xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision 8a9c020ef9386a9599af7d232cee023eb5ec42c5)
1be1d678aSKris Buschelman 
22499ec78SHong Zhang /*
32499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
42499ec78SHong Zhang           C = A * B
52499ec78SHong Zhang */
6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
8c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
9c6db04a5SJed Brown #include <petscbt.h>
10c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
11af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
1297929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
131634b032SHong Zhang 
145e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
154222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat,Mat,PetscReal,Mat);
165e5acdf2Sstefano_zampini #endif
175e5acdf2Sstefano_zampini 
18*8a9c020eSBarry Smith PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C)
19*8a9c020eSBarry Smith {
20*8a9c020eSBarry Smith   Mat_Product         *product = C->product;
21*8a9c020eSBarry Smith   Mat                 B=product->B;
22*8a9c020eSBarry Smith 
23*8a9c020eSBarry Smith   PetscFunctionBegin;
24*8a9c020eSBarry Smith   PetscCall(MatTranspose(B,MAT_INITIAL_MATRIX,&product->B));
25*8a9c020eSBarry Smith   PetscCall(MatDestroy(&B));
26*8a9c020eSBarry Smith   PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C));
27*8a9c020eSBarry Smith   PetscFunctionReturn(0);
28*8a9c020eSBarry Smith }
29*8a9c020eSBarry Smith 
304222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C)
312499ec78SHong Zhang {
324222ddf1SHong Zhang   Mat_Product         *product = C->product;
334222ddf1SHong Zhang   Mat                 A=product->A,B=product->B;
344222ddf1SHong Zhang   MatProductAlgorithm alg=product->alg;
354222ddf1SHong Zhang   PetscReal           fill=product->fill;
365e68f438SHong Zhang   PetscBool           flg;
372499ec78SHong Zhang 
382499ec78SHong Zhang   PetscFunctionBegin;
394222ddf1SHong Zhang   /* scalable */
409566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"scalable",&flg));
414222ddf1SHong Zhang   if (flg) {
429566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C));
436718818eSStefano Zampini     PetscFunctionReturn(0);
440fc8cf34SHong Zhang   }
457d0a89b7SHong Zhang 
464222ddf1SHong Zhang   /* nonscalable */
479566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"nonscalable",&flg));
484222ddf1SHong Zhang   if (flg) {
499566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A,B,fill,C));
506718818eSStefano Zampini     PetscFunctionReturn(0);
514222ddf1SHong Zhang   }
524222ddf1SHong Zhang 
534222ddf1SHong Zhang   /* seqmpi */
549566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"seqmpi",&flg));
554222ddf1SHong Zhang   if (flg) {
569566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A,B,fill,C));
576718818eSStefano Zampini     PetscFunctionReturn(0);
584222ddf1SHong Zhang   }
594222ddf1SHong Zhang 
604e84afc0SStefano Zampini   /* backend general code */
619566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"backend",&flg));
624e84afc0SStefano Zampini   if (flg) {
639566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
644e84afc0SStefano Zampini     PetscFunctionReturn(0);
654e84afc0SStefano Zampini   }
664e84afc0SStefano Zampini 
674222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
689566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"hypre",&flg));
694222ddf1SHong Zhang   if (flg) {
709566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A,B,fill,C));
714222ddf1SHong Zhang     PetscFunctionReturn(0);
724222ddf1SHong Zhang   }
734222ddf1SHong Zhang #endif
744222ddf1SHong Zhang   SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"Mat Product Algorithm is not supported");
752499ec78SHong Zhang }
762499ec78SHong Zhang 
776718818eSStefano Zampini PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(void *data)
78598bc09dSHong Zhang {
796718818eSStefano Zampini   Mat_APMPI      *ptap = (Mat_APMPI*)data;
80598bc09dSHong Zhang 
81598bc09dSHong Zhang   PetscFunctionBegin;
829566063dSJacob Faibussowitsch   PetscCall(PetscFree2(ptap->startsj_s,ptap->startsj_r));
839566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->bufa));
849566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_loc));
859566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_oth));
869566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->Pt));
879566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->api));
889566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apj));
899566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apa));
909566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap));
91598bc09dSHong Zhang   PetscFunctionReturn(0);
92598bc09dSHong Zhang }
93598bc09dSHong Zhang 
94f8efd71cSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A,Mat P,Mat C)
95598bc09dSHong Zhang {
964ae0847bSHong Zhang   Mat_MPIAIJ        *a  =(Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data;
97598bc09dSHong Zhang   Mat_SeqAIJ        *ad =(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
98598bc09dSHong Zhang   Mat_SeqAIJ        *cd =(Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data;
99c12557a1SHong Zhang   PetscScalar       *cda=cd->a,*coa=co->a;
100598bc09dSHong Zhang   Mat_SeqAIJ        *p_loc,*p_oth;
1019ce11a7cSHong Zhang   PetscScalar       *apa,*ca;
102c12557a1SHong Zhang   PetscInt          cm =C->rmap->n;
1036718818eSStefano Zampini   Mat_APMPI         *ptap;
104c12557a1SHong Zhang   PetscInt          *api,*apj,*apJ,i,k;
10529825010SHong Zhang   PetscInt          cstart=C->cmap->rstart;
106598bc09dSHong Zhang   PetscInt          cdnz,conz,k0,k1;
107ce496241SStefano Zampini   const PetscScalar *dummy;
1089467f45fSHong Zhang   MPI_Comm          comm;
1099467f45fSHong Zhang   PetscMPIInt       size;
110598bc09dSHong Zhang 
111598bc09dSHong Zhang   PetscFunctionBegin;
1126718818eSStefano Zampini   MatCheckProduct(C,3);
1136718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
11428b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
1159566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
1169566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
1179467f45fSHong Zhang 
1182c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!ptap->P_oth && size>1,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"AP cannot be reused. Do not call MatProductClear()");
11980da8df7SHong Zhang 
12065e4b4d4SStefano Zampini   /* flag CPU mask for C */
12165e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
12265e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
12365e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
12465e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
12565e4b4d4SStefano Zampini #endif
12665e4b4d4SStefano Zampini 
127a1a4e84aSHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
128598bc09dSHong Zhang   /*-----------------------------------------------------*/
129a1a4e84aSHong Zhang   /* update numerical values of P_oth and P_loc */
1309566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
1319566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc));
132598bc09dSHong Zhang 
133598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
134598bc09dSHong Zhang   /*----------------------------------------------------------*/
135598bc09dSHong Zhang   /* get data from symbolic products */
136a1a4e84aSHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
137c12557a1SHong Zhang   p_oth = NULL;
1389467f45fSHong Zhang   if (size >1) {
1399467f45fSHong Zhang     p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
1409467f45fSHong Zhang   }
141598bc09dSHong Zhang 
142598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
143598bc09dSHong Zhang   apa = ptap->apa;
144598bc09dSHong Zhang 
14529825010SHong Zhang   api = ptap->api;
14629825010SHong Zhang   apj = ptap->apj;
147ce496241SStefano Zampini   /* trigger copy to CPU */
1489566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A,&dummy));
1499566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A,&dummy));
1509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B,&dummy));
1519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B,&dummy));
152598bc09dSHong Zhang   for (i=0; i<cm; i++) {
153c12557a1SHong Zhang     /* compute apa = A[i,:]*P */
154e497d3c8SHong Zhang     AProw_nonscalable(i,ad,ao,p_loc,p_oth,apa);
155598bc09dSHong Zhang 
156598bc09dSHong Zhang     /* set values in C */
157598bc09dSHong Zhang     apJ  = apj + api[i];
158598bc09dSHong Zhang     cdnz = cd->i[i+1] - cd->i[i];
159598bc09dSHong Zhang     conz = co->i[i+1] - co->i[i];
160598bc09dSHong Zhang 
161910cf402Sprj-     /* 1st off-diagonal part of C */
162598bc09dSHong Zhang     ca = coa + co->i[i];
163598bc09dSHong Zhang     k  = 0;
164598bc09dSHong Zhang     for (k0=0; k0<conz; k0++) {
165598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
166598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
1675cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
168598bc09dSHong Zhang     }
169598bc09dSHong Zhang 
170598bc09dSHong Zhang     /* diagonal part of C */
171598bc09dSHong Zhang     ca = cda + cd->i[i];
172598bc09dSHong Zhang     for (k1=0; k1<cdnz; k1++) {
173598bc09dSHong Zhang       ca[k1]      = apa[apJ[k]];
1745cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
175598bc09dSHong Zhang     }
176598bc09dSHong Zhang 
177910cf402Sprj-     /* 2nd off-diagonal part of C */
178598bc09dSHong Zhang     ca = coa + co->i[i];
179598bc09dSHong Zhang     for (; k0<conz; k0++) {
180598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
1815cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
182598bc09dSHong Zhang     }
183598bc09dSHong Zhang   }
1849566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
1859566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
186598bc09dSHong Zhang   PetscFunctionReturn(0);
187598bc09dSHong Zhang }
188598bc09dSHong Zhang 
1894222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A,Mat P,PetscReal fill,Mat C)
190598bc09dSHong Zhang {
191ce94432eSBarry Smith   MPI_Comm           comm;
1929467f45fSHong Zhang   PetscMPIInt        size;
1933cdca5ebSHong Zhang   Mat_APMPI          *ptap;
1940298fd71SBarry Smith   PetscFreeSpaceList free_space=NULL,current_space=NULL;
1956718818eSStefano Zampini   Mat_MPIAIJ         *a=(Mat_MPIAIJ*)A->data;
196bfcd1a73SHong Zhang   Mat_SeqAIJ         *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth;
1977dbaa2c6Sandi selinger   PetscInt           *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz;
1984ae0847bSHong Zhang   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart;
199d14fa243SHong Zhang   PetscInt           *lnk,i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi;
2005cab4f04SHong Zhang   PetscInt           am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n;
201598bc09dSHong Zhang   PetscBT            lnkbt;
202bfcd1a73SHong Zhang   PetscReal          afill;
203b92f168fSBarry Smith   MatType            mtype;
204598bc09dSHong Zhang 
205598bc09dSHong Zhang   PetscFunctionBegin;
2066718818eSStefano Zampini   MatCheckProduct(C,4);
20728b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
2089566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
2099566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
2109467f45fSHong Zhang 
2113cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
2129566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
213598bc09dSHong Zhang 
214598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
2159566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
21619f0e57aSHong Zhang 
217598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
2189566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc));
219598bc09dSHong Zhang 
220a1a4e84aSHong Zhang   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
221598bc09dSHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j;
2229467f45fSHong Zhang   if (size > 1) {
2239467f45fSHong Zhang     p_oth  = (Mat_SeqAIJ*)(ptap->P_oth)->data;
224598bc09dSHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j;
22520e3dc75SHong Zhang   } else {
22620e3dc75SHong Zhang     p_oth = NULL;
22720e3dc75SHong Zhang     pi_oth = NULL; pj_oth = NULL;
2289467f45fSHong Zhang   }
229598bc09dSHong Zhang 
230598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
231598bc09dSHong Zhang   /*-------------------------------------------------------------------*/
2329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&api));
233a1a4e84aSHong Zhang   ptap->api = api;
234598bc09dSHong Zhang   api[0]    = 0;
235598bc09dSHong Zhang 
2365cab4f04SHong Zhang   /* create and initialize a linked list */
2379566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN,pN,&lnk,&lnkbt));
238598bc09dSHong Zhang 
239bfcd1a73SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
2409566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space));
241598bc09dSHong Zhang   current_space = free_space;
242598bc09dSHong Zhang 
243d0609cedSBarry Smith   MatPreallocateBegin(comm,am,pn,dnz,onz);
244598bc09dSHong Zhang   for (i=0; i<am; i++) {
245598bc09dSHong Zhang     /* diagonal portion of A */
246598bc09dSHong Zhang     nzi = adi[i+1] - adi[i];
247598bc09dSHong Zhang     for (j=0; j<nzi; j++) {
248598bc09dSHong Zhang       row  = *adj++;
249598bc09dSHong Zhang       pnz  = pi_loc[row+1] - pi_loc[row];
250598bc09dSHong Zhang       Jptr = pj_loc + pi_loc[row];
251598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
2529566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz,Jptr,lnk,lnkbt));
253598bc09dSHong Zhang     }
254598bc09dSHong Zhang     /* off-diagonal portion of A */
255598bc09dSHong Zhang     nzi = aoi[i+1] - aoi[i];
256598bc09dSHong Zhang     for (j=0; j<nzi; j++) {
257598bc09dSHong Zhang       row  = *aoj++;
258598bc09dSHong Zhang       pnz  = pi_oth[row+1] - pi_oth[row];
259598bc09dSHong Zhang       Jptr = pj_oth + pi_oth[row];
2609566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz,Jptr,lnk,lnkbt));
261598bc09dSHong Zhang     }
2628c78258cSHong Zhang     /* add possible missing diagonal entry */
2638c78258cSHong Zhang     if (C->force_diagonals) {
2648c78258cSHong Zhang       j = i + rstart; /* column index */
2659566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1,&j,lnk,lnkbt));
2668c78258cSHong Zhang     }
267598bc09dSHong Zhang 
268d14fa243SHong Zhang     apnz     = lnk[0];
269598bc09dSHong Zhang     api[i+1] = api[i] + apnz;
270598bc09dSHong Zhang 
271598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
272598bc09dSHong Zhang     if (current_space->local_remaining<apnz) {
2739566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz,current_space->total_array_size),&current_space));
274598bc09dSHong Zhang       nspacedouble++;
275598bc09dSHong Zhang     }
276598bc09dSHong Zhang 
277598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
2789566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN,apnz,current_space->array,lnk,lnkbt));
2799566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz));
2802205254eSKarl Rupp 
281598bc09dSHong Zhang     current_space->array           += apnz;
282598bc09dSHong Zhang     current_space->local_used      += apnz;
283598bc09dSHong Zhang     current_space->local_remaining -= apnz;
284598bc09dSHong Zhang   }
285598bc09dSHong Zhang 
286598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
287598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
2889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(api[am]+1,&ptap->apj));
289a1a4e84aSHong Zhang   apj  = ptap->apj;
2909566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,ptap->apj));
2919566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk,lnkbt));
292598bc09dSHong Zhang 
293f84c536bSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
2949566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN,&ptap->apa));
295f84c536bSHong Zhang 
2964222ddf1SHong Zhang   /* set and assemble symbolic parallel matrix C */
2974222ddf1SHong Zhang   /*---------------------------------------------*/
2989566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE));
2999566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,P));
300a2f3521dSMark F. Adams 
3019566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
3029566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
3039566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
304d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
30517f75172Sandi selinger 
3069566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
3079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
3089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
3099566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
310598bc09dSHong Zhang 
3114222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
3124222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
313598bc09dSHong Zhang 
3144222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
3156718818eSStefano Zampini   C->product->data    = ptap;
3166718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
317598bc09dSHong Zhang 
318bfcd1a73SHong Zhang   /* set MatInfo */
319118727c9SMark F. Adams   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
320bfcd1a73SHong Zhang   if (afill < 1.0) afill = 1.0;
3214222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
3224222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
3234222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
324bfcd1a73SHong Zhang 
325bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
326bfcd1a73SHong Zhang   if (api[am]) {
3279566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill));
3289566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
329bfcd1a73SHong Zhang   } else {
