selinger nspacedouble++; 1113a9d7e0ccSandi selinger } 1114a9d7e0ccSandi selinger 1115a9d7e0ccSandi selinger /* Copy data into free space, then initialize lnk */ 11169566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(pN, adponz, current_space->array, lnk, lnkbt)); 1117a9d7e0ccSandi selinger 1118a9d7e0ccSandi selinger current_space->array += adponz; 1119a9d7e0ccSandi selinger current_space->local_used += adponz; 1120a9d7e0ccSandi selinger current_space->local_remaining -= adponz; 1121a9d7e0ccSandi selinger } 1122a9d7e0ccSandi selinger 1123a9d7e0ccSandi selinger /* Symbolic calc of A_off * P_oth */ 11249566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(a->B, prefix)); 11259566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(a->B, "inner_offdiag_")); 11269566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &aopoth)); 11279566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth)); 1128a9d7e0ccSandi selinger aopoth_seq = (Mat_SeqAIJ *)((aopoth)->data); 11299371c9d4SSatish Balay aopothi = aopoth_seq->i; 11309371c9d4SSatish Balay aopothj = aopoth_seq->j; 1131a9d7e0ccSandi selinger 1132a9d7e0ccSandi selinger /* Allocate space for apj, adpj, aopj, ... */ 1133a9d7e0ccSandi selinger /* destroy lists of free space and other temporary array(s) */ 1134a9d7e0ccSandi selinger 113584648c2dSPierre Jolivet PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am], &ptap->apj)); 113684648c2dSPierre Jolivet PetscCall(PetscMalloc1(adpoi[am], &adpoj)); 1137a9d7e0ccSandi selinger 1138a9d7e0ccSandi selinger /* Copy from linked list to j-array */ 11399566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space_diag, adpoj)); 11409566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 1141a9d7e0ccSandi selinger 1142a9d7e0ccSandi selinger adpoJ = adpoj; 1143a9d7e0ccSandi selinger adpdJ = adpdj; 1144a9d7e0ccSandi selinger aopJ = aopothj; 1145a9d7e0ccSandi selinger apj = ptap->apj; 1146a9d7e0ccSandi selinger apJ = apj; /* still empty */ 1147a9d7e0ccSandi selinger 1148a9d7e0ccSandi selinger /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */ 1149a9d7e0ccSandi selinger /* A_diag * P_loc_diag to get A*P */ 1150a9d7e0ccSandi selinger for (i = 0; i < am; i++) { 1151a9d7e0ccSandi selinger aopnz = aopothi[i + 1] - aopothi[i]; 1152a9d7e0ccSandi selinger adponz = adpoi[i + 1] - adpoi[i]; 1153a9d7e0ccSandi selinger adpdnz = adpdi[i + 1] - adpdi[i]; 1154a9d7e0ccSandi selinger 1155a9d7e0ccSandi selinger /* Correct indices from A_diag*P_diag */ 1156ad540459SPierre Jolivet for (i1 = 0; i1 < adpdnz; i1++) adpdJ[i1] += p_colstart; 1157a9d7e0ccSandi selinger /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */ 1158a9d7e0ccSandi selinger Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ); 11599566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, apJ, dnz, onz)); 1160a9d7e0ccSandi selinger 1161a9d7e0ccSandi selinger aopJ += aopnz; 1162a9d7e0ccSandi selinger adpoJ += adponz; 1163a9d7e0ccSandi selinger adpdJ += adpdnz; 1164a9d7e0ccSandi selinger apJ += apnz; 1165a9d7e0ccSandi selinger api[i + 1] = api[i] + apnz; 1166a9d7e0ccSandi selinger } 1167a9d7e0ccSandi selinger 1168a9d7e0ccSandi selinger /* malloc apa to store dense row A[i,:]*P */ 116984648c2dSPierre Jolivet PetscCall(PetscCalloc1(pN, &ptap->apa)); 1170a9d7e0ccSandi selinger 11714222ddf1SHong Zhang /* create and assemble symbolic parallel matrix C */ 11729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 11739566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 11749566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 11759566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 11769566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 1177d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 117817f75172Sandi selinger 11799566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 1180*799b351eSPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 11819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 11829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 11839566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 118417f75172Sandi selinger 11854222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 11864222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 1187a9d7e0ccSandi selinger 11884222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 11896718818eSStefano Zampini C->product->data = ptap; 1190cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult; 1191a9d7e0ccSandi selinger 1192a9d7e0ccSandi selinger /* set MatInfo */ 119373b67375Sandi selinger afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 119473b67375Sandi selinger if (afill < 1.0) afill = 1.0; 11954222ddf1SHong Zhang C->info.mallocs = nspacedouble; 11964222ddf1SHong Zhang C->info.fill_ratio_given = fill; 11974222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 1198a9d7e0ccSandi selinger 1199a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO) 1200a9d7e0ccSandi selinger if (api[am]) { 12019566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 12029566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 1203a9d7e0ccSandi selinger } else { 12049566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 1205a9d7e0ccSandi selinger } 1206a9d7e0ccSandi selinger #endif 1207a9d7e0ccSandi selinger 12089566063dSJacob Faibussowitsch PetscCall(MatDestroy(&aopoth)); 12099566063dSJacob Faibussowitsch PetscCall(MatDestroy(&adpd)); 12109566063dSJacob Faibussowitsch PetscCall(PetscFree(j_temp)); 12119566063dSJacob Faibussowitsch PetscCall(PetscFree(adpoj)); 12129566063dSJacob Faibussowitsch PetscCall(PetscFree(adpoi)); 12133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1214a9d7e0ccSandi selinger } 1215a9d7e0ccSandi selinger 1216c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */ 1217d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P, Mat A, Mat C) 1218d71ae5a4SJacob Faibussowitsch { 1219cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 122060552ceaSHong Zhang Mat Pt; 1221c216dbf3SHong Zhang 1222c216dbf3SHong Zhang PetscFunctionBegin; 12236718818eSStefano Zampini MatCheckProduct(C, 3); 1224cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data; 122528b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 122628b400f6SJacob Faibussowitsch PetscCheck(ptap->Pt, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 122760552ceaSHong Zhang 122860552ceaSHong Zhang Pt = ptap->Pt; 12291cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(P, Pt)); 12309566063dSJacob Faibussowitsch PetscCall(MatTranspose(P, MAT_REUSE_MATRIX, &Pt)); 12319566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt, A, C)); 12323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1233f96d37fcSHong Zhang } 1234f96d37fcSHong Zhang 1235c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */ 1236d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, PetscReal fill, Mat C) 1237d71ae5a4SJacob Faibussowitsch { 1238cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 12396718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1240912837bbSHong Zhang MPI_Comm comm; 1241912837bbSHong Zhang PetscMPIInt size, rank; 1242912837bbSHong Zhang PetscFreeSpaceList free_space = NULL, current_space = NULL; 12434ede91e3SHong Zhang PetscInt pn = P->cmap->n, aN = A->cmap->N, an = A->cmap->n; 12446497c311SBarry Smith PetscInt *lnk, i, k, rstart; 1245912837bbSHong Zhang PetscBT lnkbt; 12466497c311SBarry Smith PetscMPIInt tagi, tagj, *len_si, *len_s, *len_ri, nrecv, proc, nsend; 1247ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted = 0; 12488c78258cSHong Zhang PetscInt **buf_rj, **buf_ri, **buf_ri_k, row, ncols, *cols; 12496497c311SBarry Smith PetscInt len, *dnz, *onz, *owners, nzi; 1250912837bbSHong Zhang PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci; 1251912837bbSHong Zhang MPI_Request *swaits, *rwaits; 1252912837bbSHong Zhang MPI_Status *sstatus, rstatus; 1253912837bbSHong Zhang PetscLayout rowmap; 1254912837bbSHong Zhang PetscInt *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */ 1255912837bbSHong Zhang PetscMPIInt *len_r, *id_r; /* array of length of comm->size, store send/recv matrix values */ 12567f3e1f30SHong Zhang PetscInt *Jptr, *prmap = p->garray, con, j, Crmax; 12574ede91e3SHong Zhang Mat_SeqAIJ *a_loc, *c_loc, *c_oth; 1258eec179cfSJacob Faibussowitsch PetscHMapI ta; 1259b92f168fSBarry Smith MatType mtype; 1260e83e5f86SFande Kong const char *prefix; 1261912837bbSHong Zhang 1262912837bbSHong Zhang PetscFunctionBegin; 12639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 12649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 12659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1266912837bbSHong