1be1d678aSKris Buschelman 22499ec78SHong Zhang /* 32499ec78SHong Zhang Defines matrix-matrix product routines for pairs of MPIAIJ matrices 42499ec78SHong Zhang C = A * B 52499ec78SHong Zhang */ 6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 8c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 9c6db04a5SJed Brown #include <petscbt.h> 10c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> 112499ec78SHong Zhang 127c2e2f26SHong Zhang /* #define DEBUG_MATMATMULT */ 137c2e2f26SHong Zhang 142499ec78SHong Zhang #undef __FUNCT__ 152499ec78SHong Zhang #define __FUNCT__ "MatMatMult_MPIAIJ_MPIAIJ" 162499ec78SHong Zhang PetscErrorCode MatMatMult_MPIAIJ_MPIAIJ(Mat A,Mat B,MatReuse scall,PetscReal fill, Mat *C) 172499ec78SHong Zhang { 182499ec78SHong Zhang PetscErrorCode ierr; 192499ec78SHong Zhang 202499ec78SHong Zhang PetscFunctionBegin; 212499ec78SHong Zhang if (scall == MAT_INITIAL_MATRIX){ 22598bc09dSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 23a1a4e84aSHong Zhang ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C);CHKERRQ(ierr); 24598bc09dSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 252499ec78SHong Zhang } 26598bc09dSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 27598bc09dSHong Zhang ierr = (*(*C)->ops->matmultnumeric)(A,B,*C);CHKERRQ(ierr); 28598bc09dSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 292499ec78SHong Zhang PetscFunctionReturn(0); 302499ec78SHong Zhang } 312499ec78SHong Zhang 32f33d1a9aSHong Zhang #undef __FUNCT__ 33776b82aeSLisandro Dalcin #define __FUNCT__ "PetscContainerDestroy_Mat_MatMatMultMPI" 34776b82aeSLisandro Dalcin PetscErrorCode PetscContainerDestroy_Mat_MatMatMultMPI(void *ptr) 35f33d1a9aSHong Zhang { 36f33d1a9aSHong Zhang PetscErrorCode ierr; 379649163dSHong Zhang Mat_MatMatMultMPI *mult=(Mat_MatMatMultMPI*)ptr; 38f33d1a9aSHong Zhang 39f33d1a9aSHong Zhang PetscFunctionBegin; 406bf464f9SBarry Smith ierr = ISDestroy(&mult->isrowa);CHKERRQ(ierr); 416bf464f9SBarry Smith ierr = ISDestroy(&mult->isrowb);CHKERRQ(ierr); 426bf464f9SBarry Smith ierr = ISDestroy(&mult->iscolb);CHKERRQ(ierr); 436bf464f9SBarry Smith ierr = MatDestroy(&mult->C_seq);CHKERRQ(ierr); 446bf464f9SBarry Smith ierr = MatDestroy(&mult->A_loc);CHKERRQ(ierr); 456bf464f9SBarry Smith ierr = MatDestroy(&mult->B_seq);CHKERRQ(ierr); 46f33d1a9aSHong Zhang ierr = PetscFree(mult);CHKERRQ(ierr); 47f33d1a9aSHong Zhang PetscFunctionReturn(0); 48f33d1a9aSHong Zhang } 49f33d1a9aSHong Zhang 50598bc09dSHong Zhang #undef __FUNCT__ 51a1a4e84aSHong Zhang #define __FUNCT__ "MatDestroy_MPIAIJ_MatMatMult" 52a1a4e84aSHong Zhang PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(Mat A) 53598bc09dSHong Zhang { 54598bc09dSHong Zhang PetscErrorCode ierr; 55598bc09dSHong Zhang Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data; 56598bc09dSHong Zhang Mat_PtAPMPI *ptap=a->ptap; 57598bc09dSHong Zhang 58598bc09dSHong Zhang PetscFunctionBegin; 59598bc09dSHong Zhang ierr = PetscFree2(ptap->startsj,ptap->startsj_r);CHKERRQ(ierr); 60598bc09dSHong Zhang ierr = PetscFree(ptap->bufa);CHKERRQ(ierr); 61a1a4e84aSHong Zhang ierr = MatDestroy(&ptap->P_loc);CHKERRQ(ierr); 62a1a4e84aSHong Zhang ierr = MatDestroy(&ptap->P_oth);CHKERRQ(ierr); 63a1a4e84aSHong Zhang ierr = PetscFree(ptap->api);CHKERRQ(ierr); 64a1a4e84aSHong Zhang ierr = PetscFree(ptap->apj);CHKERRQ(ierr); 65598bc09dSHong Zhang ierr = PetscFree(ptap->apa);CHKERRQ(ierr); 66598bc09dSHong Zhang ierr = ptap->destroy(A);CHKERRQ(ierr); 67598bc09dSHong Zhang ierr = PetscFree(ptap);CHKERRQ(ierr); 68598bc09dSHong Zhang PetscFunctionReturn(0); 69598bc09dSHong Zhang } 70598bc09dSHong Zhang 712499ec78SHong Zhang #undef __FUNCT__ 72a1a4e84aSHong Zhang #define __FUNCT__ "MatDestroy_MPIAIJ_MatMatMult_32" 73a1a4e84aSHong Zhang PetscErrorCode MatDestroy_MPIAIJ_MatMatMult_32(Mat A) 742499ec78SHong Zhang { 752499ec78SHong Zhang PetscErrorCode ierr; 76776b82aeSLisandro Dalcin PetscContainer container; 779649163dSHong Zhang Mat_MatMatMultMPI *mult=PETSC_NULL; 782499ec78SHong Zhang 792499ec78SHong Zhang PetscFunctionBegin; 809649163dSHong Zhang ierr = PetscObjectQuery((PetscObject)A,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr); 81bf0cc555SLisandro Dalcin if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit"); 82776b82aeSLisandro Dalcin ierr = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr); 83dce485f0SBarry Smith A->ops->destroy = mult->destroy; 84bf0cc555SLisandro Dalcin A->ops->duplicate = mult->duplicate; 85bf0cc555SLisandro Dalcin if (A->ops->destroy) { 86992edd73SBarry Smith ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 87bf0cc555SLisandro Dalcin } 88bf0cc555SLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"Mat_MatMatMultMPI",0);CHKERRQ(ierr); 892499ec78SHong Zhang PetscFunctionReturn(0); 902499ec78SHong Zhang } 912499ec78SHong Zhang 922499ec78SHong Zhang #undef __FUNCT__ 93a1a4e84aSHong Zhang #define __FUNCT__ "MatDuplicate_MPIAIJ_MatMatMult_32" 94a1a4e84aSHong Zhang PetscErrorCode MatDuplicate_MPIAIJ_MatMatMult_32(Mat A, MatDuplicateOption op, Mat *M) 95b9c92825SBarry Smith { 96abf897f8SHong Zhang PetscErrorCode ierr; 97abf897f8SHong Zhang Mat_MatMatMultMPI *mult; 98776b82aeSLisandro Dalcin PetscContainer container; 99abf897f8SHong Zhang 100abf897f8SHong Zhang PetscFunctionBegin; 101abf897f8SHong Zhang ierr = PetscObjectQuery((PetscObject)A,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr); 102bf0cc555SLisandro Dalcin if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit"); 103776b82aeSLisandro Dalcin ierr = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr); 1045c088420SHong Zhang /* Note: the container is not duplicated, because it requires deep copying of 1055c088420SHong Zhang several large data sets (see PetscContainerDestroy_Mat_MatMatMultMPI()). 