3309566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
331bfcd1a73SHong Zhang   }
332bfcd1a73SHong Zhang #endif
333598bc09dSHong Zhang   PetscFunctionReturn(0);
334598bc09dSHong Zhang }
335598bc09dSHong Zhang 
3364222ddf1SHong Zhang /* ------------------------------------------------------- */
3376718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat,Mat,PetscReal,Mat);
3386718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat,Mat,Mat);
3396718818eSStefano Zampini 
3404222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C)
3419123193aSHong Zhang {
3424222ddf1SHong Zhang   Mat_Product *product = C->product;
3434222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
3449123193aSHong Zhang 
3459123193aSHong Zhang   PetscFunctionBegin;
3464222ddf1SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend)
34798921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->cmap->rstart,A->cmap->rend,B->rmap->rstart,B->rmap->rend);
3484222ddf1SHong Zhang 
3494222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense;
3504222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
3519123193aSHong Zhang   PetscFunctionReturn(0);
3529123193aSHong Zhang }
3534222ddf1SHong Zhang /* -------------------------------------------------------------------- */
3544222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C)
3554222ddf1SHong Zhang {
3564222ddf1SHong Zhang   Mat_Product *product = C->product;
3574222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
3584222ddf1SHong Zhang 
3594222ddf1SHong Zhang   PetscFunctionBegin;
3604222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
36198921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
3624222ddf1SHong Zhang 
3634222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense;
3644222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
3654222ddf1SHong Zhang   PetscFunctionReturn(0);
3664222ddf1SHong Zhang }
3674222ddf1SHong Zhang 
3684222ddf1SHong Zhang /* --------------------------------------------------------------------- */
3694222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C)
3704222ddf1SHong Zhang {
3714222ddf1SHong Zhang   Mat_Product    *product = C->product;
3724222ddf1SHong Zhang 
3734222ddf1SHong Zhang   PetscFunctionBegin;
3744222ddf1SHong Zhang   switch (product->type) {
3754222ddf1SHong Zhang   case MATPRODUCT_AB:
3769566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C));
3774222ddf1SHong Zhang     break;
3784222ddf1SHong Zhang   case MATPRODUCT_AtB:
3799566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C));
3804222ddf1SHong Zhang     break;
3814222ddf1SHong Zhang   default:
3826718818eSStefano Zampini     break;
3834222ddf1SHong Zhang   }
3844222ddf1SHong Zhang   PetscFunctionReturn(0);
3854222ddf1SHong Zhang }
3864222ddf1SHong Zhang /* ------------------------------------------------------- */
3879123193aSHong Zhang 
3884324174eSBarry Smith typedef struct {
3895ea7661aSPierre Jolivet   Mat          workB,workB1;
3904324174eSBarry Smith   MPI_Request  *rwaits,*swaits;
39187753ddeSHong Zhang   PetscInt     nsends,nrecvs;
39287753ddeSHong Zhang   MPI_Datatype *stype,*rtype;
3936718818eSStefano Zampini   PetscInt     blda;
3944324174eSBarry Smith } MPIAIJ_MPIDense;
3954324174eSBarry Smith 
39696b95a6bSBarry Smith PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void *ctx)
3974324174eSBarry Smith {
3984324174eSBarry Smith   MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense*)ctx;
39987753ddeSHong Zhang   PetscInt        i;
4004324174eSBarry Smith 
4014324174eSBarry Smith   PetscFunctionBegin;
4029566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB));
4039566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB1));
40487753ddeSHong Zhang   for (i=0; i<contents->nsends; i++) {
4059566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&contents->stype[i]));
40687753ddeSHong Zhang   }
40787753ddeSHong Zhang   for (i=0; i<contents->nrecvs; i++) {
4089566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&contents->rtype[i]));
40987753ddeSHong Zhang   }
4109566063dSJacob Faibussowitsch   PetscCall(PetscFree4(contents->stype,contents->rtype,contents->rwaits,contents->swaits));
4119566063dSJacob Faibussowitsch   PetscCall(PetscFree(contents));
4124324174eSBarry Smith   PetscFunctionReturn(0);
4134324174eSBarry Smith }
4144324174eSBarry Smith 
4156718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
4169123193aSHong Zhang {
417f32d5d43SBarry Smith   Mat_MPIAIJ      *aij=(Mat_MPIAIJ*)A->data;
418b45e3bf4SStefano Zampini   PetscInt        nz=aij->B->cmap->n,nsends,nrecvs,i,nrows_to,j,blda,m,M,n,N;
4194324174eSBarry Smith   MPIAIJ_MPIDense *contents;
4204324174eSBarry Smith   VecScatter      ctx=aij->Mvctx;
4215ea7661aSPierre Jolivet   PetscInt        Am=A->rmap->n,Bm=B->rmap->n,BN=B->cmap->N,Bbn,Bbn1,bs,nrows_from,numBb;
42287753ddeSHong Zhang   MPI_Comm        comm;
42387753ddeSHong Zhang   MPI_Datatype    type1,*stype,*rtype;
42487753ddeSHong Zhang   const PetscInt  *sindices,*sstarts,*rstarts;
42587753ddeSHong Zhang   PetscMPIInt     *disp;
4266718818eSStefano Zampini   PetscBool       cisdense;
4279123193aSHong Zhang 
4289123193aSHong Zhang   PetscFunctionBegin;
4296718818eSStefano Zampini   MatCheckProduct(C,4);
43028b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty");
4319566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
4329566063dSJacob Faibussowitsch   PetscCall(PetscObjectBaseTypeCompare((PetscObject)C,MATMPIDENSE,&cisdense));
4336718818eSStefano Zampini   if (!cisdense) {
4349566063dSJacob Faibussowitsch     PetscCall(MatSetType(C,((PetscObject)B)->type_name));
4356718818eSStefano Zampini   }
4369566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(C,&m,&n));
4379566063dSJacob Faibussowitsch   PetscCall(MatGetSize(C,&M,&N));
438825bfe5fSPierre Jolivet   if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) {
4399566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(C,Am,B->cmap->n,A->rmap->N,BN));
440825bfe5fSPierre Jolivet   }
4419566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,B));
4429566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
4439566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B,&blda));
4449566063dSJacob Faibussowitsch   PetscCall(PetscNew(&contents));
4454324174eSBarry Smith 
4469566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,NULL,NULL));
4479566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,NULL,NULL));
44887753ddeSHong Zhang 
44987753ddeSHong Zhang   /* Create column block of B and C for memory scalability when BN is too large */
45087753ddeSHong Zhang   /* Estimate Bbn, column size of Bb */
45187753ddeSHong Zhang   if (nz) {
45287753ddeSHong Zhang     Bbn1 = 2*Am*BN/nz;
453da7cbbe7SHong Zhang     if (!Bbn1) Bbn1 = 1;
45487753ddeSHong Zhang   } else Bbn1 = BN;
45587753ddeSHong Zhang 
45687753ddeSHong Zhang   bs = PetscAbs(B->cmap->bs);
45787753ddeSHong Zhang   Bbn1 = Bbn1/bs *bs; /* Bbn1 is a multiple of bs */
45887753ddeSHong Zhang   if (Bbn1 > BN) Bbn1 = BN;
4599566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(&Bbn1,&Bbn,1,MPIU_INT,MPI_MAX,comm));
46087753ddeSHong Zhang 
46187753ddeSHong Zhang   /* Enable runtime option for Bbn */
462d0609cedSBarry Smith   PetscOptionsBegin(comm,((PetscObject)C)->prefix,"MatMatMult","Mat");
4639566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-matmatmult_Bbn","Number of columns in Bb","MatMatMult",Bbn,&Bbn,NULL));
464d0609cedSBarry Smith   PetscOptionsEnd();
4656718818eSStefano Zampini   Bbn  = PetscMin(Bbn,BN);
46687753ddeSHong Zhang 
4676718818eSStefano Zampini   if (Bbn > 0 && Bbn < BN) {
4685ea7661aSPierre Jolivet     numBb = BN/Bbn;
4695ea7661aSPierre Jolivet     Bbn1 = BN - numBb*Bbn;
4705ea7661aSPierre Jolivet   } else numBb = 0;
47187753ddeSHong Zhang 
4725ea7661aSPierre Jolivet   if (numBb) {
4739566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n",BN,Bbn,numBb));
4745ea7661aSPierre Jolivet     if (Bbn1) { /* Create workB1 for the remaining columns */
4759566063dSJacob Faibussowitsch       PetscCall(PetscInfo(C,"use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n",BN,Bbn1));
47687753ddeSHong Zhang       /* Create work matrix used to store off processor rows of B needed for local product */
4779566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqDense(PETSC_COMM_SELF,nz,Bbn1,NULL,&contents->workB1));
4785ea7661aSPierre Jolivet     } else contents->workB1 = NULL;
47987753ddeSHong Zhang   }
48087753ddeSHong Zhang 
48187753ddeSHong Zhang   /* Create work matrix used to store off processor rows of B needed for local product */
4829566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqDense(PETSC_COMM_SELF,nz,Bbn,NULL,&contents->workB));
48387753ddeSHong Zhang 
48487753ddeSHong Zhang   /* Use MPI derived data type to reduce memory required by the send/recv buffers */
4859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(nsends,&stype,nrecvs,&rtype,nrecvs,&contents->rwaits,nsends,&contents->swaits));
48687753ddeSHong Zhang   contents->stype  = stype;
48787753ddeSHong Zhang   contents->nsends = nsends;
48887753ddeSHong Zhang 
48987753ddeSHong Zhang   contents->rtype  = rtype;
49087753ddeSHong Zhang   contents->nrecvs = nrecvs;
4916718818eSStefano Zampini   contents->blda   = blda;
49287753ddeSHong Zhang 
4939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bm+1,&disp));
49487753ddeSHong Zhang   for (i=0; i<nsends; i++) {
49587753ddeSHong Zhang     nrows_to = sstarts[i+1]-sstarts[i];
496b45e3bf4SStefano Zampini     for (j=0; j<nrows_to; j++) disp[j] = sindices[sstarts[i]+j]; /* rowB to be sent */
4979566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(nrows_to,1,disp,MPIU_SCALAR,&type1));
4989566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1,0,blda*sizeof(PetscScalar),&stype[i]));
4999566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&stype[i]));
5009566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
50187753ddeSHong Zhang   }
50287753ddeSHong Zhang 
50387753ddeSHong Zhang   for (i=0; i<nrecvs; i++) {
50487753ddeSHong Zhang     /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */
50587753ddeSHong Zhang     nrows_from = rstarts[i+1]-rstarts[i];
50687753ddeSHong Zhang     disp[0] = 0;
5079566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(1,nrows_from,disp,MPIU_SCALAR,&type1));
5089566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1,0,nz*sizeof(PetscScalar),&rtype[i]));
5099566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&rtype[i]));
5109566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
51187753ddeSHong Zhang   }
51287753ddeSHong Zhang 
5139566063dSJacob Faibussowitsch   PetscCall(PetscFree(disp));
5149566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,NULL,NULL));
5159566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,NULL,NULL));
5169566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE));
5179566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
5189566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
5199566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
5206718818eSStefano Zampini 
5216718818eSStefano Zampini   C->product->data = contents;
5226718818eSStefano Zampini   C->product->destroy = MatMPIAIJ_MPIDenseDestroy;
5234222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense;
5249123193aSHong Zhang   PetscFunctionReturn(0);
5259123193aSHong Zhang }
5269123193aSHong Zhang 
52793aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat,Mat,Mat,const PetscBool);
528f32d5d43SBarry Smith /*
5292636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
5302636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
53187753ddeSHong Zhang 
53287753ddeSHong Zhang     Input: Bbidx = 0: B = Bb
53387753ddeSHong Zhang                  = 1: B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense()
534f32d5d43SBarry Smith */
53587753ddeSHong Zhang PetscErrorCode MatMPIDenseScatter(Mat A,Mat B,PetscInt Bbidx,Mat C,Mat *outworkB)
536f32d5d43SBarry Smith {
537f32d5d43SBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ*)A->data;
5381683a169SBarry Smith   const PetscScalar *b;
53987753ddeSHong Zhang   PetscScalar       *rvalues;
540f32d5d43SBarry Smith   VecScatter        ctx = aij->Mvctx;
54187753ddeSHong Zhang   const PetscInt    *sindices,*sstarts,*rstarts;
5423515ee7fSJunchao Zhang   const PetscMPIInt *sprocs,*rprocs;
5436718818eSStefano Zampini   PetscInt          i,nsends,nrecvs;
544f32d5d43SBarry Smith   MPI_Request       *swaits,*rwaits;
545ce94432eSBarry Smith   MPI_Comm          comm;
5466718818eSStefano Zampini   PetscMPIInt       tag=((PetscObject)ctx)->tag,ncols=B->cmap->N,nrows=aij->B->cmap->n,nsends_mpi,nrecvs_mpi;
5474324174eSBarry Smith   MPIAIJ_MPIDense   *contents;
5484324174eSBarry Smith   Mat               workB;
54987753ddeSHong Zhang   MPI_Datatype      *stype,*rtype;
5506718818eSStefano Zampini   PetscInt          blda;
551f32d5d43SBarry Smith 
552f32d5d43SBarry Smith   PetscFunctionBegin;
5536718818eSStefano Zampini   MatCheckProduct(C,4);
55428b400f6SJacob Faibussowitsch   PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty");
5556718818eSStefano Zampini   contents = (MPIAIJ_MPIDense*)C->product->data;
5569566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,&sprocs,NULL/*bs*/));
5579566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,&rprocs,NULL/*bs*/));
5589566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends,&nsends_mpi));
5599566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nrecvs,&nrecvs_mpi));
560b45e3bf4SStefano Zampini   if (Bbidx == 0) workB = *outworkB = contents->workB;
561b45e3bf4SStefano Zampini   else workB = *outworkB = contents->workB1;
56208401ef6SPierre Jolivet   PetscCheck(nrows == workB->rmap->n,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d",workB->cmap->n,nrows);
5633515ee7fSJunchao Zhang   swaits = contents->swaits;
5643515ee7fSJunchao Zhang   rwaits = contents->rwaits;
565f32d5d43SBarry Smith 
5669566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B,&b));
5679566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B,&blda));
56808401ef6SPierre Jolivet   PetscCheck(blda == contents->blda,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT,blda,contents->blda);
5699566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(workB,&rvalues));
570f32d5d43SBarry Smith 
57187753ddeSHong Zhang   /* Post recv, use MPI derived data type to save memory */
5729566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
57387753ddeSHong Zhang   rtype = contents->rtype;
5743515ee7fSJunchao Zhang   for (i=0; i<nrecvs; i++) {
5759566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Irecv(rvalues+(rstarts[i]-rstarts[0]),ncols,rtype[i],rprocs[i],tag,comm,rwaits+i));
576f32d5d43SBarry Smith   }
577f32d5d43SBarry Smith 
57887753ddeSHong Zhang   stype = contents->stype;
5793515ee7fSJunchao Zhang   for (i=0; i<nsends; i++) {
5809566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(b,ncols,stype[i],sprocs[i],tag,comm,swaits+i));
581f32d5d43SBarry Smith   }
5822636ff26SBarry Smith 
5839566063dSJacob Faibussowitsch   if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi,rwaits,MPI_STATUSES_IGNORE));
5849566063dSJacob Faibussowitsch   if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi,swaits,MPI_STATUSES_IGNORE));
585f32d5d43SBarry Smith 
5869566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,&sprocs,NULL));
5879566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,&rprocs,NULL));
5889566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B,&b));
5899566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(workB,&rvalues));
59087753ddeSHong Zhang   PetscFunctionReturn(0);
59187753ddeSHong Zhang }
592f32d5d43SBarry Smith 
5936718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A,Mat B,Mat C)
5949123193aSHong Zhang {
595f32d5d43SBarry Smith   Mat_MPIAIJ      *aij    = (Mat_MPIAIJ*)A->data;
596f32d5d43SBarry Smith   Mat_MPIDense    *bdense = (Mat_MPIDense*)B->data;
597f32d5d43SBarry Smith   Mat_MPIDense    *cdense = (Mat_MPIDense*)C->data;
598f32d5d43SBarry Smith   Mat             workB;
59987753ddeSHong Zhang   MPIAIJ_MPIDense *contents;
6009123193aSHong Zhang 
6019123193aSHong Zhang   PetscFunctionBegin;
6026718818eSStefano Zampini   MatCheckProduct(C,3);
60328b400f6SJacob Faibussowitsch   PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty");
6046718818eSStefano Zampini   contents = (MPIAIJ_MPIDense*)C->product->data;
605f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B */
6065ea7661aSPierre Jolivet   /* TODO: this calls a symbolic multiplication every time, which could be avoided */
6079566063dSJacob Faibussowitsch   PetscCall(MatMatMult(aij->A,bdense->A,MAT_REUSE_MATRIX,PETSC_DEFAULT,&cdense->A));
6085ea7661aSPierre Jolivet   if (contents->workB->cmap->n == B->cmap->N) {
60987753ddeSHong Zhang     /* get off processor parts of B needed to complete C=A*B */
6109566063dSJacob Faibussowitsch     PetscCall(MatMPIDenseScatter(A,B,0,C,&workB));
611f32d5d43SBarry Smith 
612f32d5d43SBarry Smith     /* off-diagonal block of A times nonlocal rows of B */
6139566063dSJacob Faibussowitsch     PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A,PETSC_TRUE));
61487753ddeSHong Zhang   } else {
6155ea7661aSPierre Jolivet     Mat       Bb,Cb;
6165ea7661aSPierre Jolivet     PetscInt  BN=B->cmap->N,n=contents->workB->cmap->n,i;
617664c1e85SStefano Zampini     PetscBool ccpu;
61887753ddeSHong Zhang 
61908401ef6SPierre Jolivet     PetscCheck(n > 0,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Column block size %" PetscInt_FMT " must be positive",n);
620664c1e85SStefano Zampini     /* Prevent from unneeded copies back and forth from the GPU
621664c1e85SStefano Zampini        when getting and restoring the submatrix