Zhang 12674222ddf1SHong Zhang /* create symbolic parallel matrix C */ 12689566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 12699566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 1270912837bbSHong Zhang 12714222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 1272912837bbSHong Zhang 1273cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */ 12749566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 1275912837bbSHong Zhang 1276912837bbSHong Zhang /* (0) compute Rd = Pd^T, Ro = Po^T */ 1277acd337a6SBarry Smith PetscCall(MatTranspose(p->A, MAT_INITIAL_MATRIX, &ptap->Rd)); 1278acd337a6SBarry Smith PetscCall(MatTranspose(p->B, MAT_INITIAL_MATRIX, &ptap->Ro)); 1279912837bbSHong Zhang 1280669e9c86SHong Zhang /* (1) compute symbolic A_loc */ 12819566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &ptap->A_loc)); 1282912837bbSHong Zhang 12834ede91e3SHong Zhang /* (2-1) compute symbolic C_oth = Ro*A_loc */ 12849566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 12859566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(ptap->Ro, prefix)); 12869566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(ptap->Ro, "inner_offdiag_")); 12879566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_oth)); 12889566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro, ptap->A_loc, fill, ptap->C_oth)); 1289912837bbSHong Zhang 1290912837bbSHong Zhang /* (3) send coj of C_oth to other processors */ 1291912837bbSHong Zhang /* determine row ownership */ 12929566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &rowmap)); 1293912837bbSHong Zhang rowmap->n = pn; 1294912837bbSHong Zhang rowmap->bs = 1; 12959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(rowmap)); 1296912837bbSHong Zhang owners = rowmap->range; 1297912837bbSHong Zhang 1298912837bbSHong Zhang /* determine the number of messages to send, their lengths */ 129984648c2dSPierre Jolivet PetscCall(PetscMalloc4(size, &len_s, size, &len_si, size, &sstatus, size + 1, &owners_co)); 13009566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(len_s, size)); 13019566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(len_si, size)); 1302912837bbSHong Zhang 1303912837bbSHong Zhang c_oth = (Mat_SeqAIJ *)ptap->C_oth->data; 13049371c9d4SSatish Balay coi = c_oth->i; 13059371c9d4SSatish Balay coj = c_oth->j; 1306912837bbSHong Zhang con = ptap->C_oth->rmap->n; 1307912837bbSHong Zhang proc = 0; 1308912837bbSHong Zhang for (i = 0; i < con; i++) { 1309912837bbSHong Zhang while (prmap[i] >= owners[proc + 1]) proc++; 13107f3e1f30SHong Zhang len_si[proc]++; /* num of rows in Co(=Pt*A) to be sent to [proc] */ 1311912837bbSHong Zhang len_s[proc] += coi[i + 1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */ 1312912837bbSHong Zhang } 1313912837bbSHong Zhang 1314912837bbSHong Zhang len = 0; /* max length of buf_si[], see (4) */ 1315912837bbSHong Zhang owners_co[0] = 0; 1316912837bbSHong Zhang nsend = 0; 1317912837bbSHong Zhang for (proc = 0; proc < size; proc++) { 1318912837bbSHong Zhang owners_co[proc + 1] = owners_co[proc] + len_si[proc]; 1319912837bbSHong Zhang if (len_s[proc]) { 1320912837bbSHong Zhang nsend++; 1321912837bbSHong Zhang len_si[proc] = 2 * (len_si[proc] + 1); /* length of buf_si to be sent to [proc] */ 1322912837bbSHong Zhang len += len_si[proc]; 1323912837bbSHong Zhang } 1324912837bbSHong Zhang } 1325912837bbSHong Zhang 1326912837bbSHong Zhang /* determine the number and length of messages to receive for coi and coj */ 13279566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &nrecv)); 13289566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, nsend, nrecv, len_s, len_si, &id_r, &len_r, &len_ri)); 1329912837bbSHong Zhang 1330912837bbSHong Zhang /* post the Irecv and Isend of coj */ 13319566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 13329566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, nrecv, id_r, len_r, &buf_rj, &rwaits)); 133384648c2dSPierre Jolivet PetscCall(PetscMalloc1(nsend, &swaits)); 1334912837bbSHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1335912837bbSHong Zhang if (!len_s[proc]) continue; 1336912837bbSHong Zhang i = owners_co[proc]; 13376497c311SBarry Smith PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k)); 1338912837bbSHong Zhang k++; 1339912837bbSHong Zhang } 1340912837bbSHong Zhang 13417f3e1f30SHong Zhang /* (2-2) compute symbolic C_loc = Rd*A_loc */ 13429566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(ptap->Rd, prefix)); 13439566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(ptap->Rd, "inner_diag_")); 13449566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_loc)); 13459566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd, ptap->A_loc, fill, ptap->C_loc)); 1346912837bbSHong Zhang c_loc = (Mat_SeqAIJ *)ptap->C_loc->data; 1347912837bbSHong Zhang 1348912837bbSHong Zhang /* receives coj are complete */ 134948a46eb9SPierre Jolivet for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus)); 13509566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 13519566063dSJacob Faibussowitsch if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus)); 1352912837bbSHong Zhang 1353912837bbSHong Zhang /* add received column indices into ta to update Crmax */ 1354f4f49eeaSPierre Jolivet a_loc = (Mat_SeqAIJ *)ptap->A_loc->data; 1355669e9c86SHong Zhang 1356669e9c86SHong Zhang /* create and initialize a linked list */ 1357eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(an, &ta)); /* for compute Crmax */ 13584ede91e3SHong Zhang MatRowMergeMax_SeqAIJ(a_loc, ptap->A_loc->rmap->N, ta); 1359669e9c86SHong Zhang 1360912837bbSHong Zhang for (k = 0; k < nrecv; k++) { /* k-th received message */ 1361912837bbSHong Zhang Jptr = buf_rj[k]; 1362c76ffc5fSJacob Faibussowitsch for (j = 0; j < len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1)); 1363912837bbSHong Zhang } 1364eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Crmax)); 1365eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 1366912837bbSHong Zhang 1367912837bbSHong Zhang /* (4) send and recv coi */ 13689566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 13699566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, nrecv, id_r, len_ri, &buf_ri, &rwaits)); 137084648c2dSPierre Jolivet PetscCall(PetscMalloc1(len, &buf_s)); 1371912837bbSHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 1372912837bbSHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1373912837bbSHong Zhang if (!len_s[proc]) continue; 1374912837bbSHong Zhang /* form outgoing message for i-structure: 1375912837bbSHong Zhang buf_si[0]: nrows to be sent 1376912837bbSHong Zhang [1:nrows]: row index (global) 1377912837bbSHong Zhang [nrows+1:2*nrows+1]: i-structure index 1378912837bbSHong Zhang */ 1379912837bbSHong Zhang nrows = len_si[proc] / 2 - 1; /* num of rows in Co to be sent to [proc] */ 1380912837bbSHong Zhang buf_si_i = buf_si + nrows + 1; 1381912837bbSHong Zhang buf_si[0] = nrows; 1382912837bbSHong Zhang buf_si_i[0] = 0; 1383912837bbSHong Zhang nrows = 0; 1384912837bbSHong Zhang for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) { 1385912837bbSHong Zhang nzi = coi[i + 1] - coi[i]; 1386912837bbSHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi; /* i-structure */ 1387912837bbSHong Zhang buf_si[nrows + 1] = prmap[i] - owners[proc]; /* local row index */ 1388912837bbSHong Zhang nrows++; 1389912837bbSHong Zhang } 13906497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k)); 1391912837bbSHong Zhang k++; 1392912837bbSHong Zhang buf_si += len_si[proc]; 1393912837bbSHong Zhang } 139448a46eb9SPierre Jolivet for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus)); 13959566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 13969566063dSJacob Faibussowitsch if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus)); 1397912837bbSHong Zhang 13989566063dSJacob Faibussowitsch PetscCall(PetscFree4(len_s, len_si, sstatus, owners_co)); 13999566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 14009566063dSJacob Faibussowitsch PetscCall(PetscFree(swaits)); 14019566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 1402912837bbSHong Zhang 14034222ddf1SHong Zhang /* (5) compute the local portion of C */ 1404bbea24aaSStefano Zampini /* set initial free space to be Crmax, sufficient for holding nonzeros in each row of C */ 14059566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(Crmax, &free_space)); 1406912837bbSHong Zhang current_space = free_space; 1407912837bbSHong Zhang 14089566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nrecv, &buf_ri_k, nrecv, &nextrow, nrecv, &nextci)); 1409912837bbSHong Zhang