1065c088420SHong Zhang These data sets are only used for repeated calling of MatMatMultNumeric(). 1075c088420SHong Zhang *M is unlikely being used in this way. Thus we create *M with pure mpiaij format */ 108dce485f0SBarry Smith ierr = (*mult->duplicate)(A,op,M);CHKERRQ(ierr); 109dce485f0SBarry Smith (*M)->ops->destroy = mult->destroy; /* = MatDestroy_MPIAIJ, *M doesn't duplicate A's container! */ 110dce485f0SBarry Smith (*M)->ops->duplicate = mult->duplicate; /* = MatDuplicate_MPIAIJ */ 111abf897f8SHong Zhang PetscFunctionReturn(0); 112abf897f8SHong Zhang } 113abf897f8SHong Zhang 114abf897f8SHong Zhang #undef __FUNCT__ 115a1a4e84aSHong Zhang #define __FUNCT__ "MatDuplicate_MPIAIJ_MatMatMult" 116a1a4e84aSHong Zhang PetscErrorCode MatDuplicate_MPIAIJ_MatMatMult(Mat A, MatDuplicateOption op, Mat *M) 1174ae0847bSHong Zhang { 1184ae0847bSHong Zhang PetscErrorCode ierr; 1194ae0847bSHong Zhang Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data; 1204ae0847bSHong Zhang Mat_PtAPMPI *ptap=a->ptap; 1214ae0847bSHong Zhang 1224ae0847bSHong Zhang PetscFunctionBegin; 1234ae0847bSHong Zhang ierr = (*ptap->duplicate)(A,op,M);CHKERRQ(ierr); 1244ae0847bSHong Zhang (*M)->ops->destroy = ptap->destroy; /* = MatDestroy_MPIAIJ, *M doesn't duplicate A's special structure! */ 1254ae0847bSHong Zhang (*M)->ops->duplicate = ptap->duplicate; /* = MatDuplicate_MPIAIJ */ 1264ae0847bSHong Zhang PetscFunctionReturn(0); 1274ae0847bSHong Zhang } 1284ae0847bSHong Zhang 1294ae0847bSHong Zhang #undef __FUNCT__ 130a1a4e84aSHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ" 131a1a4e84aSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A,Mat P,Mat C) 132598bc09dSHong Zhang { 133598bc09dSHong Zhang PetscErrorCode ierr; 1344ae0847bSHong Zhang Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data; 135598bc09dSHong Zhang Mat_SeqAIJ *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data; 136598bc09dSHong Zhang Mat_SeqAIJ *cd=(Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data; 137598bc09dSHong Zhang PetscInt *adi=ad->i,*adj,*aoi=ao->i,*aoj; 138598bc09dSHong Zhang PetscScalar *ada,*aoa,*cda=cd->a,*coa=co->a; 139598bc09dSHong Zhang Mat_SeqAIJ *p_loc,*p_oth; 140598bc09dSHong Zhang PetscInt *pi_loc,*pj_loc,*pi_oth,*pj_oth,*pj; 141598bc09dSHong Zhang PetscScalar *pa_loc,*pa_oth,*pa,*apa,valtmp,*ca; 142598bc09dSHong Zhang PetscInt cm=C->rmap->n,anz,pnz; 143598bc09dSHong Zhang Mat_PtAPMPI *ptap=c->ptap; 14465a57a32SSean Farley PetscInt *api,*apj,*apJ,i,j,k,row; 1454ae0847bSHong Zhang PetscInt rstart=C->rmap->rstart,cstart=C->cmap->rstart; 146598bc09dSHong Zhang PetscInt cdnz,conz,k0,k1; 1477c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT) 1487c2e2f26SHong Zhang PetscMPIInt rank=a->rank; 1497c2e2f26SHong Zhang #endif 150598bc09dSHong Zhang 151598bc09dSHong Zhang PetscFunctionBegin; 1527c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT) 1537c2e2f26SHong Zhang if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultNumeric_MPIAIJ_MPIAIJ()...\n",rank); 1547c2e2f26SHong Zhang #endif 1557c2e2f26SHong Zhang 156a1a4e84aSHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */ 157598bc09dSHong Zhang /*-----------------------------------------------------*/ 158a1a4e84aSHong Zhang /* update numerical values of P_oth and P_loc */ 159a1a4e84aSHong Zhang ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr); 160a1a4e84aSHong Zhang ierr = MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc);CHKERRQ(ierr); 161598bc09dSHong Zhang 162598bc09dSHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 163598bc09dSHong Zhang /*----------------------------------------------------------*/ 164598bc09dSHong Zhang /* get data from symbolic products */ 165a1a4e84aSHong Zhang p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data; 166a1a4e84aSHong Zhang p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data; 167598bc09dSHong Zhang pi_loc=p_loc->i; pj_loc=p_loc->j; pa_loc=p_loc->a; 168598bc09dSHong Zhang pi_oth=p_oth->i; pj_oth=p_oth->j; pa_oth=p_oth->a; 169598bc09dSHong Zhang 170598bc09dSHong Zhang /* get apa for storing dense row A[i,:]*P */ 171598bc09dSHong Zhang apa = ptap->apa; 172598bc09dSHong Zhang 173598bc09dSHong Zhang for (i=0; i<cm; i++) { 174598bc09dSHong Zhang /* diagonal portion of A */ 175598bc09dSHong Zhang anz = adi[i+1] - adi[i]; 176598bc09dSHong Zhang adj = ad->j + adi[i]; 177598bc09dSHong Zhang ada = ad->a + adi[i]; 178598bc09dSHong Zhang for (j=0; j<anz; j++) { 179598bc09dSHong Zhang row = adj[j]; 180598bc09dSHong Zhang pnz = pi_loc[row+1] - pi_loc[row]; 181598bc09dSHong Zhang pj = pj_loc + pi_loc[row]; 182598bc09dSHong Zhang pa = pa_loc + pi_loc[row]; 183598bc09dSHong Zhang 184598bc09dSHong Zhang /* perform dense axpy */ 185598bc09dSHong Zhang valtmp = ada[j]; 186598bc09dSHong Zhang for (k=0; k<pnz; k++){ 187598bc09dSHong Zhang apa[pj[k]] += valtmp*pa[k]; 188598bc09dSHong Zhang } 189598bc09dSHong Zhang ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr); 190598bc09dSHong Zhang } 191598bc09dSHong Zhang 192598bc09dSHong Zhang /* off-diagonal portion of A */ 193598bc09dSHong Zhang anz = aoi[i+1] - aoi[i]; 194598bc09dSHong Zhang aoj = ao->j + aoi[i]; 195598bc09dSHong Zhang aoa = ao->a + aoi[i]; 196598bc09dSHong Zhang for (j=0; j<anz; j++) { 197598bc09dSHong Zhang row = aoj[j]; 198598bc09dSHong Zhang pnz = pi_oth[row+1] - pi_oth[row]; 199598bc09dSHong Zhang pj = pj_oth + pi_oth[row]; 200598bc09dSHong Zhang pa = pa_oth + pi_oth[row]; 201598bc09dSHong Zhang 202598bc09dSHong Zhang /* perform dense axpy */ 203598bc09dSHong Zhang valtmp = aoa[j]; 204598bc09dSHong Zhang for (k=0; k<pnz; k++){ 205598bc09dSHong Zhang apa[pj[k]] += valtmp*pa[k]; 206598bc09dSHong Zhang } 207598bc09dSHong Zhang ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr); 208598bc09dSHong Zhang } 209598bc09dSHong Zhang 210598bc09dSHong Zhang /* set values in C */ 211598bc09dSHong Zhang row = rstart + i; 212a1a4e84aSHong Zhang api = ptap->api; 213a1a4e84aSHong Zhang apj = ptap->apj; 214598bc09dSHong Zhang apJ = apj + api[i]; 215598bc09dSHong Zhang cdnz = cd->i[i+1] - cd->i[i]; 216598bc09dSHong Zhang conz = co->i[i+1] - co->i[i]; 217598bc09dSHong Zhang 218598bc09dSHong Zhang /* 1st off-diagoanl part of C */ 219598bc09dSHong Zhang ca = coa + co->i[i]; 220598bc09dSHong Zhang k = 0; 221598bc09dSHong Zhang for (k0=0; k0<conz; k0++){ 222598bc09dSHong Zhang if (apJ[k] >= cstart) break; 223598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 224598bc09dSHong Zhang apa[apJ[k]] = 0.0; 225598bc09dSHong Zhang k++; 226598bc09dSHong Zhang } 227598bc09dSHong Zhang 228598bc09dSHong Zhang /* diagonal part of C */ 229598bc09dSHong Zhang ca = cda + cd->i[i]; 230598bc09dSHong Zhang for (k1=0; k1<cdnz; k1++){ 231598bc09dSHong Zhang ca[k1] = apa[apJ[k]]; 232598bc09dSHong Zhang apa[apJ[k]] = 0.0; 233598bc09dSHong Zhang k++; 234598bc09dSHong Zhang } 235598bc09dSHong Zhang 236598bc09dSHong Zhang /* 2nd off-diagoanl part of C */ 237598bc09dSHong Zhang ca = coa + co->i[i]; 238598bc09dSHong Zhang for (; k0<conz; k0++){ 239598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 240598bc09dSHong Zhang apa[apJ[k]] = 0.0; 241598bc09dSHong Zhang k++; 242598bc09dSHong Zhang } 243598bc09dSHong Zhang } 244598bc09dSHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 245598bc09dSHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 246598bc09dSHong Zhang PetscFunctionReturn(0); 247598bc09dSHong Zhang } 248598bc09dSHong Zhang 249598bc09dSHong Zhang #undef __FUNCT__ 250a1a4e84aSHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ" 251a1a4e84aSHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A,Mat P,PetscReal fill,Mat *C) 252598bc09dSHong Zhang { 253598bc09dSHong Zhang PetscErrorCode ierr; 254598bc09dSHong Zhang MPI_Comm comm=((PetscObject)A)->comm; 255bfcd1a73SHong Zhang Mat Cmpi; 256598bc09dSHong Zhang Mat_PtAPMPI *ptap; 257598bc09dSHong Zhang PetscFreeSpaceList free_space=PETSC_NULL,current_space=PETSC_NULL; 2584ae0847bSHong Zhang Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data,*c; 259bfcd1a73SHong Zhang Mat_SeqAIJ *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth; 2604ae0847bSHong Zhang PetscInt *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz; 2614ae0847bSHong Zhang PetscInt *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart; 262bfcd1a73SHong Zhang PetscInt nlnk,*lnk,i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi; 263bfcd1a73SHong Zhang PetscInt am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n; 264598bc09dSHong Zhang PetscBT lnkbt; 265598bc09dSHong Zhang PetscScalar *apa; 266bfcd1a73SHong Zhang PetscReal afill; 267a1a4e84aSHong Zhang PetscBool matmatmult_old=PETSC_FALSE; 2687c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT) 2697c2e2f26SHong Zhang PetscMPIInt rank=a->rank; 2707c2e2f26SHong Zhang #endif 271598bc09dSHong Zhang 272598bc09dSHong Zhang PetscFunctionBegin; 273a1a4e84aSHong Zhang if (A->cmap->rstart != P->rmap->rstart || A->cmap->rend != P->rmap->rend){ 274a1a4e84aSHong Zhang SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap->rstart,A->cmap->rend,P->rmap->rstart,P->rmap->rend); 275a1a4e84aSHong Zhang } 276a1a4e84aSHong Zhang ierr = PetscOptionsGetBool(PETSC_NULL,"-matmatmult_old",&matmatmult_old,PETSC_NULL);CHKERRQ(ierr); 277a1a4e84aSHong Zhang if (matmatmult_old){ 278a1a4e84aSHong Zhang ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ_32(A,P,fill,C);;CHKERRQ(ierr); 279a1a4e84aSHong Zhang PetscFunctionReturn(0); 280a1a4e84aSHong Zhang } 281a1a4e84aSHong Zhang 2827c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT) 2837c2e2f26SHong Zhang if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultSymbolic_MPIAIJ_MPIAIJ()...