622664c1e85SStefano Zampini        We need a proper GPU code for AIJ * dense in parallel */
6239566063dSJacob Faibussowitsch     PetscCall(MatBoundToCPU(C,&ccpu));
6249566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C,PETSC_TRUE));
6255ea7661aSPierre Jolivet     for (i=0; i<BN; i+=n) {
6269566063dSJacob Faibussowitsch       PetscCall(MatDenseGetSubMatrix(B,i,PetscMin(i+n,BN),&Bb));
6279566063dSJacob Faibussowitsch       PetscCall(MatDenseGetSubMatrix(C,i,PetscMin(i+n,BN),&Cb));
62887753ddeSHong Zhang 
6295ea7661aSPierre Jolivet       /* get off processor parts of B needed to complete C=A*B */
6309566063dSJacob Faibussowitsch       PetscCall(MatMPIDenseScatter(A,Bb,(i+n)>BN,C,&workB));
6315ea7661aSPierre Jolivet 
6325ea7661aSPierre Jolivet       /* off-diagonal block of A times nonlocal rows of B */
6335ea7661aSPierre Jolivet       cdense = (Mat_MPIDense*)Cb->data;
6349566063dSJacob Faibussowitsch       PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A,PETSC_TRUE));
6359566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(B,&Bb));
6369566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(C,&Cb));
63787753ddeSHong Zhang     }
6389566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C,ccpu));
63987753ddeSHong Zhang   }
6409123193aSHong Zhang   PetscFunctionReturn(0);
6419123193aSHong Zhang }
642cf1a0672SHong Zhang 
643f8efd71cSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A,Mat P,Mat C)
6441634b032SHong Zhang {
645cf1a0672SHong Zhang   Mat_MPIAIJ        *a   = (Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data;
646cf1a0672SHong Zhang   Mat_SeqAIJ        *ad  = (Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
647cf1a0672SHong Zhang   Mat_SeqAIJ        *cd  = (Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data;
648cf1a0672SHong Zhang   PetscInt          *adi = ad->i,*adj,*aoi=ao->i,*aoj;
649cf1a0672SHong Zhang   PetscScalar       *ada,*aoa,*cda=cd->a,*coa=co->a;
650cf1a0672SHong Zhang   Mat_SeqAIJ        *p_loc,*p_oth;
651cf1a0672SHong Zhang   PetscInt          *pi_loc,*pj_loc,*pi_oth,*pj_oth,*pj;
65229825010SHong Zhang   PetscScalar       *pa_loc,*pa_oth,*pa,valtmp,*ca;
65329825010SHong Zhang   PetscInt          cm    = C->rmap->n,anz,pnz;
6546718818eSStefano Zampini   Mat_APMPI         *ptap;
65580da8df7SHong Zhang   PetscScalar       *apa_sparse;
656ce496241SStefano Zampini   const PetscScalar *dummy;
657cf1a0672SHong Zhang   PetscInt          *api,*apj,*apJ,i,j,k,row;
65829825010SHong Zhang   PetscInt          cstart = C->cmap->rstart;
65929825010SHong Zhang   PetscInt          cdnz,conz,k0,k1,nextp;
660a7c7454dSHong Zhang   MPI_Comm          comm;
661a7c7454dSHong Zhang   PetscMPIInt       size;
6621634b032SHong Zhang 
6631634b032SHong Zhang   PetscFunctionBegin;
6646718818eSStefano Zampini   MatCheckProduct(C,3);
6656718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
66628b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
6679566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
6689566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
6692c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!ptap->P_oth && size>1,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"AP cannot be reused. Do not call MatProductClear()");
670a7c7454dSHong Zhang 
67165e4b4d4SStefano Zampini   /* flag CPU mask for C */
67265e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
67365e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
67465e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
67565e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
67665e4b4d4SStefano Zampini #endif
67780da8df7SHong Zhang   apa_sparse = ptap->apa;
67880da8df7SHong Zhang 
679cf1a0672SHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
680cf1a0672SHong Zhang   /*-----------------------------------------------------*/
681cf1a0672SHong Zhang   /* update numerical values of P_oth and P_loc */
6829566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
6839566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc));
684cf1a0672SHong Zhang 
685cf1a0672SHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
686cf1a0672SHong Zhang   /*----------------------------------------------------------*/
687cf1a0672SHong Zhang   /* get data from symbolic products */
688cf1a0672SHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
689cf1a0672SHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j; pa_loc = p_loc->a;
690a7c7454dSHong Zhang   if (size >1) {
691a7c7454dSHong Zhang     p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
692cf1a0672SHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j; pa_oth = p_oth->a;
69320e3dc75SHong Zhang   } else {
69420e3dc75SHong Zhang     p_oth = NULL; pi_oth = NULL; pj_oth = NULL; pa_oth = NULL;
695a7c7454dSHong Zhang   }
696cf1a0672SHong Zhang 
697ce496241SStefano Zampini   /* trigger copy to CPU */
6989566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A,&dummy));
6999566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A,&dummy));
7009566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B,&dummy));
7019566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B,&dummy));
70229825010SHong Zhang   api = ptap->api;
70329825010SHong Zhang   apj = ptap->apj;
704cf1a0672SHong Zhang   for (i=0; i<cm; i++) {
70529825010SHong Zhang     apJ = apj + api[i];
70629825010SHong Zhang 
707cf1a0672SHong Zhang     /* diagonal portion of A */
708cf1a0672SHong Zhang     anz = adi[i+1] - adi[i];
709cf1a0672SHong Zhang     adj = ad->j + adi[i];
710cf1a0672SHong Zhang     ada = ad->a + adi[i];
711cf1a0672SHong Zhang     for (j=0; j<anz; j++) {
712cf1a0672SHong Zhang       row = adj[j];
713cf1a0672SHong Zhang       pnz = pi_loc[row+1] - pi_loc[row];
714cf1a0672SHong Zhang       pj  = pj_loc + pi_loc[row];
715cf1a0672SHong Zhang       pa  = pa_loc + pi_loc[row];
71629825010SHong Zhang       /* perform sparse axpy */
717cf1a0672SHong Zhang       valtmp = ada[j];
71829825010SHong Zhang       nextp  = 0;
71929825010SHong Zhang       for (k=0; nextp<pnz; k++) {
72029825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
72129825010SHong Zhang           apa_sparse[k] += valtmp*pa[nextp++];
72229825010SHong Zhang         }
7231634b032SHong Zhang       }
7249566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0*pnz));
725cf1a0672SHong Zhang     }
7261634b032SHong Zhang 
727cf1a0672SHong Zhang     /* off-diagonal portion of A */
728cf1a0672SHong Zhang     anz = aoi[i+1] - aoi[i];
729cf1a0672SHong Zhang     aoj = ao->j + aoi[i];
730cf1a0672SHong Zhang     aoa = ao->a + aoi[i];
731cf1a0672SHong Zhang     for (j=0; j<anz; j++) {
732cf1a0672SHong Zhang       row = aoj[j];
733cf1a0672SHong Zhang       pnz = pi_oth[row+1] - pi_oth[row];
734cf1a0672SHong Zhang       pj  = pj_oth + pi_oth[row];
735cf1a0672SHong Zhang       pa  = pa_oth + pi_oth[row];
73629825010SHong Zhang       /* perform sparse axpy */
737cf1a0672SHong Zhang       valtmp = aoa[j];
73829825010SHong Zhang       nextp  = 0;
73929825010SHong Zhang       for (k=0; nextp<pnz; k++) {
74029825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
74129825010SHong Zhang           apa_sparse[k] += valtmp*pa[nextp++];
74229825010SHong Zhang         }
743cf1a0672SHong Zhang       }
7449566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0*pnz));
745cf1a0672SHong Zhang     }
7461634b032SHong Zhang 
747cf1a0672SHong Zhang     /* set values in C */
748cf1a0672SHong Zhang     cdnz = cd->i[i+1] - cd->i[i];
749cf1a0672SHong Zhang     conz = co->i[i+1] - co->i[i];
7501634b032SHong Zhang 
751910cf402Sprj-     /* 1st off-diagonal part of C */
752cf1a0672SHong Zhang     ca = coa + co->i[i];
753cf1a0672SHong Zhang     k  = 0;
754cf1a0672SHong Zhang     for (k0=0; k0<conz; k0++) {
755cf1a0672SHong Zhang       if (apJ[k] >= cstart) break;
75629825010SHong Zhang       ca[k0]        = apa_sparse[k];
75729825010SHong Zhang       apa_sparse[k] = 0.0;
758cf1a0672SHong Zhang       k++;
759cf1a0672SHong Zhang     }
7601634b032SHong Zhang 
761cf1a0672SHong Zhang     /* diagonal part of C */
762cf1a0672SHong Zhang     ca = cda + cd->i[i];
763cf1a0672SHong Zhang     for (k1=0; k1<cdnz; k1++) {
76429825010SHong Zhang       ca[k1]        = apa_sparse[k];
76529825010SHong Zhang       apa_sparse[k] = 0.0;
766cf1a0672SHong Zhang       k++;
767cf1a0672SHong Zhang     }
768cf1a0672SHong Zhang 
769910cf402Sprj-     /* 2nd off-diagonal part of C */
770cf1a0672SHong Zhang     ca = coa + co->i[i];
771cf1a0672SHong Zhang     for (; k0<conz; k0++) {
77229825010SHong Zhang       ca[k0]        = apa_sparse[k];
77329825010SHong Zhang       apa_sparse[k] = 0.0;
774cf1a0672SHong Zhang       k++;
775cf1a0672SHong Zhang     }
776cf1a0672SHong Zhang   }
7779566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
7789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
779cf1a0672SHong Zhang   PetscFunctionReturn(0);
780cf1a0672SHong Zhang }
781cf1a0672SHong Zhang 
7820fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */
7834222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A,Mat P,PetscReal fill,Mat C)
784cf1a0672SHong Zhang {
785ce94432eSBarry Smith   MPI_Comm           comm;
786a7c7454dSHong Zhang   PetscMPIInt        size;
7873cdca5ebSHong Zhang   Mat_APMPI          *ptap;
7880298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL,current_space=NULL;
7896718818eSStefano Zampini   Mat_MPIAIJ         *a  = (Mat_MPIAIJ*)A->data;
790cf1a0672SHong Zhang   Mat_SeqAIJ         *ad = (Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth;
7917dbaa2c6Sandi selinger   PetscInt           *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz;
792cf1a0672SHong Zhang   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart;
7938c78258cSHong Zhang   PetscInt           i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi,*lnk,apnz_max=1;
794e5ab8c0aSKarl Rupp   PetscInt           am=A->rmap->n,pn=P->cmap->n,pm=P->rmap->n,lsize=pn+20;
795cf1a0672SHong Zhang   PetscReal          afill;
796b92f168fSBarry Smith   MatType            mtype;
797cf1a0672SHong Zhang 
798cf1a0672SHong Zhang   PetscFunctionBegin;
7996718818eSStefano Zampini   MatCheckProduct(C,4);
80028b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
8019566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
8029566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
803a7c7454dSHong Zhang 
8043cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
8059566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
806cf1a0672SHong Zhang 
807cf1a0672SHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
8089566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
80919f0e57aSHong Zhang 
810cf1a0672SHong Zhang   /* get P_loc by taking all local rows of P */
8119566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc));
812cf1a0672SHong Zhang 
813cf1a0672SHong Zhang   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
814cf1a0672SHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j;
815a7c7454dSHong Zhang   if (size > 1) {
816a7c7454dSHong Zhang     p_oth  = (Mat_SeqAIJ*)(ptap->P_oth)->data;
81720e3dc75SHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j;
818968382fdSHong Zhang   } else {
81920e3dc75SHong Zhang     p_oth  = NULL;
82020e3dc75SHong Zhang     pi_oth = NULL; pj_oth = NULL;
821a7c7454dSHong Zhang   }
822cf1a0672SHong Zhang 
823cf1a0672SHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
824cf1a0672SHong Zhang   /*-------------------------------------------------------------------*/
8259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&api));
826cf1a0672SHong Zhang   ptap->api = api;
827cf1a0672SHong Zhang   api[0]    = 0;
828cf1a0672SHong Zhang 
8299566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(lsize,&lnk));
830cf1a0672SHong Zhang 
831cf1a0672SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
8329566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space));
833cf1a0672SHong Zhang   current_space = free_space;
834d0609cedSBarry Smith   MatPreallocateBegin(comm,am,pn,dnz,onz);
835cf1a0672SHong Zhang   for (i=0; i<am; i++) {
836cf1a0672SHong Zhang     /* diagonal portion of A */
837cf1a0672SHong Zhang     nzi = adi[i+1] - adi[i];
838cf1a0672SHong Zhang     for (j=0; j<nzi; j++) {
839cf1a0672SHong Zhang       row  = *adj++;
840cf1a0672SHong Zhang       pnz  = pi_loc[row+1] - pi_loc[row];
841cf1a0672SHong Zhang       Jptr = pj_loc + pi_loc[row];
8428a210135Sandi selinger       /* Expand list if it is not long enough */
8438328dd82Sandi selinger       if (pnz+apnz_max > lsize) {
8448328dd82Sandi selinger         lsize = pnz+apnz_max;
8459566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8468a210135Sandi selinger       }
847cf1a0672SHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
8489566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz,Jptr,lnk));
8498a210135Sandi selinger       apnz     = *lnk; /* The first element in the list is the number of items in the list */
8508a210135Sandi selinger       api[i+1] = api[i] + apnz;
8518c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
852cf1a0672SHong Zhang     }
853cf1a0672SHong Zhang     /* off-diagonal portion of A */
854cf1a0672SHong Zhang     nzi = aoi[i+1] - aoi[i];
855cf1a0672SHong Zhang     for (j=0; j<nzi; j++) {
856cf1a0672SHong Zhang       row  = *aoj++;
857cf1a0672SHong Zhang       pnz  = pi_oth[row+1] - pi_oth[row];
858cf1a0672SHong Zhang       Jptr = pj_oth + pi_oth[row];
8598a210135Sandi selinger       /* Expand list if it is not long enough */
8608328dd82Sandi selinger       if (pnz+apnz_max > lsize) {
8618328dd82Sandi selinger         lsize = pnz + apnz_max;
8629566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8638a210135Sandi selinger       }
8648a210135Sandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
8659566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz,Jptr,lnk));
8668a210135Sandi selinger       apnz     = *lnk;  /* The first element in the list is the number of items in the list */
8678a210135Sandi selinger       api[i+1] = api[i] + apnz;
8688c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
869cf1a0672SHong Zhang     }
8708c78258cSHong Zhang 
8718c78258cSHong Zhang     /* add missing diagonal entry */
8728c78258cSHong Zhang     if (C->force_diagonals) {
8738c78258cSHong Zhang       j = i + rstart; /* column index */
8749566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1,&j,lnk));
8758c78258cSHong Zhang     }
8768c78258cSHong Zhang 
877f84c536bSHong Zhang     apnz     = *lnk;
878cf1a0672SHong Zhang     api[i+1] = api[i] + apnz;
8798a210135Sandi selinger     if (apnz > apnz_max) apnz_max = apnz;
880cf1a0672SHong Zhang 
881cf1a0672SHong Zhang     /* if free space is not available, double the total space in the list */
882cf1a0672SHong Zhang     if (current_space->local_remaining<apnz) {
8839566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz,current_space->total_array_size),&current_space));
884cf1a0672SHong Zhang       nspacedouble++;
885cf1a0672SHong Zhang     }
886cf1a0672SHong Zhang 
887cf1a0672SHong Zhang     /* Copy data into free space, then initialize lnk */
8889566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(apnz,current_space->array,lnk));
8899566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz));
8902205254eSKarl Rupp 
891cf1a0672SHong Zhang     current_space->array           += apnz;
892cf1a0672SHong Zhang     current_space->local_used      += apnz;
893cf1a0672SHong Zhang     current_space->local_remaining -= apnz;
894cf1a0672SHong Zhang   }
895cf1a0672SHong Zhang 
896cf1a0672SHong Zhang   /* Allocate space for apj, initialize apj, and */
897cf1a0672SHong Zhang   /* destroy list of free space and other temporary array(s) */
8989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(api[am]+1,&ptap->apj));
899cf1a0672SHong Zhang   apj  = ptap->apj;
9009566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,ptap->apj));
9019566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
902cf1a0672SHong Zhang 
9034222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
904cf1a0672SHong Zhang   /*----------------------------------------------------*/
9059566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE));
9069566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,P));
9079566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
9089566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
9099566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
910d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
911cf1a0672SHong Zhang 
9124222ddf1SHong Zhang   /* malloc apa for assembly C */
9139566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(apnz_max,&ptap->apa));
91417f75172Sandi selinger 
9159566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
9169566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
9179566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
9189566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
919cf1a0672SHong Zhang 
9204222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
9214222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
922cf1a0672SHong Zhang 
9234222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
9246718818eSStefano Zampini   C->product->data    = ptap;
9256718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
926cf1a0672SHong Zhang 
927cf1a0672SHong Zhang   /* set MatInfo */
928118727c9SMark F. Adams   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
929cf1a0672SHong Zhang   if (afill < 1.0) afill = 1.0;
9304222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
9314222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
9324222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
933cf1a0672SHong Zhang 
934cf1a0672SHong Zhang #if defined(PETSC_USE_INFO)