for (k = 0; k < nrecv; k++) { 1410912837bbSHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1411912837bbSHong Zhang nrows = *buf_ri_k[k]; 1412912837bbSHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 1413a5b23f4aSJose E. Roman nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 1414912837bbSHong Zhang } 1415912837bbSHong Zhang 1416d0609cedSBarry Smith MatPreallocateBegin(comm, pn, an, dnz, onz); 14179566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(Crmax, aN, &lnk, &lnkbt)); 14188c78258cSHong Zhang for (i = 0; i < pn; i++) { /* for each local row of C */ 14194222ddf1SHong Zhang /* add C_loc into C */ 1420912837bbSHong Zhang nzi = c_loc->i[i + 1] - c_loc->i[i]; 1421912837bbSHong Zhang Jptr = c_loc->j + c_loc->i[i]; 14229566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt)); 1423912837bbSHong Zhang 1424912837bbSHong Zhang /* add received col data into lnk */ 1425912837bbSHong Zhang for (k = 0; k < nrecv; k++) { /* k-th received message */ 1426912837bbSHong Zhang if (i == *nextrow[k]) { /* i-th row */ 1427912837bbSHong Zhang nzi = *(nextci[k] + 1) - *nextci[k]; 1428912837bbSHong Zhang Jptr = buf_rj[k] + *nextci[k]; 14299566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt)); 14309371c9d4SSatish Balay nextrow[k]++; 14319371c9d4SSatish Balay nextci[k]++; 1432912837bbSHong Zhang } 1433912837bbSHong Zhang } 14348c78258cSHong Zhang 14358c78258cSHong Zhang /* add missing diagonal entry */ 14368c78258cSHong Zhang if (C->force_diagonals) { 14378c78258cSHong Zhang k = i + owners[rank]; /* column index */ 14389566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1, &k, lnk, lnkbt)); 14398c78258cSHong Zhang } 14408c78258cSHong Zhang 1441912837bbSHong Zhang nzi = lnk[0]; 1442912837bbSHong Zhang 1443912837bbSHong Zhang /* copy data into free space, then initialize lnk */ 14449566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(aN, nzi, current_space->array, lnk, lnkbt)); 14459566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], nzi, current_space->array, dnz, onz)); 1446912837bbSHong Zhang } 14479566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 14489566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 14499566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceDestroy(free_space)); 1450912837bbSHong Zhang 1451912837bbSHong Zhang /* local sizes and preallocation */ 14529566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, pn, an, PETSC_DETERMINE, PETSC_DETERMINE)); 145358b7e2c1SStefano Zampini PetscCall(PetscLayoutSetBlockSize(C->rmap, P->cmap->bs)); 145458b7e2c1SStefano Zampini PetscCall(PetscLayoutSetBlockSize(C->cmap, A->cmap->bs)); 14559566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 1456d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 1457912837bbSHong Zhang 145869be949aSStefano Zampini /* add C_loc and C_oth to C */ 14599566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(C, &rstart, NULL)); 146069be949aSStefano Zampini for (i = 0; i < pn; i++) { 14618c78258cSHong Zhang ncols = c_loc->i[i + 1] - c_loc->i[i]; 14628c78258cSHong Zhang cols = c_loc->j + c_loc->i[i]; 14638c78258cSHong Zhang row = rstart + i; 14649566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES)); 14658c78258cSHong Zhang 146648a46eb9SPierre Jolivet if (C->force_diagonals) PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, 1, (const PetscInt *)&row, NULL, INSERT_VALUES)); 146769be949aSStefano Zampini } 146869be949aSStefano Zampini for (i = 0; i < con; i++) { 14698c78258cSHong Zhang ncols = c_oth->i[i + 1] - c_oth->i[i]; 14708c78258cSHong Zhang cols = c_oth->j + c_oth->i[i]; 14718c78258cSHong Zhang row = prmap[i]; 14729566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES)); 147369be949aSStefano Zampini } 14749566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 14759566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 14769566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 147769be949aSStefano Zampini 1478912837bbSHong Zhang /* members in merge */ 14799566063dSJacob Faibussowitsch PetscCall(PetscFree(id_r)); 14809566063dSJacob Faibussowitsch PetscCall(PetscFree(len_r)); 14819566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_ri[0])); 14829566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_ri)); 14839566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_rj[0])); 14849566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_rj)); 14859566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&rowmap)); 1486912837bbSHong Zhang 14874222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 14886718818eSStefano Zampini C->product->data = ptap; 1489cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP; 14903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1491912837bbSHong Zhang } 1492912837bbSHong Zhang 1493d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, Mat C) 1494d71ae5a4SJacob Faibussowitsch { 14956718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1496669e9c86SHong Zhang Mat_SeqAIJ *c_seq; 1497cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 1498669e9c86SHong Zhang Mat A_loc, C_loc, C_oth; 1499912837bbSHong Zhang PetscInt i, rstart, rend, cm, ncols, row; 1500912837bbSHong Zhang const PetscInt *cols; 1501912837bbSHong Zhang const PetscScalar *vals; 1502912837bbSHong Zhang 1503912837bbSHong Zhang PetscFunctionBegin; 15046718818eSStefano Zampini MatCheckProduct(C, 3); 1505cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data; 150628b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 150728b400f6SJacob Faibussowitsch PetscCheck(ptap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 15089566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(C)); 1509912837bbSHong Zhang 1510669e9c86SHong Zhang /* These matrices are obtained in MatTransposeMatMultSymbolic() */ 1511669e9c86SHong Zhang /* 1) get R = Pd^T, Ro = Po^T */ 15121cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(p->A, ptap->Rd)); 1513acd337a6SBarry Smith PetscCall(MatTranspose(p->A, MAT_REUSE_MATRIX, &ptap->Rd)); 15141cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(p->B, ptap->Ro)); 1515acd337a6SBarry Smith PetscCall(MatTranspose(p->B, MAT_REUSE_MATRIX, &ptap->Ro)); 1516669e9c86SHong Zhang 1517669e9c86SHong Zhang /* 2) compute numeric A_loc */ 15189566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &ptap->A_loc)); 1519912837bbSHong Zhang 1520669e9c86SHong Zhang /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */ 15214ede91e3SHong Zhang A_loc = ptap->A_loc; 1522f4f49eeaSPierre Jolivet PetscCall(ptap->C_loc->ops->matmultnumeric(ptap->Rd, A_loc, ptap->C_loc)); 1523f4f49eeaSPierre Jolivet PetscCall(ptap->C_oth->ops->matmultnumeric(ptap->Ro, A_loc, ptap->C_oth)); 1524912837bbSHong Zhang C_loc = ptap->C_loc; 1525912837bbSHong Zhang C_oth = ptap->C_oth; 1526912837bbSHong Zhang 152769be949aSStefano Zampini /* add C_loc and C_oth to C */ 15289566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(C, &rstart, &rend)); 1529912837bbSHong Zhang 1530912837bbSHong Zhang /* C_loc -> C */ 1531912837bbSHong Zhang cm = C_loc->rmap->N; 1532912837bbSHong Zhang c_seq = (Mat_SeqAIJ *)C_loc->data; 1533912837bbSHong Zhang cols = c_seq->j; 1534912837bbSHong Zhang vals = c_seq->a; 1535912837bbSHong Zhang for (i = 0; i < cm; i++) { 1536912837bbSHong Zhang ncols = c_seq->i[i + 1] - c_seq->i[i]; 1537912837bbSHong Zhang row = rstart + i; 15389566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES)); 15399371c9d4SSatish Balay cols += ncols; 15409371c9d4SSatish Balay vals += ncols; 1541912837bbSHong Zhang } 1542912837bbSHong Zhang 1543912837bbSHong Zhang /* Co -> C, off-processor part */ 1544912837bbSHong Zhang cm = C_oth->rmap->N; 1545912837bbSHong Zhang c_seq = (Mat_SeqAIJ *)C_oth->data; 1546912837bbSHong Zhang cols = c_seq->j; 1547912837bbSHong Zhang vals = c_seq->a; 1548912837bbSHong Zhang for (i = 0; i < cm; i++) { 1549912837bbSHong Zhang ncols = c_seq->i[i + 1] - c_seq->i[i]; 1550912837bbSHong Zhang row = p->garray[i]; 15519566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES)); 15529371c9d4SSatish Balay cols += ncols; 15539371c9d4SSatish Balay vals += ncols; 1554912837bbSHong Zhang } 15559566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 15569566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 15579566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 15583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1559912837bbSHong Zhang } 1560912837bbSHong Zhang 1561d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P, Mat A, Mat C) 1562d71ae5a4SJacob Faibussowitsch { 1563cc1eb50dSBarry Smith MatMergeSeqsToMPI *merge; 