\n",rank); 2847c2e2f26SHong Zhang #endif 2857c2e2f26SHong Zhang 286598bc09dSHong Zhang /* create struct Mat_PtAPMPI and attached it to C later */ 287598bc09dSHong Zhang ierr = PetscNew(Mat_PtAPMPI,&ptap);CHKERRQ(ierr); 288598bc09dSHong Zhang 289598bc09dSHong Zhang /* malloc apa to store dense row A[i,:]*P */ 290bfcd1a73SHong Zhang ierr = PetscMalloc(pN*sizeof(PetscScalar),&apa);CHKERRQ(ierr); 291bfcd1a73SHong Zhang ierr = PetscMemzero(apa,pN*sizeof(PetscScalar));CHKERRQ(ierr); 292598bc09dSHong Zhang ptap->apa = apa; 293598bc09dSHong Zhang 294598bc09dSHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 295a1a4e84aSHong Zhang ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr); 296598bc09dSHong Zhang /* get P_loc by taking all local rows of P */ 297a1a4e84aSHong Zhang ierr = MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc);CHKERRQ(ierr); 298598bc09dSHong Zhang 299a1a4e84aSHong Zhang p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data; 300a1a4e84aSHong Zhang p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data; 301598bc09dSHong Zhang pi_loc = p_loc->i; pj_loc = p_loc->j; 302598bc09dSHong Zhang pi_oth = p_oth->i; pj_oth = p_oth->j; 303598bc09dSHong Zhang 304598bc09dSHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 305598bc09dSHong Zhang /*-------------------------------------------------------------------*/ 306598bc09dSHong Zhang ierr = PetscMalloc((am+2)*sizeof(PetscInt),&api);CHKERRQ(ierr); 307a1a4e84aSHong Zhang ptap->api = api; 308598bc09dSHong Zhang api[0] = 0; 309598bc09dSHong Zhang 310598bc09dSHong Zhang /* create and initialize a linked list */ 311598bc09dSHong Zhang nlnk = pN+1; 312598bc09dSHong Zhang ierr = PetscLLCreate(pN,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr); 313598bc09dSHong Zhang 314bfcd1a73SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 315bfcd1a73SHong Zhang ierr = PetscFreeSpaceGet((PetscInt)(fill*(adi[am]+aoi[am]+pi_loc[pm])),&free_space);CHKERRQ(ierr); 316598bc09dSHong Zhang current_space = free_space; 317598bc09dSHong Zhang 318598bc09dSHong Zhang ierr = MatPreallocateInitialize(comm,am,pn,dnz,onz);CHKERRQ(ierr); 319598bc09dSHong Zhang for (i=0; i<am; i++) { 320598bc09dSHong Zhang apnz = 0; 321598bc09dSHong Zhang /* diagonal portion of A */ 322598bc09dSHong Zhang nzi = adi[i+1] - adi[i]; 323598bc09dSHong Zhang for (j=0; j<nzi; j++){ 324598bc09dSHong Zhang row = *adj++; 325598bc09dSHong Zhang pnz = pi_loc[row+1] - pi_loc[row]; 326598bc09dSHong Zhang Jptr = pj_loc + pi_loc[row]; 327598bc09dSHong Zhang /* add non-zero cols of P into the sorted linked list lnk */ 328dadf0e6bSHong Zhang ierr = PetscLLAddSorted(pnz,Jptr,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr); 329598bc09dSHong Zhang apnz += nlnk; 330598bc09dSHong Zhang } 331598bc09dSHong Zhang /* off-diagonal portion of A */ 332598bc09dSHong Zhang nzi = aoi[i+1] - aoi[i]; 333598bc09dSHong Zhang for (j=0; j<nzi; j++){ 334598bc09dSHong Zhang row = *aoj++; 335598bc09dSHong Zhang pnz = pi_oth[row+1] - pi_oth[row]; 336598bc09dSHong Zhang Jptr = pj_oth + pi_oth[row]; 337dadf0e6bSHong Zhang ierr = PetscLLAddSorted(pnz,Jptr,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr); 338598bc09dSHong Zhang apnz += nlnk; 339598bc09dSHong Zhang } 340598bc09dSHong Zhang 341598bc09dSHong Zhang api[i+1] = api[i] + apnz; 342598bc09dSHong Zhang 343598bc09dSHong Zhang /* if free space is not available, double the total space in the list */ 344598bc09dSHong Zhang if (current_space->local_remaining<apnz) { 345598bc09dSHong Zhang ierr = PetscFreeSpaceGet(apnz+current_space->total_array_size,¤t_space);CHKERRQ(ierr); 346598bc09dSHong Zhang nspacedouble++; 347598bc09dSHong Zhang } 348598bc09dSHong Zhang 349598bc09dSHong Zhang /* Copy data into free space, then initialize lnk */ 350598bc09dSHong Zhang ierr = PetscLLClean(pN,pN,apnz,lnk,current_space->array,lnkbt);CHKERRQ(ierr); 351598bc09dSHong Zhang ierr = MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz);CHKERRQ(ierr); 352598bc09dSHong Zhang current_space->array += apnz; 353598bc09dSHong Zhang current_space->local_used += apnz; 354598bc09dSHong Zhang current_space->local_remaining -= apnz; 355598bc09dSHong Zhang } 356598bc09dSHong Zhang 357598bc09dSHong Zhang /* Allocate space for apj, initialize apj, and */ 358598bc09dSHong Zhang /* destroy list of free space and other temporary array(s) */ 359a1a4e84aSHong Zhang ierr = PetscMalloc((api[am]+1)*sizeof(PetscInt),&ptap->apj);CHKERRQ(ierr); 360a1a4e84aSHong Zhang apj = ptap->apj; 361a1a4e84aSHong Zhang ierr = PetscFreeSpaceContiguous(&free_space,ptap->apj);CHKERRQ(ierr); 362598bc09dSHong Zhang ierr = PetscLLDestroy(lnk,lnkbt);CHKERRQ(ierr); 363598bc09dSHong Zhang 364bfcd1a73SHong Zhang /* create and assemble symbolic parallel matrix Cmpi */ 365598bc09dSHong Zhang /*----------------------------------------------------*/ 366bfcd1a73SHong Zhang ierr = MatCreate(comm,&Cmpi);CHKERRQ(ierr); 367bfcd1a73SHong Zhang ierr = MatSetSizes(Cmpi,am,pn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 368bfcd1a73SHong Zhang ierr = MatSetType(Cmpi,MATMPIAIJ);CHKERRQ(ierr); 369bfcd1a73SHong Zhang ierr = MatMPIAIJSetPreallocation(Cmpi,0,dnz,0,onz);CHKERRQ(ierr); 370598bc09dSHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 371bfcd1a73SHong Zhang ierr = MatSetBlockSize(Cmpi,1);CHKERRQ(ierr); 