935cf1a0672SHong Zhang   if (api[am]) {
9369566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill));
9379566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
938cf1a0672SHong Zhang   } else {
9399566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
940cf1a0672SHong Zhang   }
941cf1a0672SHong Zhang #endif
9421634b032SHong Zhang   PetscFunctionReturn(0);
9431634b032SHong Zhang }
944f96d37fcSHong Zhang 
945a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication.  */
946a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the    */
947a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once.     */
948a9d7e0ccSandi selinger static void Merge3SortedArrays(PetscInt  size1, PetscInt *in1,
949a9d7e0ccSandi selinger                                PetscInt  size2, PetscInt *in2,
950a9d7e0ccSandi selinger                                PetscInt  size3, PetscInt *in3,
951a9d7e0ccSandi selinger                                PetscInt *size4, PetscInt *out)
952a9d7e0ccSandi selinger {
953a9d7e0ccSandi selinger   int i = 0, j = 0, k = 0, l = 0;
954a9d7e0ccSandi selinger 
955a9d7e0ccSandi selinger   /* Traverse all three arrays */
956a9d7e0ccSandi selinger   while (i<size1 && j<size2 && k<size3) {
957a9d7e0ccSandi selinger     if (in1[i] < in2[j] && in1[i] < in3[k]) {
958a9d7e0ccSandi selinger       out[l++] = in1[i++];
959a9d7e0ccSandi selinger     }
960a9d7e0ccSandi selinger     else if (in2[j] < in1[i] && in2[j] < in3[k]) {
961a9d7e0ccSandi selinger       out[l++] = in2[j++];
962a9d7e0ccSandi selinger     }
963a9d7e0ccSandi selinger     else if (in3[k] < in1[i] && in3[k] < in2[j]) {
964a9d7e0ccSandi selinger       out[l++] = in3[k++];
965a9d7e0ccSandi selinger     }
966a9d7e0ccSandi selinger     else if (in1[i] == in2[j] && in1[i] < in3[k]) {
967a9d7e0ccSandi selinger       out[l++] = in1[i];
968a9d7e0ccSandi selinger       i++, j++;
969a9d7e0ccSandi selinger     }
970a9d7e0ccSandi selinger     else if (in1[i] == in3[k] && in1[i] < in2[j]) {
971a9d7e0ccSandi selinger       out[l++] = in1[i];
972a9d7e0ccSandi selinger       i++, k++;
973a9d7e0ccSandi selinger     }
974a9d7e0ccSandi selinger     else if (in3[k] == in2[j] && in2[j] < in1[i])  {
975a9d7e0ccSandi selinger       out[l++] = in2[j];
976a9d7e0ccSandi selinger       k++, j++;
977a9d7e0ccSandi selinger     }
978a9d7e0ccSandi selinger     else if (in1[i] == in2[j] && in1[i] == in3[k]) {
979a9d7e0ccSandi selinger       out[l++] = in1[i];
980a9d7e0ccSandi selinger       i++, j++, k++;
981a9d7e0ccSandi selinger     }
982a9d7e0ccSandi selinger   }
983a9d7e0ccSandi selinger 
984a9d7e0ccSandi selinger   /* Traverse two remaining arrays */
985a9d7e0ccSandi selinger   while (i<size1 && j<size2) {
986a9d7e0ccSandi selinger     if (in1[i] < in2[j]) {
987a9d7e0ccSandi selinger       out[l++] = in1[i++];
988a9d7e0ccSandi selinger     }
989a9d7e0ccSandi selinger     else if (in1[i] > in2[j]) {
990a9d7e0ccSandi selinger       out[l++] = in2[j++];
991a9d7e0ccSandi selinger     }
992a9d7e0ccSandi selinger     else {
993a9d7e0ccSandi selinger       out[l++] = in1[i];
994a9d7e0ccSandi selinger       i++, j++;
995a9d7e0ccSandi selinger     }
996a9d7e0ccSandi selinger   }
997a9d7e0ccSandi selinger 
998a9d7e0ccSandi selinger   while (i<size1 && k<size3) {
999a9d7e0ccSandi selinger     if (in1[i] < in3[k]) {
1000a9d7e0ccSandi selinger       out[l++] = in1[i++];
1001a9d7e0ccSandi selinger     }
1002a9d7e0ccSandi selinger     else if (in1[i] > in3[k]) {
1003a9d7e0ccSandi selinger       out[l++] = in3[k++];
1004a9d7e0ccSandi selinger     }
1005a9d7e0ccSandi selinger     else {
1006a9d7e0ccSandi selinger       out[l++] = in1[i];
1007a9d7e0ccSandi selinger       i++, k++;
1008a9d7e0ccSandi selinger     }
1009a9d7e0ccSandi selinger   }
1010a9d7e0ccSandi selinger 
1011a9d7e0ccSandi selinger   while (k<size3 && j<size2)  {
1012a9d7e0ccSandi selinger     if (in3[k] < in2[j]) {
1013a9d7e0ccSandi selinger       out[l++] = in3[k++];
1014a9d7e0ccSandi selinger     }
1015a9d7e0ccSandi selinger     else if (in3[k] > in2[j]) {
1016a9d7e0ccSandi selinger       out[l++] = in2[j++];
1017a9d7e0ccSandi selinger     }
1018a9d7e0ccSandi selinger     else {
1019a9d7e0ccSandi selinger       out[l++] = in3[k];
1020a9d7e0ccSandi selinger       k++, j++;
1021a9d7e0ccSandi selinger     }
1022a9d7e0ccSandi selinger   }
1023a9d7e0ccSandi selinger 
1024a9d7e0ccSandi selinger   /* Traverse one remaining array */
1025a9d7e0ccSandi selinger   while (i<size1) out[l++] = in1[i++];
1026a9d7e0ccSandi selinger   while (j<size2) out[l++] = in2[j++];
1027a9d7e0ccSandi selinger   while (k<size3) out[l++] = in3[k++];
1028a9d7e0ccSandi selinger 
1029a9d7e0ccSandi selinger   *size4 = l;
1030a9d7e0ccSandi selinger }
1031a9d7e0ccSandi selinger 
103273b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and  */
103373b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential)      */
103473b67375Sandi selinger /* matrix-matrix multiplications.  */
10354222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C)
1036a9d7e0ccSandi selinger {
1037a9d7e0ccSandi selinger   MPI_Comm           comm;
1038a9d7e0ccSandi selinger   PetscMPIInt        size;
10393cdca5ebSHong Zhang   Mat_APMPI          *ptap;
1040a9d7e0ccSandi selinger   PetscFreeSpaceList free_space_diag=NULL, current_space=NULL;
1041a9d7e0ccSandi selinger   Mat_MPIAIJ         *a  =(Mat_MPIAIJ*)A->data;
1042a9d7e0ccSandi selinger   Mat_SeqAIJ         *ad =(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc;
1043a9d7e0ccSandi selinger   Mat_MPIAIJ         *p  =(Mat_MPIAIJ*)P->data;
1044a9d7e0ccSandi selinger   Mat_SeqAIJ         *adpd_seq, *p_off, *aopoth_seq;
1045a9d7e0ccSandi selinger   PetscInt           adponz, adpdnz;
10467dbaa2c6Sandi selinger   PetscInt           *pi_loc,*dnz,*onz;
1047a9d7e0ccSandi selinger   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,rstart=A->rmap->rstart;
1048a9d7e0ccSandi selinger   PetscInt           *lnk,i, i1=0,pnz,row,*adpoi,*adpoj, *api, *adpoJ, *aopJ, *apJ,*Jptr, aopnz, nspacedouble=0,j,nzi,
1049a9d7e0ccSandi selinger                      *apj,apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj;
1050a016958eSandi selinger   PetscInt           am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n, p_colstart, p_colend;
1051a9d7e0ccSandi selinger   PetscBT            lnkbt;
1052a9d7e0ccSandi selinger   PetscReal          afill;
1053a9d7e0ccSandi selinger   PetscMPIInt        rank;
1054a9d7e0ccSandi selinger   Mat                adpd, aopoth;
1055b92f168fSBarry Smith   MatType            mtype;
1056e83e5f86SFande Kong   const char         *prefix;
1057a9d7e0ccSandi selinger 
1058a9d7e0ccSandi selinger   PetscFunctionBegin;
10596718818eSStefano Zampini   MatCheckProduct(C,4);
106028b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
10619566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
10629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
10639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
10649566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend));
1065a9d7e0ccSandi selinger 
10663cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
10679566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1068a9d7e0ccSandi selinger 
1069a9d7e0ccSandi selinger   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
10709566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
1071a9d7e0ccSandi selinger 
1072a9d7e0ccSandi selinger   /* get P_loc by taking all local rows of P */
10739566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc));
1074a9d7e0ccSandi selinger 
1075a9d7e0ccSandi selinger   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
1076a9d7e0ccSandi selinger   pi_loc = p_loc->i;
1077a9d7e0ccSandi selinger 
1078a9d7e0ccSandi selinger   /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */
10799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&api));
10809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&adpoi));
1081a9d7e0ccSandi selinger 
1082a9d7e0ccSandi selinger   adpoi[0]    = 0;
1083a9d7e0ccSandi selinger   ptap->api = api;
1084a9d7e0ccSandi selinger   api[0] = 0;
1085a9d7e0ccSandi selinger 
1086a9d7e0ccSandi selinger   /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */
10879566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN,pN,&lnk,&lnkbt));
1088d0609cedSBarry Smith   MatPreallocateBegin(comm,am,pn,dnz,onz);
1089a9d7e0ccSandi selinger 
1090a9d7e0ccSandi selinger   /* Symbolic calc of A_loc_diag * P_loc_diag */
10919566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A,&prefix));
10929566063dSJacob Faibussowitsch   PetscCall(MatProductCreate(a->A,p->A,NULL,&adpd));
10939566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A,&prefix));
10949566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(adpd,prefix));
10959566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(adpd,"inner_diag_"));
10964222ddf1SHong Zhang 
10979566063dSJacob Faibussowitsch   PetscCall(MatProductSetType(adpd,MATPRODUCT_AB));
10989566063dSJacob Faibussowitsch   PetscCall(MatProductSetAlgorithm(adpd,"sorted"));
10999566063dSJacob Faibussowitsch   PetscCall(MatProductSetFill(adpd,fill));
11009566063dSJacob Faibussowitsch   PetscCall(MatProductSetFromOptions(adpd));
11018c78258cSHong Zhang 
11028c78258cSHong Zhang   adpd->force_diagonals = C->force_diagonals;
11039566063dSJacob Faibussowitsch   PetscCall(MatProductSymbolic(adpd));
11044222ddf1SHong Zhang 
1105a9d7e0ccSandi selinger   adpd_seq = (Mat_SeqAIJ*)((adpd)->data);
1106a9d7e0ccSandi selinger   adpdi = adpd_seq->i; adpdj = adpd_seq->j;
1107a9d7e0ccSandi selinger   p_off = (Mat_SeqAIJ*)((p->B)->data);
1108a9d7e0ccSandi selinger   poff_i = p_off->i; poff_j = p_off->j;
1109a9d7e0ccSandi selinger 
111073b67375Sandi selinger   /* j_temp stores indices of a result row before they are added to the linked list */
11119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pN+2,&j_temp));
1112a9d7e0ccSandi selinger 
1113a9d7e0ccSandi selinger   /* Symbolic calc of the A_diag * p_loc_off */
1114a9d7e0ccSandi selinger   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
11159566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space_diag));
1116a9d7e0ccSandi selinger   current_space = free_space_diag;
1117a9d7e0ccSandi selinger 
1118a9d7e0ccSandi selinger   for (i=0; i<am; i++) {
1119a9d7e0ccSandi selinger     /* A_diag * P_loc_off */
1120a9d7e0ccSandi selinger     nzi = adi[i+1] - adi[i];
1121a9d7e0ccSandi selinger     for (j=0; j<nzi; j++) {
1122a9d7e0ccSandi selinger       row  = *adj++;
1123a9d7e0ccSandi selinger       pnz  = poff_i[row+1] - poff_i[row];
1124a9d7e0ccSandi selinger       Jptr = poff_j + poff_i[row];
1125a9d7e0ccSandi selinger       for (i1 = 0; i1 < pnz; i1++) {
1126a9d7e0ccSandi selinger         j_temp[i1] = p->garray[Jptr[i1]];
1127a9d7e0ccSandi selinger       }
1128a9d7e0ccSandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
11299566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz,j_temp,lnk,lnkbt));
1130a9d7e0ccSandi selinger     }
1131a9d7e0ccSandi selinger 
1132a9d7e0ccSandi selinger     adponz     = lnk[0];
1133a9d7e0ccSandi selinger     adpoi[i+1] = adpoi[i] + adponz;
1134a9d7e0ccSandi selinger 
1135a9d7e0ccSandi selinger     /* if free space is not available, double the total space in the list */
1136a9d7e0ccSandi selinger     if (current_space->local_remaining<adponz) {
11379566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz,current_space->total_array_size),&current_space));
1138a9d7e0ccSandi selinger       nspacedouble++;
1139a9d7e0ccSandi selinger     }
1140a9d7e0ccSandi selinger 
1141a9d7e0ccSandi selinger     /* Copy data into free space, then initialize lnk */
11429566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN,adponz,current_space->array,lnk,lnkbt));
1143a9d7e0ccSandi selinger 
1144a9d7e0ccSandi selinger     current_space->array           += adponz;
1145a9d7e0ccSandi selinger     current_space->local_used      += adponz;
1146a9d7e0ccSandi selinger     current_space->local_remaining -= adponz;
1147a9d7e0ccSandi selinger   }
1148a9d7e0ccSandi selinger 
1149a9d7e0ccSandi selinger   /* Symbolic calc of A_off * P_oth */
11509566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(a->B,prefix));
11519566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(a->B,"inner_offdiag_"));
11529566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&aopoth));
11539566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth));
1154a9d7e0ccSandi selinger   aopoth_seq = (Mat_SeqAIJ*)((aopoth)->data);
1155a9d7e0ccSandi selinger   aopothi = aopoth_seq->i; aopothj = aopoth_seq->j;
1156a9d7e0ccSandi selinger 
1157a9d7e0ccSandi selinger   /* Allocate space for apj, adpj, aopj, ... */
1158a9d7e0ccSandi selinger   /* destroy lists of free space and other temporary array(s) */
1159a9d7e0ccSandi selinger 
11609566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am]+2, &ptap->apj));
11619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(adpoi[am]+2, &adpoj));
1162a9d7e0ccSandi selinger 
1163a9d7e0ccSandi selinger   /* Copy from linked list to j-array */
11649566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space_diag,adpoj));
11659566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk,lnkbt));
1166a9d7e0ccSandi selinger 
1167a9d7e0ccSandi selinger   adpoJ = adpoj;
1168a9d7e0ccSandi selinger   adpdJ = adpdj;
1169a9d7e0ccSandi selinger   aopJ = aopothj;
1170a9d7e0ccSandi selinger   apj  = ptap->apj;
1171a9d7e0ccSandi selinger   apJ = apj; /* still empty */
1172a9d7e0ccSandi selinger 
1173a9d7e0ccSandi selinger   /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */
1174a9d7e0ccSandi selinger   /* A_diag * P_loc_diag to get A*P */
1175a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1176a9d7e0ccSandi selinger     aopnz  =  aopothi[i+1] -  aopothi[i];
1177a9d7e0ccSandi selinger     adponz = adpoi[i+1] - adpoi[i];
1178a9d7e0ccSandi selinger     adpdnz = adpdi[i+1] - adpdi[i];
1179a9d7e0ccSandi selinger 
1180a9d7e0ccSandi selinger     /* Correct indices from A_diag*P_diag */
1181a9d7e0ccSandi selinger     for (i1 = 0; i1 < adpdnz; i1++) {
1182a016958eSandi selinger       adpdJ[i1] += p_colstart;
1183a9d7e0ccSandi selinger     }
1184a9d7e0ccSandi selinger     /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */
1185a9d7e0ccSandi selinger     Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ);
11869566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+rstart, apnz, apJ, dnz, onz));
1187a9d7e0ccSandi selinger 
1188a9d7e0ccSandi selinger     aopJ += aopnz;
1189a9d7e0ccSandi selinger     adpoJ += adponz;
1190a9d7e0ccSandi selinger     adpdJ += adpdnz;
1191a9d7e0ccSandi selinger     apJ += apnz;
1192a9d7e0ccSandi selinger     api[i+1] = api[i] + apnz;
1193a9d7e0ccSandi selinger   }
1194a9d7e0ccSandi selinger 
1195a9d7e0ccSandi selinger   /* malloc apa to store dense row A[i,:]*P */
11969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN+2,&ptap->apa));
1197a9d7e0ccSandi selinger 
11984222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
11999566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE));
12009566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,P));
12019566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
12029566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
12039566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
1204d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
120517f75172Sandi selinger 
12069566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
12079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
12089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
12099566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
121017f75172Sandi selinger 
12114222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
12124222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
1213a9d7e0ccSandi selinger 
12144222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
12156718818eSStefano Zampini   C->product->data    = ptap;
12166718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
1217a9d7e0ccSandi selinger 
1218a9d7e0ccSandi selinger   /* set MatInfo */
121973b67375Sandi selinger   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
122073b67375Sandi selinger   if (afill < 1.0) afill = 1.0;
12214222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
12224222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
12234222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1224a9d7e0ccSandi selinger 
1225a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO)
1226a9d7e0ccSandi selinger   if (api[am]) {
12279566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill));
12289566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
1229a9d7e0ccSandi selinger   } else {
12309566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
1231a9d7e0ccSandi selinger   }
1232a9d7e0ccSandi selinger #endif
1233a9d7e0ccSandi selinger 
12349566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&aopoth));
12359566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&adpd));
12369566063dSJacob Faibussowitsch   PetscCall(PetscFree(j_temp));
12379566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoj));
12389566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoi));
1239a9d7e0ccSandi selinger   PetscFunctionReturn(0);
1240a9d7e0ccSandi selinger }
1241a9d7e0ccSandi selinger 
1242f96d37fcSHong Zhang /*-------------------------------------------------------------------------*/
1243c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */
1244c216dbf3SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P,Mat A,Mat C)
1245c216dbf3SHong Zhang {
12466718818eSStefano Zampini   Mat_APMPI      *ptap;
124760552ceaSHong Zhang   Mat            Pt;
1248c216dbf3SHong Zhang 