15646718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1565f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data; 1566cc1eb50dSBarry Smith MatProductCtx_APMPI *ap; 1567e745005bSHong Zhang PetscInt *adj; 1568e745005bSHong Zhang PetscInt i, j, k, anz, pnz, row, *cj, nexta; 1569e745005bSHong Zhang MatScalar *ada, *ca, valtmp; 1570d6ab1dc0SHong Zhang PetscInt am = A->rmap->n, cm = C->rmap->n, pon = (p->B)->cmap->n; 1571ce94432eSBarry Smith MPI_Comm comm; 15726497c311SBarry Smith PetscMPIInt size, rank, taga, *len_s, proc; 15736497c311SBarry Smith PetscInt *owners, nrows, **buf_ri_k, **nextrow, **nextci; 1574d6ab1dc0SHong Zhang PetscInt **buf_ri, **buf_rj; 1575d6ab1dc0SHong Zhang PetscInt cnz = 0, *bj_i, *bi, *bj, bnz, nextcj; /* bi,bj,ba: local array of C(mpi mat) */ 1576d6ab1dc0SHong Zhang MPI_Request *s_waits, *r_waits; 1577d6ab1dc0SHong Zhang MPI_Status *status; 1578d6ab1dc0SHong Zhang MatScalar **abuf_r, *ba_i, *pA, *coa, *ba; 1579ce496241SStefano Zampini const PetscScalar *dummy; 15804e201bd7SHong Zhang PetscInt *ai, *aj, *coi, *coj, *poJ, *pdJ; 1581d6ab1dc0SHong Zhang Mat A_loc; 1582d6ab1dc0SHong Zhang Mat_SeqAIJ *a_loc; 1583d6ab1dc0SHong Zhang 1584d6ab1dc0SHong Zhang PetscFunctionBegin; 15856718818eSStefano Zampini MatCheckProduct(C, 3); 1586cc1eb50dSBarry Smith ap = (MatProductCtx_APMPI *)C->product->data; 15871cdffd5eSHong Zhang PetscCheck(ap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be computed. Missing data"); 15881cdffd5eSHong Zhang PetscCheck(ap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 15899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 15909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 15919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1592d6ab1dc0SHong Zhang 15931cdffd5eSHong Zhang merge = ap->merge; 1594d6ab1dc0SHong Zhang 1595e745005bSHong Zhang /* 2) compute numeric C_seq = P_loc^T*A_loc */ 1596d6ab1dc0SHong Zhang /* get data from symbolic products */ 15979371c9d4SSatish Balay coi = merge->coi; 15989371c9d4SSatish Balay coj = merge->coj; 159984648c2dSPierre Jolivet PetscCall(PetscCalloc1(coi[pon], &coa)); 16009371c9d4SSatish Balay bi = merge->bi; 16019371c9d4SSatish Balay bj = merge->bj; 1602d6ab1dc0SHong Zhang owners = merge->rowmap->range; 160384648c2dSPierre Jolivet PetscCall(PetscCalloc1(bi[cm], &ba)); 1604d6ab1dc0SHong Zhang 1605d6ab1dc0SHong Zhang /* get A_loc by taking all local rows of A */ 16061cdffd5eSHong Zhang A_loc = ap->A_loc; 16079566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &A_loc)); 160857508eceSPierre Jolivet a_loc = (Mat_SeqAIJ *)A_loc->data; 1609d6ab1dc0SHong Zhang ai = a_loc->i; 1610d6ab1dc0SHong Zhang aj = a_loc->j; 1611d6ab1dc0SHong Zhang 1612ce496241SStefano Zampini /* trigger copy to CPU */ 16139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &dummy)); 16149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &dummy)); 16159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &dummy)); 16169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &dummy)); 1617d6ab1dc0SHong Zhang for (i = 0; i < am; i++) { 1618d6ab1dc0SHong Zhang anz = ai[i + 1] - ai[i]; 1619d6ab1dc0SHong Zhang adj = aj + ai[i]; 1620d6ab1dc0SHong Zhang ada = a_loc->a + ai[i]; 1621d6ab1dc0SHong Zhang 1622d6ab1dc0SHong Zhang /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */ 1623d6ab1dc0SHong Zhang /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */ 1624d6ab1dc0SHong Zhang pnz = po->i[i + 1] - po->i[i]; 1625d6ab1dc0SHong Zhang poJ = po->j + po->i[i]; 1626d6ab1dc0SHong Zhang pA = po->a + po->i[i]; 1627d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1628d6ab1dc0SHong Zhang row = poJ[j]; 1629d6ab1dc0SHong Zhang cj = coj + coi[row]; 1630d6ab1dc0SHong Zhang ca = coa + coi[row]; 1631e745005bSHong Zhang /* perform sparse axpy */ 1632e745005bSHong Zhang nexta = 0; 1633d6ab1dc0SHong Zhang valtmp = pA[j]; 1634e745005bSHong Zhang for (k = 0; nexta < anz; k++) { 1635e745005bSHong Zhang if (cj[k] == adj[nexta]) { 1636e745005bSHong Zhang ca[k] += valtmp * ada[nexta]; 1637e745005bSHong Zhang nexta++; 1638d6ab1dc0SHong Zhang } 1639e745005bSHong Zhang } 16409566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * anz)); 1641d6ab1dc0SHong Zhang } 1642d6ab1dc0SHong Zhang 1643d6ab1dc0SHong Zhang /* put the value into Cd (diagonal part) */ 1644d6ab1dc0SHong Zhang pnz = pd->i[i + 1] - pd->i[i]; 1645d6ab1dc0SHong Zhang pdJ = pd->j + pd->i[i]; 1646d6ab1dc0SHong Zhang pA = pd->a + pd->i[i]; 1647d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1648d6ab1dc0SHong Zhang row = pdJ[j]; 1649d6ab1dc0SHong Zhang cj = bj + bi[row]; 1650d6ab1dc0SHong Zhang ca = ba + bi[row]; 1651e745005bSHong Zhang /* perform sparse axpy */ 1652e745005bSHong Zhang nexta = 0; 1653d6ab1dc0SHong Zhang valtmp = pA[j]; 1654e745005bSHong Zhang for (k = 0; nexta < anz; k++) { 1655e745005bSHong Zhang if (cj[k] == adj[nexta]) { 1656e745005bSHong Zhang ca[k] += valtmp * ada[nexta]; 1657e745005bSHong Zhang nexta++; 1658d6ab1dc0SHong Zhang } 1659e745005bSHong Zhang } 16609566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * anz)); 1661d6ab1dc0SHong Zhang } 1662d6ab1dc0SHong Zhang } 1663d6ab1dc0SHong Zhang 1664d6ab1dc0SHong Zhang /* 3) send and recv matrix values coa */ 1665d6ab1dc0SHong Zhang buf_ri = merge->buf_ri; 1666d6ab1dc0SHong Zhang buf_rj = merge->buf_rj; 1667d6ab1dc0SHong Zhang len_s = merge->len_s; 16689566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &taga)); 16699566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 1670d6ab1dc0SHong Zhang 167184648c2dSPierre Jolivet PetscCall(PetscMalloc2(merge->nsend, &s_waits, size, &status)); 1672d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1673d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1674d6ab1dc0SHong Zhang i = merge->owners_co[proc]; 16756497c311SBarry Smith PetscCallMPI(MPIU_Isend(coa + coi[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 1676d6ab1dc0SHong Zhang k++; 1677d6ab1dc0SHong Zhang } 16789566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 16799566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 1680d6ab1dc0SHong Zhang 16819566063dSJacob Faibussowitsch PetscCall(PetscFree2(s_waits, status)); 16829566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 16839566063dSJacob Faibussowitsch PetscCall(PetscFree(coa)); 1684d6ab1dc0SHong Zhang 1685d6ab1dc0SHong Zhang /* 4) insert local Cseq and received values into Cmpi */ 16869566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci)); 1687d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { 1688e745005bSHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1689f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 1690d6ab1dc0SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 1691a5b23f4aSJose E. Roman nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 1692d6ab1dc0SHong Zhang } 1693d6ab1dc0SHong Zhang 1694d6ab1dc0SHong Zhang for (i = 0; i < cm; i++) { 1695d6ab1dc0SHong Zhang row = owners[rank] + i; /* global row index of C_seq */ 1696d6ab1dc0SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of C */ 1697d6ab1dc0SHong Zhang ba_i = ba + bi[i]; 1698d6ab1dc0SHong Zhang bnz = bi[i + 1] - bi[i]; 1699d6ab1dc0SHong Zhang /* add received vals into ba */ 1700d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 1701d6ab1dc0SHong Zhang /* i-th row */ 1702d6ab1dc0SHong Zhang if (i == *nextrow[k]) { 1703d6ab1dc0SHong Zhang cnz = *(nextci[k] + 1) - *nextci[k]; 1704f4f49eeaSPierre Jolivet cj = buf_rj[k] + *nextci[k]; 1705f4f49eeaSPierre Jolivet ca = abuf_r[k] + *nextci[k]; 1706d6ab1dc0SHong Zhang nextcj = 0; 1707d6ab1dc0SHong Zhang for (j = 0; nextcj < cnz; j++) { 1708d6ab1dc0SHong Zhang if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */ 1709d6ab1dc0SHong Zhang ba_i[j] += ca[nextcj++]; 1710d6ab1dc0SHong Zhang } 1711d6ab1dc0SHong Zhang } 17129371c9d4SSatish Balay nextrow[k]++; 17139371c9d4SSatish Balay nextci[k]++; 17149566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * cnz)); 1715d6ab1dc0SHong Zhang } 1716d6ab1dc0SHong Zhang } 17179566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, bnz, bj_i, ba_i, INSERT_VALUES)); 1718d6ab1dc0SHong Zhang } 17199566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 17209566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 1721d6ab1dc0SHong Zhang 17229566063dSJacob Faibussowitsch PetscCall(PetscFree(ba)); 17239566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 17249566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 17259566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 17263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1727d6ab1dc0SHong Zhang } 1728d6ab1dc0SHong Zhang 1729d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P, Mat