372598bc09dSHong Zhang for (i=0; i<am; i++){ 373598bc09dSHong Zhang row = i + rstart; 374598bc09dSHong Zhang apnz = api[i+1] - api[i]; 375bfcd1a73SHong Zhang ierr = MatSetValues(Cmpi,1,&row,apnz,apj,apa,INSERT_VALUES);CHKERRQ(ierr); 376598bc09dSHong Zhang apj += apnz; 377598bc09dSHong Zhang } 378bfcd1a73SHong Zhang ierr = MatAssemblyBegin(Cmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 379bfcd1a73SHong Zhang ierr = MatAssemblyEnd(Cmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 380598bc09dSHong Zhang 381bfcd1a73SHong Zhang ptap->destroy = Cmpi->ops->destroy; 382bfcd1a73SHong Zhang ptap->duplicate = Cmpi->ops->duplicate; 383bfcd1a73SHong Zhang Cmpi->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ; 384bfcd1a73SHong Zhang Cmpi->ops->destroy = MatDestroy_MPIAIJ_MatMatMult; 385bfcd1a73SHong Zhang Cmpi->ops->duplicate = MatDuplicate_MPIAIJ_MatMatMult; 386598bc09dSHong Zhang 387bfcd1a73SHong Zhang /* attach the supporting struct to Cmpi for reuse */ 388bfcd1a73SHong Zhang c = (Mat_MPIAIJ*)Cmpi->data; 389598bc09dSHong Zhang c->ptap = ptap; 390598bc09dSHong Zhang 391bfcd1a73SHong Zhang *C = Cmpi; 392bfcd1a73SHong Zhang 393bfcd1a73SHong Zhang /* set MatInfo */ 394bfcd1a73SHong Zhang afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]) + 1.e-5; 395bfcd1a73SHong Zhang if (afill < 1.0) afill = 1.0; 396bfcd1a73SHong Zhang Cmpi->info.mallocs = nspacedouble; 397bfcd1a73SHong Zhang Cmpi->info.fill_ratio_given = fill; 398bfcd1a73SHong Zhang Cmpi->info.fill_ratio_needed = afill; 399bfcd1a73SHong Zhang 400bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO) 401bfcd1a73SHong Zhang if (api[am]) { 402bfcd1a73SHong Zhang ierr = PetscInfo3(Cmpi,"Reallocs %D; Fill ratio: given %G needed %G.\n",nspacedouble,fill,afill);CHKERRQ(ierr); 403bfcd1a73SHong Zhang ierr = PetscInfo1(Cmpi,"Use MatMatMult(A,B,MatReuse,%G,&C) for best performance.;\n",afill);CHKERRQ(ierr); 404bfcd1a73SHong Zhang } else { 405bfcd1a73SHong Zhang ierr = PetscInfo(Cmpi,"Empty matrix product\n");CHKERRQ(ierr); 406bfcd1a73SHong Zhang } 407bfcd1a73SHong Zhang #endif 408598bc09dSHong Zhang PetscFunctionReturn(0); 409598bc09dSHong Zhang } 410598bc09dSHong Zhang 411a1a4e84aSHong Zhang /* implementation used in PETSc-3.2 */ 412a1a4e84aSHong Zhang /* This routine is called ONLY in the case of reusing previously computed symbolic C */ 413598bc09dSHong Zhang #undef __FUNCT__ 414a1a4e84aSHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ_32" 415a1a4e84aSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_32(Mat A,Mat B,Mat C) 416a1a4e84aSHong Zhang { 417a1a4e84aSHong Zhang PetscErrorCode ierr; 418a1a4e84aSHong Zhang Mat *seq; 419a1a4e84aSHong Zhang Mat_MatMatMultMPI *mult; 420a1a4e84aSHong Zhang PetscContainer container; 421a1a4e84aSHong Zhang 422a1a4e84aSHong Zhang PetscFunctionBegin; 4237c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT) 4247c2e2f26SHong Zhang PetscMPIInt rank; 4257c2e2f26SHong Zhang ierr = MPI_Comm_rank(((PetscObject)C)->comm,&rank);CHKERRQ(ierr); 4267c2e2f26SHong Zhang if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultNumeric_MPIAIJ_MPIAIJ_32()...\n",rank); 4277c2e2f26SHong Zhang #endif 428a1a4e84aSHong Zhang ierr = PetscObjectQuery((PetscObject)C,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr); 429a1a4e84aSHong Zhang if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit"); 430a1a4e84aSHong Zhang ierr = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr); 431a1a4e84aSHong Zhang seq = &mult->B_seq; 432a1a4e84aSHong Zhang ierr = MatGetSubMatrices(B,1,&mult->isrowb,&mult->iscolb,MAT_REUSE_MATRIX,&seq);CHKERRQ(ierr); 433a1a4e84aSHong Zhang mult->B_seq = *seq; 434a1a4e84aSHong Zhang 435a1a4e84aSHong Zhang seq = &mult->A_loc; 436a1a4e84aSHong Zhang ierr = MatGetSubMatrices(A,1,&mult->isrowa,&mult->isrowb,MAT_REUSE_MATRIX,&seq);CHKERRQ(ierr); 437a1a4e84aSHong Zhang mult->A_loc = *seq; 438a1a4e84aSHong Zhang 439a1a4e84aSHong Zhang ierr = MatMatMultNumeric_SeqAIJ_SeqAIJ_SparseAxpy(mult->A_loc,mult->B_seq,mult->C_seq);CHKERRQ(ierr); 440a1a4e84aSHong Zhang 441a1a4e84aSHong Zhang ierr = PetscObjectReference((PetscObject)mult->C_seq);CHKERRQ(ierr); 442a1a4e84aSHong Zhang ierr = MatMerge(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 443a1a4e84aSHong Zhang PetscFunctionReturn(0); 444a1a4e84aSHong Zhang } 445a1a4e84aSHong Zhang 4467c2e2f26SHong Zhang /* numeric product is computed as well */ 447a1a4e84aSHong Zhang #undef __FUNCT__ 448a1a4e84aSHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ_32" 449a1a4e84aSHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_32(Mat A,Mat B,PetscReal fill,Mat *C) 4502499ec78SHong Zhang { 4512499ec78SHong Zhang PetscErrorCode ierr; 4522499ec78SHong Zhang Mat_MatMatMultMPI *mult; 453776b82aeSLisandro Dalcin PetscContainer container; 454d5821860SHong Zhang Mat AB,*seq; 455d5821860SHong Zhang Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data; 456d5821860SHong Zhang PetscInt *idx,i,start,ncols,nzA,nzB,*cmap,imark; 4577c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT) 4587c2e2f26SHong Zhang PetscMPIInt rank=a->rank; 4597c2e2f26SHong Zhang #endif 4602499ec78SHong Zhang 4612499ec78SHong Zhang PetscFunctionBegin; 4627c2e2f26SHong Zhang #if defined(DEBUG_MATMATMULT) 4637c2e2f26SHong Zhang if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultSymbolic_MPIAIJ_MPIAIJ_32()...