1249c216dbf3SHong Zhang   PetscFunctionBegin;
12506718818eSStefano Zampini   MatCheckProduct(C,3);
12516718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
125228b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
125328b400f6SJacob Faibussowitsch   PetscCheck(ptap->Pt,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
125460552ceaSHong Zhang 
125560552ceaSHong Zhang   Pt   = ptap->Pt;
12569566063dSJacob Faibussowitsch   PetscCall(MatTranspose(P,MAT_REUSE_MATRIX,&Pt));
12579566063dSJacob Faibussowitsch   PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt,A,C));
1258f96d37fcSHong Zhang   PetscFunctionReturn(0);
1259f96d37fcSHong Zhang }
1260f96d37fcSHong Zhang 
1261c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */
12624222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P,Mat A,PetscReal fill,Mat C)
1263912837bbSHong Zhang {
12643cdca5ebSHong Zhang   Mat_APMPI           *ptap;
12656718818eSStefano Zampini   Mat_MPIAIJ          *p=(Mat_MPIAIJ*)P->data;
1266912837bbSHong Zhang   MPI_Comm            comm;
1267912837bbSHong Zhang   PetscMPIInt         size,rank;
1268912837bbSHong Zhang   PetscFreeSpaceList  free_space=NULL,current_space=NULL;
12694ede91e3SHong Zhang   PetscInt            pn=P->cmap->n,aN=A->cmap->N,an=A->cmap->n;
127069be949aSStefano Zampini   PetscInt            *lnk,i,k,nsend,rstart;
1271912837bbSHong Zhang   PetscBT             lnkbt;
1272ec4bef21SJose E. Roman   PetscMPIInt         tagi,tagj,*len_si,*len_s,*len_ri,nrecv;
1273ec4bef21SJose E. Roman   PETSC_UNUSED PetscMPIInt icompleted=0;
12748c78258cSHong Zhang   PetscInt            **buf_rj,**buf_ri,**buf_ri_k,row,ncols,*cols;
12757f3e1f30SHong Zhang   PetscInt            len,proc,*dnz,*onz,*owners,nzi;
1276912837bbSHong Zhang   PetscInt            nrows,*buf_s,*buf_si,*buf_si_i,**nextrow,**nextci;
1277912837bbSHong Zhang   MPI_Request         *swaits,*rwaits;
1278912837bbSHong Zhang   MPI_Status          *sstatus,rstatus;
1279912837bbSHong Zhang   PetscLayout         rowmap;
1280912837bbSHong Zhang   PetscInt            *owners_co,*coi,*coj;    /* i and j array of (p->B)^T*A*P - used in the communication */
1281912837bbSHong Zhang   PetscMPIInt         *len_r,*id_r;    /* array of length of comm->size, store send/recv matrix values */
12827f3e1f30SHong Zhang   PetscInt            *Jptr,*prmap=p->garray,con,j,Crmax;
12834ede91e3SHong Zhang   Mat_SeqAIJ          *a_loc,*c_loc,*c_oth;
1284912837bbSHong Zhang   PetscTable          ta;
1285b92f168fSBarry Smith   MatType             mtype;
1286e83e5f86SFande Kong   const char          *prefix;
1287912837bbSHong Zhang 
1288912837bbSHong Zhang   PetscFunctionBegin;
12899566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
12909566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
12919566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
1292912837bbSHong Zhang 
12934222ddf1SHong Zhang   /* create symbolic parallel matrix C */
12949566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
12959566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
1296912837bbSHong Zhang 
12974222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
1298912837bbSHong Zhang 
12993cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
13009566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1301912837bbSHong Zhang   ptap->reuse = MAT_INITIAL_MATRIX;
1302912837bbSHong Zhang 
1303912837bbSHong Zhang   /* (0) compute Rd = Pd^T, Ro = Po^T  */
1304912837bbSHong Zhang   /* --------------------------------- */
13059566063dSJacob Faibussowitsch   PetscCall(MatTranspose_SeqAIJ(p->A,MAT_INITIAL_MATRIX,&ptap->Rd));
13069566063dSJacob Faibussowitsch   PetscCall(MatTranspose_SeqAIJ(p->B,MAT_INITIAL_MATRIX,&ptap->Ro));
1307912837bbSHong Zhang 
1308669e9c86SHong Zhang   /* (1) compute symbolic A_loc */
1309669e9c86SHong Zhang   /* ---------------------------*/
13109566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&ptap->A_loc));
1311912837bbSHong Zhang 
13124ede91e3SHong Zhang   /* (2-1) compute symbolic C_oth = Ro*A_loc  */
1313912837bbSHong Zhang   /* ------------------------------------ */
13149566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A,&prefix));
13159566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Ro,prefix));
13169566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Ro,"inner_offdiag_"));
13179566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&ptap->C_oth));
13189566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro,ptap->A_loc,fill,ptap->C_oth));
1319912837bbSHong Zhang 
1320912837bbSHong Zhang   /* (3) send coj of C_oth to other processors  */
1321912837bbSHong Zhang   /* ------------------------------------------ */
1322912837bbSHong Zhang   /* determine row ownership */
13239566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm,&rowmap));
1324912837bbSHong Zhang   rowmap->n  = pn;
1325912837bbSHong Zhang   rowmap->bs = 1;
13269566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rowmap));
1327912837bbSHong Zhang   owners = rowmap->range;
1328912837bbSHong Zhang 
1329912837bbSHong Zhang   /* determine the number of messages to send, their lengths */
13309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(size,&len_s,size,&len_si,size,&sstatus,size+2,&owners_co));
13319566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_s,size));
13329566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_si,size));
1333912837bbSHong Zhang 
1334912837bbSHong Zhang   c_oth = (Mat_SeqAIJ*)ptap->C_oth->data;
1335912837bbSHong Zhang   coi   = c_oth->i; coj = c_oth->j;
1336912837bbSHong Zhang   con   = ptap->C_oth->rmap->n;
1337912837bbSHong Zhang   proc  = 0;
1338912837bbSHong Zhang   for (i=0; i<con; i++) {
1339912837bbSHong Zhang     while (prmap[i] >= owners[proc+1]) proc++;
13407f3e1f30SHong Zhang     len_si[proc]++;               /* num of rows in Co(=Pt*A) to be sent to [proc] */
1341912837bbSHong Zhang     len_s[proc] += coi[i+1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */
1342912837bbSHong Zhang   }
1343912837bbSHong Zhang 
1344912837bbSHong Zhang   len          = 0; /* max length of buf_si[], see (4) */
1345912837bbSHong Zhang   owners_co[0] = 0;
1346912837bbSHong Zhang   nsend        = 0;
1347912837bbSHong Zhang   for (proc=0; proc<size; proc++) {
1348912837bbSHong Zhang     owners_co[proc+1] = owners_co[proc] + len_si[proc];
1349912837bbSHong Zhang     if (len_s[proc]) {
1350912837bbSHong Zhang       nsend++;
1351912837bbSHong Zhang       len_si[proc] = 2*(len_si[proc] + 1); /* length of buf_si to be sent to [proc] */
1352912837bbSHong Zhang       len         += len_si[proc];
1353912837bbSHong Zhang     }
1354912837bbSHong Zhang   }
1355912837bbSHong Zhang 
1356912837bbSHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
13579566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm,NULL,len_s,&nrecv));
13589566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm,nsend,nrecv,len_s,len_si,&id_r,&len_r,&len_ri));
1359912837bbSHong Zhang 
1360912837bbSHong Zhang   /* post the Irecv and Isend of coj */
13619566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&tagj));
13629566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm,tagj,nrecv,id_r,len_r,&buf_rj,&rwaits));
13639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend+1,&swaits));
1364912837bbSHong Zhang   for (proc=0, k=0; proc<size; proc++) {
1365912837bbSHong Zhang     if (!len_s[proc]) continue;
1366912837bbSHong Zhang     i    = owners_co[proc];
13679566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coj+coi[i],len_s[proc],MPIU_INT,proc,tagj,comm,swaits+k));
1368912837bbSHong Zhang     k++;
1369912837bbSHong Zhang   }
1370912837bbSHong Zhang 
13717f3e1f30SHong Zhang   /* (2-2) compute symbolic C_loc = Rd*A_loc */
1372912837bbSHong Zhang   /* ---------------------------------------- */
13739566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Rd,prefix));
13749566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Rd,"inner_diag_"));
13759566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&ptap->C_loc));
13769566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd,ptap->A_loc,fill,ptap->C_loc));
1377912837bbSHong Zhang   c_loc = (Mat_SeqAIJ*)ptap->C_loc->data;
1378912837bbSHong Zhang 
1379912837bbSHong Zhang   /* receives coj are complete */
1380912837bbSHong Zhang   for (i=0; i<nrecv; i++) {
13819566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(nrecv,rwaits,&icompleted,&rstatus));
1382912837bbSHong Zhang   }
13839566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
13849566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend,swaits,sstatus));
1385912837bbSHong Zhang 
1386912837bbSHong Zhang   /* add received column indices into ta to update Crmax */
13874ede91e3SHong Zhang   a_loc = (Mat_SeqAIJ*)(ptap->A_loc)->data;
1388669e9c86SHong Zhang 
1389669e9c86SHong Zhang   /* create and initialize a linked list */
13909566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(an,aN,&ta)); /* for compute Crmax */
13914ede91e3SHong Zhang   MatRowMergeMax_SeqAIJ(a_loc,ptap->A_loc->rmap->N,ta);
1392669e9c86SHong Zhang 
1393912837bbSHong Zhang   for (k=0; k<nrecv; k++) {/* k-th received message */
1394912837bbSHong Zhang     Jptr = buf_rj[k];
1395912837bbSHong Zhang     for (j=0; j<len_r[k]; j++) {
13969566063dSJacob Faibussowitsch       PetscCall(PetscTableAdd(ta,*(Jptr+j)+1,1,INSERT_VALUES));
1397912837bbSHong Zhang     }
1398912837bbSHong Zhang   }
13999566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta,&Crmax));
14009566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&ta));
1401912837bbSHong Zhang 
1402912837bbSHong Zhang   /* (4) send and recv coi */
1403912837bbSHong Zhang   /*-----------------------*/
14049566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&tagi));
14059566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm,tagi,nrecv,id_r,len_ri,&buf_ri,&rwaits));
14069566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len+1,&buf_s));
1407912837bbSHong Zhang   buf_si = buf_s;  /* points to the beginning of k-th msg to be sent */
1408912837bbSHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1409912837bbSHong Zhang     if (!len_s[proc]) continue;
1410912837bbSHong Zhang     /* form outgoing message for i-structure:
1411912837bbSHong Zhang          buf_si[0]:                 nrows to be sent
1412912837bbSHong Zhang                [1:nrows]:           row index (global)
1413912837bbSHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1414912837bbSHong Zhang     */
1415912837bbSHong Zhang     /*-------------------------------------------*/
1416912837bbSHong Zhang     nrows       = len_si[proc]/2 - 1; /* num of rows in Co to be sent to [proc] */
1417912837bbSHong Zhang     buf_si_i    = buf_si + nrows+1;
1418912837bbSHong Zhang     buf_si[0]   = nrows;
1419912837bbSHong Zhang     buf_si_i[0] = 0;
1420912837bbSHong Zhang     nrows       = 0;
1421912837bbSHong Zhang     for (i=owners_co[proc]; i<owners_co[proc+1]; i++) {
1422912837bbSHong Zhang       nzi = coi[i+1] - coi[i];
1423912837bbSHong Zhang       buf_si_i[nrows+1] = buf_si_i[nrows] + nzi;  /* i-structure */
1424912837bbSHong Zhang       buf_si[nrows+1]   = prmap[i] -owners[proc]; /* local row index */
1425912837bbSHong Zhang       nrows++;
1426912837bbSHong Zhang     }
14279566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si,len_si[proc],MPIU_INT,proc,tagi,comm,swaits+k));
1428912837bbSHong Zhang     k++;
1429912837bbSHong Zhang     buf_si += len_si[proc];
1430912837bbSHong Zhang   }
1431912837bbSHong Zhang   for (i=0; i<nrecv; i++) {
14329566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(nrecv,rwaits,&icompleted,&rstatus));
1433912837bbSHong Zhang   }
14349566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
14359566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend,swaits,sstatus));
1436912837bbSHong Zhang 
14379566063dSJacob Faibussowitsch   PetscCall(PetscFree4(len_s,len_si,sstatus,owners_co));
14389566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
14399566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
14409566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1441912837bbSHong Zhang 
14424222ddf1SHong Zhang   /* (5) compute the local portion of C      */
1443912837bbSHong Zhang   /* ------------------------------------------ */
14444222ddf1SHong Zhang   /* set initial free space to be Crmax, sufficient for holding nozeros in each row of C */
14459566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(Crmax,&free_space));
1446912837bbSHong Zhang   current_space = free_space;
1447912837bbSHong Zhang 
14489566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(nrecv,&buf_ri_k,nrecv,&nextrow,nrecv,&nextci));
1449912837bbSHong Zhang   for (k=0; k<nrecv; k++) {
1450912837bbSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1451912837bbSHong Zhang     nrows       = *buf_ri_k[k];
1452912837bbSHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;  /* next row number of k-th recved i-structure */
1453a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1454912837bbSHong Zhang   }
1455912837bbSHong Zhang 
1456d0609cedSBarry Smith   MatPreallocateBegin(comm,pn,an,dnz,onz);
14579566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(Crmax,aN,&lnk,&lnkbt));
14588c78258cSHong Zhang   for (i=0; i<pn; i++) { /* for each local row of C */
14594222ddf1SHong Zhang     /* add C_loc into C */
1460912837bbSHong Zhang     nzi  = c_loc->i[i+1] - c_loc->i[i];
1461912837bbSHong Zhang     Jptr = c_loc->j + c_loc->i[i];
14629566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedAddSorted(nzi,Jptr,lnk,lnkbt));
1463912837bbSHong Zhang 
1464912837bbSHong Zhang     /* add received col data into lnk */
1465912837bbSHong Zhang     for (k=0; k<nrecv; k++) { /* k-th received message */
1466912837bbSHong Zhang       if (i == *nextrow[k]) { /* i-th row */
1467912837bbSHong Zhang         nzi  = *(nextci[k]+1) - *nextci[k];
1468912837bbSHong Zhang         Jptr = buf_rj[k] + *nextci[k];
14699566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted(nzi,Jptr,lnk,lnkbt));
1470912837bbSHong Zhang         nextrow[k]++; nextci[k]++;
1471912837bbSHong Zhang       }
1472912837bbSHong Zhang     }
14738c78258cSHong Zhang 
14748c78258cSHong Zhang     /* add missing diagonal entry */
14758c78258cSHong Zhang     if (C->force_diagonals) {
14768c78258cSHong Zhang       k = i + owners[rank]; /* column index */
14779566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1,&k,lnk,lnkbt));
14788c78258cSHong Zhang     }
14798c78258cSHong Zhang 
1480912837bbSHong Zhang     nzi = lnk[0];
1481912837bbSHong Zhang 
1482912837bbSHong Zhang     /* copy data into free space, then initialize lnk */
14839566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(aN,nzi,current_space->array,lnk,lnkbt));
14849566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+owners[rank],nzi,current_space->array,dnz,onz));
1485912837bbSHong Zhang   }
14869566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k,nextrow,nextci));
14879566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk,lnkbt));
14889566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceDestroy(free_space));
1489912837bbSHong Zhang 
1490912837bbSHong Zhang   /* local sizes and preallocation */
14919566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,pn,an,PETSC_DETERMINE,PETSC_DETERMINE));
14929566063dSJacob Faibussowitsch   if (P->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->rmap,P->cmap->bs));
14939566063dSJacob Faibussowitsch   if (A->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->cmap,A->cmap->bs));
14949566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
1495d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
1496912837bbSHong Zhang 
149769be949aSStefano Zampini   /* add C_loc and C_oth to C */
14989566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C,&rstart,NULL));
149969be949aSStefano Zampini   for (i=0; i<pn; i++) {
15008c78258cSHong Zhang     ncols = c_loc->i[i+1] - c_loc->i[i];
15018c78258cSHong Zhang     cols  = c_loc->j + c_loc->i[i];
15028c78258cSHong Zhang     row   = rstart + i;
15039566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,(const PetscInt*)&row,ncols,(const PetscInt*)cols,NULL,INSERT_VALUES));
15048c78258cSHong Zhang 
15058c78258cSHong Zhang     if (C->force_diagonals) {
15069566063dSJacob Faibussowitsch       PetscCall(MatSetValues(C,1,(const PetscInt*)&row,1,(const PetscInt*)&row,NULL,INSERT_VALUES));
15078c78258cSHong Zhang     }
150869be949aSStefano Zampini   }
150969be949aSStefano Zampini   for (i=0; i<con; i++) {
15108c78258cSHong Zhang     ncols = c_oth->i[i+1] - c_oth->i[i];
15118c78258cSHong Zhang     cols  = c_oth->j + c_oth->i[i];
15128c78258cSHong Zhang     row   = prmap[i];
15139566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,(const PetscInt*)&row,ncols,(const PetscInt*)cols,NULL,INSERT_VALUES));
151469be949aSStefano Zampini   }
15159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
15169566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
15179566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
151869be949aSStefano Zampini 
1519912837bbSHong Zhang   /* members in merge */
15209566063dSJacob Faibussowitsch   PetscCall(PetscFree(id_r));
15219566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_r));
15229566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri[0]));
15239566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri));
15249566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj[0]));
15259566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj));
15269566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rowmap));
1527912837bbSHong Zhang 
15284222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