A, PetscReal fill, Mat C) 1730d71ae5a4SJacob Faibussowitsch { 1731b419842dSStefano Zampini Mat A_loc; 1732cc1eb50dSBarry Smith MatProductCtx_APMPI *ap; 17330298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 17346718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data, *a = (Mat_MPIAIJ *)A->data; 1735d6ab1dc0SHong Zhang PetscInt *pdti, *pdtj, *poti, *potj, *ptJ; 1736d6ab1dc0SHong Zhang PetscInt nnz; 1737d6ab1dc0SHong Zhang PetscInt *lnk, *owners_co, *coi, *coj, i, k, pnz, row; 1738d6ab1dc0SHong Zhang PetscInt am = A->rmap->n, pn = P->cmap->n; 1739ce94432eSBarry Smith MPI_Comm comm; 17406497c311SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_si, *len_s, *len_ri, proc; 1741d6ab1dc0SHong Zhang PetscInt **buf_rj, **buf_ri, **buf_ri_k; 17426497c311SBarry Smith PetscInt len, *dnz, *onz, *owners; 1743d6ab1dc0SHong Zhang PetscInt nzi, *bi, *bj; 1744d6ab1dc0SHong Zhang PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci; 1745d6ab1dc0SHong Zhang MPI_Request *swaits, *rwaits; 1746d6ab1dc0SHong Zhang MPI_Status *sstatus, rstatus; 1747cc1eb50dSBarry Smith MatMergeSeqsToMPI *merge; 1748d6ab1dc0SHong Zhang PetscInt *ai, *aj, *Jptr, anz, *prmap = p->garray, pon, nspacedouble = 0, j; 1749d6ab1dc0SHong Zhang PetscReal afill = 1.0, afill_tmp; 1750eec179cfSJacob Faibussowitsch PetscInt rstart = P->cmap->rstart, rmax, Armax; 1751b419842dSStefano Zampini Mat_SeqAIJ *a_loc; 1752eec179cfSJacob Faibussowitsch PetscHMapI ta; 1753b92f168fSBarry Smith MatType mtype; 1754d6ab1dc0SHong Zhang 1755d6ab1dc0SHong Zhang PetscFunctionBegin; 17569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1757d6ab1dc0SHong Zhang /* check if matrix local sizes are compatible */ 17589371c9d4SSatish Balay PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, 17599371c9d4SSatish Balay A->rmap->rend, P->rmap->rstart, P->rmap->rend); 1760d6ab1dc0SHong Zhang 17619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1763d6ab1dc0SHong Zhang 1764cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */ 17651cdffd5eSHong Zhang PetscCall(PetscNew(&ap)); 1766d6ab1dc0SHong Zhang 1767d6ab1dc0SHong Zhang /* get A_loc by taking all local rows of A */ 17689566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &A_loc)); 17692205254eSKarl Rupp 17701cdffd5eSHong Zhang ap->A_loc = A_loc; 177157508eceSPierre Jolivet a_loc = (Mat_SeqAIJ *)A_loc->data; 1772d6ab1dc0SHong Zhang ai = a_loc->i; 1773d6ab1dc0SHong Zhang aj = a_loc->j; 1774d6ab1dc0SHong Zhang 1775d6ab1dc0SHong Zhang /* determine symbolic Co=(p->B)^T*A - send to others */ 17769566063dSJacob Faibussowitsch PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj)); 17779566063dSJacob Faibussowitsch PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B, &poti, &potj)); 1778d6ab1dc0SHong Zhang pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors 1779d6ab1dc0SHong Zhang >= (num of nonzero rows of C_seq) - pn */ 17809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pon + 1, &coi)); 1781d6ab1dc0SHong Zhang coi[0] = 0; 1782d6ab1dc0SHong Zhang 1783d6ab1dc0SHong Zhang /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */ 1784f91af8c7SBarry Smith nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(poti[pon], ai[am])); 17859566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(nnz, &free_space)); 1786d6ab1dc0SHong Zhang current_space = free_space; 178719f0e57aSHong Zhang 1788d6ab1dc0SHong Zhang /* create and initialize a linked list */ 1789eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(A->cmap->n + a->B->cmap->N, &ta)); 17904b38b95cSHong Zhang MatRowMergeMax_SeqAIJ(a_loc, am, ta); 1791eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Armax)); 179233ba5e2fSHong Zhang 17939566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk)); 1794d6ab1dc0SHong Zhang 1795d6ab1dc0SHong Zhang for (i = 0; i < pon; i++) { 1796d6ab1dc0SHong Zhang pnz = poti[i + 1] - poti[i]; 1797d6ab1dc0SHong Zhang ptJ = potj + poti[i]; 1798d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1799d6ab1dc0SHong Zhang row = ptJ[j]; /* row of A_loc == col of Pot */ 1800d6ab1dc0SHong Zhang anz = ai[row + 1] - ai[row]; 1801d6ab1dc0SHong Zhang Jptr = aj + ai[row]; 1802d6ab1dc0SHong Zhang /* add non-zero cols of AP into the sorted linked list lnk */ 18039566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk)); 1804d6ab1dc0SHong Zhang } 1805d6ab1dc0SHong Zhang nnz = lnk[0]; 1806d6ab1dc0SHong Zhang 1807d6ab1dc0SHong Zhang /* If free space is not available, double the total space in the list */ 1808d6ab1dc0SHong Zhang if (current_space->local_remaining < nnz) { 18099566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), ¤t_space)); 1810d6ab1dc0SHong Zhang nspacedouble++; 1811d6ab1dc0SHong Zhang } 1812d6ab1dc0SHong Zhang 1813d6ab1dc0SHong Zhang /* Copy data into free space, and zero out denserows */ 18149566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk)); 18152205254eSKarl Rupp 1816d6ab1dc0SHong Zhang current_space->array += nnz; 1817d6ab1dc0SHong Zhang current_space->local_used += nnz; 1818d6ab1dc0SHong Zhang current_space->local_remaining -= nnz; 18192205254eSKarl Rupp 1820d6ab1dc0SHong Zhang coi[i + 1] = coi[i] + nnz; 1821d6ab1dc0SHong Zhang } 1822d6ab1dc0SHong Zhang 182384648c2dSPierre Jolivet PetscCall(PetscMalloc1(coi[pon], &coj)); 18249566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, coj)); 18259566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */ 18262205254eSKarl Rupp 1827118727c9SMark F. Adams afill_tmp = (PetscReal)coi[pon] / (poti[pon] + ai[am] + 1); 1828d6ab1dc0SHong Zhang if (afill_tmp > afill) afill = afill_tmp; 1829d6ab1dc0SHong Zhang 1830d6ab1dc0SHong Zhang /* send j-array (coj) of Co to other processors */ 1831d6ab1dc0SHong Zhang /* determine row ownership */ 18329566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 18339566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 18342205254eSKarl Rupp 1835d6ab1dc0SHong Zhang merge->rowmap->n = pn; 1836d6ab1dc0SHong Zhang merge->rowmap->bs = 1; 18372205254eSKarl Rupp 18389566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 1839d6ab1dc0SHong Zhang owners = merge->rowmap->range; 1840d6ab1dc0SHong Zhang 1841d6ab1dc0SHong Zhang /* determine the number of messages to send, their lengths */ 18429566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &len_si)); 18439566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &merge->len_s)); 18442205254eSKarl Rupp 1845d6ab1dc0SHong Zhang len_s = merge->len_s; 1846d6ab1dc0SHong Zhang merge->nsend = 0; 1847d6ab1dc0SHong Zhang 184884648c2dSPierre Jolivet PetscCall(PetscMalloc1(size + 1, &owners_co)); 1849d6ab1dc0SHong Zhang 1850d6ab1dc0SHong Zhang proc = 0; 1851d6ab1dc0SHong Zhang for (i = 0; i < pon; i++) { 1852d6ab1dc0SHong Zhang while (prmap[i] >= owners[proc + 1]) proc++; 1853d6ab1dc0SHong Zhang len_si[proc]++; /* num of rows in Co to be sent to [proc] */ 1854d6ab1dc0SHong Zhang len_s[proc] += coi[i + 1] - coi[i]; 1855d6ab1dc0SHong Zhang } 1856d6ab1dc0SHong Zhang 1857d6ab1dc0SHong Zhang len = 0; /* max length of buf_si[] */ 1858d6ab1dc0SHong Zhang owners_co[0] = 0; 1859d6ab1dc0SHong Zhang for (proc = 0; proc < size; proc++) { 1860d6ab1dc0SHong Zhang owners_co[proc + 1] = owners_co[proc] + len_si[proc]; 1861216f1e5cSPierre Jolivet if (len_s[proc]) { 1862d6ab1dc0SHong Zhang merge->nsend++; 1863d6ab1dc0SHong Zhang len_si[proc] = 2 * (len_si[proc] + 1); 1864d6ab1dc0SHong Zhang len += len_si[proc]; 1865d6ab1dc0SHong Zhang } 1866d6ab1dc0SHong Zhang } 1867d6ab1dc0SHong Zhang 1868d6ab1dc0SHong Zhang /* determine the number and length of messages to receive for coi and coj */ 18699566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 18709566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 1871d6ab1dc0SHong Zhang 1872d6ab1dc0SHong Zhang /* post the Irecv and Isend of coj */ 18739566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 18749566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rwaits)); 187584648c2dSPierre Jolivet PetscCall(PetscMalloc1(merge->nsend, &swaits)); 1876d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1877d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1878d6ab1dc0SHong Zhang i = owners_co[proc]; 18796497c311SBarry Smith PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k)); 1880d6ab1dc0SHong Zhang k++; 1881d6ab1dc0SHong Zhang } 1882d6ab1dc0SHong Zhang 1883d6ab1dc0SHong Zhang /* receives and sends of coj are complete */ 18849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &sstatus)); 1885d6ab1dc0SHong Zhang for (i = 0; i < merge->nrecv; i++) { 1886ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted; 