\n",rank); 4647c2e2f26SHong Zhang #endif 465d0f46423SBarry Smith if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend){ 466e32f2f54SBarry Smith SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap->rstart,A->cmap->rend,B->rmap->rstart,B->rmap->rend); 4672499ec78SHong Zhang } 468598bc09dSHong Zhang 4692499ec78SHong Zhang ierr = PetscNew(Mat_MatMatMultMPI,&mult);CHKERRQ(ierr); 4702499ec78SHong Zhang 471d5821860SHong Zhang /* get isrowb: nonzero col of A */ 472d5821860SHong Zhang start = A->cmap->rstart; 473d5821860SHong Zhang cmap = a->garray; 474d5821860SHong Zhang nzA = a->A->cmap->n; 475d5821860SHong Zhang nzB = a->B->cmap->n; 476d5821860SHong Zhang ierr = PetscMalloc((nzA+nzB)*sizeof(PetscInt), &idx);CHKERRQ(ierr); 477d5821860SHong Zhang ncols = 0; 478d5821860SHong Zhang for (i=0; i<nzB; i++) { /* row < local row index */ 479d5821860SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 480d5821860SHong Zhang else break; 481d5821860SHong Zhang } 482d5821860SHong Zhang imark = i; 483d5821860SHong Zhang for (i=0; i<nzA; i++) idx[ncols++] = start + i; /* local rows */ 484d5821860SHong Zhang for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 485d5821860SHong Zhang ierr = ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,PETSC_OWN_POINTER,&mult->isrowb);CHKERRQ(ierr); 486d5821860SHong Zhang ierr = ISCreateStride(PETSC_COMM_SELF,B->cmap->N,0,1,&mult->iscolb);CHKERRQ(ierr); 487d5821860SHong Zhang 488d5821860SHong Zhang /* get isrowa: all local rows of A */ 489d5821860SHong Zhang ierr = ISCreateStride(PETSC_COMM_SELF,A->rmap->n,A->rmap->rstart,1,&mult->isrowa);CHKERRQ(ierr); 490d5821860SHong Zhang 491d5821860SHong Zhang /* Below should go to MatMatMultNumeric_MPIAIJ_MPIAIJ() - How to generate C there? */ 4922499ec78SHong Zhang /* create a seq matrix B_seq = submatrix of B by taking rows of B that equal to nonzero col of A */ 493d5821860SHong Zhang ierr = MatGetSubMatrices(B,1,&mult->isrowb,&mult->iscolb,MAT_INITIAL_MATRIX,&seq);CHKERRQ(ierr); 494d5821860SHong Zhang mult->B_seq = *seq; 495d5821860SHong Zhang ierr = PetscFree(seq);CHKERRQ(ierr); 4962499ec78SHong Zhang 4972499ec78SHong Zhang /* create a seq matrix A_seq = submatrix of A by taking all local rows of A */ 498d5821860SHong Zhang ierr = MatGetSubMatrices(A,1,&mult->isrowa,&mult->isrowb,MAT_INITIAL_MATRIX,&seq);CHKERRQ(ierr); 499d5821860SHong Zhang mult->A_loc = *seq; 500d5821860SHong Zhang ierr = PetscFree(seq);CHKERRQ(ierr); 5012499ec78SHong Zhang 5022499ec78SHong Zhang /* compute C_seq = A_seq * B_seq */ 503*9b8102ccSHong Zhang ierr = MatMatMultSymbolic_SeqAIJ_SeqAIJ(mult->A_loc,mult->B_seq,fill,&mult->C_seq);CHKERRQ(ierr); 504*9b8102ccSHong Zhang ierr = MatMatMultNumeric_SeqAIJ_SeqAIJ(mult->A_loc,mult->B_seq,mult->C_seq);CHKERRQ(ierr); 5052499ec78SHong Zhang 5062499ec78SHong Zhang /* create mpi matrix C by concatinating C_seq */ 5072499ec78SHong Zhang ierr = PetscObjectReference((PetscObject)mult->C_seq);CHKERRQ(ierr); /* prevent C_seq being destroyed by MatMerge() */ 508*9b8102ccSHong Zhang ierr = MatMergeSymbolic(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,&AB);CHKERRQ(ierr); 509*9b8102ccSHong Zhang ierr = MatMergeNumeric(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,AB);CHKERRQ(ierr); 5102499ec78SHong Zhang 5112499ec78SHong Zhang /* attach the supporting struct to C for reuse of symbolic C */ 512776b82aeSLisandro Dalcin ierr = PetscContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr); 513776b82aeSLisandro Dalcin ierr = PetscContainerSetPointer(container,mult);CHKERRQ(ierr); 514776b82aeSLisandro Dalcin ierr = PetscContainerSetUserDestroy(container,PetscContainerDestroy_Mat_MatMatMultMPI);CHKERRQ(ierr); 515d5821860SHong Zhang ierr = PetscObjectCompose((PetscObject)AB,"Mat_MatMatMultMPI",(PetscObject)container);CHKERRQ(ierr); 516b160f555SLisandro Dalcin ierr = PetscContainerDestroy(&container);CHKERRQ(ierr); 517d5821860SHong Zhang mult->destroy = AB->ops->destroy; 518d5821860SHong Zhang mult->duplicate = AB->ops->duplicate; 519a1a4e84aSHong Zhang AB->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_32; 520a1a4e84aSHong Zhang AB->ops->destroy = MatDestroy_MPIAIJ_MatMatMult_32; 521a1a4e84aSHong Zhang AB->ops->duplicate = MatDuplicate_MPIAIJ_MatMatMult_32; 5228cdbd757SHong Zhang AB->ops->matmult = MatMatMult_MPIAIJ_MPIAIJ; 523d5821860SHong Zhang *C = AB; 5242499ec78SHong Zhang PetscFunctionReturn(0); 5252499ec78SHong Zhang } 5262499ec78SHong Zhang 5279123193aSHong Zhang #undef __FUNCT__ 5289123193aSHong Zhang #define __FUNCT__ "MatMatMult_MPIAIJ_MPIDense" 5299123193aSHong Zhang PetscErrorCode MatMatMult_MPIAIJ_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 5309123193aSHong Zhang { 5319123193aSHong Zhang PetscErrorCode ierr; 5329123193aSHong Zhang 5339123193aSHong Zhang PetscFunctionBegin; 5349123193aSHong Zhang if (scall == MAT_INITIAL_MATRIX){ 5359123193aSHong Zhang ierr = MatMatMultSymbolic_MPIAIJ_MPIDense(A,B,fill,C);CHKERRQ(ierr); 5369123193aSHong Zhang } 5379123193aSHong Zhang