15296718818eSStefano Zampini   C->product->data    = ptap;
15306718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
1531912837bbSHong Zhang   PetscFunctionReturn(0);
1532912837bbSHong Zhang }
1533912837bbSHong Zhang 
1534912837bbSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P,Mat A,Mat C)
1535912837bbSHong Zhang {
15366718818eSStefano Zampini   Mat_MPIAIJ        *p=(Mat_MPIAIJ*)P->data;
1537669e9c86SHong Zhang   Mat_SeqAIJ        *c_seq;
15386718818eSStefano Zampini   Mat_APMPI         *ptap;
1539669e9c86SHong Zhang   Mat               A_loc,C_loc,C_oth;
1540912837bbSHong Zhang   PetscInt          i,rstart,rend,cm,ncols,row;
1541912837bbSHong Zhang   const PetscInt    *cols;
1542912837bbSHong Zhang   const PetscScalar *vals;
1543912837bbSHong Zhang 
1544912837bbSHong Zhang   PetscFunctionBegin;
15456718818eSStefano Zampini   MatCheckProduct(C,3);
15466718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
154728b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
154828b400f6SJacob Faibussowitsch   PetscCheck(ptap->A_loc,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
15499566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(C));
1550912837bbSHong Zhang 
1551912837bbSHong Zhang   if (ptap->reuse == MAT_REUSE_MATRIX) {
1552669e9c86SHong Zhang     /* These matrices are obtained in MatTransposeMatMultSymbolic() */
1553669e9c86SHong Zhang     /* 1) get R = Pd^T, Ro = Po^T */
1554669e9c86SHong Zhang     /*----------------------------*/
15559566063dSJacob Faibussowitsch     PetscCall(MatTranspose_SeqAIJ(p->A,MAT_REUSE_MATRIX,&ptap->Rd));
15569566063dSJacob Faibussowitsch     PetscCall(MatTranspose_SeqAIJ(p->B,MAT_REUSE_MATRIX,&ptap->Ro));
1557669e9c86SHong Zhang 
1558669e9c86SHong Zhang     /* 2) compute numeric A_loc */
1559669e9c86SHong Zhang     /*--------------------------*/
15609566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMat(A,MAT_REUSE_MATRIX,&ptap->A_loc));
1561912837bbSHong Zhang   }
1562912837bbSHong Zhang 
1563669e9c86SHong Zhang   /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */
15644ede91e3SHong Zhang   A_loc = ptap->A_loc;
15659566063dSJacob Faibussowitsch   PetscCall(((ptap->C_loc)->ops->matmultnumeric)(ptap->Rd,A_loc,ptap->C_loc));
15669566063dSJacob Faibussowitsch   PetscCall(((ptap->C_oth)->ops->matmultnumeric)(ptap->Ro,A_loc,ptap->C_oth));
1567912837bbSHong Zhang   C_loc = ptap->C_loc;
1568912837bbSHong Zhang   C_oth = ptap->C_oth;
1569912837bbSHong Zhang 
157069be949aSStefano Zampini   /* add C_loc and C_oth to C */
15719566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C,&rstart,&rend));
1572912837bbSHong Zhang 
1573912837bbSHong Zhang   /* C_loc -> C */
1574912837bbSHong Zhang   cm    = C_loc->rmap->N;
1575912837bbSHong Zhang   c_seq = (Mat_SeqAIJ*)C_loc->data;
1576912837bbSHong Zhang   cols = c_seq->j;
1577912837bbSHong Zhang   vals = c_seq->a;
1578912837bbSHong Zhang   for (i=0; i<cm; i++) {
1579912837bbSHong Zhang     ncols = c_seq->i[i+1] - c_seq->i[i];
1580912837bbSHong Zhang     row = rstart + i;
15819566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,&row,ncols,cols,vals,ADD_VALUES));
1582912837bbSHong Zhang     cols += ncols; vals += ncols;
1583912837bbSHong Zhang   }
1584912837bbSHong Zhang 
1585912837bbSHong Zhang   /* Co -> C, off-processor part */
1586912837bbSHong Zhang   cm    = C_oth->rmap->N;
1587912837bbSHong Zhang   c_seq = (Mat_SeqAIJ*)C_oth->data;
1588912837bbSHong Zhang   cols  = c_seq->j;
1589912837bbSHong Zhang   vals  = c_seq->a;
1590912837bbSHong Zhang   for (i=0; i<cm; i++) {
1591912837bbSHong Zhang     ncols = c_seq->i[i+1] - c_seq->i[i];
1592912837bbSHong Zhang     row = p->garray[i];
15939566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,&row,ncols,cols,vals,ADD_VALUES));
1594912837bbSHong Zhang     cols += ncols; vals += ncols;
1595912837bbSHong Zhang   }
15969566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
15979566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
15989566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
1599912837bbSHong Zhang 
1600912837bbSHong Zhang   ptap->reuse = MAT_REUSE_MATRIX;
1601912837bbSHong Zhang   PetscFunctionReturn(0);
1602912837bbSHong Zhang }
1603912837bbSHong Zhang 
16046da69ca6SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P,Mat A,Mat C)
1605d6ab1dc0SHong Zhang {
1606d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
16076718818eSStefano Zampini   Mat_MPIAIJ          *p =(Mat_MPIAIJ*)P->data;
1608d6ab1dc0SHong Zhang   Mat_SeqAIJ          *pd=(Mat_SeqAIJ*)(p->A)->data,*po=(Mat_SeqAIJ*)(p->B)->data;
16093cdca5ebSHong Zhang   Mat_APMPI           *ptap;
1610e745005bSHong Zhang   PetscInt            *adj;
1611e745005bSHong Zhang   PetscInt            i,j,k,anz,pnz,row,*cj,nexta;
1612e745005bSHong Zhang   MatScalar           *ada,*ca,valtmp;
1613d6ab1dc0SHong Zhang   PetscInt            am=A->rmap->n,cm=C->rmap->n,pon=(p->B)->cmap->n;
1614ce94432eSBarry Smith   MPI_Comm            comm;
1615d6ab1dc0SHong Zhang   PetscMPIInt         size,rank,taga,*len_s;
1616d6ab1dc0SHong Zhang   PetscInt            *owners,proc,nrows,**buf_ri_k,**nextrow,**nextci;
1617d6ab1dc0SHong Zhang   PetscInt            **buf_ri,**buf_rj;
1618d6ab1dc0SHong Zhang   PetscInt            cnz=0,*bj_i,*bi,*bj,bnz,nextcj;  /* bi,bj,ba: local array of C(mpi mat) */
1619d6ab1dc0SHong Zhang   MPI_Request         *s_waits,*r_waits;
1620d6ab1dc0SHong Zhang   MPI_Status          *status;
1621d6ab1dc0SHong Zhang   MatScalar           **abuf_r,*ba_i,*pA,*coa,*ba;
1622ce496241SStefano Zampini   const PetscScalar   *dummy;
16234e201bd7SHong Zhang   PetscInt            *ai,*aj,*coi,*coj,*poJ,*pdJ;
1624d6ab1dc0SHong Zhang   Mat                 A_loc;
1625d6ab1dc0SHong Zhang   Mat_SeqAIJ          *a_loc;
1626d6ab1dc0SHong Zhang 
1627d6ab1dc0SHong Zhang   PetscFunctionBegin;
16286718818eSStefano Zampini   MatCheckProduct(C,3);
16296718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
163028b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
163128b400f6SJacob Faibussowitsch   PetscCheck(ptap->A_loc,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
16329566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
16339566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
16349566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
1635d6ab1dc0SHong Zhang 
1636d6ab1dc0SHong Zhang   merge = ptap->merge;
1637d6ab1dc0SHong Zhang 
1638e745005bSHong Zhang   /* 2) compute numeric C_seq = P_loc^T*A_loc */
1639e745005bSHong Zhang   /*------------------------------------------*/
1640d6ab1dc0SHong Zhang   /* get data from symbolic products */
1641d6ab1dc0SHong Zhang   coi    = merge->coi; coj = merge->coj;
16429566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(coi[pon]+1,&coa));
1643d6ab1dc0SHong Zhang   bi     = merge->bi; bj = merge->bj;
1644d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
16459566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bi[cm]+1,&ba));
1646d6ab1dc0SHong Zhang 
1647d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
1648d6ab1dc0SHong Zhang   A_loc = ptap->A_loc;
16499566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A,MAT_REUSE_MATRIX,&A_loc));
1650d6ab1dc0SHong Zhang   a_loc = (Mat_SeqAIJ*)(A_loc)->data;
1651d6ab1dc0SHong Zhang   ai    = a_loc->i;
1652d6ab1dc0SHong Zhang   aj    = a_loc->j;
1653d6ab1dc0SHong Zhang 
1654ce496241SStefano Zampini   /* trigger copy to CPU */
16559566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A,&dummy));
16569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A,&dummy));
16579566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B,&dummy));
16589566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B,&dummy));
1659d6ab1dc0SHong Zhang   for (i=0; i<am; i++) {
1660d6ab1dc0SHong Zhang     anz = ai[i+1] - ai[i];
1661d6ab1dc0SHong Zhang     adj = aj + ai[i];
1662d6ab1dc0SHong Zhang     ada = a_loc->a + ai[i];
1663d6ab1dc0SHong Zhang 
1664d6ab1dc0SHong Zhang     /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */
1665e745005bSHong Zhang     /*-------------------------------------------------------------*/
1666d6ab1dc0SHong Zhang     /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */
1667d6ab1dc0SHong Zhang     pnz = po->i[i+1] - po->i[i];
1668d6ab1dc0SHong Zhang     poJ = po->j + po->i[i];
1669d6ab1dc0SHong Zhang     pA  = po->a + po->i[i];
1670d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1671d6ab1dc0SHong Zhang       row = poJ[j];
1672d6ab1dc0SHong Zhang       cj  = coj + coi[row];
1673d6ab1dc0SHong Zhang       ca  = coa + coi[row];
1674e745005bSHong Zhang       /* perform sparse axpy */
1675e745005bSHong Zhang       nexta  = 0;
1676d6ab1dc0SHong Zhang       valtmp = pA[j];
1677e745005bSHong Zhang       for (k=0; nexta<anz; k++) {
1678e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1679e745005bSHong Zhang           ca[k] += valtmp*ada[nexta];
1680e745005bSHong Zhang           nexta++;
1681d6ab1dc0SHong Zhang         }
1682e745005bSHong Zhang       }
16839566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0*anz));
1684d6ab1dc0SHong Zhang     }
1685d6ab1dc0SHong Zhang 
1686d6ab1dc0SHong Zhang     /* put the value into Cd (diagonal part) */
1687d6ab1dc0SHong Zhang     pnz = pd->i[i+1] - pd->i[i];
1688d6ab1dc0SHong Zhang     pdJ = pd->j + pd->i[i];
1689d6ab1dc0SHong Zhang     pA  = pd->a + pd->i[i];
1690d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1691d6ab1dc0SHong Zhang       row = pdJ[j];
1692d6ab1dc0SHong Zhang       cj  = bj + bi[row];
1693d6ab1dc0SHong Zhang       ca  = ba + bi[row];
1694e745005bSHong Zhang       /* perform sparse axpy */
1695e745005bSHong Zhang       nexta  = 0;
1696d6ab1dc0SHong Zhang       valtmp = pA[j];
1697e745005bSHong Zhang       for (k=0; nexta<anz; k++) {
1698e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1699e745005bSHong Zhang           ca[k] += valtmp*ada[nexta];
1700e745005bSHong Zhang           nexta++;
1701d6ab1dc0SHong Zhang         }
1702e745005bSHong Zhang       }
17039566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0*anz));
1704d6ab1dc0SHong Zhang     }
1705d6ab1dc0SHong Zhang   }
1706d6ab1dc0SHong Zhang 
1707d6ab1dc0SHong Zhang   /* 3) send and recv matrix values coa */
1708d6ab1dc0SHong Zhang   /*------------------------------------*/
1709d6ab1dc0SHong Zhang   buf_ri = merge->buf_ri;
1710d6ab1dc0SHong Zhang   buf_rj = merge->buf_rj;
1711d6ab1dc0SHong Zhang   len_s  = merge->len_s;
17129566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&taga));
17139566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm,taga,merge->nrecv,merge->id_r,merge->len_r,&abuf_r,&r_waits));
1714d6ab1dc0SHong Zhang 
17159566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend+1,&s_waits,size,&status));
1716d6ab1dc0SHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1717d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1718d6ab1dc0SHong Zhang     i    = merge->owners_co[proc];
17199566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coa+coi[i],len_s[proc],MPIU_MATSCALAR,proc,taga,comm,s_waits+k));
1720d6ab1dc0SHong Zhang     k++;
1721d6ab1dc0SHong Zhang   }
17229566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv,r_waits,status));
17239566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend,s_waits,status));
1724d6ab1dc0SHong Zhang 
17259566063dSJacob Faibussowitsch   PetscCall(PetscFree2(s_waits,status));
17269566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
17279566063dSJacob Faibussowitsch   PetscCall(PetscFree(coa));
1728d6ab1dc0SHong Zhang 
1729d6ab1dc0SHong Zhang   /* 4) insert local Cseq and received values into Cmpi */
1730d6ab1dc0SHong Zhang   /*----------------------------------------------------*/
17319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv,&buf_ri_k,merge->nrecv,&nextrow,merge->nrecv,&nextci));
1732d6ab1dc0SHong Zhang   for (k=0; k<merge->nrecv; k++) {
1733e745005bSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1734d6ab1dc0SHong Zhang     nrows       = *(buf_ri_k[k]);
1735d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k]+1;  /* next row number of k-th recved i-structure */
1736a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1737d6ab1dc0SHong Zhang   }
1738d6ab1dc0SHong Zhang 
1739d6ab1dc0SHong Zhang   for (i=0; i<cm; i++) {
1740d6ab1dc0SHong Zhang     row  = owners[rank] + i; /* global row index of C_seq */
1741d6ab1dc0SHong Zhang     bj_i = bj + bi[i];  /* col indices of the i-th row of C */
1742d6ab1dc0SHong Zhang     ba_i = ba + bi[i];
1743d6ab1dc0SHong Zhang     bnz  = bi[i+1] - bi[i];
1744d6ab1dc0SHong Zhang     /* add received vals into ba */
1745d6ab1dc0SHong Zhang     for (k=0; k<merge->nrecv; k++) { /* k-th received message */
1746d6ab1dc0SHong Zhang       /* i-th row */
1747d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {
1748d6ab1dc0SHong Zhang         cnz    = *(nextci[k]+1) - *nextci[k];
1749d6ab1dc0SHong Zhang         cj     = buf_rj[k] + *(nextci[k]);
1750d6ab1dc0SHong Zhang         ca     = abuf_r[k] + *(nextci[k]);
1751d6ab1dc0SHong Zhang         nextcj = 0;
1752d6ab1dc0SHong Zhang         for (j=0; nextcj<cnz; j++) {
1753d6ab1dc0SHong Zhang           if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */
1754d6ab1dc0SHong Zhang             ba_i[j] += ca[nextcj++];
1755d6ab1dc0SHong Zhang           }
1756d6ab1dc0SHong Zhang         }
1757d6ab1dc0SHong Zhang         nextrow[k]++; nextci[k]++;
17589566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0*cnz));
1759d6ab1dc0SHong Zhang       }
1760d6ab1dc0SHong Zhang     }
17619566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,&row,bnz,bj_i,ba_i,INSERT_VALUES));
1762d6ab1dc0SHong Zhang   }
17639566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
17649566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
1765d6ab1dc0SHong Zhang 
17669566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba));
17679566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
17689566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
17699566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k,nextrow,nextci));
1770d6ab1dc0SHong Zhang   PetscFunctionReturn(0);
1771d6ab1dc0SHong Zhang }
1772d6ab1dc0SHong Zhang 
17734222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P,Mat A,PetscReal fill,Mat C)
1774d6ab1dc0SHong Zhang {
1775b419842dSStefano Zampini   Mat                 A_loc;
17763cdca5ebSHong Zhang   Mat_APMPI           *ptap;
17770298fd71SBarry Smith   PetscFreeSpaceList  free_space=NULL,current_space=NULL;
17786718818eSStefano Zampini   Mat_MPIAIJ          *p=(Mat_MPIAIJ*)P->data,*a=(Mat_MPIAIJ*)A->data;
1779d6ab1dc0SHong Zhang   PetscInt            *pdti,*pdtj,*poti,*potj,*ptJ;
1780d6ab1dc0SHong Zhang   PetscInt            nnz;
1781d6ab1dc0SHong Zhang   PetscInt            *lnk,*owners_co,*coi,*coj,i,k,pnz,row;
1782d6ab1dc0SHong Zhang   PetscInt            am  =A->rmap->n,pn=P->cmap->n;
1783ce94432eSBarry Smith   MPI_Comm            comm;
1784d6ab1dc0SHong Zhang   PetscMPIInt         size,rank,tagi,tagj,*len_si,*len_s,*len_ri;
1785d6ab1dc0SHong Zhang   PetscInt            **buf_rj,**buf_ri,**buf_ri_k;
1786d6ab1dc0SHong Zhang   PetscInt            len,proc,*dnz,*onz,*owners;
1787d6ab1dc0SHong Zhang   PetscInt            nzi,*bi,*bj;
1788d6ab1dc0SHong Zhang   PetscInt            nrows,*buf_s,*buf_si,*buf_si_i,**nextrow,**nextci;
1789d6ab1dc0SHong Zhang   MPI_Request         *swaits,*rwaits;
1790d6ab1dc0SHong Zhang   MPI_Status          *sstatus,rstatus;
1791d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
1792d6ab1dc0SHong Zhang   PetscInt            *ai,*aj,*Jptr,anz,*prmap=p->garray,pon,nspacedouble=0,j;
1793d6ab1dc0SHong Zhang   PetscReal           afill  =1.0,afill_tmp;
17944b38b95cSHong Zhang   PetscInt            rstart = P->cmap->rstart,rmax,aN=A->cmap->N,Armax;
1795b419842dSStefano Zampini   Mat_SeqAIJ          *a_loc;
17960acc65b4SHong Zhang   PetscTable          ta;
1797b92f168fSBarry Smith   MatType             mtype;
1798d6ab1dc0SHong Zhang 
1799d6ab1dc0SHong Zhang   PetscFunctionBegin;
18009566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
1801d6ab1dc0SHong Zhang   /* check if matrix local sizes are compatible */
18022c71b3e2SJacob Faibussowitsch   PetscCheckFalse(A->rmap->rstart != P->rmap->rstart || A->rmap->rend != P->rmap->rend,comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,P->rmap->rstart,P->rmap->rend);
1803d6ab1dc0SHong Zhang 
18049566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
18059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
1806d6ab1dc0SHong Zhang 
18073cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
18089566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1809d6ab1dc0SHong Zhang 
1810d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
18119566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&A_loc));
18122205254eSKarl Rupp 
1813d6ab1dc0SHong Zhang   ptap->A_loc = A_loc;
1814d6ab1dc0SHong Zhang   a_loc       = (Mat_SeqAIJ*)(A_loc)->data;
1815d6ab1dc0SHong Zhang   ai          = a_loc->i;
1816d6ab1dc0SHong Zhang   aj          = a_loc->j;
1817d6ab1dc0SHong Zhang 
1818d6ab1dc0SHong Zhang   /* determine symbolic Co=(p->B)^T*A - send to others */
1819d6ab1dc0SHong Zhang   /*----------------------------------------------------*/
18209566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A,&pdti,&pdtj));
18219566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B,&poti,&potj));
1822d6ab1dc0SHong Zhang   pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors
1823d6ab1dc0SHong Zhang                          >= (num of nonzero rows of C_seq) - pn */
18249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pon+1,&coi));
1825d6ab1dc0SHong Zhang   coi[0] = 0;
1826d6ab1dc0SHong Zhang 
1827d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */
1828f91af8c7SBarry Smith   nnz           = PetscRealIntMultTruncate(fill,PetscIntSumTruncate(poti[pon],ai[am]));
18299566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz,&free_space));
1830d6ab1dc0SHong Zhang   current_space = free_space;
183119f0e57aSHong Zhang 
1832d6ab1dc0SHong Zhang   /* create and initialize a linked list */
18339566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(A->cmap->n + a->B->cmap->N,aN,&ta));
18344b38b95cSHong Zhang   MatRowMergeMax_SeqAIJ(a_loc,am,ta);
18359566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta,&Armax));
183633ba5e2fSHong Zhang 
18379566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax,&lnk));
1838d6ab1dc0SHong Zhang 
1839d6ab1dc0SHong Zhang   for (i=0; i<pon; i++) {
1840d6ab1dc0SHong Zhang     pnz = poti[i+1] - poti[i];
1841d6ab1dc0SHong Zhang     ptJ = potj + poti[i];
1842d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1843d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of A_loc == col of Pot */
1844d6ab1dc0SHong Zhang       anz  = ai[row+1] - ai[row];
1845d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1846d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
18479566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz,Jptr,lnk));
1848d6ab1dc0SHong Zhang     }
1849d6ab1dc0SHong Zhang     nnz = lnk[0];
1850d6ab1dc0SHong Zhang 
1851d6ab1dc0SHong Zhang     /* If free space is not available, double the total space in the list */
1852d6ab1dc0SHong Zhang     if (current_space->local_remaining<nnz) {
18539566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz,current_space->total_array_size),&current_space));
1854d6ab1dc0SHong Zhang       nspacedouble++;
1855d6ab1dc0SHong Zhang     }
1856d6ab1dc0SHong Zhang 
1857d6ab1dc0SHong Zhang     /* Copy data into free space, and zero out denserows */
18589566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz,current_space->array,lnk));
18592205254eSKarl Rupp 
1860d6ab1dc0SHong Zhang     current_space->array           += nnz;
1861d6ab1dc0SHong Zhang     current_space->local_used      += nnz;
1862d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
18632205254eSKarl Rupp 
1864d6ab1dc0SHong Zhang     coi[i+1] = coi[i] + nnz;
1865d6ab1dc0SHong Zhang   }
1866d6ab1dc0SHong Zhang 
18679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(coi[pon]+1,&coj));
18689566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,coj));
18699566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */
18702205254eSKarl Rupp 
1871118727c9SMark F. Adams   afill_tmp = (PetscReal)coi[pon]/(poti[pon] + ai[am]+1);
1872d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
1873d6ab1dc0SHong Zhang 
1874d6ab1dc0SHong Zhang   /* send j-array (coj) of Co to other processors */
1875d6ab1dc0SHong Zhang   /*----------------------------------------------*/
1876d6ab1dc0SHong Zhang   /* determine row ownership */
18779566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
18789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm,&merge->rowmap));
18792205254eSKarl Rupp 
1880d6ab1dc0SHong Zhang   merge->rowmap->n  = pn;
1881d6ab1dc0SHong Zhang   merge->rowmap->bs = 1;
18822205254eSKarl Rupp 
18839566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
1884d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
1885d6ab1dc0SHong Zhang 
1886d6ab1dc0SHong Zhang   /* determine the number of messages to send, their lengths */
18879566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size,&len_si));
18889566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size,&merge->len_s));
18892205254eSKarl Rupp 
1890d6ab1dc0SHong Zhang   len_s        = merge->len_s;
1891d6ab1dc0SHong Zhang   merge->nsend = 0;
1892d6ab1dc0SHong Zhang 
18939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size+2,&owners_co));
1894d6ab1dc0SHong Zhang 
1895d6ab1dc0SHong Zhang   proc = 0;
1896d6ab1dc0SHong Zhang   for (i=0; i<pon; i++) {
1897d6ab1dc0SHong Zhang     while (prmap[i] >= owners[proc+1]) proc++;
1898d6ab1dc0SHong Zhang     len_si[proc]++;  /* num of rows in Co to be sent to [proc] */
1899d6ab1dc0SHong Zhang     len_s[proc] += coi[i+1] - coi[i];
1900d6ab1dc0SHong Zhang   }
1901d6ab1dc0SHong Zhang 
1902d6ab1dc0SHong Zhang   len          = 0; /* max length of buf_si[] */
1903d6ab1dc0SHong Zhang   owners_co[0] = 0;
1904d6ab1dc0SHong Zhang   for (proc=0; proc<size; proc++) {
1905d6ab1dc0SHong Zhang     owners_co[proc+1] = owners_co[proc] + len_si[proc];
1906d6ab1dc0SHong Zhang     if (len_si[proc]) {
1907d6ab1dc0SHong Zhang       merge->nsend++;
1908d6ab1dc0SHong Zhang       len_si[proc] = 2*(len_si[proc] + 1);
1909d6ab1dc0SHong Zhang       len         += len_si[proc];
1910d6ab1dc0SHong Zhang     }
1911d6ab1dc0SHong Zhang   }
1912d6ab1dc0SHong Zhang 
1913d6ab1dc0SHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
19149566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm,NULL,len_s,&merge->nrecv));
19159566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm,merge->nsend,merge->nrecv,len_s,len_si,&merge->id_r,&merge->len_r,&len_ri));
1916d6ab1dc0SHong Zhang 
1917d6ab1dc0SHong Zhang   /* post the Irecv and Isend of coj */
19189566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&tagj));
19199566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm,tagj,merge->nrecv,merge->id_r,merge->len_r,&buf_rj,&rwaits));
19209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend+1,&swaits));
1921d6ab1dc0SHong Zhang   for (proc=0, k=0; proc<size; proc++) {
1922d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1923d6ab1dc0SHong Zhang     i    = owners_co[proc];
19249566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coj+coi[i],len_s[proc],MPIU_INT,proc,tagj,comm,swaits+k));
1925d6ab1dc0SHong Zhang     k++;
1926d6ab1dc0SHong Zhang   }
1927d6ab1dc0SHong Zhang 
1928d6ab1dc0SHong Zhang   /* receives and sends of coj are complete */
19299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size,&sstatus));
1930d6ab1dc0SHong Zhang   for (i=0; i<merge->nrecv; i++) {
1931ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
19329566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv,rwaits,&icompleted,&rstatus));
1933d6ab1dc0SHong Zhang   }
19349566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19359566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend,swaits,sstatus));
1936d6ab1dc0SHong Zhang 
19370acc65b4SHong Zhang   /* add received column indices into table to update Armax */
1938c4762a1bSJed Brown   /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */
19390acc65b4SHong Zhang   for (k=0; k<merge->nrecv; k++) {/* k-th received message */
19400acc65b4SHong Zhang     Jptr = buf_rj[k];
19410acc65b4SHong Zhang     for (j=0; j<merge->len_r[k]; j++) {
19429566063dSJacob Faibussowitsch       PetscCall(PetscTableAdd(ta,*(Jptr+j)+1,1,INSERT_VALUES));
19430acc65b4SHong Zhang     }
19440acc65b4SHong Zhang   }
19459566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta,&Armax));
19460acc65b4SHong Zhang 
1947d6ab1dc0SHong Zhang   /* send and recv coi */
1948d6ab1dc0SHong Zhang   /*-------------------*/
19499566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&tagi));
19509566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm,tagi,merge->nrecv,merge->id_r,len_ri,&buf_ri,&rwaits));
19519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len+1,&buf_s));
1952d6ab1dc0SHong Zhang   buf_si = buf_s;  /* points to the beginning of k-th msg to be sent */
1953d6ab1dc0SHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1954d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1955d6ab1dc0SHong Zhang     /* form outgoing message for i-structure:
1956d6ab1dc0SHong Zhang          buf_si[0]:                 nrows to be sent
1957d6ab1dc0SHong Zhang                [1:nrows]:           row index (global)
1958d6ab1dc0SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1959d6ab1dc0SHong Zhang     */
1960d6ab1dc0SHong Zhang     /*-------------------------------------------*/
1961d6ab1dc0SHong Zhang     nrows       = len_si[proc]/2 - 1;
1962d6ab1dc0SHong Zhang     buf_si_i    = buf_si + nrows+1;
1963d6ab1dc0SHong Zhang     buf_si[0]   = nrows;
1964d6ab1dc0SHong Zhang     buf_si_i[0] = 0;
1965d6ab1dc0SHong Zhang     nrows       = 0;
1966d6ab1dc0SHong Zhang     for (i=owners_co[proc]; i<owners_co[proc+1]; i++) {
1967d6ab1dc0SHong Zhang       nzi               = coi[i+1] - coi[i];
1968d6ab1dc0SHong Zhang       buf_si_i[nrows+1] = buf_si_i[nrows] + nzi;  /* i-structure */
1969d6ab1dc0SHong Zhang       buf_si[nrows+1]   = prmap[i] -owners[proc]; /* local row index */
1970d6ab1dc0SHong Zhang       nrows++;
1971d6ab1dc0SHong Zhang     }
19729566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si,len_si[proc],MPIU_INT,proc,tagi,comm,swaits+k));
1973d6ab1dc0SHong Zhang     k++;
1974d6ab1dc0SHong Zhang     buf_si += len_si[proc];
1975d6ab1dc0SHong Zhang   }
1976d6ab1dc0SHong Zhang   i = merge->nrecv;
1977d6ab1dc0SHong Zhang   while (i--) {
1978ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
19799566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv,rwaits,&icompleted,&rstatus));
1980d6ab1dc0SHong Zhang   }
19819566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19829566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend,swaits,sstatus));
19839566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
19849566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
19859566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
19869566063dSJacob Faibussowitsch   PetscCall(PetscFree(sstatus));
19879566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1988d6ab1dc0SHong Zhang 
1989d6ab1dc0SHong Zhang   /* compute the local portion of C (mpi mat) */
1990d6ab1dc0SHong Zhang   /*------------------------------------------*/
1991d6ab1dc0SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
19929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pn+1,&bi));
1993d6ab1dc0SHong Zhang   bi[0] = 0;
1994d6ab1dc0SHong Zhang 
1995d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(P) + nnz(AP)) */
1996f91af8c7SBarry Smith   nnz           = PetscRealIntMultTruncate(fill,PetscIntSumTruncate(pdti[pn],PetscIntSumTruncate(poti[pon],ai[am])));
19979566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz,&free_space));
1998d6ab1dc0SHong Zhang   current_space = free_space;
1999d6ab1dc0SHong Zhang 
20009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv,&buf_ri_k,merge->nrecv,&nextrow,merge->nrecv,&nextci));
2001d6ab1dc0SHong Zhang   for (k=0; k<merge->nrecv; k++) {
2002d6ab1dc0SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
2003d6ab1dc0SHong Zhang     nrows       = *buf_ri_k[k];
2004d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;  /* next row number of k-th recved i-structure */
20052d4ee042Sprj-     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure  */
2006d6ab1dc0SHong Zhang   }
2007d6ab1dc0SHong Zhang 
20089566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax,&lnk));
2009d0609cedSBarry Smith   MatPreallocateBegin(comm,pn,A->cmap->n,dnz,onz);
2010d6ab1dc0SHong Zhang   rmax = 0;
2011d6ab1dc0SHong Zhang   for (i=0; i<pn; i++) {
2012d6ab1dc0SHong Zhang     /* add pdt[i,:]*AP into lnk */
2013d6ab1dc0SHong Zhang     pnz = pdti[i+1] - pdti[i];
2014d6ab1dc0SHong Zhang     ptJ = pdtj + pdti[i];
2015d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
2016d6ab1dc0SHong Zhang       row  = ptJ[j];  /* row of AP == col of Pt */
2017d6ab1dc0SHong Zhang       anz  = ai[row+1] - ai[row];
2018d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
2019d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
20209566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz,Jptr,lnk));
2021d6ab1dc0SHong Zhang     }
2022d6ab1dc0SHong Zhang 
2023d6ab1dc0SHong Zhang     /* add received col data into lnk */
2024d6ab1dc0SHong Zhang     for (k=0; k<merge->nrecv; k++) { /* k-th received message */
2025d6ab1dc0SHong Zhang       if (i == *nextrow[k]) { /* i-th row */
2026d6ab1dc0SHong Zhang         nzi  = *(nextci[k]+1) - *nextci[k];
2027d6ab1dc0SHong Zhang         Jptr = buf_rj[k] + *nextci[k];
20289566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted_Scalable(nzi,Jptr,lnk));
2029d6ab1dc0SHong Zhang         nextrow[k]++; nextci[k]++;
2030d6ab1dc0SHong Zhang       }
2031d6ab1dc0SHong Zhang     }
20328c78258cSHong Zhang 
20338c78258cSHong Zhang     /* add missing diagonal entry */
20348c78258cSHong Zhang     if (C->force_diagonals) {
20358c78258cSHong Zhang       k = i + owners[rank]; /* column index */
20369566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1,&k,lnk));
20378c78258cSHong Zhang     }
20388c78258cSHong Zhang 
2039d6ab1dc0SHong Zhang     nnz = lnk[0];
2040d6ab1dc0SHong Zhang 
2041d6ab1dc0SHong Zhang     /* if free space is not available, make more free space */
2042d6ab1dc0SHong Zhang     if (current_space->local_remaining<nnz) {
20439566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz,current_space->total_array_size),&current_space));
2044d6ab1dc0SHong Zhang       nspacedouble++;
2045d6ab1dc0SHong Zhang     }
2046d6ab1dc0SHong Zhang     /* copy data into free space, then initialize lnk */
20479566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz,current_space->array,lnk));
20489566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+owners[rank],nnz,current_space->array,dnz,onz));
20492205254eSKarl Rupp 
2050d6ab1dc0SHong Zhang     current_space->array           += nnz;
2051d6ab1dc0SHong Zhang     current_space->local_used      += nnz;
2052d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
20532205254eSKarl Rupp 
2054d6ab1dc0SHong Zhang     bi[i+1] = bi[i] + nnz;
2055d6ab1dc0SHong Zhang     if (nnz > rmax) rmax = nnz;
2056d6ab1dc0SHong Zhang   }
20579566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k,nextrow,nextci));
2058d6ab1dc0SHong Zhang 
20599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[pn]+1,&bj));
20609566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,bj));
2061118727c9SMark F. Adams   afill_tmp = (PetscReal)bi[pn]/(pdti[pn] + poti[pon] + ai[am]+1);
2062d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
20639566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
20649566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&ta));
20659566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A,&pdti,&pdtj));
20669566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B,&poti,&potj));
2067d6ab1dc0SHong Zhang 
20684222ddf1SHong Zhang   /* create symbolic parallel matrix C - why cannot be assembled in Numeric part   */
20694222ddf1SHong Zhang   /*-------------------------------------------------------------------------------*/
20709566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,pn,A->cmap->n,PETSC_DETERMINE,PETSC_DETERMINE));
20719566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(C,PetscAbs(P->cmap->bs),PetscAbs(A->cmap->bs)));
20729566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
20739566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
20749566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
2075d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
20769566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(C,1));
20779566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE));
2078d6ab1dc0SHong Zhang   for (i=0; i<pn; i++) {
2079d6ab1dc0SHong Zhang     row  = i + rstart;
2080d6ab1dc0SHong Zhang     nnz  = bi[i+1] - bi[i];
2081d6ab1dc0SHong Zhang     Jptr = bj + bi[i];
20829566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,&row,nnz,Jptr,NULL,INSERT_VALUES));
2083d6ab1dc0SHong Zhang   }
20849566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
20859566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
20869566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
2087d6ab1dc0SHong Zhang   merge->bi        = bi;
2088d6ab1dc0SHong Zhang   merge->bj        = bj;
2089d6ab1dc0SHong Zhang   merge->coi       = coi;
2090d6ab1dc0SHong Zhang   merge->coj       = coj;
2091d6ab1dc0SHong Zhang   merge->buf_ri    = buf_ri;
2092d6ab1dc0SHong Zhang   merge->buf_rj    = buf_rj;
2093d6ab1dc0SHong Zhang   merge->owners_co = owners_co;
2094d6ab1dc0SHong Zhang 
20954222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
20966718818eSStefano Zampini   C->product->data    = ptap;
20976718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
2098d6ab1dc0SHong Zhang   ptap->merge         = merge;
2099a560ef98SHong Zhang 
21004222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ;
2101f96d37fcSHong Zhang 
2102f96d37fcSHong Zhang #if defined(PETSC_USE_INFO)
2103f96d37fcSHong Zhang   if (bi[pn] != 0) {
21049566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill));
21059566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n",(double)afill));
2106f96d37fcSHong Zhang   } else {
21079566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
2108f96d37fcSHong Zhang   }
2109f96d37fcSHong Zhang #endif
2110f96d37fcSHong Zhang   PetscFunctionReturn(0);
2111f96d37fcSHong Zhang }
21124222ddf1SHong Zhang 
21134222ddf1SHong Zhang /* ---------------------------------------------------------------- */
21144222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C)
21154222ddf1SHong Zhang {
21164222ddf1SHong Zhang   Mat_Product    *product = C->product;
21174222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
21184222ddf1SHong Zhang   PetscReal      fill=product->fill;
21194222ddf1SHong Zhang   PetscBool      flg;
21204222ddf1SHong Zhang 
21214222ddf1SHong Zhang   PetscFunctionBegin;
21224222ddf1SHong Zhang   /* scalable */
21239566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"scalable",&flg));
21244222ddf1SHong Zhang   if (flg) {
21259566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C));
21264222ddf1SHong Zhang     goto next;
21274222ddf1SHong Zhang   }
21284222ddf1SHong Zhang 