18879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus)); 1888d6ab1dc0SHong Zhang } 18899566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 18909566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus)); 1891d6ab1dc0SHong Zhang 18920acc65b4SHong Zhang /* add received column indices into table to update Armax */ 1893c4762a1bSJed Brown /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */ 18940acc65b4SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 18950acc65b4SHong Zhang Jptr = buf_rj[k]; 1896c76ffc5fSJacob Faibussowitsch for (j = 0; j < merge->len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1)); 18970acc65b4SHong Zhang } 1898eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Armax)); 18990acc65b4SHong Zhang 1900d6ab1dc0SHong Zhang /* send and recv coi */ 19019566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 19029566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &rwaits)); 190384648c2dSPierre Jolivet PetscCall(PetscMalloc1(len, &buf_s)); 1904d6ab1dc0SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 1905d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1906d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1907d6ab1dc0SHong Zhang /* form outgoing message for i-structure: 1908d6ab1dc0SHong Zhang buf_si[0]: nrows to be sent 1909d6ab1dc0SHong Zhang [1:nrows]: row index (global) 1910d6ab1dc0SHong Zhang [nrows+1:2*nrows+1]: i-structure index 1911d6ab1dc0SHong Zhang */ 1912d6ab1dc0SHong Zhang nrows = len_si[proc] / 2 - 1; 1913d6ab1dc0SHong Zhang buf_si_i = buf_si + nrows + 1; 1914d6ab1dc0SHong Zhang buf_si[0] = nrows; 1915d6ab1dc0SHong Zhang buf_si_i[0] = 0; 1916d6ab1dc0SHong Zhang nrows = 0; 1917d6ab1dc0SHong Zhang for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) { 1918d6ab1dc0SHong Zhang nzi = coi[i + 1] - coi[i]; 1919d6ab1dc0SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi; /* i-structure */ 1920d6ab1dc0SHong Zhang buf_si[nrows + 1] = prmap[i] - owners[proc]; /* local row index */ 1921d6ab1dc0SHong Zhang nrows++; 1922d6ab1dc0SHong Zhang } 19236497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k)); 1924d6ab1dc0SHong Zhang k++; 1925d6ab1dc0SHong Zhang buf_si += len_si[proc]; 1926d6ab1dc0SHong Zhang } 1927d6ab1dc0SHong Zhang i = merge->nrecv; 1928d6ab1dc0SHong Zhang while (i--) { 1929ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted; 19309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus)); 1931d6ab1dc0SHong Zhang } 19329566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 19339566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus)); 19349566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 19359566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 19369566063dSJacob Faibussowitsch PetscCall(PetscFree(swaits)); 19379566063dSJacob Faibussowitsch PetscCall(PetscFree(sstatus)); 19389566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 1939d6ab1dc0SHong Zhang 1940d6ab1dc0SHong Zhang /* compute the local portion of C (mpi mat) */ 1941d6ab1dc0SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 19429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pn + 1, &bi)); 1943d6ab1dc0SHong Zhang bi[0] = 0; 1944d6ab1dc0SHong Zhang 1945d6ab1dc0SHong Zhang /* set initial free space to be fill*(nnz(P) + nnz(AP)) */ 1946f91af8c7SBarry Smith nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(pdti[pn], PetscIntSumTruncate(poti[pon], ai[am]))); 19479566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(nnz, &free_space)); 1948d6ab1dc0SHong Zhang current_space = free_space; 1949d6ab1dc0SHong Zhang 19509566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci)); 1951d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { 1952d6ab1dc0SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1953d6ab1dc0SHong Zhang nrows = *buf_ri_k[k]; 1954d6ab1dc0SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 19552d4ee042Sprj- nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure */ 1956d6ab1dc0SHong Zhang } 1957d6ab1dc0SHong Zhang 19589566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk)); 1959d0609cedSBarry Smith MatPreallocateBegin(comm, pn, A->cmap->n, dnz, onz); 1960d6ab1dc0SHong Zhang rmax = 0; 1961d6ab1dc0SHong Zhang for (i = 0; i < pn; i++) { 1962d6ab1dc0SHong Zhang /* add pdt[i,:]*AP into lnk */ 1963d6ab1dc0SHong Zhang pnz = pdti[i + 1] - pdti[i]; 1964d6ab1dc0SHong Zhang ptJ = pdtj + pdti[i]; 1965d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1966d6ab1dc0SHong Zhang row = ptJ[j]; /* row of AP == col of Pt */ 1967d6ab1dc0SHong Zhang anz = ai[row + 1] - ai[row]; 1968d6ab1dc0SHong Zhang Jptr = aj + ai[row]; 1969d6ab1dc0SHong Zhang /* add non-zero cols of AP into the sorted linked list lnk */ 19709566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk)); 1971d6ab1dc0SHong Zhang } 1972d6ab1dc0SHong Zhang 1973d6ab1dc0SHong Zhang /* add received col data into lnk */ 1974d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 1975d6ab1dc0SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 1976d6ab1dc0SHong Zhang nzi = *(nextci[k] + 1) - *nextci[k]; 1977d6ab1dc0SHong Zhang Jptr = buf_rj[k] + *nextci[k]; 19789566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(nzi, Jptr, lnk)); 19799371c9d4SSatish Balay nextrow[k]++; 19809371c9d4SSatish Balay nextci[k]++; 1981d6ab1dc0SHong Zhang } 1982d6ab1dc0SHong Zhang } 19838c78258cSHong Zhang 19848c78258cSHong Zhang /* add missing diagonal entry */ 19858c78258cSHong Zhang if (C->force_diagonals) { 19868c78258cSHong Zhang k = i + owners[rank]; /* column index */ 19879566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1, &k, lnk)); 19888c78258cSHong Zhang } 19898c78258cSHong Zhang 1990d6ab1dc0SHong Zhang nnz = lnk[0]; 1991d6ab1dc0SHong Zhang 1992d6ab1dc0SHong Zhang /* if free space is not available, make more free space */ 1993d6ab1dc0SHong Zhang if (current_space->local_remaining < nnz) { 19949566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), ¤t_space)); 1995d6ab1dc0SHong Zhang nspacedouble++; 1996d6ab1dc0SHong Zhang } 1997d6ab1dc0SHong Zhang /* copy data into free space, then initialize lnk */ 19989566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk)); 19999566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], nnz, current_space->array, dnz, onz)); 20002205254eSKarl Rupp 2001d6ab1dc0SHong Zhang current_space->array += nnz; 2002d6ab1dc0SHong Zhang current_space->local_used += nnz; 2003d6ab1dc0SHong Zhang current_space->local_remaining -= nnz; 20042205254eSKarl Rupp 2005d6ab1dc0SHong Zhang bi[i + 1] = bi[i] + nnz; 2006d6ab1dc0SHong Zhang if (nnz > rmax) rmax = nnz; 2007d6ab1dc0SHong Zhang } 20089566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 2009d6ab1dc0SHong Zhang 201084648c2dSPierre Jolivet PetscCall(PetscMalloc1(bi[pn], &bj)); 20119566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 2012118727c9SMark F. Adams afill_tmp = (PetscReal)bi[pn] / (pdti[pn] + poti[pon] + ai[am] + 1); 2013d6ab1dc0SHong Zhang if (afill_tmp > afill) afill = afill_tmp; 20149566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 2015eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 20169566063dSJacob Faibussowitsch PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj)); 20179566063dSJacob Faibussowitsch PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B, &poti, &potj)); 2018d6ab1dc0SHong Zhang 20194222ddf1SHong Zhang /* create symbolic parallel matrix C - why cannot be assembled in Numeric part */ 20209566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, pn, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE)); 202158b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->cmap->bs, A->cmap->bs)); 20229566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 20239566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 20249566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 2025d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 20269566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(C, 1)); 20279566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 2028d6ab1dc0SHong Zhang for (i = 0; i < pn; i++) { 2029d6ab1dc0SHong Zhang row = i + rstart; 2030d6ab1dc0SHong Zhang nnz = bi[i + 1] - bi[i]; 2031d6ab1dc0SHong Zhang Jptr = bj + bi[i]; 20329566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, nnz, Jptr, NULL, INSERT_VALUES)); 2033d6ab1dc0SHong Zhang } 20349566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 20359566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 20369566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 2037d6ab1dc0SHong Zhang merge->bi = bi; 2038d6ab1dc0SHong Zhang merge->bj = bj; 2039d6ab1dc0SHong Zhang merge->coi = coi; 2040d6ab1dc0SHong