ierr = MatMatMultNumeric_MPIAIJ_MPIDense(A,B,*C);CHKERRQ(ierr); 5389123193aSHong Zhang PetscFunctionReturn(0); 5399123193aSHong Zhang } 5409123193aSHong Zhang 5414324174eSBarry Smith typedef struct { 5424324174eSBarry Smith Mat workB; 5434324174eSBarry Smith PetscScalar *rvalues,*svalues; 5444324174eSBarry Smith MPI_Request *rwaits,*swaits; 5454324174eSBarry Smith } MPIAIJ_MPIDense; 5464324174eSBarry Smith 5477af9e4fdSHong Zhang #undef __FUNCT__ 5487af9e4fdSHong Zhang #define __FUNCT__ "MPIAIJ_MPIDenseDestroy" 5494324174eSBarry Smith PetscErrorCode MPIAIJ_MPIDenseDestroy(void *ctx) 5504324174eSBarry Smith { 5514324174eSBarry Smith MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense*) ctx; 5524324174eSBarry Smith PetscErrorCode ierr; 5534324174eSBarry Smith 5544324174eSBarry Smith PetscFunctionBegin; 5556bf464f9SBarry Smith ierr = MatDestroy(&contents->workB);CHKERRQ(ierr); 5564324174eSBarry Smith ierr = PetscFree4(contents->rvalues,contents->svalues,contents->rwaits,contents->swaits);CHKERRQ(ierr); 5574324174eSBarry Smith ierr = PetscFree(contents);CHKERRQ(ierr); 5584324174eSBarry Smith PetscFunctionReturn(0); 5594324174eSBarry Smith } 5604324174eSBarry Smith 5619123193aSHong Zhang #undef __FUNCT__ 5629123193aSHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIDense" 5639123193aSHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 5649123193aSHong Zhang { 5659123193aSHong Zhang PetscErrorCode ierr; 566f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ*) A->data; 567d0f46423SBarry Smith PetscInt nz = aij->B->cmap->n; 568bf0cc555SLisandro Dalcin PetscContainer container; 5694324174eSBarry Smith MPIAIJ_MPIDense *contents; 5704324174eSBarry Smith VecScatter ctx = aij->Mvctx; 5714324174eSBarry Smith VecScatter_MPI_General *from = (VecScatter_MPI_General*) ctx->fromdata; 5724324174eSBarry Smith VecScatter_MPI_General *to = ( VecScatter_MPI_General*) ctx->todata; 573d0f46423SBarry Smith PetscInt m=A->rmap->n,n=B->cmap->n; 5749123193aSHong Zhang 5759123193aSHong Zhang PetscFunctionBegin; 576cb2480eaSBarry Smith ierr = MatCreate(((PetscObject)B)->comm,C);CHKERRQ(ierr); 577d0f46423SBarry Smith ierr = MatSetSizes(*C,m,n,A->rmap->N,B->cmap->N);CHKERRQ(ierr); 578cb2480eaSBarry Smith ierr = MatSetType(*C,MATMPIDENSE);CHKERRQ(ierr); 579cb2480eaSBarry Smith ierr = MatAssemblyBegin(*C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 580cb2480eaSBarry Smith ierr = MatAssemblyEnd(*C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 5818cdbd757SHong Zhang (*C)->ops->matmult = MatMatMult_MPIAIJ_MPIDense; 582f32d5d43SBarry Smith 5834324174eSBarry Smith ierr = PetscNew(MPIAIJ_MPIDense,&contents);CHKERRQ(ierr); 584f32d5d43SBarry Smith /* Create work matrix used to store off processor rows of B needed for local product */ 585d0f46423SBarry Smith ierr = MatCreateSeqDense(PETSC_COMM_SELF,nz,B->cmap->N,PETSC_NULL,&contents->workB);CHKERRQ(ierr); 5864324174eSBarry Smith /* Create work arrays needed */ 587d0f46423SBarry Smith ierr = PetscMalloc4(B->cmap->N*from->starts[from->n],PetscScalar,&contents->rvalues, 588d0f46423SBarry Smith B->cmap->N*to->starts[to->n],PetscScalar,&contents->svalues, 5894324174eSBarry Smith from->n,MPI_Request,&contents->rwaits, 5904324174eSBarry Smith to->n,MPI_Request,&contents->swaits);CHKERRQ(ierr); 5914324174eSBarry Smith 592bf0cc555SLisandro Dalcin ierr = PetscContainerCreate(((PetscObject)A)->comm,&container);CHKERRQ(ierr); 593bf0cc555SLisandro Dalcin ierr = PetscContainerSetPointer(container,contents);CHKERRQ(ierr); 594bf0cc555SLisandro Dalcin ierr = PetscContainerSetUserDestroy(container,MPIAIJ_MPIDenseDestroy);CHKERRQ(ierr); 595bf0cc555SLisandro Dalcin ierr = PetscObjectCompose((PetscObject)(*C),"workB",(PetscObject)container);CHKERRQ(ierr); 596bf0cc555SLisandro Dalcin ierr = PetscContainerDestroy(&container);CHKERRQ(ierr); 5979123193aSHong Zhang PetscFunctionReturn(0); 5989123193aSHong Zhang } 5999123193aSHong Zhang 6007af9e4fdSHong Zhang #undef __FUNCT__ 6017af9e4fdSHong Zhang #define __FUNCT__ "MatMPIDenseScatter" 602f32d5d43SBarry Smith /* 6032636ff26SBarry Smith Performs an efficient scatter on the rows of B needed by this process; this is 6042636ff26SBarry Smith a modification of the VecScatterBegin_() routines. 605f32d5d43SBarry Smith */ 6064324174eSBarry Smith PetscErrorCode MatMPIDenseScatter(Mat A,Mat B,Mat C,Mat *outworkB) 607f32d5d43SBarry Smith { 608f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 609f32d5d43SBarry Smith PetscErrorCode ierr; 610f32d5d43SBarry Smith PetscScalar *b,*w,*svalues,*rvalues; 611f32d5d43SBarry Smith VecScatter ctx = aij->Mvctx; 612f32d5d43SBarry Smith VecScatter_MPI_General *from = (VecScatter_MPI_General*) ctx->fromdata; 613f32d5d43SBarry Smith VecScatter_MPI_General *to = ( VecScatter_MPI_General*) ctx->todata; 614f32d5d43SBarry Smith PetscInt i,j,k; 615aa5bb8c0SSatish Balay PetscInt *sindices,*sstarts,*rindices,*rstarts; 616aa5bb8c0SSatish Balay PetscMPIInt *sprocs,*rprocs,nrecvs; 617f32d5d43SBarry Smith MPI_Request *swaits,*rwaits; 6187adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 619d0f46423SBarry Smith PetscMPIInt tag = ((PetscObject)ctx)->tag,ncols = B->cmap->N, nrows = aij->B->cmap->n,imdex,nrowsB = B->rmap->n; 620f32d5d43SBarry Smith MPI_Status status; 6214324174eSBarry Smith MPIAIJ_MPIDense *contents; 622bf0cc555SLisandro Dalcin PetscContainer container; 6234324174eSBarry Smith Mat workB; 624f32d5d43SBarry Smith 625f32d5d43SBarry Smith PetscFunctionBegin; 626bf0cc555SLisandro Dalcin ierr = PetscObjectQuery((PetscObject)C,"workB",(PetscObject*)&container);CHKERRQ(ierr); 627bf0cc555SLisandro Dalcin if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit"); 628bf0cc555SLisandro Dalcin ierr = PetscContainerGetPointer(container,(void**)&contents);CHKERRQ(ierr); 6294324174eSBarry Smith 6304324174eSBarry Smith workB = *outworkB = contents->workB; 631e32f2f54SBarry Smith if (nrows != workB->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Number of rows of workB %D not equal to columns of aij->B %D",nrows,workB->cmap->n); 632f32d5d43SBarry Smith sindices = to->indices; 633f32d5d43SBarry Smith sstarts = to->starts; 634f32d5d43SBarry Smith sprocs = to->procs; 6354324174eSBarry Smith swaits = contents->swaits; 6364324174eSBarry Smith svalues = contents->svalues; 637f32d5d43SBarry Smith 638f32d5d43SBarry Smith rindices = from->indices; 639f32d5d43SBarry Smith rstarts = from->starts; 640f32d5d43SBarry Smith rprocs = from->procs; 6414324174eSBarry Smith rwaits = contents->rwaits; 6424324174eSBarry Smith rvalues = contents->rvalues; 643f32d5d43SBarry Smith 644f32d5d43SBarry Smith ierr = MatGetArray(B,&b);CHKERRQ(ierr); 645f32d5d43SBarry Smith ierr = MatGetArray(workB,&w);CHKERRQ(ierr); 646f32d5d43SBarry Smith 647f32d5d43SBarry Smith for (i=0; i<from->n; i++) { 648f32d5d43SBarry Smith ierr = MPI_Irecv(rvalues+ncols*rstarts[i],ncols*(rstarts[i+1]-rstarts[i]),MPIU_SCALAR,rprocs[i],tag,comm,rwaits+i);CHKERRQ(ierr); 649f32d5d43SBarry Smith } 650f32d5d43SBarry Smith 651f32d5d43SBarry Smith for (i=0; i<to->n; i++) { 652f32d5d43SBarry Smith /* pack a message at a time */ 653f32d5d43SBarry Smith CHKMEMQ; 654f32d5d43SBarry Smith for (j=0; j<sstarts[i+1]-sstarts[i]; j++){ 655f32d5d43SBarry Smith for (k=0; k<ncols; k++) { 656f32d5d43SBarry Smith svalues[ncols*(sstarts[i] + j) + k] = b[sindices[sstarts[i]+j] + nrowsB*k]; 6572636ff26SBarry Smith } 6582636ff26SBarry Smith } 659f32d5d43SBarry Smith CHKMEMQ; 660f32d5d43SBarry Smith ierr = MPI_Isend(svalues+ncols*sstarts[i],ncols*(sstarts[i+1]-sstarts[i]),MPIU_SCALAR,sprocs[i],tag,comm,swaits+i);CHKERRQ(ierr); 661f32d5d43SBarry Smith } 6622636ff26SBarry Smith 663f32d5d43SBarry Smith nrecvs = from->n; 664f32d5d43SBarry Smith while (nrecvs) { 665f32d5d43SBarry Smith ierr = MPI_Waitany(from->n,rwaits,&imdex,&status);CHKERRQ(ierr); 666f32d5d43SBarry Smith nrecvs--; 667f32d5d43SBarry Smith /* unpack a message at a time */ 668f32d5d43SBarry Smith CHKMEMQ; 669f32d5d43SBarry Smith for (j=0; j<rstarts[imdex+1]-rstarts[imdex]; j++){ 670f32d5d43SBarry Smith for (k=0; k<ncols; k++) { 671f32d5d43SBarry Smith w[rindices[rstarts[imdex]+j] + nrows*k] = rvalues[ncols*(rstarts[imdex] + j) + k]; 6722636ff26SBarry Smith } 6732636ff26SBarry Smith } 674f32d5d43SBarry Smith CHKMEMQ; 675f32d5d43SBarry Smith } 676cb9801acSJed Brown if (to->n) {ierr = MPI_Waitall(to->n,swaits,to->sstatus);CHKERRQ(ierr);} 677f32d5d43SBarry Smith 678f32d5d43SBarry Smith ierr = MatRestoreArray(B,&b);CHKERRQ(ierr); 679f32d5d43SBarry Smith ierr = MatRestoreArray(workB,&w);CHKERRQ(ierr); 680f32d5d43SBarry Smith ierr = MatAssemblyBegin(workB,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 681f32d5d43SBarry Smith ierr = MatAssemblyEnd(workB,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 682f32d5d43SBarry Smith PetscFunctionReturn(0); 683f32d5d43SBarry Smith } 684f32d5d43SBarry Smith extern PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat,Mat,Mat); 685f32d5d43SBarry Smith 6869123193aSHong Zhang #undef __FUNCT__ 6879123193aSHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIDense" 6889123193aSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A,Mat B,Mat C) 6899123193aSHong Zhang { 6909123193aSHong Zhang PetscErrorCode ierr; 691f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 692f32d5d43SBarry Smith Mat_MPIDense *bdense = (Mat_MPIDense*)B->data; 693f32d5d43SBarry Smith Mat_MPIDense *cdense = (Mat_MPIDense*)C->data; 694f32d5d43SBarry Smith Mat workB; 6959123193aSHong Zhang 6969123193aSHong Zhang PetscFunctionBegin; 6979123193aSHong Zhang 698f32d5d43SBarry Smith /* diagonal block of A times all local rows of B*/ 699f32d5d43SBarry Smith ierr = MatMatMultNumeric_SeqAIJ_SeqDense(aij->A,bdense->A,cdense->A);CHKERRQ(ierr); 700f32d5d43SBarry Smith 701f32d5d43SBarry Smith /* get off processor parts of B needed to complete the product */ 7024324174eSBarry Smith ierr = MatMPIDenseScatter(A,B,C,&workB);CHKERRQ(ierr); 703f32d5d43SBarry Smith 704f32d5d43SBarry Smith /* off-diagonal block of A times nonlocal rows of B */ 705f32d5d43SBarry Smith ierr = MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A);CHKERRQ(ierr); 7069123193aSHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7079123193aSHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7089123193aSHong Zhang PetscFunctionReturn(0); 7099123193aSHong Zhang } 7109123193aSHong Zhang 711