21294222ddf1SHong Zhang   /* nonscalable */
21309566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"nonscalable",&flg));
21314222ddf1SHong Zhang   if (flg) {
21329566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A,B,fill,C));
21334222ddf1SHong Zhang     goto next;
21344222ddf1SHong Zhang   }
21354222ddf1SHong Zhang 
21364222ddf1SHong Zhang   /* matmatmult */
21379566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"at*b",&flg));
21384222ddf1SHong Zhang   if (flg) {
21394222ddf1SHong Zhang     Mat       At;
21404222ddf1SHong Zhang     Mat_APMPI *ptap;
21414222ddf1SHong Zhang 
21429566063dSJacob Faibussowitsch     PetscCall(MatTranspose(A,MAT_INITIAL_MATRIX,&At));
21439566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At,B,fill,C));
21446718818eSStefano Zampini     ptap = (Mat_APMPI*)C->product->data;
21454222ddf1SHong Zhang     if (ptap) {
21464222ddf1SHong Zhang       ptap->Pt = At;
21476718818eSStefano Zampini       C->product->destroy = MatDestroy_MPIAIJ_PtAP;
21484222ddf1SHong Zhang     }
21494222ddf1SHong Zhang     C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult;
21504222ddf1SHong Zhang     goto next;
21514222ddf1SHong Zhang   }
21524222ddf1SHong Zhang 
21534e84afc0SStefano Zampini   /* backend general code */
21549566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"backend",&flg));
21554e84afc0SStefano Zampini   if (flg) {
21569566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
21574e84afc0SStefano Zampini     PetscFunctionReturn(0);
21584e84afc0SStefano Zampini   }
21594e84afc0SStefano Zampini 
21604222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatProduct type is not supported");
21614222ddf1SHong Zhang 
21624222ddf1SHong Zhang next:
21634222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AtB;
21644222ddf1SHong Zhang   PetscFunctionReturn(0);
21654222ddf1SHong Zhang }
21664222ddf1SHong Zhang 
21674222ddf1SHong Zhang /* ---------------------------------------------------------------- */
21684222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */
21694222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C)
21704222ddf1SHong Zhang {
21714222ddf1SHong Zhang   Mat_Product    *product = C->product;
21724222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
21734222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
21744e84afc0SStefano Zampini   const char     *algTypes[5] = {"scalable","nonscalable","seqmpi","backend","hypre"};
21754e84afc0SStefano Zampini   PetscInt       nalg = 5;
21764222ddf1SHong Zhang #else
21774e84afc0SStefano Zampini   const char     *algTypes[4] = {"scalable","nonscalable","seqmpi","backend",};
21784e84afc0SStefano Zampini   PetscInt       nalg = 4;
21794222ddf1SHong Zhang #endif
21804222ddf1SHong Zhang   PetscInt       alg = 1; /* set nonscalable algorithm as default */
21814222ddf1SHong Zhang   PetscBool      flg;
21824222ddf1SHong Zhang   MPI_Comm       comm;
21834222ddf1SHong Zhang 
21844222ddf1SHong Zhang   PetscFunctionBegin;
21854222ddf1SHong Zhang   /* Check matrix local sizes */
21869566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
21874222ddf1SHong Zhang 
21884222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
21899566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg,"default",&flg));
21904222ddf1SHong Zhang   if (flg) {
21919566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
21924222ddf1SHong Zhang 
21934222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
21944222ddf1SHong Zhang     if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
21954222ddf1SHong Zhang       MatInfo     Ainfo,Binfo;
21964222ddf1SHong Zhang       PetscInt    nz_local;
21974222ddf1SHong Zhang       PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
21984222ddf1SHong Zhang 
21999566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A,MAT_LOCAL,&Ainfo));
22009566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(B,MAT_LOCAL,&Binfo));
22014222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22024222ddf1SHong Zhang 
22034222ddf1SHong Zhang       if (B->cmap->N > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
22041c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm));
22054222ddf1SHong Zhang 
22064222ddf1SHong Zhang       if (alg_scalable) {
22074222ddf1SHong Zhang         alg  = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
22089566063dSJacob Faibussowitsch         PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
22099566063dSJacob Faibussowitsch         PetscCall(PetscInfo(B,"Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n",B->cmap->N,(double)(product->fill*nz_local)));
22104222ddf1SHong Zhang       }
22114222ddf1SHong Zhang     }
22124222ddf1SHong Zhang   }
22134222ddf1SHong Zhang 
22144222ddf1SHong Zhang   /* Get runtime option */
22154222ddf1SHong Zhang   if (product->api_user) {
2216d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatMult","Mat");
22179566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmult_via","Algorithmic approach","MatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2218d0609cedSBarry Smith     PetscOptionsEnd();
22194222ddf1SHong Zhang   } else {
2220d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_AB","Mat");
22219566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2222d0609cedSBarry Smith     PetscOptionsEnd();
22234222ddf1SHong Zhang   }
22244222ddf1SHong Zhang   if (flg) {
22259566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
22264222ddf1SHong Zhang   }
22274222ddf1SHong Zhang 
22284222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ;
22294222ddf1SHong Zhang   PetscFunctionReturn(0);
22304222ddf1SHong Zhang }
22314222ddf1SHong Zhang 
2232*8a9c020eSBarry Smith static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C)
2233*8a9c020eSBarry Smith {
2234*8a9c020eSBarry Smith   PetscFunctionBegin;
2235*8a9c020eSBarry Smith   PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
2236*8a9c020eSBarry Smith   C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ;
2237*8a9c020eSBarry Smith   PetscFunctionReturn(0);
2238*8a9c020eSBarry Smith }
2239*8a9c020eSBarry Smith 
22404222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */
22414222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C)
22424222ddf1SHong Zhang {
22434222ddf1SHong Zhang   Mat_Product    *product = C->product;
22444222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
22454e84afc0SStefano Zampini   const char     *algTypes[4] = {"scalable","nonscalable","at*b","backend"};
22464e84afc0SStefano Zampini   PetscInt       nalg = 4;
22474222ddf1SHong Zhang   PetscInt       alg = 1; /* set default algorithm  */
22484222ddf1SHong Zhang   PetscBool      flg;
22494222ddf1SHong Zhang   MPI_Comm       comm;
22504222ddf1SHong Zhang 
22514222ddf1SHong Zhang   PetscFunctionBegin;
22524222ddf1SHong Zhang   /* Check matrix local sizes */
22539566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
22542c71b3e2SJacob Faibussowitsch   PetscCheckFalse(A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
22554222ddf1SHong Zhang 
22564222ddf1SHong Zhang   /* Set default algorithm */
22579566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg,"default",&flg));
22584222ddf1SHong Zhang   if (flg) {
22599566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
22604222ddf1SHong Zhang   }
22614222ddf1SHong Zhang 
22624222ddf1SHong Zhang   /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22634222ddf1SHong Zhang   if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
22644222ddf1SHong Zhang     MatInfo     Ainfo,Binfo;
22654222ddf1SHong Zhang     PetscInt    nz_local;
22664222ddf1SHong Zhang     PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
22674222ddf1SHong Zhang 
22689566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(A,MAT_LOCAL,&Ainfo));
22699566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(B,MAT_LOCAL,&Binfo));
22704222ddf1SHong Zhang     nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22714222ddf1SHong Zhang 
22724222ddf1SHong Zhang     if (B->cmap->N > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
22731c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm));
22744222ddf1SHong Zhang 
22754222ddf1SHong Zhang     if (alg_scalable) {
22764222ddf1SHong Zhang       alg  = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
22779566063dSJacob Faibussowitsch       PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
22789566063dSJacob Faibussowitsch       PetscCall(PetscInfo(B,"Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n",B->cmap->N,(double)(product->fill*nz_local)));
22794222ddf1SHong Zhang     }
22804222ddf1SHong Zhang   }
22814222ddf1SHong Zhang 
22824222ddf1SHong Zhang   /* Get runtime option */
22834222ddf1SHong Zhang   if (product->api_user) {
2284d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatTransposeMatMult","Mat");
22859566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mattransposematmult_via","Algorithmic approach","MatTransposeMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2286d0609cedSBarry Smith     PetscOptionsEnd();
22874222ddf1SHong Zhang   } else {
2288d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_AtB","Mat");
22899566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatTransposeMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2290d0609cedSBarry Smith     PetscOptionsEnd();
22914222ddf1SHong Zhang   }
22924222ddf1SHong Zhang   if (flg) {
22939566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
22944222ddf1SHong Zhang   }
22954222ddf1SHong Zhang 
22964222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ;
22974222ddf1SHong Zhang   PetscFunctionReturn(0);
22984222ddf1SHong Zhang }
22994222ddf1SHong Zhang 
23004222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C)
23014222ddf1SHong Zhang {
23024222ddf1SHong Zhang   Mat_Product    *product = C->product;
23034222ddf1SHong Zhang   Mat            A=product->A,P=product->B;
23044222ddf1SHong Zhang   MPI_Comm       comm;
23054222ddf1SHong Zhang   PetscBool      flg;
23064222ddf1SHong Zhang   PetscInt       alg=1; /* set default algorithm */
23074222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
23084e84afc0SStefano Zampini   const char     *algTypes[5] = {"scalable","nonscalable","allatonce","allatonce_merged","backend"};
23094222ddf1SHong Zhang   PetscInt       nalg=5;
23104e84afc0SStefano Zampini #else
23114e84afc0SStefano Zampini   const char     *algTypes[6] = {"scalable","nonscalable","allatonce","allatonce_merged","backend","hypre"};
23124e84afc0SStefano Zampini   PetscInt       nalg=6;
23134222ddf1SHong Zhang #endif
23144222ddf1SHong Zhang   PetscInt       pN=P->cmap->N;
23154222ddf1SHong Zhang 
23164222ddf1SHong Zhang   PetscFunctionBegin;
23174222ddf1SHong Zhang   /* Check matrix local sizes */
23189566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
23192c71b3e2SJacob Faibussowitsch   PetscCheckFalse(A->rmap->rstart != P->rmap->rstart || A->rmap->rend != P->rmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,P->rmap->rstart,P->rmap->rend);
23202c71b3e2SJacob Faibussowitsch   PetscCheckFalse(A->cmap->rstart != P->rmap->rstart || A->cmap->rend != P->rmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->cmap->rstart,A->cmap->rend,P->rmap->rstart,P->rmap->rend);
23214222ddf1SHong Zhang 
23224222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
23239566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg,"default",&flg));
23244222ddf1SHong Zhang   if (flg) {
23259566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
23264222ddf1SHong Zhang 
23274222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
23284222ddf1SHong Zhang     if (pN > 100000) {
23294222ddf1SHong Zhang       MatInfo     Ainfo,Pinfo;
23304222ddf1SHong Zhang       PetscInt    nz_local;
23314222ddf1SHong Zhang       PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
23324222ddf1SHong Zhang 
23339566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A,MAT_LOCAL,&Ainfo));
23349566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(P,MAT_LOCAL,&Pinfo));
23354222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated);
23364222ddf1SHong Zhang 
23374222ddf1SHong Zhang       if (pN > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
23381c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm));
23394222ddf1SHong Zhang 
23404222ddf1SHong Zhang       if (alg_scalable) {
23414222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
23429566063dSJacob Faibussowitsch         PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
23434222ddf1SHong Zhang       }
23444222ddf1SHong Zhang     }
23454222ddf1SHong Zhang   }
23464222ddf1SHong Zhang 
23474222ddf1SHong Zhang   /* Get runtime option */
23484222ddf1SHong Zhang   if (product->api_user) {
2349d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatPtAP","Mat");
23509566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matptap_via","Algorithmic approach","MatPtAP",algTypes,nalg,algTypes[alg],&alg,&flg));
2351d0609cedSBarry Smith     PetscOptionsEnd();
23524222ddf1SHong Zhang   } else {
2353d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_PtAP","Mat");
23549566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatPtAP",algTypes,nalg,algTypes[alg],&alg,&flg));
2355d0609cedSBarry Smith     PetscOptionsEnd();
23564222ddf1SHong Zhang   }
23574222ddf1SHong Zhang   if (flg) {
23589566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
23594222ddf1SHong Zhang   }
23604222ddf1SHong Zhang 
23614222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ;
23624222ddf1SHong Zhang   PetscFunctionReturn(0);
23634222ddf1SHong Zhang }
23644222ddf1SHong Zhang 
23654222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C)
23664222ddf1SHong Zhang {
23674222ddf1SHong Zhang   Mat_Product *product = C->product;
23684222ddf1SHong Zhang   Mat         A = product->A,R=product->B;
23694222ddf1SHong Zhang 
23704222ddf1SHong Zhang   PetscFunctionBegin;
23714222ddf1SHong Zhang   /* Check matrix local sizes */
23722c71b3e2SJacob Faibussowitsch   PetscCheckFalse(A->cmap->n != R->cmap->n || A->rmap->n != R->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->n,A->rmap->n,R->rmap->n,R->cmap->n);
23734222ddf1SHong Zhang 
23744222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ;
23754222ddf1SHong Zhang   PetscFunctionReturn(0);
23764222ddf1SHong Zhang }
23774222ddf1SHong Zhang 
23784222ddf1SHong Zhang /*
23794222ddf1SHong Zhang  Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm
23804222ddf1SHong Zhang */
23814222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C)
23824222ddf1SHong Zhang {
23834222ddf1SHong Zhang   Mat_Product    *product = C->product;
23844222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
23854222ddf1SHong Zhang   PetscInt       alg = 1; /* default algorithm */
23864222ddf1SHong Zhang   const char     *algTypes[3] = {"scalable","nonscalable","seqmpi"};
23874222ddf1SHong Zhang   PetscInt       nalg = 3;
23884222ddf1SHong Zhang 
23894222ddf1SHong Zhang   PetscFunctionBegin;
23904222ddf1SHong Zhang   /* Set default algorithm */
23919566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg,"default",&flg));
23924222ddf1SHong Zhang   if (flg) {
23939566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
23944222ddf1SHong Zhang   }
23954222ddf1SHong Zhang 
23964222ddf1SHong Zhang   /* Get runtime option */
23974222ddf1SHong Zhang   if (product->api_user) {
2398d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatMatMult","Mat");
23999566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmatmult_via","Algorithmic approach","MatMatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2400d0609cedSBarry Smith     PetscOptionsEnd();
24014222ddf1SHong Zhang   } else {
2402d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABC","Mat");
24039566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABC",algTypes,nalg,algTypes[alg],&alg,&flg));
2404d0609cedSBarry Smith     PetscOptionsEnd();
24054222ddf1SHong Zhang   }
24064222ddf1SHong Zhang   if (flg) {
24079566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
24084222ddf1SHong Zhang   }
24094222ddf1SHong Zhang 
24104222ddf1SHong Zhang   C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ;
24114222ddf1SHong Zhang   C->ops->productsymbolic    = MatProductSymbolic_ABC;
24124222ddf1SHong Zhang   PetscFunctionReturn(0);
24134222ddf1SHong Zhang }
24144222ddf1SHong Zhang 
24154222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C)
24164222ddf1SHong Zhang {
24174222ddf1SHong Zhang   Mat_Product    *product = C->product;
24184222ddf1SHong Zhang 
24194222ddf1SHong Zhang   PetscFunctionBegin;
24204222ddf1SHong Zhang   switch (product->type) {
24214222ddf1SHong Zhang   case MATPRODUCT_AB:
24229566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
24234222ddf1SHong Zhang     break;
2424*8a9c020eSBarry Smith   case MATPRODUCT_ABt:
2425*8a9c020eSBarry Smith     PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C));
2426*8a9c020eSBarry Smith     break;
24274222ddf1SHong Zhang   case MATPRODUCT_AtB:
24289566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C));
24294222ddf1SHong Zhang     break;
24304222ddf1SHong Zhang   case MATPRODUCT_PtAP:
24319566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C));
24324222ddf1SHong Zhang     break;
24334222ddf1SHong Zhang   case MATPRODUCT_RARt:
24349566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C));
24354222ddf1SHong Zhang     break;
24364222ddf1SHong Zhang   case MATPRODUCT_ABC:
24379566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C));
24384222ddf1SHong Zhang     break;
24396718818eSStefano Zampini   default:
24406718818eSStefano Zampini     break;
24414222ddf1SHong Zhang   }
24424222ddf1SHong Zhang   PetscFunctionReturn(0);
24434222ddf1SHong Zhang }
2444