Zhang merge->coj = coj; 2041d6ab1dc0SHong Zhang merge->buf_ri = buf_ri; 2042d6ab1dc0SHong Zhang merge->buf_rj = buf_rj; 2043d6ab1dc0SHong Zhang merge->owners_co = owners_co; 2044d6ab1dc0SHong Zhang 20454222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 20461cdffd5eSHong Zhang C->product->data = ap; 2047cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP; 20481cdffd5eSHong Zhang ap->merge = merge; 2049a560ef98SHong Zhang 20504222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ; 2051f96d37fcSHong Zhang 2052f96d37fcSHong Zhang #if defined(PETSC_USE_INFO) 2053f96d37fcSHong Zhang if (bi[pn] != 0) { 20549566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 20559566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n", (double)afill)); 2056f96d37fcSHong Zhang } else { 20579566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 2058f96d37fcSHong Zhang } 2059f96d37fcSHong Zhang #endif 20603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2061f96d37fcSHong Zhang } 20624222ddf1SHong Zhang 2063d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C) 2064d71ae5a4SJacob Faibussowitsch { 20654222ddf1SHong Zhang Mat_Product *product = C->product; 20664222ddf1SHong Zhang Mat A = product->A, B = product->B; 20674222ddf1SHong Zhang PetscReal fill = product->fill; 20684222ddf1SHong Zhang PetscBool flg; 20694222ddf1SHong Zhang 20704222ddf1SHong Zhang PetscFunctionBegin; 20714222ddf1SHong Zhang /* scalable */ 20729566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "scalable", &flg)); 20734222ddf1SHong Zhang if (flg) { 20749566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C)); 20754222ddf1SHong Zhang goto next; 20764222ddf1SHong Zhang } 20774222ddf1SHong Zhang 20784222ddf1SHong Zhang /* nonscalable */ 20799566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "nonscalable", &flg)); 20804222ddf1SHong Zhang if (flg) { 20819566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C)); 20824222ddf1SHong Zhang goto next; 20834222ddf1SHong Zhang } 20844222ddf1SHong Zhang 20854222ddf1SHong Zhang /* matmatmult */ 20869566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "at*b", &flg)); 20874222ddf1SHong Zhang if (flg) { 20884222ddf1SHong Zhang Mat At; 2089cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 20904222ddf1SHong Zhang 20919566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 20929566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At, B, fill, C)); 2093cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data; 20944222ddf1SHong Zhang if (ptap) { 20954222ddf1SHong Zhang ptap->Pt = At; 2096cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP; 20974222ddf1SHong Zhang } 20984222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult; 20994222ddf1SHong Zhang goto next; 21004222ddf1SHong Zhang } 21014222ddf1SHong Zhang 21024e84afc0SStefano Zampini /* backend general code */ 21039566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "backend", &flg)); 21044e84afc0SStefano Zampini if (flg) { 21059566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic_MPIAIJBACKEND(C)); 21063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21074e84afc0SStefano Zampini } 21084e84afc0SStefano Zampini 21094222ddf1SHong Zhang SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type is not supported"); 21104222ddf1SHong Zhang 21114222ddf1SHong Zhang next: 21124222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB; 21133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21144222ddf1SHong Zhang } 21154222ddf1SHong Zhang 21164222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */ 2117d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C) 2118d71ae5a4SJacob Faibussowitsch { 21194222ddf1SHong Zhang Mat_Product *product = C->product; 21204222ddf1SHong Zhang Mat A = product->A, B = product->B; 21214222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 21224e84afc0SStefano Zampini const char *algTypes[5] = {"scalable", "nonscalable", "seqmpi", "backend", "hypre"}; 21234e84afc0SStefano Zampini PetscInt nalg = 5; 21244222ddf1SHong Zhang #else 21259371c9d4SSatish Balay const char *algTypes[4] = { 21269371c9d4SSatish Balay "scalable", 21279371c9d4SSatish Balay "nonscalable", 21289371c9d4SSatish Balay "seqmpi", 21299371c9d4SSatish Balay "backend", 21309371c9d4SSatish Balay }; 21314e84afc0SStefano Zampini PetscInt nalg = 4; 21324222ddf1SHong Zhang #endif 21334222ddf1SHong Zhang PetscInt alg = 1; /* set nonscalable algorithm as default */ 21344222ddf1SHong Zhang PetscBool flg; 21354222ddf1SHong Zhang MPI_Comm comm; 21364222ddf1SHong Zhang 21374222ddf1SHong Zhang PetscFunctionBegin; 21389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 21394222ddf1SHong Zhang 21404222ddf1SHong Zhang /* Set "nonscalable" as default algorithm */ 21419566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 21424222ddf1SHong Zhang if (flg) { 2143835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 21444222ddf1SHong Zhang 21454222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 21464222ddf1SHong Zhang if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */ 21474222ddf1SHong Zhang MatInfo Ainfo, Binfo; 21484222ddf1SHong Zhang PetscInt nz_local; 21494222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 21504222ddf1SHong Zhang 21519566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 21529566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo)); 21534222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated); 21544222ddf1SHong Zhang 21554222ddf1SHong Zhang if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 21565440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm)); 21574222ddf1SHong Zhang 21584222ddf1SHong Zhang if (alg_scalable) { 21594222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 2160835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 21619566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local))); 21624222ddf1SHong Zhang } 21634222ddf1SHong Zhang } 21644222ddf1SHong Zhang } 21654222ddf1SHong Zhang 21664222ddf1SHong Zhang /* Get runtime option */ 21674222ddf1SHong Zhang if (product->api_user) { 2168d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 21699566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2170d0609cedSBarry Smith PetscOptionsEnd(); 21714222ddf1SHong Zhang } else { 2172d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 21739566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2174d0609cedSBarry Smith PetscOptionsEnd(); 21754222ddf1SHong Zhang } 2176835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 21774222ddf1SHong Zhang 21784222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ; 21793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21804222ddf1SHong Zhang } 21814222ddf1SHong Zhang 2182d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C) 2183d71ae5a4SJacob Faibussowitsch { 21848a9c020eSBarry Smith PetscFunctionBegin; 21858a9c020eSBarry Smith PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C)); 21868a9c020eSBarry Smith C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ; 21873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21888a9c020eSBarry Smith } 21898a9c020eSBarry Smith 21904222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */ 2191d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C) 2192d71ae5a4SJacob Faibussowitsch { 21934222ddf1SHong Zhang Mat_Product *product = C->product; 21944222ddf1SHong Zhang Mat A = product->A, B = product->B; 21954e84afc0SStefano Zampini const char *algTypes[4] = {"scalable", "nonscalable", "at*b", "backend"}; 21964e84afc0SStefano Zampini PetscInt nalg = 4; 21974222ddf1SHong Zhang PetscInt alg = 1; /* set default algorithm */ 21984222ddf1SHong Zhang PetscBool flg; 21994222ddf1SHong Zhang MPI_Comm comm; 22004222ddf1SHong Zhang 22014222ddf1SHong Zhang PetscFunctionBegin; 22024222ddf1SHong Zhang /* Check matrix local sizes */ 22039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 22049371c9d4SSatish Balay PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22059371c9d4SSatish Balay A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 22064222ddf1SHong Zhang 22074222ddf1SHong Zhang /* Set default algorithm */ 22089566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 2209835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 22104222ddf1SHong Zhang 22114222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 22124222ddf1SHong Zhang if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */ 22134222ddf1SHong Zhang MatInfo Ainfo, Binfo; 22144222ddf1SHong Zhang PetscInt nz_local; 22154222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 22164222ddf1SHong Zhang 22179566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 22189566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo)); 22194222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated); 22204222ddf1SHong Zhang 22214222ddf1SHong Zhang if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 22225440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm)); 22234222ddf1SHong Zhang 22244222ddf1SHong Zhang if (alg_scalable) { 22254222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 2226835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 22279566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local))); 22284222ddf1SHong Zhang } 22294222ddf1SHong Zhang } 22304222ddf1SHong Zhang 22314222ddf1SHong Zhang /* Get runtime option */ 22324222ddf1SHong Zhang if (product->api_user) { 2233d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat"); 22349566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2235d0609cedSBarry Smith PetscOptionsEnd(); 22364222ddf1SHong Zhang } else { 2237d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat"); 22389566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2239d0609cedSBarry Smith PetscOptionsEnd(); 22404222ddf1SHong Zhang } 2241835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 22424222ddf1SHong Zhang 22434222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ; 22443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22454222ddf1SHong Zhang } 22464222ddf1SHong Zhang 2247d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C) 2248d71ae5a4SJacob Faibussowitsch { 22494222ddf1SHong Zhang Mat_Product *product = C->product; 22504222ddf1SHong Zhang Mat A = product->A, P = product->B; 22514222ddf1SHong Zhang MPI_Comm comm; 22524222ddf1SHong Zhang PetscBool flg; 22534222ddf1SHong Zhang PetscInt alg = 1; /* set default algorithm */ 22544222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE) 22554e84afc0SStefano Zampini const char *algTypes[5] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend"}; 22564222ddf1SHong Zhang PetscInt nalg = 5; 22574e84afc0SStefano Zampini #else 22584e84afc0SStefano Zampini const char *algTypes[6] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend", "hypre"}; 22594e84afc0SStefano Zampini PetscInt nalg = 6; 22604222ddf1SHong Zhang #endif 22614222ddf1SHong Zhang PetscInt pN = P->cmap->N; 22624222ddf1SHong Zhang 22634222ddf1SHong Zhang PetscFunctionBegin; 22644222ddf1SHong Zhang /* Check matrix local sizes */ 22659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 22669371c9d4SSatish Balay PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22679371c9d4SSatish Balay A->rmap->rstart, A->rmap->rend, P->rmap->rstart, P->rmap->rend); 22689371c9d4SSatish Balay PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22699371c9d4SSatish Balay A->cmap->rstart, A->cmap->rend, P->rmap->rstart, P->rmap->rend); 22704222ddf1SHong Zhang 22714222ddf1SHong Zhang /* Set "nonscalable" as default algorithm */ 22729566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 22734222ddf1SHong Zhang if (flg) { 2274835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 22754222ddf1SHong Zhang 22764222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 22774222ddf1SHong Zhang if (pN > 100000) { 22784222ddf1SHong Zhang MatInfo Ainfo, Pinfo; 22794222ddf1SHong Zhang PetscInt nz_local; 22804222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 22814222ddf1SHong Zhang 22829566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 22839566063dSJacob Faibussowitsch PetscCall(MatGetInfo(P, MAT_LOCAL, &Pinfo)); 22844222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated); 22854222ddf1SHong Zhang 22864222ddf1SHong Zhang if (pN > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 22875440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm)); 22884222ddf1SHong Zhang 22894222ddf1SHong Zhang if (alg_scalable) { 22904222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 2291835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 22924222ddf1SHong Zhang } 22934222ddf1SHong Zhang } 22944222ddf1SHong Zhang } 22954222ddf1SHong Zhang 22964222ddf1SHong Zhang /* Get runtime option */ 22974222ddf1SHong Zhang if (product->api_user) { 2298d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 22999566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg)); 2300d0609cedSBarry Smith PetscOptionsEnd(); 23014222ddf1SHong Zhang } else { 2302d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 23039566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg)); 2304d0609cedSBarry Smith PetscOptionsEnd(); 23054222ddf1SHong Zhang } 2306835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 23074222ddf1SHong Zhang 23084222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ; 23093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23104222ddf1SHong Zhang } 23114222ddf1SHong Zhang 2312d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C) 2313d71ae5a4SJacob Faibussowitsch { 23144222ddf1SHong Zhang Mat_Product *product = C->product; 23154222ddf1SHong Zhang Mat A = product->A, R = product->B; 23164222ddf1SHong Zhang 23174222ddf1SHong Zhang PetscFunctionBegin; 23184222ddf1SHong Zhang /* Check matrix local sizes */ 23199371c9d4SSatish Balay PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->n, 23209371c9d4SSatish Balay A->rmap->n, R->rmap->n, R->cmap->n); 23214222ddf1SHong Zhang 23224222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ; 23233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23244222ddf1SHong Zhang } 23254222ddf1SHong Zhang 23264222ddf1SHong Zhang /* 23274222ddf1SHong Zhang Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm 23284222ddf1SHong Zhang */ 2329d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C) 2330d71ae5a4SJacob Faibussowitsch { 23314222ddf1SHong Zhang Mat_Product *product = C->product; 23324222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 23334222ddf1SHong Zhang PetscInt alg = 1; /* default algorithm */ 23344222ddf1SHong Zhang const char *algTypes[3] = {"scalable", "nonscalable", "seqmpi"}; 23354222ddf1SHong Zhang PetscInt nalg = 3; 23364222ddf1SHong Zhang 23374222ddf1SHong Zhang PetscFunctionBegin; 23384222ddf1SHong Zhang /* Set default algorithm */ 23399566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 2340835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 23414222ddf1SHong Zhang 23424222ddf1SHong Zhang /* Get runtime option */ 23434222ddf1SHong Zhang if (product->api_user) { 2344d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat"); 23459566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2346d0609cedSBarry Smith PetscOptionsEnd(); 23474222ddf1SHong Zhang } else { 2348d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat"); 23499566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg)); 2350d0609cedSBarry Smith PetscOptionsEnd(); 23514222ddf1SHong Zhang } 2352835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 23534222ddf1SHong Zhang 23544222ddf1SHong Zhang C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ; 23554222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABC; 23563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23574222ddf1SHong Zhang } 23584222ddf1SHong Zhang 2359d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C) 2360d71ae5a4SJacob Faibussowitsch { 23614222ddf1SHong Zhang Mat_Product *product = C->product; 23624222ddf1SHong Zhang 23634222ddf1SHong Zhang PetscFunctionBegin; 23644222ddf1SHong Zhang switch (product->type) { 2365d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2366d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C)); 2367d71ae5a4SJacob Faibussowitsch break; 2368d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2369d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C)); 2370d71ae5a4SJacob Faibussowitsch break; 2371d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2372d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C)); 2373d71ae5a4SJacob Faibussowitsch break; 2374d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 2375d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C)); 2376d71ae5a4SJacob Faibussowitsch break; 2377d71ae5a4SJacob Faibussowitsch case MATPRODUCT_RARt: 2378d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C)); 2379d71ae5a4SJacob Faibussowitsch break; 2380d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABC: 2381d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C)); 2382d71ae5a4SJacob Faibussowitsch break; 2383d71ae5a4SJacob Faibussowitsch default: 2384d71ae5a4SJacob Faibussowitsch break; 23854222ddf1SHong Zhang } 23863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23874222ddf1SHong Zhang } 2388